Multiple sequence alignment - TraesCS3A01G175300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G175300 chr3A 100.000 4857 0 0 1 4857 195183696 195188552 0.000000e+00 8970.0
1 TraesCS3A01G175300 chr3A 94.382 178 8 1 2514 2691 195185997 195186172 6.190000e-69 272.0
2 TraesCS3A01G175300 chr3A 94.382 178 8 1 2302 2477 195186209 195186386 6.190000e-69 272.0
3 TraesCS3A01G175300 chr3A 94.286 70 2 2 2225 2293 555313477 555313409 6.650000e-19 106.0
4 TraesCS3A01G175300 chr3A 96.825 63 1 1 2225 2287 642038883 642038944 2.390000e-18 104.0
5 TraesCS3A01G175300 chr3D 92.978 2008 69 29 1 1958 162849708 162851693 0.000000e+00 2861.0
6 TraesCS3A01G175300 chr3D 97.497 959 17 5 2302 3258 162852477 162853430 0.000000e+00 1631.0
7 TraesCS3A01G175300 chr3D 94.824 966 34 6 3257 4221 162854280 162855230 0.000000e+00 1493.0
8 TraesCS3A01G175300 chr3D 87.087 635 38 13 4229 4857 162857502 162858098 0.000000e+00 678.0
9 TraesCS3A01G175300 chr3D 97.482 278 3 2 1955 2228 162852131 162852408 5.690000e-129 472.0
10 TraesCS3A01G175300 chr3D 96.330 218 6 1 2474 2691 162852437 162852652 1.660000e-94 357.0
11 TraesCS3A01G175300 chr3D 97.024 168 5 0 2302 2469 162852689 162852856 2.860000e-72 283.0
12 TraesCS3A01G175300 chr3D 100.000 28 0 0 2277 2304 162852435 162852462 9.000000e-03 52.8
13 TraesCS3A01G175300 chr3B 91.349 1179 43 19 799 1955 239887833 239888974 0.000000e+00 1557.0
14 TraesCS3A01G175300 chr3B 84.437 951 85 29 2720 3637 239890431 239891351 0.000000e+00 878.0
15 TraesCS3A01G175300 chr3B 91.863 553 21 10 256 789 239885796 239886343 0.000000e+00 750.0
16 TraesCS3A01G175300 chr3B 87.871 404 39 9 3707 4107 239891357 239891753 2.650000e-127 466.0
17 TraesCS3A01G175300 chr3B 93.040 273 8 2 1 272 239885389 239885651 5.900000e-104 388.0
18 TraesCS3A01G175300 chr3B 91.556 225 10 5 1960 2175 239889607 239889831 7.900000e-78 302.0
19 TraesCS3A01G175300 chr5B 97.015 67 1 1 2225 2291 403717795 403717730 1.430000e-20 111.0
20 TraesCS3A01G175300 chr5B 96.875 64 1 1 2225 2288 214934867 214934929 6.650000e-19 106.0
21 TraesCS3A01G175300 chr5B 95.455 66 1 2 2225 2290 515818786 515818849 2.390000e-18 104.0
22 TraesCS3A01G175300 chr6B 96.875 64 1 1 2225 2287 49701485 49701422 6.650000e-19 106.0
23 TraesCS3A01G175300 chr4D 98.361 61 0 1 2225 2285 478512238 478512179 6.650000e-19 106.0
24 TraesCS3A01G175300 chr4B 98.361 61 0 1 2225 2285 455621501 455621442 6.650000e-19 106.0
25 TraesCS3A01G175300 chr5A 95.455 66 2 1 2225 2289 596662292 596662357 2.390000e-18 104.0
26 TraesCS3A01G175300 chr6A 100.000 40 0 0 638 677 398187838 398187877 1.870000e-09 75.0
27 TraesCS3A01G175300 chr2A 100.000 40 0 0 638 677 651808813 651808774 1.870000e-09 75.0
28 TraesCS3A01G175300 chr2A 93.333 45 2 1 638 682 762260815 762260858 1.130000e-06 65.8
29 TraesCS3A01G175300 chr4A 93.878 49 1 2 638 686 720059146 720059192 6.740000e-09 73.1
30 TraesCS3A01G175300 chr1B 90.741 54 3 2 638 690 622575185 622575237 2.430000e-08 71.3
31 TraesCS3A01G175300 chr7A 93.617 47 2 1 638 683 528286649 528286603 8.720000e-08 69.4
32 TraesCS3A01G175300 chr2B 97.500 40 1 0 637 676 10384614 10384653 8.720000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G175300 chr3A 195183696 195188552 4856 False 3171.333333 8970 96.254667 1 4857 3 chr3A.!!$F2 4856
1 TraesCS3A01G175300 chr3D 162849708 162858098 8390 False 978.475000 2861 95.402750 1 4857 8 chr3D.!!$F1 4856
2 TraesCS3A01G175300 chr3B 239885389 239891753 6364 False 723.500000 1557 90.019333 1 4107 6 chr3B.!!$F1 4106

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
956 2633 0.17902 TCCAACTGCTTCCACCACAG 60.179 55.0 0.0 0.0 37.45 3.66 F
957 2634 0.17902 CCAACTGCTTCCACCACAGA 60.179 55.0 0.0 0.0 35.38 3.41 F
2239 4716 0.03831 GTTTCCTTCCCCAGACCCTG 59.962 60.0 0.0 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1845 3537 0.032678 AACGATGAGCCCTATGAGCG 59.967 55.000 0.0 0.0 34.64 5.03 R
2856 5586 0.177604 CAGCCAACTAGAGAGCCCTG 59.822 60.000 0.0 0.0 0.00 4.45 R
4057 7666 1.226717 GTGGACGATGACCTCTCGC 60.227 63.158 0.0 0.0 39.71 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 51 4.893524 AGGCTTGTGTTTTACTTTAGGCTT 59.106 37.500 0.00 0.00 36.32 4.35
204 206 6.265422 CAGAGGGAAATTTGTTAGTTTCTGGT 59.735 38.462 0.00 0.00 35.29 4.00
249 251 1.814394 TGATGAACATGCTGAACTGCC 59.186 47.619 0.00 0.00 0.00 4.85
267 269 4.755123 ACTGCCAGTAACTTCACATTGTAC 59.245 41.667 0.00 0.00 0.00 2.90
320 483 2.206576 AACTGGGAAGCAGATTGTCC 57.793 50.000 0.00 0.00 0.00 4.02
624 804 4.992688 TGTTTTGCGAATCTTCACAACTT 58.007 34.783 0.00 0.00 29.84 2.66
791 2459 2.386935 GCAGCCCATTACCTCCCCT 61.387 63.158 0.00 0.00 0.00 4.79
796 2464 1.850998 GCCCATTACCTCCCCTACTTT 59.149 52.381 0.00 0.00 0.00 2.66
797 2465 2.243994 GCCCATTACCTCCCCTACTTTT 59.756 50.000 0.00 0.00 0.00 2.27
798 2466 3.309629 GCCCATTACCTCCCCTACTTTTT 60.310 47.826 0.00 0.00 0.00 1.94
825 2502 4.808649 CGTTCCGCTTCCCTCTAC 57.191 61.111 0.00 0.00 0.00 2.59
956 2633 0.179020 TCCAACTGCTTCCACCACAG 60.179 55.000 0.00 0.00 37.45 3.66
957 2634 0.179020 CCAACTGCTTCCACCACAGA 60.179 55.000 0.00 0.00 35.38 3.41
958 2635 1.546323 CCAACTGCTTCCACCACAGAT 60.546 52.381 0.00 0.00 35.38 2.90
959 2636 2.233271 CAACTGCTTCCACCACAGATT 58.767 47.619 0.00 0.00 35.38 2.40
960 2637 2.191128 ACTGCTTCCACCACAGATTC 57.809 50.000 0.00 0.00 35.38 2.52
961 2638 1.271597 ACTGCTTCCACCACAGATTCC 60.272 52.381 0.00 0.00 35.38 3.01
962 2639 0.770499 TGCTTCCACCACAGATTCCA 59.230 50.000 0.00 0.00 0.00 3.53
1314 2993 2.113774 TGGCTGACAGGGCTGTTG 59.886 61.111 4.26 0.00 45.05 3.33
1337 3016 8.541234 GTTGGGTGTGGGGAATTTATTTATTTA 58.459 33.333 0.00 0.00 0.00 1.40
1360 3044 3.328382 TGTTCTGCATACTAGGCGTTT 57.672 42.857 0.00 0.00 0.00 3.60
1469 3153 2.295253 CCGCAACTTCGGTAATCTCT 57.705 50.000 0.00 0.00 44.18 3.10
1484 3168 5.103898 GGTAATCTCTTCTCTTCCCCCATTT 60.104 44.000 0.00 0.00 0.00 2.32
1495 3179 4.279922 TCTTCCCCCATTTCTTTTCGAAAC 59.720 41.667 10.79 0.00 43.90 2.78
1499 3183 3.005791 CCCCATTTCTTTTCGAAACAGCT 59.994 43.478 10.79 0.00 43.90 4.24
1535 3219 2.993899 CGTCTGTGGTGGATGTACTTTC 59.006 50.000 0.00 0.00 0.00 2.62
1550 3234 3.149005 ACTTTCGGGTGATTTGGCTTA 57.851 42.857 0.00 0.00 0.00 3.09
1561 3245 2.248280 TTTGGCTTACTTGAGCGTGA 57.752 45.000 0.00 0.00 43.62 4.35
1621 3305 7.621285 TCTGTTGATGAATATATCTCCTAGGGG 59.379 40.741 9.46 5.31 0.00 4.79
1622 3306 6.673978 TGTTGATGAATATATCTCCTAGGGGG 59.326 42.308 9.36 2.39 0.00 5.40
1623 3307 6.690735 TGATGAATATATCTCCTAGGGGGA 57.309 41.667 9.36 8.30 42.77 4.81
1696 3381 4.868171 TGCTAAGTTAACCGCATAAGTGAG 59.132 41.667 0.88 0.00 0.00 3.51
1697 3382 4.868734 GCTAAGTTAACCGCATAAGTGAGT 59.131 41.667 0.88 0.00 0.00 3.41
1698 3383 5.220416 GCTAAGTTAACCGCATAAGTGAGTG 60.220 44.000 0.88 0.00 0.00 3.51
1699 3384 4.530710 AGTTAACCGCATAAGTGAGTGA 57.469 40.909 0.88 0.00 0.00 3.41
1700 3385 4.243270 AGTTAACCGCATAAGTGAGTGAC 58.757 43.478 0.88 0.00 0.00 3.67
1701 3386 2.094762 AACCGCATAAGTGAGTGACC 57.905 50.000 0.00 0.00 0.00 4.02
1702 3387 0.249398 ACCGCATAAGTGAGTGACCC 59.751 55.000 0.00 0.00 0.00 4.46
1703 3388 0.537188 CCGCATAAGTGAGTGACCCT 59.463 55.000 0.00 0.00 0.00 4.34
1704 3389 1.066143 CCGCATAAGTGAGTGACCCTT 60.066 52.381 0.00 0.00 0.00 3.95
1705 3390 2.615493 CCGCATAAGTGAGTGACCCTTT 60.615 50.000 0.00 0.00 0.00 3.11
1706 3391 3.369052 CCGCATAAGTGAGTGACCCTTTA 60.369 47.826 0.00 0.00 0.00 1.85
1707 3392 3.865745 CGCATAAGTGAGTGACCCTTTAG 59.134 47.826 0.00 0.00 0.00 1.85
1708 3393 4.381612 CGCATAAGTGAGTGACCCTTTAGA 60.382 45.833 0.00 0.00 0.00 2.10
1716 3407 7.783042 AGTGAGTGACCCTTTAGATTATGTAC 58.217 38.462 0.00 0.00 0.00 2.90
1743 3434 6.442564 TCAGAAGTACTTAGAAGGGCCAATAA 59.557 38.462 8.42 0.29 0.00 1.40
1757 3448 4.965119 GCCAATAATAATAGAAGGGCCG 57.035 45.455 0.00 0.00 34.17 6.13
1845 3537 5.419542 TGTGCTAATGTAGTGTGATTCCTC 58.580 41.667 0.00 0.00 0.00 3.71
1861 3553 0.246086 CCTCGCTCATAGGGCTCATC 59.754 60.000 0.00 0.00 0.00 2.92
1865 3557 1.506493 GCTCATAGGGCTCATCGTTG 58.494 55.000 0.00 0.00 0.00 4.10
1867 3559 1.688735 CTCATAGGGCTCATCGTTGGA 59.311 52.381 0.00 0.00 0.00 3.53
1868 3560 2.301296 CTCATAGGGCTCATCGTTGGAT 59.699 50.000 0.00 0.00 0.00 3.41
1945 3652 6.183360 CCGTAGCTATAACTCAGTTTGTTGTG 60.183 42.308 0.00 0.00 0.00 3.33
2096 4459 3.317150 CACGTATGGTCGATATGCATGT 58.683 45.455 10.16 1.23 34.70 3.21
2226 4703 4.686191 TGGTTGCAAATCAATGTTTCCT 57.314 36.364 0.00 0.00 31.16 3.36
2228 4705 5.055812 TGGTTGCAAATCAATGTTTCCTTC 58.944 37.500 0.00 0.00 31.16 3.46
2229 4706 4.452114 GGTTGCAAATCAATGTTTCCTTCC 59.548 41.667 0.00 0.00 36.99 3.46
2230 4707 4.270245 TGCAAATCAATGTTTCCTTCCC 57.730 40.909 0.00 0.00 0.00 3.97
2231 4708 3.007831 TGCAAATCAATGTTTCCTTCCCC 59.992 43.478 0.00 0.00 0.00 4.81
2233 4710 4.824289 CAAATCAATGTTTCCTTCCCCAG 58.176 43.478 0.00 0.00 0.00 4.45
2234 4711 4.402616 AATCAATGTTTCCTTCCCCAGA 57.597 40.909 0.00 0.00 0.00 3.86
2235 4712 3.154827 TCAATGTTTCCTTCCCCAGAC 57.845 47.619 0.00 0.00 0.00 3.51
2236 4713 2.171003 CAATGTTTCCTTCCCCAGACC 58.829 52.381 0.00 0.00 0.00 3.85
2237 4714 0.704664 ATGTTTCCTTCCCCAGACCC 59.295 55.000 0.00 0.00 0.00 4.46
2238 4715 0.402861 TGTTTCCTTCCCCAGACCCT 60.403 55.000 0.00 0.00 0.00 4.34
2239 4716 0.038310 GTTTCCTTCCCCAGACCCTG 59.962 60.000 0.00 0.00 0.00 4.45
2240 4717 1.789576 TTTCCTTCCCCAGACCCTGC 61.790 60.000 0.00 0.00 0.00 4.85
2241 4718 4.101448 CCTTCCCCAGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
2242 4719 4.785453 CTTCCCCAGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
2263 4740 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
2264 4741 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
2265 4742 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
2266 4743 1.153086 GGAGCTACATGCACTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
2267 4744 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
2268 4745 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
2269 4746 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
2270 4747 2.045045 TACATGCACTGGGGCTGC 60.045 61.111 0.00 0.00 35.03 5.25
2271 4748 3.643595 TACATGCACTGGGGCTGCC 62.644 63.158 11.05 11.05 33.36 4.85
2309 4803 8.889000 GTCTAAACTTTAGCAACACATTAAACG 58.111 33.333 3.91 0.00 0.00 3.60
2453 4947 1.755179 CACCATTGGAGTAAGGCTGG 58.245 55.000 10.37 0.00 0.00 4.85
2655 5149 0.681175 GCCTCAGTTTGCCACCATTT 59.319 50.000 0.00 0.00 0.00 2.32
3071 5803 5.733091 GCTTGTGTGTATTTCTTGTCTTGCA 60.733 40.000 0.00 0.00 0.00 4.08
3108 5840 5.843019 TTTCTTAGAGGGGTGTCATCTTT 57.157 39.130 0.00 0.00 37.68 2.52
3121 5853 5.163561 GGTGTCATCTTTTCAAACCAGTCAA 60.164 40.000 0.00 0.00 0.00 3.18
3187 5923 3.380471 TTTGGTATGTTCCATCCAGGG 57.620 47.619 0.00 0.00 37.33 4.45
3188 5924 2.278657 TGGTATGTTCCATCCAGGGA 57.721 50.000 0.00 0.00 38.24 4.20
3204 5940 4.018779 TCCAGGGACTTTAGTTTATGTGGG 60.019 45.833 0.00 0.00 34.60 4.61
3207 5943 3.021695 GGACTTTAGTTTATGTGGGCCC 58.978 50.000 17.59 17.59 0.00 5.80
3208 5944 3.562609 GGACTTTAGTTTATGTGGGCCCA 60.563 47.826 24.45 24.45 0.00 5.36
3209 5945 4.278310 GACTTTAGTTTATGTGGGCCCAT 58.722 43.478 31.45 16.64 0.00 4.00
3210 5946 4.023291 ACTTTAGTTTATGTGGGCCCATG 58.977 43.478 31.45 5.21 0.00 3.66
3211 5947 2.746279 TAGTTTATGTGGGCCCATGG 57.254 50.000 31.45 4.14 0.00 3.66
3271 6858 8.129496 TCAGTATGATTGTGGTTAACTGTAGA 57.871 34.615 5.42 0.00 42.56 2.59
3280 6867 5.597182 TGTGGTTAACTGTAGAGAGTTCTGT 59.403 40.000 5.42 0.00 37.38 3.41
3294 6881 5.574188 AGAGTTCTGTATTTGCTTGGGAAT 58.426 37.500 0.00 0.00 0.00 3.01
3311 6898 2.742053 GGAATGTAACAAGCGAGCTGAA 59.258 45.455 0.00 0.00 0.00 3.02
3471 7079 4.340617 TCCCATTTTCATTCCCACACTAC 58.659 43.478 0.00 0.00 0.00 2.73
3517 7125 8.039538 ACTTAAGAGGCTAGTGGTGTATTTTAC 58.960 37.037 10.09 0.00 0.00 2.01
3518 7126 6.622427 AAGAGGCTAGTGGTGTATTTTACT 57.378 37.500 0.00 0.00 0.00 2.24
3519 7127 6.622427 AGAGGCTAGTGGTGTATTTTACTT 57.378 37.500 0.00 0.00 0.00 2.24
3520 7128 7.729124 AGAGGCTAGTGGTGTATTTTACTTA 57.271 36.000 0.00 0.00 0.00 2.24
3521 7129 8.320338 AGAGGCTAGTGGTGTATTTTACTTAT 57.680 34.615 0.00 0.00 0.00 1.73
3522 7130 9.430399 AGAGGCTAGTGGTGTATTTTACTTATA 57.570 33.333 0.00 0.00 0.00 0.98
3562 7170 1.462616 TCATTTGTTGATCCTGGGCG 58.537 50.000 0.00 0.00 0.00 6.13
3619 7227 5.738909 TGCCTAAGAGATCCTTTTGAGAAG 58.261 41.667 2.37 0.00 36.34 2.85
3622 7230 7.038302 TGCCTAAGAGATCCTTTTGAGAAGTTA 60.038 37.037 2.37 0.00 36.34 2.24
3650 7258 4.309933 CTGGAAGCTACGCATGATATGAA 58.690 43.478 0.00 0.00 0.00 2.57
3651 7259 4.898320 TGGAAGCTACGCATGATATGAAT 58.102 39.130 0.00 0.00 0.00 2.57
3713 7321 2.365617 TGATCTCGGACCCTTTGCTATC 59.634 50.000 0.00 0.00 0.00 2.08
3985 7594 6.375174 CCATGTTGGTGTGAAATCTTAGATCA 59.625 38.462 0.00 0.00 31.35 2.92
4057 7666 5.255710 TGTAATATTGCCACAAAATCGGG 57.744 39.130 0.00 0.00 0.00 5.14
4063 7672 1.982073 GCCACAAAATCGGGCGAGAG 61.982 60.000 0.00 0.00 38.04 3.20
4073 7682 2.413765 GGCGAGAGGTCATCGTCC 59.586 66.667 0.00 0.00 42.13 4.79
4161 7770 5.773239 ATTCAGAATTTGCATTTTGCTCG 57.227 34.783 0.75 0.00 45.31 5.03
4162 7771 4.241590 TCAGAATTTGCATTTTGCTCGT 57.758 36.364 0.75 0.00 45.31 4.18
4163 7772 5.369685 TCAGAATTTGCATTTTGCTCGTA 57.630 34.783 0.75 0.00 45.31 3.43
4164 7773 5.953183 TCAGAATTTGCATTTTGCTCGTAT 58.047 33.333 0.75 0.00 45.31 3.06
4165 7774 7.082700 TCAGAATTTGCATTTTGCTCGTATA 57.917 32.000 0.75 0.00 45.31 1.47
4166 7775 7.188834 TCAGAATTTGCATTTTGCTCGTATAG 58.811 34.615 0.75 0.00 45.31 1.31
4183 7792 7.042320 TCGTATAGTCGTATTGAGTCATACG 57.958 40.000 20.05 20.05 45.14 3.06
4192 7801 2.040606 AGTCATACGCCCCACCCT 59.959 61.111 0.00 0.00 0.00 4.34
4225 7834 2.143122 CTAGTTGTGTGTTCATGCGGT 58.857 47.619 0.00 0.00 0.00 5.68
4226 7835 1.388547 AGTTGTGTGTTCATGCGGTT 58.611 45.000 0.00 0.00 0.00 4.44
4227 7836 1.065401 AGTTGTGTGTTCATGCGGTTG 59.935 47.619 0.00 0.00 0.00 3.77
4260 10133 2.257371 GCTGTGGCTGTGTGCATG 59.743 61.111 0.00 0.00 45.15 4.06
4261 10134 2.959372 CTGTGGCTGTGTGCATGG 59.041 61.111 0.00 0.00 45.15 3.66
4262 10135 3.277211 CTGTGGCTGTGTGCATGGC 62.277 63.158 0.00 0.00 45.15 4.40
4264 10137 4.639906 TGGCTGTGTGCATGGCGA 62.640 61.111 0.00 0.00 45.15 5.54
4265 10138 3.136123 GGCTGTGTGCATGGCGAT 61.136 61.111 0.00 0.00 45.15 4.58
4266 10139 2.101575 GCTGTGTGCATGGCGATG 59.898 61.111 4.04 4.04 42.31 3.84
4280 10153 3.161450 GATGCAGAGGCCGGGGTA 61.161 66.667 2.18 0.00 40.13 3.69
4281 10154 3.462199 GATGCAGAGGCCGGGGTAC 62.462 68.421 2.18 0.00 40.13 3.34
4282 10155 4.715130 TGCAGAGGCCGGGGTACT 62.715 66.667 2.18 0.00 40.13 2.73
4283 10156 3.851128 GCAGAGGCCGGGGTACTC 61.851 72.222 2.18 0.00 0.00 2.59
4286 10159 2.279408 GAGGCCGGGGTACTCTCT 59.721 66.667 2.18 0.00 0.00 3.10
4294 10167 3.746940 CCGGGGTACTCTCTTTTTGAAA 58.253 45.455 0.00 0.00 0.00 2.69
4312 10185 2.354074 AAAAACTGGCACGCTGCTGG 62.354 55.000 9.31 5.86 44.28 4.85
4323 10196 4.106925 CTGCTGGGAGCCTGGGAC 62.107 72.222 0.00 0.00 41.51 4.46
4339 10212 1.157585 GGACTCGAGGTTTTTGGCTC 58.842 55.000 18.41 1.18 0.00 4.70
4372 10245 3.817148 GATCTCGTCGATCTAGGTTCC 57.183 52.381 0.00 0.00 44.21 3.62
4373 10246 3.404899 GATCTCGTCGATCTAGGTTCCT 58.595 50.000 0.00 0.00 44.21 3.36
4374 10247 2.562635 TCTCGTCGATCTAGGTTCCTG 58.437 52.381 0.00 0.00 0.00 3.86
4375 10248 1.604755 CTCGTCGATCTAGGTTCCTGG 59.395 57.143 0.00 0.00 0.00 4.45
4376 10249 1.064906 TCGTCGATCTAGGTTCCTGGT 60.065 52.381 1.12 0.00 0.00 4.00
4377 10250 1.065701 CGTCGATCTAGGTTCCTGGTG 59.934 57.143 1.12 0.00 0.00 4.17
4378 10251 1.409427 GTCGATCTAGGTTCCTGGTGG 59.591 57.143 1.12 0.00 0.00 4.61
4379 10252 0.105039 CGATCTAGGTTCCTGGTGGC 59.895 60.000 1.12 0.00 0.00 5.01
4380 10253 0.470341 GATCTAGGTTCCTGGTGGCC 59.530 60.000 0.00 0.00 0.00 5.36
4381 10254 0.253160 ATCTAGGTTCCTGGTGGCCA 60.253 55.000 0.00 0.00 0.00 5.36
4382 10255 0.253160 TCTAGGTTCCTGGTGGCCAT 60.253 55.000 9.72 0.00 30.82 4.40
4383 10256 0.181350 CTAGGTTCCTGGTGGCCATC 59.819 60.000 9.72 9.78 30.82 3.51
4384 10257 0.548926 TAGGTTCCTGGTGGCCATCA 60.549 55.000 19.95 19.95 30.82 3.07
4387 10260 1.380246 TTCCTGGTGGCCATCATGC 60.380 57.895 21.60 0.00 30.82 4.06
4396 10269 3.274586 CCATCATGCGAGCACGGG 61.275 66.667 5.52 0.00 40.15 5.28
4399 10272 4.758251 TCATGCGAGCACGGGGTG 62.758 66.667 5.52 0.00 40.15 4.61
4441 10317 0.531974 GCGCGGGATAATCCTTGTCA 60.532 55.000 8.83 0.00 36.57 3.58
4442 10318 1.878102 GCGCGGGATAATCCTTGTCAT 60.878 52.381 8.83 0.00 36.57 3.06
4469 10345 4.913335 TCTGGTCAGCTATACTAAACCG 57.087 45.455 0.00 0.00 36.57 4.44
4480 10356 6.073331 AGCTATACTAAACCGTCGTATCTCAC 60.073 42.308 0.00 0.00 0.00 3.51
4498 10374 4.750098 TCTCACGAAGGATCAGTTGTTTTC 59.250 41.667 0.00 0.00 0.00 2.29
4503 10379 6.851330 CACGAAGGATCAGTTGTTTTCTTAAC 59.149 38.462 0.00 0.00 0.00 2.01
4536 10412 4.490743 TCAATCGATTTGACGCAGAGTTA 58.509 39.130 8.21 0.00 39.44 2.24
4537 10413 4.562789 TCAATCGATTTGACGCAGAGTTAG 59.437 41.667 8.21 0.00 39.44 2.34
4584 10460 6.018425 GCATGACAAGGTTCACATATGAGTAG 60.018 42.308 10.38 0.00 35.83 2.57
4664 10540 3.792047 CGGTCGCCGTCGTGAGTA 61.792 66.667 9.69 0.00 42.73 2.59
4671 10547 3.750162 CGTCGTGAGTACAAGGCG 58.250 61.111 0.00 0.00 45.06 5.52
4713 10589 3.957535 GATTCCATGCCGCCTGCG 61.958 66.667 4.20 4.20 45.60 5.18
4738 10614 0.452987 CAATGTCCATGTTGCTCGGG 59.547 55.000 0.00 0.00 0.00 5.14
4757 10635 2.288666 GGCAGTGAGAAAGTGTTCACA 58.711 47.619 5.74 0.00 44.72 3.58
4758 10636 2.682856 GGCAGTGAGAAAGTGTTCACAA 59.317 45.455 5.74 0.00 44.72 3.33
4761 10639 4.379394 GCAGTGAGAAAGTGTTCACAAACA 60.379 41.667 5.74 0.00 44.72 2.83
4808 10686 4.485834 CCTACGCACGCGCACCTA 62.486 66.667 12.02 0.00 44.19 3.08
4809 10687 2.949678 CTACGCACGCGCACCTAG 60.950 66.667 12.02 1.88 44.19 3.02
4810 10688 3.678717 CTACGCACGCGCACCTAGT 62.679 63.158 12.02 2.78 44.19 2.57
4811 10689 3.957027 TACGCACGCGCACCTAGTG 62.957 63.158 12.02 8.22 44.19 2.74
4824 10702 4.792521 CACCTAGTGCTTTAGAGACAGT 57.207 45.455 0.00 0.00 0.00 3.55
4829 10707 2.229302 AGTGCTTTAGAGACAGTCGACC 59.771 50.000 13.01 0.00 0.00 4.79
4839 10717 1.865340 GACAGTCGACCAGGTGTTTTC 59.135 52.381 13.01 0.00 0.00 2.29
4840 10718 0.859232 CAGTCGACCAGGTGTTTTCG 59.141 55.000 13.01 0.00 0.00 3.46
4851 10729 1.332686 GGTGTTTTCGAGAAAGCCGTT 59.667 47.619 9.35 0.00 31.65 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 51 2.984562 TCTCACACAACTGCTTCAACA 58.015 42.857 0.00 0.00 0.00 3.33
204 206 6.602278 ACTACTCATGATACACCTAGCTACA 58.398 40.000 0.00 0.00 0.00 2.74
249 251 7.173419 CGCTATTGTACAATGTGAAGTTACTG 58.827 38.462 27.62 5.94 32.50 2.74
293 456 2.886523 TCTGCTTCCCAGTTTGTTGATG 59.113 45.455 0.00 0.00 42.38 3.07
320 483 2.485426 AGTGAACAACGCCAAGATCATG 59.515 45.455 0.00 0.00 0.00 3.07
796 2464 2.328639 GGAACGCGCGGAACAAAA 59.671 55.556 35.22 0.00 0.00 2.44
809 2477 1.067364 GCTAGTAGAGGGAAGCGGAAC 59.933 57.143 0.00 0.00 0.00 3.62
844 2521 1.138859 CATCATTGTACGGGAGGCTGA 59.861 52.381 0.00 0.00 0.00 4.26
846 2523 1.496060 TCATCATTGTACGGGAGGCT 58.504 50.000 0.00 0.00 0.00 4.58
956 2633 0.242017 GCAGTGTGGCTTGTGGAATC 59.758 55.000 0.00 0.00 0.00 2.52
957 2634 1.181098 GGCAGTGTGGCTTGTGGAAT 61.181 55.000 0.00 0.00 40.14 3.01
958 2635 1.827789 GGCAGTGTGGCTTGTGGAA 60.828 57.895 0.00 0.00 40.14 3.53
959 2636 2.203337 GGCAGTGTGGCTTGTGGA 60.203 61.111 0.00 0.00 40.14 4.02
1305 2983 3.902112 CCCACACCCAACAGCCCT 61.902 66.667 0.00 0.00 0.00 5.19
1307 2985 2.730129 ATTCCCCACACCCAACAGCC 62.730 60.000 0.00 0.00 0.00 4.85
1308 2986 0.831711 AATTCCCCACACCCAACAGC 60.832 55.000 0.00 0.00 0.00 4.40
1309 2987 1.715785 AAATTCCCCACACCCAACAG 58.284 50.000 0.00 0.00 0.00 3.16
1310 2988 3.551635 ATAAATTCCCCACACCCAACA 57.448 42.857 0.00 0.00 0.00 3.33
1337 3016 3.873910 ACGCCTAGTATGCAGAACAAAT 58.126 40.909 4.93 0.00 0.00 2.32
1360 3044 1.351076 TCTCCATGGTGTGCTTCTCA 58.649 50.000 12.58 0.00 0.00 3.27
1467 3151 5.325239 GAAAAGAAATGGGGGAAGAGAAGA 58.675 41.667 0.00 0.00 0.00 2.87
1469 3153 4.079253 CGAAAAGAAATGGGGGAAGAGAA 58.921 43.478 0.00 0.00 0.00 2.87
1484 3168 4.260456 CCGTACAAAGCTGTTTCGAAAAGA 60.260 41.667 13.10 1.28 36.96 2.52
1495 3179 1.009829 GCATCCTCCGTACAAAGCTG 58.990 55.000 0.00 0.00 0.00 4.24
1499 3183 0.892755 AGACGCATCCTCCGTACAAA 59.107 50.000 0.00 0.00 39.30 2.83
1535 3219 2.420022 CTCAAGTAAGCCAAATCACCCG 59.580 50.000 0.00 0.00 0.00 5.28
1550 3234 2.851195 AGAAAATGGTCACGCTCAAGT 58.149 42.857 0.00 0.00 0.00 3.16
1561 3245 4.331108 GCCTCAGAAGAGAAGAAAATGGT 58.669 43.478 0.00 0.00 44.98 3.55
1621 3305 6.472686 AATTATACCTCAGTCACTGTCTCC 57.527 41.667 4.28 0.00 32.61 3.71
1622 3306 7.704472 CAGAAATTATACCTCAGTCACTGTCTC 59.296 40.741 4.28 0.00 32.61 3.36
1623 3307 7.179338 ACAGAAATTATACCTCAGTCACTGTCT 59.821 37.037 4.28 0.00 32.61 3.41
1685 3370 2.386661 AAGGGTCACTCACTTATGCG 57.613 50.000 0.00 0.00 38.11 4.73
1696 3381 8.475639 TCTGAAGTACATAATCTAAAGGGTCAC 58.524 37.037 0.00 0.00 0.00 3.67
1697 3382 8.603898 TCTGAAGTACATAATCTAAAGGGTCA 57.396 34.615 0.00 0.00 0.00 4.02
1698 3383 9.535878 CTTCTGAAGTACATAATCTAAAGGGTC 57.464 37.037 9.26 0.00 0.00 4.46
1699 3384 9.047947 ACTTCTGAAGTACATAATCTAAAGGGT 57.952 33.333 20.85 0.00 40.69 4.34
1716 3407 4.223032 TGGCCCTTCTAAGTACTTCTGAAG 59.777 45.833 27.34 27.34 35.25 3.02
1743 3434 7.402071 TGATTTATCCTACGGCCCTTCTATTAT 59.598 37.037 0.00 0.00 0.00 1.28
1752 3443 3.260884 TCAGATGATTTATCCTACGGCCC 59.739 47.826 0.00 0.00 36.40 5.80
1845 3537 0.032678 AACGATGAGCCCTATGAGCG 59.967 55.000 0.00 0.00 34.64 5.03
1861 3553 7.011016 TGAGCAAATACTTACATACATCCAACG 59.989 37.037 0.00 0.00 0.00 4.10
1865 3557 6.992715 ACCTGAGCAAATACTTACATACATCC 59.007 38.462 0.00 0.00 0.00 3.51
1867 3559 8.267894 AGAACCTGAGCAAATACTTACATACAT 58.732 33.333 0.00 0.00 0.00 2.29
1868 3560 7.620880 AGAACCTGAGCAAATACTTACATACA 58.379 34.615 0.00 0.00 0.00 2.29
1869 3561 7.043325 CGAGAACCTGAGCAAATACTTACATAC 60.043 40.741 0.00 0.00 0.00 2.39
1870 3562 6.978659 CGAGAACCTGAGCAAATACTTACATA 59.021 38.462 0.00 0.00 0.00 2.29
1945 3652 2.160205 GGTTACCCCTCAGCTGAAAAC 58.840 52.381 18.85 15.25 0.00 2.43
2224 4701 4.101448 CGCAGGGTCTGGGGAAGG 62.101 72.222 4.35 0.00 40.11 3.46
2237 4714 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2240 4717 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2241 4718 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2242 4719 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2245 4722 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
2246 4723 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
2247 4724 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
2248 4725 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
2249 4726 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
2250 4727 2.273449 GCCCCAGTGCATGTAGCT 59.727 61.111 0.00 0.00 45.94 3.32
2251 4728 2.117156 CAGCCCCAGTGCATGTAGC 61.117 63.158 0.00 0.00 45.96 3.58
2252 4729 2.117156 GCAGCCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 40.86 2.74
2253 4730 2.045045 GCAGCCCCAGTGCATGTA 60.045 61.111 0.00 0.00 40.86 2.29
2275 4752 9.777575 GTGTTGCTAAAGTTTAGACTAACAAAA 57.222 29.630 25.43 14.99 33.50 2.44
2453 4947 4.504858 ACATCCGTCTACCTTGATCAAAC 58.495 43.478 9.88 3.44 0.00 2.93
2655 5149 4.326826 CTTGATCAAACCAGCCTTACTCA 58.673 43.478 9.88 0.00 0.00 3.41
2856 5586 0.177604 CAGCCAACTAGAGAGCCCTG 59.822 60.000 0.00 0.00 0.00 4.45
3071 5803 7.381323 CCTCTAAGAAAATCCACAAAAGCAAT 58.619 34.615 0.00 0.00 0.00 3.56
3108 5840 5.825593 AGTATCCTCTTGACTGGTTTGAA 57.174 39.130 0.00 0.00 0.00 2.69
3121 5853 7.304497 ACTGACAAAGTGTTTAGTATCCTCT 57.696 36.000 0.00 0.00 37.88 3.69
3187 5923 3.692690 TGGGCCCACATAAACTAAAGTC 58.307 45.455 24.45 0.00 0.00 3.01
3188 5924 3.818295 TGGGCCCACATAAACTAAAGT 57.182 42.857 24.45 0.00 0.00 2.66
3239 5975 6.515272 AACCACAATCATACTGAATGGTTC 57.485 37.500 13.70 0.00 42.48 3.62
3262 6849 8.123639 AGCAAATACAGAACTCTCTACAGTTA 57.876 34.615 0.00 0.00 36.71 2.24
3271 6858 4.640771 TCCCAAGCAAATACAGAACTCT 57.359 40.909 0.00 0.00 0.00 3.24
3294 6881 3.545228 CGTTTTTCAGCTCGCTTGTTACA 60.545 43.478 0.00 0.00 0.00 2.41
3311 6898 9.581099 GAAATGTAATTATGTTCCCATCGTTTT 57.419 29.630 0.00 0.00 33.67 2.43
3471 7079 5.078411 AGTCCTAACTGCAACTCACTATG 57.922 43.478 0.00 0.00 33.32 2.23
3489 7097 2.832733 ACACCACTAGCCTCTTAAGTCC 59.167 50.000 1.63 0.00 0.00 3.85
3562 7170 5.010282 CAGGTATGGGGGCAATAGTTTATC 58.990 45.833 0.00 0.00 0.00 1.75
3666 7274 8.526667 TCAGAGAAGTGCTGTAGATTATAACT 57.473 34.615 0.00 0.00 34.98 2.24
3686 7294 1.993956 AGGGTCCGAGATCATCAGAG 58.006 55.000 0.00 0.00 0.00 3.35
3713 7321 3.482472 GCACTCGTATGTATCTTGTGTCG 59.518 47.826 0.00 0.00 0.00 4.35
3873 7482 1.915078 ATTGACGCCAGGGGGAGAAG 61.915 60.000 8.67 0.00 37.43 2.85
3985 7594 6.402442 GCTGAAACAAAGCAAAACAAAGACAT 60.402 34.615 0.00 0.00 40.52 3.06
4057 7666 1.226717 GTGGACGATGACCTCTCGC 60.227 63.158 0.00 0.00 39.71 5.03
4073 7682 6.043327 TCAGACAGTTTTTCGTACATTGTG 57.957 37.500 0.00 0.00 0.00 3.33
4150 7759 5.824243 ATACGACTATACGAGCAAAATGC 57.176 39.130 0.00 0.00 39.07 3.56
4183 7792 2.006991 AGGTTATCCAGGGTGGGGC 61.007 63.158 0.00 0.00 38.32 5.80
4192 7801 3.937814 CACAACTAGTGCAGGTTATCCA 58.062 45.455 0.00 0.00 42.15 3.41
4246 10119 4.409218 CGCCATGCACACAGCCAC 62.409 66.667 0.00 0.00 44.83 5.01
4264 10137 3.480133 GTACCCCGGCCTCTGCAT 61.480 66.667 0.00 0.00 40.13 3.96
4265 10138 4.715130 AGTACCCCGGCCTCTGCA 62.715 66.667 0.00 0.00 40.13 4.41
4266 10139 3.851128 GAGTACCCCGGCCTCTGC 61.851 72.222 0.00 0.00 0.00 4.26
4267 10140 2.042843 AGAGTACCCCGGCCTCTG 60.043 66.667 0.00 0.00 34.37 3.35
4268 10141 1.876546 AAGAGAGTACCCCGGCCTCT 61.877 60.000 0.00 9.95 38.25 3.69
4270 10143 0.546988 AAAAGAGAGTACCCCGGCCT 60.547 55.000 0.00 0.00 0.00 5.19
4271 10144 0.327259 AAAAAGAGAGTACCCCGGCC 59.673 55.000 0.00 0.00 0.00 6.13
4272 10145 1.002773 TCAAAAAGAGAGTACCCCGGC 59.997 52.381 0.00 0.00 0.00 6.13
4273 10146 3.412237 TTCAAAAAGAGAGTACCCCGG 57.588 47.619 0.00 0.00 0.00 5.73
4274 10147 5.761165 TTTTTCAAAAAGAGAGTACCCCG 57.239 39.130 0.00 0.00 0.00 5.73
4294 10167 2.723746 CAGCAGCGTGCCAGTTTT 59.276 55.556 6.39 0.00 46.52 2.43
4312 10185 3.151022 CCTCGAGTCCCAGGCTCC 61.151 72.222 12.31 0.00 0.00 4.70
4317 10190 1.523758 CCAAAAACCTCGAGTCCCAG 58.476 55.000 12.31 0.00 0.00 4.45
4323 10196 3.058639 CAGAAAGAGCCAAAAACCTCGAG 60.059 47.826 5.13 5.13 33.39 4.04
4339 10212 2.670414 GACGAGATCTTGCACCAGAAAG 59.330 50.000 10.09 0.00 0.00 2.62
4365 10238 0.548926 TGATGGCCACCAGGAACCTA 60.549 55.000 8.16 0.00 36.75 3.08
4366 10239 1.217057 ATGATGGCCACCAGGAACCT 61.217 55.000 8.16 0.00 36.75 3.50
4367 10240 1.039233 CATGATGGCCACCAGGAACC 61.039 60.000 5.61 0.00 36.75 3.62
4368 10241 1.669999 GCATGATGGCCACCAGGAAC 61.670 60.000 18.11 0.00 36.75 3.62
4369 10242 1.380246 GCATGATGGCCACCAGGAA 60.380 57.895 18.11 0.00 36.75 3.36
4370 10243 2.276409 GCATGATGGCCACCAGGA 59.724 61.111 18.11 0.00 36.75 3.86
4371 10244 3.214123 CGCATGATGGCCACCAGG 61.214 66.667 7.61 7.61 36.75 4.45
4372 10245 2.124612 TCGCATGATGGCCACCAG 60.125 61.111 8.16 0.00 36.75 4.00
4373 10246 2.124612 CTCGCATGATGGCCACCA 60.125 61.111 8.16 3.91 38.19 4.17
4374 10247 3.589881 GCTCGCATGATGGCCACC 61.590 66.667 8.16 0.00 0.00 4.61
4375 10248 2.825387 TGCTCGCATGATGGCCAC 60.825 61.111 8.16 2.36 0.00 5.01
4376 10249 2.825387 GTGCTCGCATGATGGCCA 60.825 61.111 8.56 8.56 0.00 5.36
4377 10250 3.945434 CGTGCTCGCATGATGGCC 61.945 66.667 5.18 0.00 35.09 5.36
4378 10251 3.945434 CCGTGCTCGCATGATGGC 61.945 66.667 12.42 0.00 35.09 4.40
4379 10252 3.274586 CCCGTGCTCGCATGATGG 61.275 66.667 12.42 2.75 35.09 3.51
4380 10253 3.274586 CCCCGTGCTCGCATGATG 61.275 66.667 12.42 3.66 35.09 3.07
4381 10254 3.785859 ACCCCGTGCTCGCATGAT 61.786 61.111 12.42 0.00 35.09 2.45
4382 10255 4.758251 CACCCCGTGCTCGCATGA 62.758 66.667 12.42 0.00 35.09 3.07
4384 10257 4.760047 GACACCCCGTGCTCGCAT 62.760 66.667 1.89 0.00 36.98 4.73
4387 10260 2.432628 GAAGACACCCCGTGCTCG 60.433 66.667 0.14 0.14 36.98 5.03
4396 10269 4.700692 GGAGAACCCAATTAAGAAGACACC 59.299 45.833 0.00 0.00 34.14 4.16
4425 10301 5.835113 AAACAATGACAAGGATTATCCCG 57.165 39.130 7.76 2.12 37.19 5.14
4426 10302 7.260603 CAGAAAACAATGACAAGGATTATCCC 58.739 38.462 7.76 0.00 37.19 3.85
4441 10317 8.947115 GTTTAGTATAGCTGACCAGAAAACAAT 58.053 33.333 0.00 0.00 0.00 2.71
4442 10318 7.389607 GGTTTAGTATAGCTGACCAGAAAACAA 59.610 37.037 0.00 0.00 35.84 2.83
4480 10356 6.071463 CGTTAAGAAAACAACTGATCCTTCG 58.929 40.000 0.00 0.00 0.00 3.79
4498 10374 6.887376 TCGATTGATCTTTCTTCCGTTAAG 57.113 37.500 0.00 0.00 36.45 1.85
4503 10379 6.349973 TCAAATCGATTGATCTTTCTTCCG 57.650 37.500 12.25 0.00 43.08 4.30
4536 10412 2.259818 CGTCTCTCCGTTGCTGCT 59.740 61.111 0.00 0.00 0.00 4.24
4537 10413 2.049063 ACGTCTCTCCGTTGCTGC 60.049 61.111 0.00 0.00 37.96 5.25
4623 10499 1.341802 GAAAGCATCGCGTCTCACG 59.658 57.895 5.77 0.00 45.88 4.35
4630 10506 1.060937 CGGAAAGGAAAGCATCGCG 59.939 57.895 0.00 0.00 0.00 5.87
4638 10514 2.357760 CGGCGACCGGAAAGGAAA 60.358 61.111 9.46 0.00 44.15 3.13
4664 10540 2.355481 GAACGGACGTCGCCTTGT 60.355 61.111 9.92 0.00 43.89 3.16
4671 10547 1.462094 GCTTCGATCGAACGGACGTC 61.462 60.000 25.96 7.13 34.70 4.34
4713 10589 1.074319 CAACATGGACATTGCTGCGC 61.074 55.000 0.00 0.00 0.00 6.09
4738 10614 4.098416 GTTTGTGAACACTTTCTCACTGC 58.902 43.478 6.51 0.00 42.06 4.40
4757 10635 3.335534 GCGGCGTCGTCACTGTTT 61.336 61.111 12.58 0.00 38.89 2.83
4808 10686 2.229302 GGTCGACTGTCTCTAAAGCACT 59.771 50.000 16.46 0.00 0.00 4.40
4809 10687 2.030185 TGGTCGACTGTCTCTAAAGCAC 60.030 50.000 16.46 0.00 0.00 4.40
4810 10688 2.229062 CTGGTCGACTGTCTCTAAAGCA 59.771 50.000 16.46 0.00 0.00 3.91
4811 10689 2.416162 CCTGGTCGACTGTCTCTAAAGC 60.416 54.545 16.46 0.00 0.00 3.51
4812 10690 2.820787 ACCTGGTCGACTGTCTCTAAAG 59.179 50.000 16.46 0.10 0.00 1.85
4813 10691 2.557056 CACCTGGTCGACTGTCTCTAAA 59.443 50.000 16.46 0.00 0.00 1.85
4814 10692 2.160205 CACCTGGTCGACTGTCTCTAA 58.840 52.381 16.46 0.00 0.00 2.10
4815 10693 1.073444 ACACCTGGTCGACTGTCTCTA 59.927 52.381 16.46 0.00 0.00 2.43
4824 10702 1.034356 TCTCGAAAACACCTGGTCGA 58.966 50.000 0.00 1.47 40.00 4.20
4829 10707 1.069906 CGGCTTTCTCGAAAACACCTG 60.070 52.381 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.