Multiple sequence alignment - TraesCS3A01G174400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G174400 chr3A 100.000 4932 0 0 1 4932 192858434 192853503 0.000000e+00 9108.0
1 TraesCS3A01G174400 chr3A 89.560 182 7 1 1591 1772 192856667 192856498 2.310000e-53 220.0
2 TraesCS3A01G174400 chr3A 89.560 182 7 1 1768 1937 192856844 192856663 2.310000e-53 220.0
3 TraesCS3A01G174400 chr3A 73.524 593 128 20 36 617 683958679 683959253 1.080000e-46 198.0
4 TraesCS3A01G174400 chr3A 97.143 105 3 0 2341 2445 192855989 192855885 1.410000e-40 178.0
5 TraesCS3A01G174400 chr3A 97.143 105 3 0 2446 2550 192856094 192855990 1.410000e-40 178.0
6 TraesCS3A01G174400 chr3D 96.958 2433 57 4 847 3278 162184011 162181595 0.000000e+00 4067.0
7 TraesCS3A01G174400 chr3D 95.599 568 23 2 3270 3837 162181253 162180688 0.000000e+00 909.0
8 TraesCS3A01G174400 chr3D 85.906 298 33 4 537 831 162184287 162183996 4.790000e-80 309.0
9 TraesCS3A01G174400 chr3D 95.294 170 8 0 1768 1937 162183266 162183097 2.260000e-68 270.0
10 TraesCS3A01G174400 chr3D 89.560 182 7 1 1591 1772 162183101 162182932 2.310000e-53 220.0
11 TraesCS3A01G174400 chr3D 97.143 105 3 0 2341 2445 162182426 162182322 1.410000e-40 178.0
12 TraesCS3A01G174400 chr3D 95.455 110 4 1 2441 2550 162182535 162182427 1.820000e-39 174.0
13 TraesCS3A01G174400 chr3B 95.692 1091 32 2 847 1937 239255580 239254505 0.000000e+00 1740.0
14 TraesCS3A01G174400 chr3B 95.362 1035 36 3 2341 3375 239253834 239252812 0.000000e+00 1635.0
15 TraesCS3A01G174400 chr3B 94.062 960 42 2 1591 2550 239254674 239253730 0.000000e+00 1443.0
16 TraesCS3A01G174400 chr3B 94.118 170 10 0 1768 1937 239254839 239254670 4.900000e-65 259.0
17 TraesCS3A01G174400 chr3B 93.529 170 10 1 3668 3837 239252732 239252564 8.200000e-63 252.0
18 TraesCS3A01G174400 chr3B 76.506 498 84 17 36 526 242646682 242647153 1.770000e-59 241.0
19 TraesCS3A01G174400 chr3B 85.022 227 32 2 4361 4586 302347743 302347518 3.840000e-56 230.0
20 TraesCS3A01G174400 chr3B 87.363 182 11 4 1591 1772 239254509 239254340 1.080000e-46 198.0
21 TraesCS3A01G174400 chr3B 98.095 105 2 0 2341 2445 239253729 239253625 3.030000e-42 183.0
22 TraesCS3A01G174400 chr3B 94.545 110 5 1 2441 2550 239253943 239253835 8.490000e-38 169.0
23 TraesCS3A01G174400 chr3B 97.674 43 1 0 4888 4930 559206076 559206118 1.900000e-09 75.0
24 TraesCS3A01G174400 chr6D 90.901 1099 62 8 3834 4930 133291280 133292342 0.000000e+00 1441.0
25 TraesCS3A01G174400 chr6D 76.728 593 95 22 35 608 23097472 23098040 1.740000e-74 291.0
26 TraesCS3A01G174400 chr1B 89.693 1106 68 16 3835 4927 6347834 6348906 0.000000e+00 1369.0
27 TraesCS3A01G174400 chr5B 88.140 1113 88 18 3835 4930 673114955 673113870 0.000000e+00 1284.0
28 TraesCS3A01G174400 chr5B 76.858 592 107 21 36 617 570514969 570515540 1.720000e-79 307.0
29 TraesCS3A01G174400 chr5A 87.713 1115 92 19 3832 4928 364526140 364527227 0.000000e+00 1258.0
30 TraesCS3A01G174400 chr5A 76.538 520 76 29 46 547 33937345 33936854 4.930000e-60 243.0
31 TraesCS3A01G174400 chr5A 81.275 251 41 2 4430 4674 244438410 244438160 1.080000e-46 198.0
32 TraesCS3A01G174400 chr5A 79.461 297 44 7 4110 4406 244447328 244447049 1.400000e-45 195.0
33 TraesCS3A01G174400 chr4B 94.764 573 11 3 4374 4930 28305164 28304595 0.000000e+00 874.0
34 TraesCS3A01G174400 chr4B 91.878 394 13 11 3835 4213 28305564 28305175 2.610000e-147 532.0
35 TraesCS3A01G174400 chr4B 76.026 609 103 25 31 629 546639409 546638834 4.860000e-70 276.0
36 TraesCS3A01G174400 chr6B 77.760 616 106 22 29 630 457223494 457222896 2.830000e-92 350.0
37 TraesCS3A01G174400 chr6B 77.252 444 87 13 4153 4590 1242121 1241686 1.060000e-61 248.0
38 TraesCS3A01G174400 chr6B 73.529 136 36 0 4235 4370 32596713 32596848 9.000000e-03 52.8
39 TraesCS3A01G174400 chr1D 77.243 602 114 14 36 620 364070613 364070018 1.020000e-86 331.0
40 TraesCS3A01G174400 chr1D 81.457 151 24 3 4222 4368 451999961 451999811 2.410000e-23 121.0
41 TraesCS3A01G174400 chr2D 78.544 522 89 19 35 541 489666232 489666745 6.160000e-84 322.0
42 TraesCS3A01G174400 chr2B 76.014 592 116 17 34 617 39411184 39411757 2.910000e-72 283.0
43 TraesCS3A01G174400 chr2B 75.372 605 107 24 35 629 456054951 456054379 2.280000e-63 254.0
44 TraesCS3A01G174400 chr2B 75.548 593 102 25 36 617 364787615 364788175 8.200000e-63 252.0
45 TraesCS3A01G174400 chr2B 75.166 604 108 24 36 629 456054087 456053516 3.810000e-61 246.0
46 TraesCS3A01G174400 chr2B 85.903 227 30 2 4361 4586 3395397 3395622 1.770000e-59 241.0
47 TraesCS3A01G174400 chr2B 77.103 214 43 6 421 629 487209982 487209770 8.670000e-23 119.0
48 TraesCS3A01G174400 chr2B 92.500 40 3 0 4331 4370 635044590 635044629 1.920000e-04 58.4
49 TraesCS3A01G174400 chr7A 75.399 626 106 33 35 620 10629244 10629861 4.900000e-65 259.0
50 TraesCS3A01G174400 chr7A 79.718 355 67 5 994 1346 247062750 247063101 8.200000e-63 252.0
51 TraesCS3A01G174400 chr7D 80.112 357 62 9 994 1346 234126673 234127024 1.760000e-64 257.0
52 TraesCS3A01G174400 chr7B 80.357 336 61 5 994 1327 205714864 205715196 2.950000e-62 250.0
53 TraesCS3A01G174400 chr7B 79.478 268 46 9 38 302 692395149 692394888 1.090000e-41 182.0
54 TraesCS3A01G174400 chr7B 100.000 31 0 0 4340 4370 716257729 716257699 1.920000e-04 58.4
55 TraesCS3A01G174400 chr4D 74.850 501 94 22 131 620 53464737 53465216 1.080000e-46 198.0
56 TraesCS3A01G174400 chr1A 83.000 200 25 8 36 230 550017134 550017329 6.560000e-39 172.0
57 TraesCS3A01G174400 chr1A 82.587 201 30 5 33 230 571493997 571494195 6.560000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G174400 chr3A 192853503 192858434 4931 True 1980.800000 9108 94.681200 1 4932 5 chr3A.!!$R1 4931
1 TraesCS3A01G174400 chr3D 162180688 162184287 3599 True 875.285714 4067 93.702143 537 3837 7 chr3D.!!$R1 3300
2 TraesCS3A01G174400 chr3B 239252564 239255580 3016 True 734.875000 1740 94.095750 847 3837 8 chr3B.!!$R2 2990
3 TraesCS3A01G174400 chr6D 133291280 133292342 1062 False 1441.000000 1441 90.901000 3834 4930 1 chr6D.!!$F2 1096
4 TraesCS3A01G174400 chr6D 23097472 23098040 568 False 291.000000 291 76.728000 35 608 1 chr6D.!!$F1 573
5 TraesCS3A01G174400 chr1B 6347834 6348906 1072 False 1369.000000 1369 89.693000 3835 4927 1 chr1B.!!$F1 1092
6 TraesCS3A01G174400 chr5B 673113870 673114955 1085 True 1284.000000 1284 88.140000 3835 4930 1 chr5B.!!$R1 1095
7 TraesCS3A01G174400 chr5B 570514969 570515540 571 False 307.000000 307 76.858000 36 617 1 chr5B.!!$F1 581
8 TraesCS3A01G174400 chr5A 364526140 364527227 1087 False 1258.000000 1258 87.713000 3832 4928 1 chr5A.!!$F1 1096
9 TraesCS3A01G174400 chr4B 28304595 28305564 969 True 703.000000 874 93.321000 3835 4930 2 chr4B.!!$R2 1095
10 TraesCS3A01G174400 chr4B 546638834 546639409 575 True 276.000000 276 76.026000 31 629 1 chr4B.!!$R1 598
11 TraesCS3A01G174400 chr6B 457222896 457223494 598 True 350.000000 350 77.760000 29 630 1 chr6B.!!$R2 601
12 TraesCS3A01G174400 chr1D 364070018 364070613 595 True 331.000000 331 77.243000 36 620 1 chr1D.!!$R1 584
13 TraesCS3A01G174400 chr2D 489666232 489666745 513 False 322.000000 322 78.544000 35 541 1 chr2D.!!$F1 506
14 TraesCS3A01G174400 chr2B 39411184 39411757 573 False 283.000000 283 76.014000 34 617 1 chr2B.!!$F2 583
15 TraesCS3A01G174400 chr2B 364787615 364788175 560 False 252.000000 252 75.548000 36 617 1 chr2B.!!$F3 581
16 TraesCS3A01G174400 chr2B 456053516 456054951 1435 True 250.000000 254 75.269000 35 629 2 chr2B.!!$R2 594
17 TraesCS3A01G174400 chr7A 10629244 10629861 617 False 259.000000 259 75.399000 35 620 1 chr7A.!!$F1 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
654 1583 0.374410 CGCGTGCACATGATCAATCA 59.626 50.0 18.64 0.0 41.7 2.57 F
1758 2853 0.174617 CTGAGCCGGAGAAAGGAGAC 59.825 60.0 5.05 0.0 0.0 3.36 F
2756 3956 0.335361 AAGAGCTCCGACCCTTCCTA 59.665 55.0 10.93 0.0 0.0 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2249 3344 0.029577 ATCCCCCTTCTCTTCCTCCC 60.030 60.0 0.0 0.0 0.0 4.30 R
3041 4241 0.108424 CTCAAGGGGACAAGCTCTCG 60.108 60.0 0.0 0.0 0.0 4.04 R
4267 5834 0.034186 CCATAGTCCAGGCAAGGCAA 60.034 55.0 0.0 0.0 0.0 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.623848 TTGTTCAGATGGGGTGTCG 57.376 52.632 0.00 0.00 0.00 4.35
19 20 0.605319 TTGTTCAGATGGGGTGTCGC 60.605 55.000 0.00 0.00 0.00 5.19
20 21 2.100631 GTTCAGATGGGGTGTCGCG 61.101 63.158 0.00 0.00 0.00 5.87
21 22 3.950794 TTCAGATGGGGTGTCGCGC 62.951 63.158 0.00 0.00 0.00 6.86
68 69 6.542821 CAATGAGTACCCATTACCCATGTAT 58.457 40.000 1.90 0.00 35.20 2.29
71 72 5.306937 TGAGTACCCATTACCCATGTATCTG 59.693 44.000 0.00 0.00 0.00 2.90
74 75 4.044308 ACCCATTACCCATGTATCTGACA 58.956 43.478 0.00 0.00 43.97 3.58
109 111 7.343316 CCCTATTAGGATAAGGGTATGAGACAG 59.657 44.444 11.52 0.00 37.67 3.51
190 193 3.326747 GGCATGAGATCGTATAACCCAC 58.673 50.000 0.00 0.00 0.00 4.61
196 199 1.410153 GATCGTATAACCCACACCCGT 59.590 52.381 0.00 0.00 0.00 5.28
202 205 2.548464 TAACCCACACCCGTATACCT 57.452 50.000 0.00 0.00 0.00 3.08
203 206 2.548464 AACCCACACCCGTATACCTA 57.452 50.000 0.00 0.00 0.00 3.08
234 237 9.561069 ACCCATATAAAATCTCACAAGTATGAC 57.439 33.333 0.00 0.00 0.00 3.06
259 263 6.369065 CCAAGTTACCTCTACACTTTGTCATC 59.631 42.308 0.00 0.00 0.00 2.92
265 269 7.062749 ACCTCTACACTTTGTCATCAGTTTA 57.937 36.000 0.00 0.00 0.00 2.01
418 477 5.241506 ACTCCTTTTATGATGTGTTGGTGTG 59.758 40.000 0.00 0.00 0.00 3.82
419 478 4.022416 TCCTTTTATGATGTGTTGGTGTGC 60.022 41.667 0.00 0.00 0.00 4.57
490 552 4.063689 TGCTTTGCAAACATGGGTATTTG 58.936 39.130 8.05 0.00 38.57 2.32
568 631 8.077386 TGTATGTTTTGACGCGTATAGATATGA 58.923 33.333 13.97 0.00 0.00 2.15
597 1526 3.370209 GGTAAGCTGAAGGACGGGTAAAT 60.370 47.826 0.00 0.00 34.95 1.40
600 1529 2.039879 AGCTGAAGGACGGGTAAATGTT 59.960 45.455 0.00 0.00 33.51 2.71
633 1562 2.123589 ACCCATATCACAACCCGATCA 58.876 47.619 0.00 0.00 0.00 2.92
641 1570 3.419759 AACCCGATCAACGCGTGC 61.420 61.111 14.98 1.57 41.07 5.34
650 1579 0.948141 TCAACGCGTGCACATGATCA 60.948 50.000 14.98 0.00 0.00 2.92
654 1583 0.374410 CGCGTGCACATGATCAATCA 59.626 50.000 18.64 0.00 41.70 2.57
665 1594 6.085573 CACATGATCAATCAGTTGCGTTTAA 58.914 36.000 0.00 0.00 40.64 1.52
712 1641 3.078837 TCCTTTTTCGAGGGAATTTCCG 58.921 45.455 9.31 0.00 37.43 4.30
719 1648 7.868906 TTTTCGAGGGAATTTCCGTATTTAT 57.131 32.000 10.51 0.00 37.43 1.40
768 1697 5.622346 TTTTGGTTTTAATCAGGCTTGGT 57.378 34.783 0.00 0.00 0.00 3.67
775 1704 6.230472 GTTTTAATCAGGCTTGGTCCAAAAT 58.770 36.000 5.64 0.00 0.00 1.82
826 1755 4.408694 GGTCGACCCAATTAAAATGTTCG 58.591 43.478 24.75 0.00 0.00 3.95
827 1756 4.408694 GTCGACCCAATTAAAATGTTCGG 58.591 43.478 3.51 0.00 0.00 4.30
828 1757 3.119779 TCGACCCAATTAAAATGTTCGGC 60.120 43.478 10.40 0.00 0.00 5.54
829 1758 3.517602 GACCCAATTAAAATGTTCGGCC 58.482 45.455 0.00 0.00 0.00 6.13
830 1759 3.169908 ACCCAATTAAAATGTTCGGCCT 58.830 40.909 0.00 0.00 0.00 5.19
831 1760 3.056179 ACCCAATTAAAATGTTCGGCCTG 60.056 43.478 0.00 0.00 0.00 4.85
832 1761 3.056179 CCCAATTAAAATGTTCGGCCTGT 60.056 43.478 0.00 0.00 0.00 4.00
833 1762 4.173256 CCAATTAAAATGTTCGGCCTGTC 58.827 43.478 0.00 0.00 0.00 3.51
834 1763 4.082245 CCAATTAAAATGTTCGGCCTGTCT 60.082 41.667 0.00 0.00 0.00 3.41
835 1764 4.965119 ATTAAAATGTTCGGCCTGTCTC 57.035 40.909 0.00 0.00 0.00 3.36
836 1765 2.270352 AAAATGTTCGGCCTGTCTCA 57.730 45.000 0.00 0.00 0.00 3.27
837 1766 1.813513 AAATGTTCGGCCTGTCTCAG 58.186 50.000 0.00 0.00 0.00 3.35
838 1767 0.976641 AATGTTCGGCCTGTCTCAGA 59.023 50.000 0.00 0.00 32.44 3.27
839 1768 0.976641 ATGTTCGGCCTGTCTCAGAA 59.023 50.000 0.00 0.00 32.44 3.02
840 1769 0.756294 TGTTCGGCCTGTCTCAGAAA 59.244 50.000 0.00 0.00 32.44 2.52
841 1770 1.140052 TGTTCGGCCTGTCTCAGAAAA 59.860 47.619 0.00 0.00 32.44 2.29
842 1771 2.218603 GTTCGGCCTGTCTCAGAAAAA 58.781 47.619 0.00 0.00 32.44 1.94
843 1772 2.169832 TCGGCCTGTCTCAGAAAAAG 57.830 50.000 0.00 0.00 32.44 2.27
844 1773 1.691976 TCGGCCTGTCTCAGAAAAAGA 59.308 47.619 0.00 0.00 32.44 2.52
845 1774 2.072298 CGGCCTGTCTCAGAAAAAGAG 58.928 52.381 0.00 0.00 32.44 2.85
856 1785 8.345565 TGTCTCAGAAAAAGAGCTAAAATGTTC 58.654 33.333 0.00 0.00 33.15 3.18
881 1810 1.704641 AGTGGGCCTGGAAAAGTTTC 58.295 50.000 4.53 0.00 36.46 2.78
894 1823 5.104982 TGGAAAAGTTTCTTCAGTGGCATTT 60.105 36.000 3.92 0.00 37.35 2.32
901 1830 4.002906 TCTTCAGTGGCATTTTCGTAGT 57.997 40.909 0.00 0.00 0.00 2.73
927 1856 1.172180 CGGTTCTGGCAAAAGCTCCA 61.172 55.000 0.89 0.00 0.00 3.86
993 1922 1.328279 CCACTTTCACTCCCCCAAAC 58.672 55.000 0.00 0.00 0.00 2.93
1666 2596 4.148825 CGGAGCCCTCTGAACCGG 62.149 72.222 0.00 0.00 39.92 5.28
1667 2597 2.683933 GGAGCCCTCTGAACCGGA 60.684 66.667 9.46 0.00 0.00 5.14
1668 2598 2.726351 GGAGCCCTCTGAACCGGAG 61.726 68.421 9.46 0.00 36.69 4.63
1669 2599 1.682684 GAGCCCTCTGAACCGGAGA 60.683 63.158 9.46 0.00 39.05 3.71
1670 2600 1.229209 AGCCCTCTGAACCGGAGAA 60.229 57.895 9.46 0.00 39.05 2.87
1671 2601 1.219393 GCCCTCTGAACCGGAGAAG 59.781 63.158 9.46 1.46 39.05 2.85
1672 2602 1.901085 CCCTCTGAACCGGAGAAGG 59.099 63.158 9.46 7.31 39.05 3.46
1673 2603 1.617947 CCCTCTGAACCGGAGAAGGG 61.618 65.000 9.46 12.95 39.05 3.95
1674 2604 0.614979 CCTCTGAACCGGAGAAGGGA 60.615 60.000 9.46 0.00 39.05 4.20
1675 2605 0.820871 CTCTGAACCGGAGAAGGGAG 59.179 60.000 9.46 3.99 39.05 4.30
1676 2606 0.408309 TCTGAACCGGAGAAGGGAGA 59.592 55.000 9.46 0.00 35.02 3.71
1677 2607 0.820871 CTGAACCGGAGAAGGGAGAG 59.179 60.000 9.46 0.00 35.02 3.20
1758 2853 0.174617 CTGAGCCGGAGAAAGGAGAC 59.825 60.000 5.05 0.00 0.00 3.36
1962 3057 2.722201 GGTGACGCGGAAGGAGGAT 61.722 63.158 12.47 0.00 0.00 3.24
2030 3125 1.546589 ATTACACGCCGTGGGAGGAA 61.547 55.000 22.60 7.62 37.94 3.36
2103 3198 4.062032 GGGGGCCAGGGAAGGTTC 62.062 72.222 4.39 0.00 0.00 3.62
2180 3275 1.001641 AGGAACATGAGGTGGCTGC 60.002 57.895 0.00 0.00 0.00 5.25
2214 3309 1.363744 CTGGCAATCTGTCGACTTCC 58.636 55.000 17.92 8.87 0.00 3.46
2245 3340 1.648568 AGGATGGTGAAGAGGAGGAGA 59.351 52.381 0.00 0.00 0.00 3.71
2249 3344 1.199615 GGTGAAGAGGAGGAGAAGGG 58.800 60.000 0.00 0.00 0.00 3.95
2255 3350 1.550374 AGGAGGAGAAGGGGGAGGA 60.550 63.158 0.00 0.00 0.00 3.71
2256 3351 1.162951 AGGAGGAGAAGGGGGAGGAA 61.163 60.000 0.00 0.00 0.00 3.36
2257 3352 0.692756 GGAGGAGAAGGGGGAGGAAG 60.693 65.000 0.00 0.00 0.00 3.46
2528 3728 1.335145 GAAGATGATGGCAATGGGGG 58.665 55.000 0.00 0.00 0.00 5.40
2565 3765 1.722034 GAGATGTAGGAGATGGGGCA 58.278 55.000 0.00 0.00 0.00 5.36
2756 3956 0.335361 AAGAGCTCCGACCCTTCCTA 59.665 55.000 10.93 0.00 0.00 2.94
2832 4032 7.437713 TCCTGTGGTGATAATCTTCACTTAT 57.562 36.000 4.75 0.00 44.39 1.73
2986 4186 2.105821 CTGTGGGTTTCAGGAAGGTGTA 59.894 50.000 0.00 0.00 0.00 2.90
3090 4290 8.895932 ATCATAGTTTTATTTCGTTGCAGTTC 57.104 30.769 0.00 0.00 0.00 3.01
3091 4291 7.866729 TCATAGTTTTATTTCGTTGCAGTTCA 58.133 30.769 0.00 0.00 0.00 3.18
3114 4314 6.430308 TCAGTACTAGAATGGGTAAGATAGCG 59.570 42.308 0.00 0.00 0.00 4.26
3149 4349 5.601583 TGTAACTCACTGAACTAACACCA 57.398 39.130 0.00 0.00 0.00 4.17
3183 4383 6.036953 CCATCTTGTCAGAGTGCTATTCTTTC 59.963 42.308 0.00 0.00 30.36 2.62
3260 4460 7.618502 TCATAAATATTGCCACGTTGTAACT 57.381 32.000 0.00 0.00 0.00 2.24
3368 4918 5.684704 TGGTTTATAGAGCAGATTCTTGGG 58.315 41.667 0.00 0.00 0.00 4.12
3400 4950 7.658179 ATGGCATGTTTACATACTCTTATCG 57.342 36.000 0.00 0.00 34.26 2.92
3479 5029 3.147629 CATCTTCAATGATGCCTCTCCC 58.852 50.000 0.00 0.00 37.59 4.30
3543 5093 3.838565 TCAAGACACCCAAATGGCTTTA 58.161 40.909 0.00 0.00 46.23 1.85
3596 5146 4.891992 TTCCTCTTGTAACTCTTGGGAG 57.108 45.455 0.00 0.00 44.62 4.30
3627 5177 9.933723 TTGGTTTATTGTAGTCTTACTCCTTAC 57.066 33.333 0.00 0.00 0.00 2.34
3676 5226 7.327214 AGACTGGCAAACTTGTTTTCATTTTA 58.673 30.769 0.00 0.00 0.00 1.52
3677 5227 7.821846 AGACTGGCAAACTTGTTTTCATTTTAA 59.178 29.630 0.00 0.00 0.00 1.52
3702 5252 3.165498 GCTTTCGTAGCCACACCG 58.835 61.111 1.58 0.00 44.48 4.94
3749 5299 6.983474 TTTATGTGTATGCGATATCATGGG 57.017 37.500 3.12 0.00 0.00 4.00
3824 5374 9.286946 CTCAAGATATCTTTGCAGAAAATGAAC 57.713 33.333 15.49 0.00 33.11 3.18
3830 5380 7.858052 ATCTTTGCAGAAAATGAACTTAACG 57.142 32.000 0.00 0.00 30.76 3.18
3831 5381 7.022055 TCTTTGCAGAAAATGAACTTAACGA 57.978 32.000 0.00 0.00 0.00 3.85
3832 5382 6.910433 TCTTTGCAGAAAATGAACTTAACGAC 59.090 34.615 0.00 0.00 0.00 4.34
3842 5392 8.623310 AAATGAACTTAACGACACGAAAATTT 57.377 26.923 0.00 0.00 0.00 1.82
3981 5533 2.696707 ACGGGAAGAGACAGTTTGTACA 59.303 45.455 0.00 0.00 0.00 2.90
4030 5582 1.083489 GACGGCCGTTTTCATCATGA 58.917 50.000 34.65 0.00 0.00 3.07
4069 5635 1.218316 GACTGAATTCCGCTCGGGT 59.782 57.895 8.59 0.00 37.00 5.28
4070 5636 0.806492 GACTGAATTCCGCTCGGGTC 60.806 60.000 8.59 3.24 37.00 4.46
4071 5637 1.218047 CTGAATTCCGCTCGGGTCA 59.782 57.895 8.59 8.81 37.00 4.02
4251 5818 2.573009 TCTGAATCAAGGTGCTGATCCA 59.427 45.455 0.00 0.00 34.90 3.41
4267 5834 1.377725 CCAGCGGCACTTCCAATCT 60.378 57.895 1.45 0.00 34.01 2.40
4385 5952 6.701145 TGTAAGTGTCCAGTTTTTGCATAA 57.299 33.333 0.00 0.00 0.00 1.90
4462 6029 2.347114 CGTCAGGTGGTGGATGCA 59.653 61.111 0.00 0.00 0.00 3.96
4688 6264 1.068083 CAGGATACATGCTCGCCGT 59.932 57.895 0.00 0.00 41.41 5.68
4816 6433 1.207593 GTGGTCATGCACGTGCTTC 59.792 57.895 37.59 23.95 42.66 3.86
4886 6507 9.356433 TGCAAATCAAGTATTATGATGTTTGTG 57.644 29.630 0.00 0.00 37.58 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.605319 GCGACACCCCATCTGAACAA 60.605 55.000 0.00 0.00 0.00 2.83
3 4 2.264480 CGCGACACCCCATCTGAA 59.736 61.111 0.00 0.00 0.00 3.02
19 20 4.155733 TACATCCAGCCCCACGCG 62.156 66.667 3.53 3.53 44.76 6.01
20 21 2.203070 CTACATCCAGCCCCACGC 60.203 66.667 0.00 0.00 37.98 5.34
21 22 2.505982 CCTACATCCAGCCCCACG 59.494 66.667 0.00 0.00 0.00 4.94
22 23 1.062488 ATCCCTACATCCAGCCCCAC 61.062 60.000 0.00 0.00 0.00 4.61
23 24 1.061905 CATCCCTACATCCAGCCCCA 61.062 60.000 0.00 0.00 0.00 4.96
24 25 1.763770 CATCCCTACATCCAGCCCC 59.236 63.158 0.00 0.00 0.00 5.80
25 26 1.763770 CCATCCCTACATCCAGCCC 59.236 63.158 0.00 0.00 0.00 5.19
26 27 1.073897 GCCATCCCTACATCCAGCC 59.926 63.158 0.00 0.00 0.00 4.85
27 28 0.183492 TTGCCATCCCTACATCCAGC 59.817 55.000 0.00 0.00 0.00 4.85
28 29 2.107031 TCATTGCCATCCCTACATCCAG 59.893 50.000 0.00 0.00 0.00 3.86
29 30 2.107031 CTCATTGCCATCCCTACATCCA 59.893 50.000 0.00 0.00 0.00 3.41
30 31 2.107204 ACTCATTGCCATCCCTACATCC 59.893 50.000 0.00 0.00 0.00 3.51
31 32 3.498774 ACTCATTGCCATCCCTACATC 57.501 47.619 0.00 0.00 0.00 3.06
32 33 3.073062 GGTACTCATTGCCATCCCTACAT 59.927 47.826 0.00 0.00 0.00 2.29
68 69 6.731919 TCCTAATAGGGTTTTTACCTGTCAGA 59.268 38.462 6.46 0.00 39.12 3.27
71 72 9.557061 CTTATCCTAATAGGGTTTTTACCTGTC 57.443 37.037 6.46 0.00 39.12 3.51
74 75 8.053776 CCCTTATCCTAATAGGGTTTTTACCT 57.946 38.462 6.46 0.00 42.15 3.08
139 141 2.500098 CTCTACCCGGTGGATTTGAGAA 59.500 50.000 3.76 0.00 34.81 2.87
151 154 2.571216 CCATACCCGCTCTACCCGG 61.571 68.421 0.00 0.00 45.17 5.73
190 193 3.896888 TGGGTACATTAGGTATACGGGTG 59.103 47.826 0.00 0.00 33.76 4.61
203 206 9.920946 ACTTGTGAGATTTTATATGGGTACATT 57.079 29.630 0.00 0.00 38.53 2.71
238 241 6.456501 ACTGATGACAAAGTGTAGAGGTAAC 58.543 40.000 0.00 0.00 0.00 2.50
265 269 9.048446 ACACGTAGTTGTACATTTTAAGTTCAT 57.952 29.630 0.00 0.00 41.61 2.57
282 307 7.808856 ACAACAATAAACAAACAACACGTAGTT 59.191 29.630 0.00 0.00 41.61 2.24
287 312 8.004344 TCAAAACAACAATAAACAAACAACACG 58.996 29.630 0.00 0.00 0.00 4.49
337 392 8.729805 AACAACACATTCCAATAAACAACATT 57.270 26.923 0.00 0.00 0.00 2.71
392 448 7.121168 CACACCAACACATCATAAAAGGAGTAT 59.879 37.037 0.00 0.00 0.00 2.12
395 451 5.702865 CACACCAACACATCATAAAAGGAG 58.297 41.667 0.00 0.00 0.00 3.69
397 453 4.236935 GCACACCAACACATCATAAAAGG 58.763 43.478 0.00 0.00 0.00 3.11
398 454 3.913763 CGCACACCAACACATCATAAAAG 59.086 43.478 0.00 0.00 0.00 2.27
400 456 2.881513 ACGCACACCAACACATCATAAA 59.118 40.909 0.00 0.00 0.00 1.40
405 464 3.552604 ATTTACGCACACCAACACATC 57.447 42.857 0.00 0.00 0.00 3.06
444 503 0.613260 TTTGAGCGGCACATAGTCCT 59.387 50.000 1.45 0.00 0.00 3.85
445 504 1.668419 ATTTGAGCGGCACATAGTCC 58.332 50.000 1.45 0.00 0.00 3.85
455 517 1.657094 GCAAAGCATCAATTTGAGCGG 59.343 47.619 5.21 5.84 39.50 5.52
490 552 1.772836 AGTCAGGTACCCACGGATAC 58.227 55.000 8.74 0.00 0.00 2.24
505 568 1.531423 GTCACCCGACAGAGTAGTCA 58.469 55.000 0.00 0.00 42.13 3.41
507 570 0.035881 TCGTCACCCGACAGAGTAGT 59.964 55.000 0.00 0.00 42.74 2.73
547 610 8.003508 TCATTCATATCTATACGCGTCAAAAC 57.996 34.615 18.63 0.00 0.00 2.43
548 611 8.647226 CATCATTCATATCTATACGCGTCAAAA 58.353 33.333 18.63 0.00 0.00 2.44
556 619 8.417106 AGCTTACCCATCATTCATATCTATACG 58.583 37.037 0.00 0.00 0.00 3.06
568 631 3.682718 CGTCCTTCAGCTTACCCATCATT 60.683 47.826 0.00 0.00 0.00 2.57
633 1562 0.804364 ATTGATCATGTGCACGCGTT 59.196 45.000 10.22 0.20 0.00 4.84
641 1570 3.752412 ACGCAACTGATTGATCATGTG 57.248 42.857 0.00 0.00 38.15 3.21
685 1614 5.966742 ATTCCCTCGAAAAAGGAGAAAAG 57.033 39.130 0.00 0.00 38.87 2.27
689 1618 4.332828 GGAAATTCCCTCGAAAAAGGAGA 58.667 43.478 0.00 0.00 38.87 3.71
690 1619 3.127030 CGGAAATTCCCTCGAAAAAGGAG 59.873 47.826 6.42 0.00 38.87 3.69
691 1620 3.078837 CGGAAATTCCCTCGAAAAAGGA 58.921 45.455 6.42 0.00 38.87 3.36
698 1627 7.868906 AAAATAAATACGGAAATTCCCTCGA 57.131 32.000 6.42 0.00 31.13 4.04
741 1670 9.061435 CCAAGCCTGATTAAAACCAAAATTTTA 57.939 29.630 2.44 0.00 33.80 1.52
742 1671 7.559533 ACCAAGCCTGATTAAAACCAAAATTTT 59.440 29.630 0.00 0.00 35.89 1.82
743 1672 7.059788 ACCAAGCCTGATTAAAACCAAAATTT 58.940 30.769 0.00 0.00 0.00 1.82
744 1673 6.600388 ACCAAGCCTGATTAAAACCAAAATT 58.400 32.000 0.00 0.00 0.00 1.82
760 1689 2.800250 CTCAGATTTTGGACCAAGCCT 58.200 47.619 7.07 3.39 0.00 4.58
768 1697 1.302949 CCCGGGCTCAGATTTTGGA 59.697 57.895 8.08 0.00 0.00 3.53
815 1744 3.745799 TGAGACAGGCCGAACATTTTAA 58.254 40.909 0.00 0.00 0.00 1.52
816 1745 3.007506 TCTGAGACAGGCCGAACATTTTA 59.992 43.478 0.00 0.00 31.51 1.52
817 1746 2.154462 CTGAGACAGGCCGAACATTTT 58.846 47.619 0.00 0.00 0.00 1.82
818 1747 1.347707 TCTGAGACAGGCCGAACATTT 59.652 47.619 0.00 0.00 31.51 2.32
819 1748 0.976641 TCTGAGACAGGCCGAACATT 59.023 50.000 0.00 0.00 31.51 2.71
820 1749 0.976641 TTCTGAGACAGGCCGAACAT 59.023 50.000 0.00 0.00 31.51 2.71
821 1750 0.756294 TTTCTGAGACAGGCCGAACA 59.244 50.000 0.00 0.00 31.51 3.18
822 1751 1.878953 TTTTCTGAGACAGGCCGAAC 58.121 50.000 0.00 0.00 31.51 3.95
823 1752 2.104111 TCTTTTTCTGAGACAGGCCGAA 59.896 45.455 0.00 0.00 31.51 4.30
824 1753 1.691976 TCTTTTTCTGAGACAGGCCGA 59.308 47.619 0.00 0.00 31.51 5.54
825 1754 2.072298 CTCTTTTTCTGAGACAGGCCG 58.928 52.381 0.00 0.00 33.68 6.13
826 1755 1.809547 GCTCTTTTTCTGAGACAGGCC 59.190 52.381 0.00 0.00 33.68 5.19
827 1756 2.777094 AGCTCTTTTTCTGAGACAGGC 58.223 47.619 0.00 0.00 33.68 4.85
828 1757 6.867662 TTTTAGCTCTTTTTCTGAGACAGG 57.132 37.500 0.00 0.00 33.68 4.00
829 1758 7.869800 ACATTTTAGCTCTTTTTCTGAGACAG 58.130 34.615 0.00 0.00 33.68 3.51
830 1759 7.807977 ACATTTTAGCTCTTTTTCTGAGACA 57.192 32.000 0.00 0.00 33.68 3.41
831 1760 7.532209 CGAACATTTTAGCTCTTTTTCTGAGAC 59.468 37.037 0.00 0.00 33.68 3.36
832 1761 7.307989 CCGAACATTTTAGCTCTTTTTCTGAGA 60.308 37.037 0.00 0.00 33.68 3.27
833 1762 6.798959 CCGAACATTTTAGCTCTTTTTCTGAG 59.201 38.462 0.00 0.00 34.87 3.35
834 1763 6.668323 CCGAACATTTTAGCTCTTTTTCTGA 58.332 36.000 0.00 0.00 0.00 3.27
835 1764 5.343325 GCCGAACATTTTAGCTCTTTTTCTG 59.657 40.000 0.00 0.00 0.00 3.02
836 1765 5.461526 GCCGAACATTTTAGCTCTTTTTCT 58.538 37.500 0.00 0.00 0.00 2.52
837 1766 4.621460 GGCCGAACATTTTAGCTCTTTTTC 59.379 41.667 0.00 0.00 0.00 2.29
838 1767 4.280929 AGGCCGAACATTTTAGCTCTTTTT 59.719 37.500 0.00 0.00 0.00 1.94
839 1768 3.826729 AGGCCGAACATTTTAGCTCTTTT 59.173 39.130 0.00 0.00 0.00 2.27
840 1769 3.421844 AGGCCGAACATTTTAGCTCTTT 58.578 40.909 0.00 0.00 0.00 2.52
841 1770 3.073274 AGGCCGAACATTTTAGCTCTT 57.927 42.857 0.00 0.00 0.00 2.85
842 1771 2.789409 AGGCCGAACATTTTAGCTCT 57.211 45.000 0.00 0.00 0.00 4.09
843 1772 3.309954 CACTAGGCCGAACATTTTAGCTC 59.690 47.826 0.00 0.00 0.00 4.09
844 1773 3.270877 CACTAGGCCGAACATTTTAGCT 58.729 45.455 0.00 0.00 0.00 3.32
845 1774 2.354821 CCACTAGGCCGAACATTTTAGC 59.645 50.000 0.00 0.00 0.00 3.09
870 1799 3.360867 TGCCACTGAAGAAACTTTTCCA 58.639 40.909 0.00 0.00 37.92 3.53
881 1810 4.749245 AACTACGAAAATGCCACTGAAG 57.251 40.909 0.00 0.00 0.00 3.02
927 1856 2.224892 GGAGAGAGGGGTTTGAGCTTTT 60.225 50.000 0.00 0.00 0.00 2.27
1199 2129 2.664825 GAGGATCCCAGATCGGAGG 58.335 63.158 8.55 0.65 36.56 4.30
1485 2415 1.026718 CCGGCACTTCATTCTCCACC 61.027 60.000 0.00 0.00 0.00 4.61
1666 2596 2.666317 CTCCTTCTCCTCTCCCTTCTC 58.334 57.143 0.00 0.00 0.00 2.87
1667 2597 1.290732 CCTCCTTCTCCTCTCCCTTCT 59.709 57.143 0.00 0.00 0.00 2.85
1668 2598 1.289530 TCCTCCTTCTCCTCTCCCTTC 59.710 57.143 0.00 0.00 0.00 3.46
1669 2599 1.290732 CTCCTCCTTCTCCTCTCCCTT 59.709 57.143 0.00 0.00 0.00 3.95
1670 2600 0.933700 CTCCTCCTTCTCCTCTCCCT 59.066 60.000 0.00 0.00 0.00 4.20
1671 2601 0.105709 CCTCCTCCTTCTCCTCTCCC 60.106 65.000 0.00 0.00 0.00 4.30
1672 2602 0.759060 GCCTCCTCCTTCTCCTCTCC 60.759 65.000 0.00 0.00 0.00 3.71
1673 2603 0.759060 GGCCTCCTCCTTCTCCTCTC 60.759 65.000 0.00 0.00 0.00 3.20
1674 2604 1.313129 GGCCTCCTCCTTCTCCTCT 59.687 63.158 0.00 0.00 0.00 3.69
1675 2605 1.764454 GGGCCTCCTCCTTCTCCTC 60.764 68.421 0.84 0.00 0.00 3.71
1676 2606 2.370633 GGGCCTCCTCCTTCTCCT 59.629 66.667 0.84 0.00 0.00 3.69
1677 2607 2.770475 GGGGCCTCCTCCTTCTCC 60.770 72.222 0.84 0.00 0.00 3.71
1758 2853 1.456705 CCCCTCTTCCTCCTCCTCG 60.457 68.421 0.00 0.00 0.00 4.63
1962 3057 0.970937 CCAGTTCAGGAGGCTCCGTA 60.971 60.000 27.11 16.66 42.75 4.02
2030 3125 0.173708 GACCGTCGGAGCATTCTTCT 59.826 55.000 20.51 0.00 0.00 2.85
2091 3186 1.884067 GCTCTTGTGAACCTTCCCTGG 60.884 57.143 0.00 0.00 0.00 4.45
2103 3198 2.263077 CTTGTACTAGCCGCTCTTGTG 58.737 52.381 0.00 0.00 33.04 3.33
2180 3275 1.664873 CCAGGCTGATCTCTAGGCG 59.335 63.158 17.94 0.00 44.59 5.52
2184 3279 2.367894 CAGATTGCCAGGCTGATCTCTA 59.632 50.000 21.43 0.00 32.87 2.43
2214 3309 1.086696 CACCATCCTTTACCGCTGTG 58.913 55.000 0.00 0.00 0.00 3.66
2245 3340 0.253394 CCCTTCTCTTCCTCCCCCTT 60.253 60.000 0.00 0.00 0.00 3.95
2249 3344 0.029577 ATCCCCCTTCTCTTCCTCCC 60.030 60.000 0.00 0.00 0.00 4.30
2255 3350 2.493091 CCACCTTATCCCCCTTCTCTT 58.507 52.381 0.00 0.00 0.00 2.85
2256 3351 1.977202 GCCACCTTATCCCCCTTCTCT 60.977 57.143 0.00 0.00 0.00 3.10
2257 3352 0.474614 GCCACCTTATCCCCCTTCTC 59.525 60.000 0.00 0.00 0.00 2.87
2338 3433 2.031516 CACACTGAGCAGAAGCCGG 61.032 63.158 4.21 0.00 43.56 6.13
2339 3434 2.675056 GCACACTGAGCAGAAGCCG 61.675 63.158 4.21 0.00 43.56 5.52
2528 3728 2.079925 CTCCTCTACTGCCAAGCAAAC 58.920 52.381 0.00 0.00 38.41 2.93
2565 3765 1.145738 ACAGCACATTCCTCCACCTTT 59.854 47.619 0.00 0.00 0.00 3.11
2756 3956 9.638176 ATCTCCAGCATCTAAGACATAATTTTT 57.362 29.630 0.00 0.00 0.00 1.94
2832 4032 5.185454 ACGCCATCATCAATTCTTCTACAA 58.815 37.500 0.00 0.00 0.00 2.41
2846 4046 2.029110 CCAAAAGGACAAACGCCATCAT 60.029 45.455 0.00 0.00 0.00 2.45
2849 4049 0.678950 CCCAAAAGGACAAACGCCAT 59.321 50.000 0.00 0.00 38.24 4.40
2986 4186 7.974504 ACGGAGGGAGTATTCAACATTATAAT 58.025 34.615 0.00 0.00 0.00 1.28
3031 4231 4.192317 GGACAAGCTCTCGGTTTCATTAT 58.808 43.478 0.00 0.00 0.00 1.28
3041 4241 0.108424 CTCAAGGGGACAAGCTCTCG 60.108 60.000 0.00 0.00 0.00 4.04
3080 4280 4.327357 CCATTCTAGTACTGAACTGCAACG 59.673 45.833 5.39 0.00 39.39 4.10
3090 4290 6.207025 ACGCTATCTTACCCATTCTAGTACTG 59.793 42.308 5.39 0.00 0.00 2.74
3091 4291 6.305411 ACGCTATCTTACCCATTCTAGTACT 58.695 40.000 0.00 0.00 0.00 2.73
3149 4349 4.019501 ACTCTGACAAGATGGAGCTTCAAT 60.020 41.667 0.00 0.00 0.00 2.57
3183 4383 5.007430 CCTGCTGCAAGACATAGAAACATAG 59.993 44.000 3.02 0.00 34.07 2.23
3260 4460 5.755409 TGAAACTTAGAGGGCTCACAATA 57.245 39.130 0.00 0.00 0.00 1.90
3368 4918 3.199677 TGTAAACATGCCATACGGTAGC 58.800 45.455 0.00 0.00 33.28 3.58
3400 4950 1.376466 ACATGGAGTGTGGGAGCAC 59.624 57.895 0.00 0.00 40.28 4.40
3470 5020 4.749323 CAAGCATTGGGAGAGGCA 57.251 55.556 0.00 0.00 43.94 4.75
3543 5093 7.612677 ACTACGTAAGAAAATCAAGGATCTGT 58.387 34.615 0.00 0.00 43.62 3.41
3627 5177 3.388308 CCTCTTCAGGTATCGCTTCATG 58.612 50.000 0.00 0.00 34.60 3.07
3729 5279 3.054875 AGCCCATGATATCGCATACACAT 60.055 43.478 0.00 0.00 0.00 3.21
3747 5297 6.401047 AAGGTACAAAAGTTTTAGAAGCCC 57.599 37.500 0.00 0.00 0.00 5.19
3749 5299 6.978659 AGCAAAGGTACAAAAGTTTTAGAAGC 59.021 34.615 0.00 0.00 0.00 3.86
3791 5341 7.040494 TCTGCAAAGATATCTTGAGAACTCTG 58.960 38.462 18.61 11.16 36.12 3.35
3824 5374 5.331235 GCCAACAAATTTTCGTGTCGTTAAG 60.331 40.000 0.00 0.00 0.00 1.85
3828 5378 2.456010 GCCAACAAATTTTCGTGTCGT 58.544 42.857 0.00 0.00 0.00 4.34
3829 5379 1.446465 CGCCAACAAATTTTCGTGTCG 59.554 47.619 0.00 0.00 0.00 4.35
3830 5380 2.215363 CACGCCAACAAATTTTCGTGTC 59.785 45.455 10.46 0.00 41.33 3.67
3831 5381 2.189342 CACGCCAACAAATTTTCGTGT 58.811 42.857 10.46 0.00 41.33 4.49
3832 5382 1.520590 CCACGCCAACAAATTTTCGTG 59.479 47.619 11.30 11.30 44.50 4.35
3842 5392 3.858868 GAGCTCGTCCACGCCAACA 62.859 63.158 0.00 0.00 39.60 3.33
3955 5505 2.282958 TGTCTCTTCCCGTCCGCT 60.283 61.111 0.00 0.00 0.00 5.52
4030 5582 2.814805 AGCAGGGATACACATTGCTT 57.185 45.000 0.00 0.00 42.01 3.91
4069 5635 5.546499 AGTTTAATGGAGTTGGTAGGTCTGA 59.454 40.000 0.00 0.00 0.00 3.27
4070 5636 5.805728 AGTTTAATGGAGTTGGTAGGTCTG 58.194 41.667 0.00 0.00 0.00 3.51
4071 5637 5.045797 GGAGTTTAATGGAGTTGGTAGGTCT 60.046 44.000 0.00 0.00 0.00 3.85
4251 5818 1.589716 GCAAGATTGGAAGTGCCGCT 61.590 55.000 0.00 0.00 40.66 5.52
4267 5834 0.034186 CCATAGTCCAGGCAAGGCAA 60.034 55.000 0.00 0.00 0.00 4.52
4385 5952 9.252962 GTGATGTTGAACAAATCTGAAGAAATT 57.747 29.630 0.62 0.00 0.00 1.82
4462 6029 3.305608 GCTTGCTGCCACTTGTAGAAATT 60.306 43.478 0.00 0.00 35.15 1.82
4886 6507 2.095059 CACTTGGCTGCTAACCAATGAC 60.095 50.000 0.00 0.00 45.84 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.