Multiple sequence alignment - TraesCS3A01G173100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G173100 chr3A 100.000 3754 0 0 1 3754 191008798 191005045 0.000000e+00 6933.0
1 TraesCS3A01G173100 chr3A 91.540 1584 95 21 2194 3754 190228524 190226957 0.000000e+00 2146.0
2 TraesCS3A01G173100 chr3A 91.672 1549 96 19 2194 3722 191253506 191251971 0.000000e+00 2115.0
3 TraesCS3A01G173100 chr3A 88.243 1582 132 39 2195 3743 190094122 190092562 0.000000e+00 1842.0
4 TraesCS3A01G173100 chr3A 94.512 820 34 5 2195 3014 188112691 188113499 0.000000e+00 1254.0
5 TraesCS3A01G173100 chr3A 89.308 954 71 12 1 934 190096118 190095176 0.000000e+00 1168.0
6 TraesCS3A01G173100 chr3A 89.817 766 59 8 931 1681 190094903 190094142 0.000000e+00 965.0
7 TraesCS3A01G173100 chr3A 85.863 863 77 21 1 834 188100225 188101071 0.000000e+00 876.0
8 TraesCS3A01G173100 chr3A 88.548 620 43 13 834 1435 188101147 188101756 0.000000e+00 726.0
9 TraesCS3A01G173100 chr3A 87.638 453 46 4 1231 1683 190228974 190228532 5.560000e-143 518.0
10 TraesCS3A01G173100 chr3A 87.638 453 46 4 1231 1683 191253956 191253514 5.560000e-143 518.0
11 TraesCS3A01G173100 chr3A 91.304 253 19 1 1427 1679 188112420 188112669 3.590000e-90 342.0
12 TraesCS3A01G173100 chr3D 93.830 1718 63 19 1 1687 161499719 161498014 0.000000e+00 2545.0
13 TraesCS3A01G173100 chr3D 95.452 1583 60 8 2176 3754 161497974 161496400 0.000000e+00 2514.0
14 TraesCS3A01G173100 chr3D 92.716 1565 96 13 2194 3754 161596221 161594671 0.000000e+00 2242.0
15 TraesCS3A01G173100 chr3D 89.690 1581 111 33 2195 3743 161401331 161399771 0.000000e+00 1969.0
16 TraesCS3A01G173100 chr3D 88.428 1132 79 26 1 1104 161403685 161402578 0.000000e+00 1317.0
17 TraesCS3A01G173100 chr3D 89.205 528 39 7 1170 1682 161401874 161401350 0.000000e+00 643.0
18 TraesCS3A01G173100 chr3D 88.496 452 45 3 1231 1682 161596674 161596230 1.190000e-149 540.0
19 TraesCS3A01G173100 chr3D 100.000 53 0 0 2149 2201 161498028 161497976 8.580000e-17 99.0
20 TraesCS3A01G173100 chr3B 92.449 1576 90 12 2194 3754 238113156 238111595 0.000000e+00 2224.0
21 TraesCS3A01G173100 chr3B 90.932 1588 108 24 2176 3743 237972987 237971416 0.000000e+00 2102.0
22 TraesCS3A01G173100 chr3B 89.286 1708 126 25 1 1680 237735495 237733817 0.000000e+00 2087.0
23 TraesCS3A01G173100 chr3B 88.243 1582 114 39 2195 3743 237733796 237732254 0.000000e+00 1825.0
24 TraesCS3A01G173100 chr3B 96.982 762 21 1 928 1687 237973779 237973018 0.000000e+00 1279.0
25 TraesCS3A01G173100 chr3B 97.222 468 12 1 1687 2154 30436430 30435964 0.000000e+00 791.0
26 TraesCS3A01G173100 chr3B 84.271 782 80 16 1 743 237978115 237977338 0.000000e+00 723.0
27 TraesCS3A01G173100 chr3B 84.483 522 49 17 1177 1682 238113670 238113165 1.570000e-133 486.0
28 TraesCS3A01G173100 chr3B 100.000 49 0 0 2149 2197 237973032 237972984 1.440000e-14 91.6
29 TraesCS3A01G173100 chr3B 83.178 107 3 3 841 932 237977215 237977109 2.400000e-12 84.2
30 TraesCS3A01G173100 chr7A 98.932 468 4 1 1687 2153 14464030 14463563 0.000000e+00 835.0
31 TraesCS3A01G173100 chr7A 97.863 468 9 1 1685 2152 629511479 629511013 0.000000e+00 808.0
32 TraesCS3A01G173100 chr7A 97.650 468 10 1 1686 2153 700028334 700028800 0.000000e+00 802.0
33 TraesCS3A01G173100 chr7A 97.210 466 12 1 1687 2152 439574719 439574255 0.000000e+00 787.0
34 TraesCS3A01G173100 chr6B 98.929 467 4 1 1687 2153 63365578 63365113 0.000000e+00 833.0
35 TraesCS3A01G173100 chr7B 98.927 466 4 1 1687 2152 740239655 740239191 0.000000e+00 832.0
36 TraesCS3A01G173100 chr7B 96.694 484 11 5 1671 2153 674480129 674479650 0.000000e+00 800.0
37 TraesCS3A01G173100 chrUn 98.081 469 8 1 1685 2153 8822157 8821690 0.000000e+00 815.0
38 TraesCS3A01G173100 chr4D 84.789 355 42 8 484 834 9548103 9548449 2.780000e-91 346.0
39 TraesCS3A01G173100 chr4A 90.500 200 18 1 480 678 555535884 555536083 2.880000e-66 263.0
40 TraesCS3A01G173100 chr6D 90.184 163 16 0 477 639 281926087 281926249 2.940000e-51 213.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G173100 chr3A 191005045 191008798 3753 True 6933.000000 6933 100.000000 1 3754 1 chr3A.!!$R1 3753
1 TraesCS3A01G173100 chr3A 190226957 190228974 2017 True 1332.000000 2146 89.589000 1231 3754 2 chr3A.!!$R3 2523
2 TraesCS3A01G173100 chr3A 190092562 190096118 3556 True 1325.000000 1842 89.122667 1 3743 3 chr3A.!!$R2 3742
3 TraesCS3A01G173100 chr3A 191251971 191253956 1985 True 1316.500000 2115 89.655000 1231 3722 2 chr3A.!!$R4 2491
4 TraesCS3A01G173100 chr3A 188100225 188101756 1531 False 801.000000 876 87.205500 1 1435 2 chr3A.!!$F1 1434
5 TraesCS3A01G173100 chr3A 188112420 188113499 1079 False 798.000000 1254 92.908000 1427 3014 2 chr3A.!!$F2 1587
6 TraesCS3A01G173100 chr3D 161496400 161499719 3319 True 1719.333333 2545 96.427333 1 3754 3 chr3D.!!$R2 3753
7 TraesCS3A01G173100 chr3D 161594671 161596674 2003 True 1391.000000 2242 90.606000 1231 3754 2 chr3D.!!$R3 2523
8 TraesCS3A01G173100 chr3D 161399771 161403685 3914 True 1309.666667 1969 89.107667 1 3743 3 chr3D.!!$R1 3742
9 TraesCS3A01G173100 chr3B 237732254 237735495 3241 True 1956.000000 2087 88.764500 1 3743 2 chr3B.!!$R2 3742
10 TraesCS3A01G173100 chr3B 238111595 238113670 2075 True 1355.000000 2224 88.466000 1177 3754 2 chr3B.!!$R4 2577
11 TraesCS3A01G173100 chr3B 237971416 237978115 6699 True 855.960000 2102 91.072600 1 3743 5 chr3B.!!$R3 3742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
212 232 1.055849 TTCCAGGTCAGCTGTGCTAA 58.944 50.0 14.67 0.0 36.4 3.09 F
1729 6034 0.105246 CACCCAGGCCCTCTCTATCT 60.105 60.0 0.00 0.0 0.0 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1819 6124 0.029300 GAAAGCTTTGTCACGCTGCA 59.971 50.0 18.30 0.0 36.45 4.41 R
3177 7533 0.610687 AAAGAGAGGCTCCAAGGTCG 59.389 55.0 11.71 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 139 3.748048 CGAGTGGAGAATGAAAGAGCAAA 59.252 43.478 0.00 0.00 0.00 3.68
121 140 4.394300 CGAGTGGAGAATGAAAGAGCAAAT 59.606 41.667 0.00 0.00 0.00 2.32
124 143 7.361201 CGAGTGGAGAATGAAAGAGCAAATAAA 60.361 37.037 0.00 0.00 0.00 1.40
141 160 7.343833 AGCAAATAAAAATCCATCTCACCTGAT 59.656 33.333 0.00 0.00 0.00 2.90
154 173 2.441375 TCACCTGATGGTTTCAAGGACA 59.559 45.455 0.00 0.00 46.05 4.02
212 232 1.055849 TTCCAGGTCAGCTGTGCTAA 58.944 50.000 14.67 0.00 36.40 3.09
243 263 2.622903 CTTTGTAGCCGATCCGCCGA 62.623 60.000 2.19 0.00 0.00 5.54
296 316 1.745890 CCACCGGCCGAGATCATTA 59.254 57.895 30.73 0.00 0.00 1.90
362 382 2.190578 CCCATGTCCGCCTCCTTC 59.809 66.667 0.00 0.00 0.00 3.46
374 394 2.856988 TCCTTCCCCAACGCCCTT 60.857 61.111 0.00 0.00 0.00 3.95
422 442 2.359850 TCACCATGCCAAGCCGTC 60.360 61.111 0.00 0.00 0.00 4.79
481 523 1.203001 GGGGTGTCATGGGAGAAAACA 60.203 52.381 0.00 0.00 0.00 2.83
506 548 2.945668 GCCTAGTTTGGGAGCACAATAG 59.054 50.000 0.00 0.00 0.00 1.73
629 674 3.076621 CAGAGTATTTGGCAAGCACAGA 58.923 45.455 13.59 0.00 0.00 3.41
696 741 5.941555 AGAGGTCCGAACATCTTTTAGAT 57.058 39.130 0.00 0.00 43.74 1.98
698 743 7.045126 AGAGGTCCGAACATCTTTTAGATAG 57.955 40.000 0.00 0.00 43.74 2.08
700 745 6.574350 AGGTCCGAACATCTTTTAGATAGTG 58.426 40.000 0.00 0.00 32.12 2.74
701 746 6.154706 AGGTCCGAACATCTTTTAGATAGTGT 59.845 38.462 0.00 0.00 32.12 3.55
702 747 6.255887 GGTCCGAACATCTTTTAGATAGTGTG 59.744 42.308 0.00 0.00 32.12 3.82
915 1140 9.376075 GTTAATAACCTACTTCTCCTGTTTACC 57.624 37.037 0.00 0.00 0.00 2.85
1044 4690 4.891727 GCGGTCGCCACCATCGAT 62.892 66.667 0.16 0.00 44.02 3.59
1054 4700 0.390860 CACCATCGATGACCTCCCTC 59.609 60.000 26.86 0.00 0.00 4.30
1060 4706 1.974957 TCGATGACCTCCCTCAAAACA 59.025 47.619 0.00 0.00 0.00 2.83
1152 4798 3.030652 CGCAACCTGGTGACCAAC 58.969 61.111 5.53 0.00 30.80 3.77
1301 5600 2.745884 CGTGGCCGCCATCTTGAA 60.746 61.111 16.96 0.00 35.28 2.69
1553 5858 1.857217 CCTGATCTGCGATGACGAAAG 59.143 52.381 0.00 0.00 42.66 2.62
1587 5892 1.162698 GCATCTTCTGTCTTGCTGCA 58.837 50.000 0.00 0.00 32.41 4.41
1595 5900 0.607217 TGTCTTGCTGCACATGGAGG 60.607 55.000 0.00 0.00 33.79 4.30
1612 5917 2.349755 GGTTCAGGTTGCGGGCTA 59.650 61.111 0.00 0.00 0.00 3.93
1683 5988 1.378514 GTTGGATGTCCCGCACCAT 60.379 57.895 0.00 0.00 37.93 3.55
1684 5989 1.077787 TTGGATGTCCCGCACCATC 60.078 57.895 0.00 0.00 37.93 3.51
1687 5992 4.175337 ATGTCCCGCACCATCCCG 62.175 66.667 0.00 0.00 0.00 5.14
1689 5994 4.090588 GTCCCGCACCATCCCGAA 62.091 66.667 0.00 0.00 0.00 4.30
1690 5995 3.323286 TCCCGCACCATCCCGAAA 61.323 61.111 0.00 0.00 0.00 3.46
1691 5996 2.360600 CCCGCACCATCCCGAAAA 60.361 61.111 0.00 0.00 0.00 2.29
1692 5997 1.752694 CCCGCACCATCCCGAAAAT 60.753 57.895 0.00 0.00 0.00 1.82
1693 5998 0.464735 CCCGCACCATCCCGAAAATA 60.465 55.000 0.00 0.00 0.00 1.40
1694 5999 1.604604 CCGCACCATCCCGAAAATAT 58.395 50.000 0.00 0.00 0.00 1.28
1695 6000 2.551287 CCCGCACCATCCCGAAAATATA 60.551 50.000 0.00 0.00 0.00 0.86
1696 6001 3.343617 CCGCACCATCCCGAAAATATAT 58.656 45.455 0.00 0.00 0.00 0.86
1697 6002 3.756434 CCGCACCATCCCGAAAATATATT 59.244 43.478 0.00 0.00 0.00 1.28
1698 6003 4.217550 CCGCACCATCCCGAAAATATATTT 59.782 41.667 4.81 4.81 0.00 1.40
1699 6004 5.278758 CCGCACCATCCCGAAAATATATTTT 60.279 40.000 20.77 20.77 42.24 1.82
1700 6005 6.072397 CCGCACCATCCCGAAAATATATTTTA 60.072 38.462 20.69 8.20 39.86 1.52
1701 6006 7.021196 CGCACCATCCCGAAAATATATTTTAG 58.979 38.462 20.69 19.67 39.86 1.85
1702 6007 7.094975 CGCACCATCCCGAAAATATATTTTAGA 60.095 37.037 24.38 19.45 39.86 2.10
1703 6008 8.237267 GCACCATCCCGAAAATATATTTTAGAG 58.763 37.037 24.38 15.86 39.86 2.43
1704 6009 8.237267 CACCATCCCGAAAATATATTTTAGAGC 58.763 37.037 24.38 12.54 39.86 4.09
1705 6010 7.942341 ACCATCCCGAAAATATATTTTAGAGCA 59.058 33.333 24.38 12.65 39.86 4.26
1706 6011 8.960591 CCATCCCGAAAATATATTTTAGAGCAT 58.039 33.333 24.38 13.86 39.86 3.79
1710 6015 9.722056 CCCGAAAATATATTTTAGAGCATATGC 57.278 33.333 24.38 20.36 39.86 3.14
1715 6020 9.532494 AAATATATTTTAGAGCATATGCACCCA 57.468 29.630 28.62 11.22 45.16 4.51
1716 6021 8.743085 ATATATTTTAGAGCATATGCACCCAG 57.257 34.615 28.62 0.00 45.16 4.45
1717 6022 2.936919 TTAGAGCATATGCACCCAGG 57.063 50.000 28.62 0.00 45.16 4.45
1718 6023 0.397941 TAGAGCATATGCACCCAGGC 59.602 55.000 28.62 9.12 45.16 4.85
1719 6024 1.900498 GAGCATATGCACCCAGGCC 60.900 63.158 28.62 0.00 45.16 5.19
1720 6025 2.914097 GCATATGCACCCAGGCCC 60.914 66.667 22.84 0.00 41.59 5.80
1721 6026 2.929483 CATATGCACCCAGGCCCT 59.071 61.111 0.00 0.00 0.00 5.19
1722 6027 1.228367 CATATGCACCCAGGCCCTC 60.228 63.158 0.00 0.00 0.00 4.30
1723 6028 1.386485 ATATGCACCCAGGCCCTCT 60.386 57.895 0.00 0.00 0.00 3.69
1724 6029 1.422161 ATATGCACCCAGGCCCTCTC 61.422 60.000 0.00 0.00 0.00 3.20
1725 6030 2.551856 TATGCACCCAGGCCCTCTCT 62.552 60.000 0.00 0.00 0.00 3.10
1726 6031 2.365635 GCACCCAGGCCCTCTCTA 60.366 66.667 0.00 0.00 0.00 2.43
1727 6032 1.768077 GCACCCAGGCCCTCTCTAT 60.768 63.158 0.00 0.00 0.00 1.98
1728 6033 1.763546 GCACCCAGGCCCTCTCTATC 61.764 65.000 0.00 0.00 0.00 2.08
1729 6034 0.105246 CACCCAGGCCCTCTCTATCT 60.105 60.000 0.00 0.00 0.00 1.98
1730 6035 1.148027 CACCCAGGCCCTCTCTATCTA 59.852 57.143 0.00 0.00 0.00 1.98
1731 6036 1.431243 ACCCAGGCCCTCTCTATCTAG 59.569 57.143 0.00 0.00 0.00 2.43
1732 6037 1.555967 CCAGGCCCTCTCTATCTAGC 58.444 60.000 0.00 0.00 0.00 3.42
1733 6038 1.555967 CAGGCCCTCTCTATCTAGCC 58.444 60.000 0.00 0.00 40.79 3.93
1734 6039 1.162505 AGGCCCTCTCTATCTAGCCA 58.837 55.000 0.00 0.00 42.97 4.75
1735 6040 1.721691 AGGCCCTCTCTATCTAGCCAT 59.278 52.381 0.00 0.00 42.97 4.40
1736 6041 2.107366 GGCCCTCTCTATCTAGCCATC 58.893 57.143 0.00 0.00 40.20 3.51
1737 6042 2.107366 GCCCTCTCTATCTAGCCATCC 58.893 57.143 0.00 0.00 0.00 3.51
1738 6043 2.558575 GCCCTCTCTATCTAGCCATCCA 60.559 54.545 0.00 0.00 0.00 3.41
1739 6044 3.885333 GCCCTCTCTATCTAGCCATCCAT 60.885 52.174 0.00 0.00 0.00 3.41
1740 6045 4.360889 CCCTCTCTATCTAGCCATCCATT 58.639 47.826 0.00 0.00 0.00 3.16
1741 6046 4.782156 CCCTCTCTATCTAGCCATCCATTT 59.218 45.833 0.00 0.00 0.00 2.32
1742 6047 5.250313 CCCTCTCTATCTAGCCATCCATTTT 59.750 44.000 0.00 0.00 0.00 1.82
1743 6048 6.240118 CCCTCTCTATCTAGCCATCCATTTTT 60.240 42.308 0.00 0.00 0.00 1.94
1763 6068 6.893958 TTTTTGCTTTAAGATTCGTGCAAA 57.106 29.167 6.81 6.81 44.87 3.68
1764 6069 7.475771 TTTTTGCTTTAAGATTCGTGCAAAT 57.524 28.000 10.90 0.00 45.51 2.32
1765 6070 8.581057 TTTTTGCTTTAAGATTCGTGCAAATA 57.419 26.923 10.90 4.92 45.51 1.40
1766 6071 8.755696 TTTTGCTTTAAGATTCGTGCAAATAT 57.244 26.923 10.90 0.00 45.51 1.28
1767 6072 9.847706 TTTTGCTTTAAGATTCGTGCAAATATA 57.152 25.926 10.90 0.00 45.51 0.86
1809 6114 9.607333 TCTCCCACATAGAATATATCTTGAAGT 57.393 33.333 0.00 0.00 39.71 3.01
1822 6127 9.851686 ATATATCTTGAAGTTCAAACCTATGCA 57.148 29.630 18.55 0.00 35.73 3.96
1823 6128 5.947228 TCTTGAAGTTCAAACCTATGCAG 57.053 39.130 18.55 4.64 35.73 4.41
1824 6129 4.216257 TCTTGAAGTTCAAACCTATGCAGC 59.784 41.667 18.55 0.00 35.73 5.25
1825 6130 2.483877 TGAAGTTCAAACCTATGCAGCG 59.516 45.455 2.20 0.00 0.00 5.18
1826 6131 2.185004 AGTTCAAACCTATGCAGCGT 57.815 45.000 0.00 0.00 0.00 5.07
1827 6132 1.806542 AGTTCAAACCTATGCAGCGTG 59.193 47.619 0.00 0.00 0.00 5.34
1828 6133 1.804151 GTTCAAACCTATGCAGCGTGA 59.196 47.619 0.00 0.00 0.00 4.35
1829 6134 1.438651 TCAAACCTATGCAGCGTGAC 58.561 50.000 0.00 0.00 0.00 3.67
1830 6135 1.155889 CAAACCTATGCAGCGTGACA 58.844 50.000 0.00 0.00 0.00 3.58
1831 6136 1.535028 CAAACCTATGCAGCGTGACAA 59.465 47.619 0.00 0.00 0.00 3.18
1832 6137 1.890876 AACCTATGCAGCGTGACAAA 58.109 45.000 0.00 0.00 0.00 2.83
1833 6138 1.442769 ACCTATGCAGCGTGACAAAG 58.557 50.000 0.00 0.00 0.00 2.77
1834 6139 0.097674 CCTATGCAGCGTGACAAAGC 59.902 55.000 0.00 0.00 0.00 3.51
1835 6140 1.081892 CTATGCAGCGTGACAAAGCT 58.918 50.000 0.00 1.23 42.28 3.74
1836 6141 1.466167 CTATGCAGCGTGACAAAGCTT 59.534 47.619 0.00 0.00 39.27 3.74
1837 6142 0.670162 ATGCAGCGTGACAAAGCTTT 59.330 45.000 5.69 5.69 39.27 3.51
1838 6143 0.029300 TGCAGCGTGACAAAGCTTTC 59.971 50.000 9.23 0.00 39.27 2.62
1839 6144 0.308993 GCAGCGTGACAAAGCTTTCT 59.691 50.000 9.23 0.00 39.27 2.52
1840 6145 1.923316 GCAGCGTGACAAAGCTTTCTG 60.923 52.381 9.23 13.17 39.27 3.02
1841 6146 1.599071 CAGCGTGACAAAGCTTTCTGA 59.401 47.619 9.23 0.00 39.27 3.27
1842 6147 1.869767 AGCGTGACAAAGCTTTCTGAG 59.130 47.619 9.23 0.21 37.97 3.35
1843 6148 1.599542 GCGTGACAAAGCTTTCTGAGT 59.400 47.619 9.23 3.96 0.00 3.41
1844 6149 2.800544 GCGTGACAAAGCTTTCTGAGTA 59.199 45.455 9.23 0.00 0.00 2.59
1845 6150 3.120854 GCGTGACAAAGCTTTCTGAGTAG 60.121 47.826 9.23 0.00 0.00 2.57
1846 6151 4.299155 CGTGACAAAGCTTTCTGAGTAGA 58.701 43.478 9.23 0.00 0.00 2.59
1847 6152 4.745125 CGTGACAAAGCTTTCTGAGTAGAA 59.255 41.667 9.23 0.00 41.06 2.10
1848 6153 5.406780 CGTGACAAAGCTTTCTGAGTAGAAT 59.593 40.000 9.23 0.00 42.25 2.40
1849 6154 6.400515 CGTGACAAAGCTTTCTGAGTAGAATC 60.401 42.308 9.23 0.00 42.25 2.52
1850 6155 6.648725 GTGACAAAGCTTTCTGAGTAGAATCT 59.351 38.462 9.23 0.00 42.25 2.40
1851 6156 7.815068 GTGACAAAGCTTTCTGAGTAGAATCTA 59.185 37.037 9.23 0.00 42.25 1.98
1852 6157 8.031864 TGACAAAGCTTTCTGAGTAGAATCTAG 58.968 37.037 9.23 0.00 42.25 2.43
1853 6158 7.327214 ACAAAGCTTTCTGAGTAGAATCTAGG 58.673 38.462 9.23 0.00 42.25 3.02
1854 6159 7.179338 ACAAAGCTTTCTGAGTAGAATCTAGGA 59.821 37.037 9.23 0.00 42.25 2.94
1855 6160 7.912778 AAGCTTTCTGAGTAGAATCTAGGAT 57.087 36.000 0.00 0.00 42.25 3.24
1856 6161 9.427821 AAAGCTTTCTGAGTAGAATCTAGGATA 57.572 33.333 5.69 0.00 42.25 2.59
1857 6162 9.427821 AAGCTTTCTGAGTAGAATCTAGGATAA 57.572 33.333 0.00 0.00 42.25 1.75
1858 6163 9.427821 AGCTTTCTGAGTAGAATCTAGGATAAA 57.572 33.333 0.00 0.00 42.25 1.40
1862 6167 9.575868 TTCTGAGTAGAATCTAGGATAAATCGT 57.424 33.333 0.00 0.00 37.99 3.73
1865 6170 9.788889 TGAGTAGAATCTAGGATAAATCGTACA 57.211 33.333 0.00 0.00 0.00 2.90
1945 6250 9.800433 TCATATTTTTAGTATTTACGTCGGACA 57.200 29.630 9.10 0.00 0.00 4.02
1991 6296 7.982354 TCCTAGATTCTAGTTAGAAAGCTTTGC 59.018 37.037 18.30 8.41 44.63 3.68
1992 6297 6.993786 AGATTCTAGTTAGAAAGCTTTGCC 57.006 37.500 18.30 2.73 44.63 4.52
1993 6298 6.476378 AGATTCTAGTTAGAAAGCTTTGCCA 58.524 36.000 18.30 0.00 44.63 4.92
1994 6299 7.115414 AGATTCTAGTTAGAAAGCTTTGCCAT 58.885 34.615 18.30 2.27 44.63 4.40
1995 6300 6.743575 TTCTAGTTAGAAAGCTTTGCCATC 57.256 37.500 18.30 1.03 39.22 3.51
1996 6301 5.186198 TCTAGTTAGAAAGCTTTGCCATCC 58.814 41.667 18.30 0.25 0.00 3.51
1997 6302 4.039603 AGTTAGAAAGCTTTGCCATCCT 57.960 40.909 18.30 8.71 0.00 3.24
1998 6303 3.760684 AGTTAGAAAGCTTTGCCATCCTG 59.239 43.478 18.30 0.00 0.00 3.86
1999 6304 0.893447 AGAAAGCTTTGCCATCCTGC 59.107 50.000 18.30 0.00 0.00 4.85
2000 6305 0.604578 GAAAGCTTTGCCATCCTGCA 59.395 50.000 18.30 0.00 40.07 4.41
2001 6306 1.206371 GAAAGCTTTGCCATCCTGCAT 59.794 47.619 18.30 0.00 41.70 3.96
2002 6307 2.148446 AAGCTTTGCCATCCTGCATA 57.852 45.000 0.00 0.00 41.70 3.14
2003 6308 1.688772 AGCTTTGCCATCCTGCATAG 58.311 50.000 0.00 0.00 41.70 2.23
2004 6309 0.672342 GCTTTGCCATCCTGCATAGG 59.328 55.000 5.80 0.00 46.06 2.57
2005 6310 2.025863 GCTTTGCCATCCTGCATAGGT 61.026 52.381 5.80 0.00 44.88 3.08
2006 6311 2.381911 CTTTGCCATCCTGCATAGGTT 58.618 47.619 0.00 0.00 44.88 3.50
2007 6312 2.530460 TTGCCATCCTGCATAGGTTT 57.470 45.000 0.00 0.00 44.88 3.27
2008 6313 2.057137 TGCCATCCTGCATAGGTTTC 57.943 50.000 0.00 0.00 44.88 2.78
2009 6314 1.284491 TGCCATCCTGCATAGGTTTCA 59.716 47.619 0.00 0.00 44.88 2.69
2010 6315 2.291475 TGCCATCCTGCATAGGTTTCAA 60.291 45.455 0.00 0.00 44.88 2.69
2011 6316 2.099756 GCCATCCTGCATAGGTTTCAAC 59.900 50.000 0.00 0.00 44.88 3.18
2012 6317 3.624777 CCATCCTGCATAGGTTTCAACT 58.375 45.455 0.00 0.00 44.88 3.16
2013 6318 4.019174 CCATCCTGCATAGGTTTCAACTT 58.981 43.478 0.00 0.00 44.88 2.66
2014 6319 4.096984 CCATCCTGCATAGGTTTCAACTTC 59.903 45.833 0.00 0.00 44.88 3.01
2015 6320 4.365514 TCCTGCATAGGTTTCAACTTCA 57.634 40.909 0.00 0.00 44.88 3.02
2016 6321 4.724399 TCCTGCATAGGTTTCAACTTCAA 58.276 39.130 0.00 0.00 44.88 2.69
2017 6322 4.761739 TCCTGCATAGGTTTCAACTTCAAG 59.238 41.667 0.00 0.00 44.88 3.02
2018 6323 4.761739 CCTGCATAGGTTTCAACTTCAAGA 59.238 41.667 0.00 0.00 39.39 3.02
2019 6324 5.416952 CCTGCATAGGTTTCAACTTCAAGAT 59.583 40.000 0.00 0.00 39.39 2.40
2020 6325 6.599244 CCTGCATAGGTTTCAACTTCAAGATA 59.401 38.462 0.00 0.00 39.39 1.98
2021 6326 7.284034 CCTGCATAGGTTTCAACTTCAAGATAT 59.716 37.037 0.00 0.00 39.39 1.63
2022 6327 7.988737 TGCATAGGTTTCAACTTCAAGATATG 58.011 34.615 0.00 0.00 0.00 1.78
2023 6328 7.611467 TGCATAGGTTTCAACTTCAAGATATGT 59.389 33.333 0.00 0.00 0.00 2.29
2024 6329 8.462016 GCATAGGTTTCAACTTCAAGATATGTT 58.538 33.333 0.00 0.00 0.00 2.71
2025 6330 9.994432 CATAGGTTTCAACTTCAAGATATGTTC 57.006 33.333 0.00 0.00 0.00 3.18
2026 6331 9.965902 ATAGGTTTCAACTTCAAGATATGTTCT 57.034 29.630 0.00 0.00 35.70 3.01
2028 6333 9.965902 AGGTTTCAACTTCAAGATATGTTCTAT 57.034 29.630 0.00 0.00 33.05 1.98
2029 6334 9.994432 GGTTTCAACTTCAAGATATGTTCTATG 57.006 33.333 0.00 0.00 33.05 2.23
2032 6337 8.722480 TCAACTTCAAGATATGTTCTATGTGG 57.278 34.615 0.00 0.00 33.05 4.17
2033 6338 7.770433 TCAACTTCAAGATATGTTCTATGTGGG 59.230 37.037 0.00 0.00 33.05 4.61
2034 6339 7.437713 ACTTCAAGATATGTTCTATGTGGGA 57.562 36.000 0.00 0.00 33.05 4.37
2035 6340 7.504403 ACTTCAAGATATGTTCTATGTGGGAG 58.496 38.462 0.00 0.00 33.05 4.30
2036 6341 7.345653 ACTTCAAGATATGTTCTATGTGGGAGA 59.654 37.037 0.00 0.00 33.05 3.71
2037 6342 7.675161 TCAAGATATGTTCTATGTGGGAGAA 57.325 36.000 0.00 0.00 33.05 2.87
2038 6343 7.730084 TCAAGATATGTTCTATGTGGGAGAAG 58.270 38.462 0.00 0.00 33.64 2.85
2039 6344 6.107901 AGATATGTTCTATGTGGGAGAAGC 57.892 41.667 0.00 0.00 33.64 3.86
2040 6345 5.604231 AGATATGTTCTATGTGGGAGAAGCA 59.396 40.000 0.00 0.00 33.64 3.91
2041 6346 4.574674 ATGTTCTATGTGGGAGAAGCAA 57.425 40.909 0.00 0.00 33.64 3.91
2042 6347 4.365514 TGTTCTATGTGGGAGAAGCAAA 57.634 40.909 0.00 0.00 33.64 3.68
2043 6348 4.724399 TGTTCTATGTGGGAGAAGCAAAA 58.276 39.130 0.00 0.00 33.64 2.44
2044 6349 5.136828 TGTTCTATGTGGGAGAAGCAAAAA 58.863 37.500 0.00 0.00 33.64 1.94
2079 6384 7.213252 TCGTATAGAAATTTAGTTGTGTCGC 57.787 36.000 0.00 0.00 0.00 5.19
2080 6385 6.807720 TCGTATAGAAATTTAGTTGTGTCGCA 59.192 34.615 0.00 0.00 0.00 5.10
2081 6386 6.892951 CGTATAGAAATTTAGTTGTGTCGCAC 59.107 38.462 0.00 3.44 34.56 5.34
2082 6387 4.128554 AGAAATTTAGTTGTGTCGCACG 57.871 40.909 0.00 0.00 37.14 5.34
2083 6388 2.961522 AATTTAGTTGTGTCGCACGG 57.038 45.000 5.69 0.00 37.14 4.94
2084 6389 2.157834 ATTTAGTTGTGTCGCACGGA 57.842 45.000 5.69 0.00 37.14 4.69
2085 6390 2.157834 TTTAGTTGTGTCGCACGGAT 57.842 45.000 5.69 0.00 37.14 4.18
2086 6391 1.705256 TTAGTTGTGTCGCACGGATC 58.295 50.000 5.69 0.00 37.14 3.36
2087 6392 0.885879 TAGTTGTGTCGCACGGATCT 59.114 50.000 5.69 4.40 37.14 2.75
2088 6393 0.033504 AGTTGTGTCGCACGGATCTT 59.966 50.000 5.69 0.00 37.14 2.40
2089 6394 1.271379 AGTTGTGTCGCACGGATCTTA 59.729 47.619 5.69 0.00 37.14 2.10
2090 6395 2.063266 GTTGTGTCGCACGGATCTTAA 58.937 47.619 5.69 0.00 37.14 1.85
2091 6396 2.442212 TGTGTCGCACGGATCTTAAA 57.558 45.000 5.69 0.00 37.14 1.52
2092 6397 2.333926 TGTGTCGCACGGATCTTAAAG 58.666 47.619 5.69 0.00 37.14 1.85
2093 6398 1.060698 GTGTCGCACGGATCTTAAAGC 59.939 52.381 0.00 0.00 0.00 3.51
2094 6399 0.297820 GTCGCACGGATCTTAAAGCG 59.702 55.000 0.00 0.00 45.79 4.68
2099 6404 4.992381 GCACGGATCTTAAAGCGATATT 57.008 40.909 0.00 0.00 0.00 1.28
2100 6405 4.702392 GCACGGATCTTAAAGCGATATTG 58.298 43.478 0.00 0.00 0.00 1.90
2101 6406 4.377431 GCACGGATCTTAAAGCGATATTGG 60.377 45.833 0.00 0.00 0.00 3.16
2102 6407 4.988540 CACGGATCTTAAAGCGATATTGGA 59.011 41.667 0.00 0.00 0.00 3.53
2103 6408 5.119279 CACGGATCTTAAAGCGATATTGGAG 59.881 44.000 0.00 0.00 0.00 3.86
2104 6409 5.010719 ACGGATCTTAAAGCGATATTGGAGA 59.989 40.000 0.00 0.00 0.00 3.71
2105 6410 5.574830 CGGATCTTAAAGCGATATTGGAGAG 59.425 44.000 0.00 0.00 0.00 3.20
2106 6411 6.459923 GGATCTTAAAGCGATATTGGAGAGT 58.540 40.000 0.00 0.00 0.00 3.24
2107 6412 6.931840 GGATCTTAAAGCGATATTGGAGAGTT 59.068 38.462 0.00 0.00 0.00 3.01
2108 6413 8.088981 GGATCTTAAAGCGATATTGGAGAGTTA 58.911 37.037 0.00 0.00 0.00 2.24
2109 6414 9.134734 GATCTTAAAGCGATATTGGAGAGTTAG 57.865 37.037 0.00 0.00 0.00 2.34
2110 6415 7.434492 TCTTAAAGCGATATTGGAGAGTTAGG 58.566 38.462 0.00 0.00 0.00 2.69
2111 6416 5.871396 AAAGCGATATTGGAGAGTTAGGA 57.129 39.130 0.00 0.00 0.00 2.94
2112 6417 6.426646 AAAGCGATATTGGAGAGTTAGGAT 57.573 37.500 0.00 0.00 0.00 3.24
2113 6418 7.540474 AAAGCGATATTGGAGAGTTAGGATA 57.460 36.000 0.00 0.00 0.00 2.59
2114 6419 6.767524 AGCGATATTGGAGAGTTAGGATAG 57.232 41.667 0.00 0.00 0.00 2.08
2115 6420 5.126384 AGCGATATTGGAGAGTTAGGATAGC 59.874 44.000 0.00 0.00 0.00 2.97
2116 6421 5.105716 GCGATATTGGAGAGTTAGGATAGCA 60.106 44.000 0.00 0.00 0.00 3.49
2117 6422 6.559810 CGATATTGGAGAGTTAGGATAGCAG 58.440 44.000 0.00 0.00 0.00 4.24
2118 6423 6.405286 CGATATTGGAGAGTTAGGATAGCAGG 60.405 46.154 0.00 0.00 0.00 4.85
2119 6424 2.964209 TGGAGAGTTAGGATAGCAGGG 58.036 52.381 0.00 0.00 0.00 4.45
2120 6425 1.621317 GGAGAGTTAGGATAGCAGGGC 59.379 57.143 0.00 0.00 0.00 5.19
2121 6426 1.621317 GAGAGTTAGGATAGCAGGGCC 59.379 57.143 0.00 0.00 0.00 5.80
2122 6427 1.221781 AGAGTTAGGATAGCAGGGCCT 59.778 52.381 0.00 0.00 35.82 5.19
2123 6428 1.346068 GAGTTAGGATAGCAGGGCCTG 59.654 57.143 29.44 29.44 33.28 4.85
2124 6429 0.398318 GTTAGGATAGCAGGGCCTGG 59.602 60.000 33.43 16.27 33.28 4.45
2125 6430 0.768221 TTAGGATAGCAGGGCCTGGG 60.768 60.000 33.43 11.33 33.28 4.45
2126 6431 1.973346 TAGGATAGCAGGGCCTGGGT 61.973 60.000 33.43 21.39 33.28 4.51
2127 6432 2.512896 GATAGCAGGGCCTGGGTG 59.487 66.667 33.43 11.08 31.21 4.61
2128 6433 3.781605 GATAGCAGGGCCTGGGTGC 62.782 68.421 33.43 20.80 37.48 5.01
2132 6437 4.371417 CAGGGCCTGGGTGCATGT 62.371 66.667 26.34 0.00 0.00 3.21
2133 6438 4.371417 AGGGCCTGGGTGCATGTG 62.371 66.667 4.50 0.00 0.00 3.21
2136 6441 3.446570 GCCTGGGTGCATGTGCTC 61.447 66.667 6.55 2.50 42.66 4.26
2137 6442 2.353958 CCTGGGTGCATGTGCTCT 59.646 61.111 6.55 0.00 42.66 4.09
2138 6443 1.603842 CCTGGGTGCATGTGCTCTA 59.396 57.895 6.55 0.00 42.66 2.43
2139 6444 0.035152 CCTGGGTGCATGTGCTCTAA 60.035 55.000 6.55 0.00 42.66 2.10
2140 6445 1.614051 CCTGGGTGCATGTGCTCTAAA 60.614 52.381 6.55 0.00 42.66 1.85
2141 6446 2.161855 CTGGGTGCATGTGCTCTAAAA 58.838 47.619 6.55 0.00 42.66 1.52
2142 6447 2.557924 CTGGGTGCATGTGCTCTAAAAA 59.442 45.455 6.55 0.00 42.66 1.94
2143 6448 3.164268 TGGGTGCATGTGCTCTAAAAAT 58.836 40.909 6.55 0.00 42.66 1.82
2144 6449 3.193267 TGGGTGCATGTGCTCTAAAAATC 59.807 43.478 6.55 0.00 42.66 2.17
2145 6450 3.429410 GGGTGCATGTGCTCTAAAAATCC 60.429 47.826 6.55 0.00 42.66 3.01
2146 6451 3.193267 GGTGCATGTGCTCTAAAAATCCA 59.807 43.478 6.55 0.00 42.66 3.41
2147 6452 4.168760 GTGCATGTGCTCTAAAAATCCAC 58.831 43.478 6.55 0.00 42.66 4.02
2148 6453 3.119884 TGCATGTGCTCTAAAAATCCACG 60.120 43.478 6.55 0.00 42.66 4.94
2149 6454 3.119849 GCATGTGCTCTAAAAATCCACGT 60.120 43.478 0.00 0.00 38.21 4.49
2150 6455 4.651994 CATGTGCTCTAAAAATCCACGTC 58.348 43.478 0.00 0.00 0.00 4.34
2151 6456 3.071479 TGTGCTCTAAAAATCCACGTCC 58.929 45.455 0.00 0.00 0.00 4.79
2152 6457 2.418976 GTGCTCTAAAAATCCACGTCCC 59.581 50.000 0.00 0.00 0.00 4.46
2153 6458 1.664151 GCTCTAAAAATCCACGTCCCG 59.336 52.381 0.00 0.00 0.00 5.14
2154 6459 1.664151 CTCTAAAAATCCACGTCCCGC 59.336 52.381 0.00 0.00 0.00 6.13
2155 6460 1.002201 TCTAAAAATCCACGTCCCGCA 59.998 47.619 0.00 0.00 0.00 5.69
2156 6461 1.129811 CTAAAAATCCACGTCCCGCAC 59.870 52.381 0.00 0.00 0.00 5.34
2157 6462 1.520600 AAAAATCCACGTCCCGCACC 61.521 55.000 0.00 0.00 0.00 5.01
2158 6463 2.684192 AAAATCCACGTCCCGCACCA 62.684 55.000 0.00 0.00 0.00 4.17
2301 6648 2.203238 CCGACCCAAACAACCCGT 60.203 61.111 0.00 0.00 0.00 5.28
2349 6696 5.320277 CTCTCCTGAATCTGGAAGGTTTTT 58.680 41.667 10.11 0.00 37.45 1.94
2662 7009 1.882352 GCTGGAGTGGTTGTTTCCGAT 60.882 52.381 0.00 0.00 33.60 4.18
2787 7134 4.414337 ACCAGAGAAGGATATTCTGTGC 57.586 45.455 8.75 0.00 38.17 4.57
2813 7160 2.185004 TTGCCTTGTTCTCCTACTGC 57.815 50.000 0.00 0.00 0.00 4.40
2881 7228 0.742281 CATCACGCTGAAGGTCCTGG 60.742 60.000 0.00 0.00 0.00 4.45
2927 7280 7.201679 GGATTCAATGACAAGTCAATCCTGTAG 60.202 40.741 18.03 0.00 43.58 2.74
2941 7294 8.665685 GTCAATCCTGTAGTTTGATCGTTTATT 58.334 33.333 0.00 0.00 32.48 1.40
2942 7295 8.879759 TCAATCCTGTAGTTTGATCGTTTATTC 58.120 33.333 0.00 0.00 0.00 1.75
2943 7296 8.664798 CAATCCTGTAGTTTGATCGTTTATTCA 58.335 33.333 0.00 0.00 0.00 2.57
2944 7297 8.964476 ATCCTGTAGTTTGATCGTTTATTCAT 57.036 30.769 0.00 0.00 0.00 2.57
2995 7348 4.411927 ACTTACCATTTACATTGTGGGCA 58.588 39.130 0.00 0.00 37.33 5.36
3014 7368 4.438744 GGGCAAATTACTTCATCTGTTCCG 60.439 45.833 0.00 0.00 0.00 4.30
3085 7439 7.119262 CGTTTATCATAGTTGGGTTGTCTTCTT 59.881 37.037 0.00 0.00 0.00 2.52
3144 7500 3.973206 TCTGTTCCTTGGATTCGCTAA 57.027 42.857 0.00 0.00 0.00 3.09
3153 7509 4.509600 CCTTGGATTCGCTAATGTCTCTTC 59.490 45.833 0.00 0.00 0.00 2.87
3177 7533 1.115326 GTATTGGGGCAAGGCATCCC 61.115 60.000 0.00 0.68 41.87 3.85
3193 7549 2.726351 CCCGACCTTGGAGCCTCTC 61.726 68.421 0.00 0.00 0.00 3.20
3256 7614 5.477637 GGTTGTAGCCTGTTTACCCATTTTA 59.522 40.000 0.00 0.00 0.00 1.52
3528 7934 2.955660 TGAAACAGGCAAACAAGGGTAG 59.044 45.455 0.00 0.00 0.00 3.18
3719 8135 3.364460 TGCCCAGCAAATACACAGTAT 57.636 42.857 0.00 0.00 34.76 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 6.381498 TGATTTAGTAATCCAAGTCCCACA 57.619 37.500 0.00 0.00 39.56 4.17
93 112 4.341487 TCTTTCATTCTCCACTCGTCCTA 58.659 43.478 0.00 0.00 0.00 2.94
141 160 2.170166 GCATGGATGTCCTTGAAACCA 58.830 47.619 16.56 0.00 42.04 3.67
154 173 0.682209 GCCACCAAGTCTGCATGGAT 60.682 55.000 11.04 0.00 39.12 3.41
212 232 1.618343 GCTACAAAGGCACCAACCATT 59.382 47.619 0.00 0.00 0.00 3.16
296 316 2.872388 CGTCATCCCCGCCTATGCT 61.872 63.158 0.00 0.00 34.43 3.79
374 394 2.856039 TTTGGTTTGGTGGTCGGGCA 62.856 55.000 0.00 0.00 0.00 5.36
422 442 0.872388 GTAGGGTTTTCACTGGCGTG 59.128 55.000 3.58 3.58 42.59 5.34
462 503 2.286365 TGTTTTCTCCCATGACACCC 57.714 50.000 0.00 0.00 0.00 4.61
481 523 1.490910 GTGCTCCCAAACTAGGCCTAT 59.509 52.381 14.30 0.00 0.00 2.57
506 548 8.410912 AGTTTTGGATTACTGTGGTTTTAGAAC 58.589 33.333 0.00 0.00 34.96 3.01
629 674 2.166664 CGCCTAGCTGGTCTTAGAAAGT 59.833 50.000 0.00 0.00 38.35 2.66
700 745 8.406297 AGTATCTTCAAAAGTGAGGTTTTTCAC 58.594 33.333 0.00 0.00 46.14 3.18
701 746 8.519799 AGTATCTTCAAAAGTGAGGTTTTTCA 57.480 30.769 0.00 0.00 34.49 2.69
702 747 9.880064 GTAGTATCTTCAAAAGTGAGGTTTTTC 57.120 33.333 0.00 0.00 34.49 2.29
807 941 9.581289 TTTTGAAGTTTTAGGAGAATACCATGA 57.419 29.630 0.00 0.00 0.00 3.07
899 1124 2.163010 CGCTCGGTAAACAGGAGAAGTA 59.837 50.000 5.03 0.00 0.00 2.24
915 1140 0.460987 AGAAGGAAATGAGCCGCTCG 60.461 55.000 15.58 0.00 32.35 5.03
1044 4690 1.425066 AGCATGTTTTGAGGGAGGTCA 59.575 47.619 0.00 0.00 0.00 4.02
1054 4700 4.808077 AGATATCGAGCAGCATGTTTTG 57.192 40.909 0.00 0.00 39.31 2.44
1060 4706 2.233431 GGAGGAAGATATCGAGCAGCAT 59.767 50.000 0.00 0.00 0.00 3.79
1514 5819 1.359459 GCCGGCGTAAAGGAGTTGAG 61.359 60.000 12.58 0.00 0.00 3.02
1587 5892 0.251341 GCAACCTGAACCCTCCATGT 60.251 55.000 0.00 0.00 0.00 3.21
1595 5900 2.038837 GTAGCCCGCAACCTGAACC 61.039 63.158 0.00 0.00 0.00 3.62
1612 5917 3.307059 CCCAAGAATGAGAAGAAGACCGT 60.307 47.826 0.00 0.00 0.00 4.83
1684 5989 9.722056 GCATATGCTCTAAAATATATTTTCGGG 57.278 33.333 23.40 18.87 38.26 5.14
1689 5994 9.532494 TGGGTGCATATGCTCTAAAATATATTT 57.468 29.630 27.13 4.81 42.66 1.40
1690 5995 9.182214 CTGGGTGCATATGCTCTAAAATATATT 57.818 33.333 27.13 0.00 42.66 1.28
1691 5996 7.776969 CCTGGGTGCATATGCTCTAAAATATAT 59.223 37.037 27.13 0.00 42.66 0.86
1692 5997 7.112122 CCTGGGTGCATATGCTCTAAAATATA 58.888 38.462 27.13 1.01 42.66 0.86
1693 5998 5.948162 CCTGGGTGCATATGCTCTAAAATAT 59.052 40.000 27.13 0.00 42.66 1.28
1694 5999 5.316167 CCTGGGTGCATATGCTCTAAAATA 58.684 41.667 27.13 2.54 42.66 1.40
1695 6000 4.147321 CCTGGGTGCATATGCTCTAAAAT 58.853 43.478 27.13 0.00 42.66 1.82
1696 6001 3.554934 CCTGGGTGCATATGCTCTAAAA 58.445 45.455 27.13 4.09 42.66 1.52
1697 6002 2.749466 GCCTGGGTGCATATGCTCTAAA 60.749 50.000 27.13 12.65 42.66 1.85
1698 6003 1.202806 GCCTGGGTGCATATGCTCTAA 60.203 52.381 27.13 14.80 42.66 2.10
1699 6004 0.397941 GCCTGGGTGCATATGCTCTA 59.602 55.000 27.13 16.10 42.66 2.43
1700 6005 1.150081 GCCTGGGTGCATATGCTCT 59.850 57.895 27.13 0.00 42.66 4.09
1701 6006 1.900498 GGCCTGGGTGCATATGCTC 60.900 63.158 27.13 23.05 42.66 4.26
1702 6007 2.196776 GGCCTGGGTGCATATGCT 59.803 61.111 27.13 0.00 42.66 3.79
1703 6008 2.914097 GGGCCTGGGTGCATATGC 60.914 66.667 21.09 21.09 42.50 3.14
1704 6009 1.228367 GAGGGCCTGGGTGCATATG 60.228 63.158 12.95 0.00 0.00 1.78
1705 6010 1.386485 AGAGGGCCTGGGTGCATAT 60.386 57.895 12.95 0.00 0.00 1.78
1706 6011 2.042762 AGAGGGCCTGGGTGCATA 59.957 61.111 12.95 0.00 0.00 3.14
1707 6012 2.551856 TAGAGAGGGCCTGGGTGCAT 62.552 60.000 12.95 0.00 0.00 3.96
1708 6013 2.551856 ATAGAGAGGGCCTGGGTGCA 62.552 60.000 12.95 0.00 0.00 4.57
1709 6014 1.763546 GATAGAGAGGGCCTGGGTGC 61.764 65.000 12.95 0.00 0.00 5.01
1710 6015 0.105246 AGATAGAGAGGGCCTGGGTG 60.105 60.000 12.95 0.00 0.00 4.61
1711 6016 1.431243 CTAGATAGAGAGGGCCTGGGT 59.569 57.143 12.95 0.00 0.00 4.51
1712 6017 1.894978 GCTAGATAGAGAGGGCCTGGG 60.895 61.905 12.95 0.00 0.00 4.45
1713 6018 1.555967 GCTAGATAGAGAGGGCCTGG 58.444 60.000 12.95 0.00 0.00 4.45
1714 6019 1.203112 TGGCTAGATAGAGAGGGCCTG 60.203 57.143 12.95 0.00 40.15 4.85
1715 6020 1.162505 TGGCTAGATAGAGAGGGCCT 58.837 55.000 5.25 5.25 40.15 5.19
1716 6021 2.107366 GATGGCTAGATAGAGAGGGCC 58.893 57.143 0.00 0.00 39.93 5.80
1717 6022 2.107366 GGATGGCTAGATAGAGAGGGC 58.893 57.143 0.00 0.00 0.00 5.19
1718 6023 3.464720 TGGATGGCTAGATAGAGAGGG 57.535 52.381 0.00 0.00 0.00 4.30
1719 6024 6.371595 AAAATGGATGGCTAGATAGAGAGG 57.628 41.667 0.00 0.00 0.00 3.69
1740 6045 6.893958 TTTGCACGAATCTTAAAGCAAAAA 57.106 29.167 7.79 0.00 45.47 1.94
1783 6088 9.607333 ACTTCAAGATATATTCTATGTGGGAGA 57.393 33.333 0.00 0.00 33.05 3.71
1796 6101 9.851686 TGCATAGGTTTGAACTTCAAGATATAT 57.148 29.630 4.43 0.00 37.70 0.86
1797 6102 9.330063 CTGCATAGGTTTGAACTTCAAGATATA 57.670 33.333 4.43 0.00 37.70 0.86
1798 6103 7.201767 GCTGCATAGGTTTGAACTTCAAGATAT 60.202 37.037 4.43 2.95 37.70 1.63
1799 6104 6.094048 GCTGCATAGGTTTGAACTTCAAGATA 59.906 38.462 4.43 0.97 37.70 1.98
1800 6105 5.105997 GCTGCATAGGTTTGAACTTCAAGAT 60.106 40.000 4.43 0.00 37.70 2.40
1801 6106 4.216257 GCTGCATAGGTTTGAACTTCAAGA 59.784 41.667 4.43 0.00 37.70 3.02
1802 6107 4.479619 GCTGCATAGGTTTGAACTTCAAG 58.520 43.478 4.43 0.00 37.70 3.02
1803 6108 3.058293 CGCTGCATAGGTTTGAACTTCAA 60.058 43.478 0.00 0.00 34.03 2.69
1804 6109 2.483877 CGCTGCATAGGTTTGAACTTCA 59.516 45.455 0.00 0.00 0.00 3.02
1805 6110 2.484264 ACGCTGCATAGGTTTGAACTTC 59.516 45.455 0.00 0.00 0.00 3.01
1806 6111 2.226437 CACGCTGCATAGGTTTGAACTT 59.774 45.455 0.00 0.00 0.00 2.66
1807 6112 1.806542 CACGCTGCATAGGTTTGAACT 59.193 47.619 0.00 0.00 0.00 3.01
1808 6113 1.804151 TCACGCTGCATAGGTTTGAAC 59.196 47.619 0.00 0.00 0.00 3.18
1809 6114 1.804151 GTCACGCTGCATAGGTTTGAA 59.196 47.619 0.00 0.00 0.00 2.69
1810 6115 1.270571 TGTCACGCTGCATAGGTTTGA 60.271 47.619 0.00 0.00 0.00 2.69
1811 6116 1.155889 TGTCACGCTGCATAGGTTTG 58.844 50.000 0.00 0.00 0.00 2.93
1812 6117 1.890876 TTGTCACGCTGCATAGGTTT 58.109 45.000 0.00 0.00 0.00 3.27
1813 6118 1.806542 CTTTGTCACGCTGCATAGGTT 59.193 47.619 0.00 0.00 0.00 3.50
1814 6119 1.442769 CTTTGTCACGCTGCATAGGT 58.557 50.000 0.00 0.00 0.00 3.08
1815 6120 0.097674 GCTTTGTCACGCTGCATAGG 59.902 55.000 0.00 0.00 0.00 2.57
1816 6121 1.081892 AGCTTTGTCACGCTGCATAG 58.918 50.000 0.00 0.00 34.69 2.23
1817 6122 1.522668 AAGCTTTGTCACGCTGCATA 58.477 45.000 0.00 0.00 36.45 3.14
1818 6123 0.670162 AAAGCTTTGTCACGCTGCAT 59.330 45.000 11.80 0.00 36.45 3.96
1819 6124 0.029300 GAAAGCTTTGTCACGCTGCA 59.971 50.000 18.30 0.00 36.45 4.41
1820 6125 0.308993 AGAAAGCTTTGTCACGCTGC 59.691 50.000 18.30 0.00 36.45 5.25
1821 6126 1.599071 TCAGAAAGCTTTGTCACGCTG 59.401 47.619 18.30 15.74 36.45 5.18
1822 6127 1.869767 CTCAGAAAGCTTTGTCACGCT 59.130 47.619 18.30 2.97 38.30 5.07
1823 6128 1.599542 ACTCAGAAAGCTTTGTCACGC 59.400 47.619 18.30 0.25 0.00 5.34
1824 6129 4.299155 TCTACTCAGAAAGCTTTGTCACG 58.701 43.478 18.30 5.53 0.00 4.35
1825 6130 6.648725 AGATTCTACTCAGAAAGCTTTGTCAC 59.351 38.462 18.30 1.49 43.89 3.67
1826 6131 6.763355 AGATTCTACTCAGAAAGCTTTGTCA 58.237 36.000 18.30 0.00 43.89 3.58
1827 6132 7.491048 CCTAGATTCTACTCAGAAAGCTTTGTC 59.509 40.741 18.30 2.75 43.89 3.18
1828 6133 7.179338 TCCTAGATTCTACTCAGAAAGCTTTGT 59.821 37.037 18.30 10.29 43.89 2.83
1829 6134 7.551585 TCCTAGATTCTACTCAGAAAGCTTTG 58.448 38.462 18.30 3.78 43.89 2.77
1830 6135 7.726033 TCCTAGATTCTACTCAGAAAGCTTT 57.274 36.000 12.53 12.53 43.89 3.51
1831 6136 7.912778 ATCCTAGATTCTACTCAGAAAGCTT 57.087 36.000 0.00 0.00 43.89 3.74
1832 6137 9.427821 TTTATCCTAGATTCTACTCAGAAAGCT 57.572 33.333 0.00 0.00 43.89 3.74
1836 6141 9.575868 ACGATTTATCCTAGATTCTACTCAGAA 57.424 33.333 0.00 0.00 44.77 3.02
1839 6144 9.788889 TGTACGATTTATCCTAGATTCTACTCA 57.211 33.333 0.00 0.00 0.00 3.41
1919 6224 9.800433 TGTCCGACGTAAATACTAAAAATATGA 57.200 29.630 0.00 0.00 0.00 2.15
1965 6270 7.982354 GCAAAGCTTTCTAACTAGAATCTAGGA 59.018 37.037 20.18 6.46 41.52 2.94
1966 6271 7.225734 GGCAAAGCTTTCTAACTAGAATCTAGG 59.774 40.741 20.18 4.26 41.52 3.02
1967 6272 7.766278 TGGCAAAGCTTTCTAACTAGAATCTAG 59.234 37.037 15.25 15.25 41.52 2.43
1968 6273 7.620880 TGGCAAAGCTTTCTAACTAGAATCTA 58.379 34.615 9.23 0.00 41.52 1.98
1969 6274 6.476378 TGGCAAAGCTTTCTAACTAGAATCT 58.524 36.000 9.23 0.00 41.52 2.40
1970 6275 6.743575 TGGCAAAGCTTTCTAACTAGAATC 57.256 37.500 9.23 0.00 41.52 2.52
1971 6276 6.319911 GGATGGCAAAGCTTTCTAACTAGAAT 59.680 38.462 9.23 0.00 41.52 2.40
1972 6277 5.648092 GGATGGCAAAGCTTTCTAACTAGAA 59.352 40.000 9.23 0.00 40.33 2.10
1973 6278 5.045578 AGGATGGCAAAGCTTTCTAACTAGA 60.046 40.000 9.23 0.00 0.00 2.43
1974 6279 5.065731 CAGGATGGCAAAGCTTTCTAACTAG 59.934 44.000 9.23 0.00 0.00 2.57
1975 6280 4.943705 CAGGATGGCAAAGCTTTCTAACTA 59.056 41.667 9.23 0.00 0.00 2.24
1976 6281 3.760684 CAGGATGGCAAAGCTTTCTAACT 59.239 43.478 9.23 0.43 0.00 2.24
1977 6282 3.674410 GCAGGATGGCAAAGCTTTCTAAC 60.674 47.826 9.23 0.45 35.86 2.34
1978 6283 2.493278 GCAGGATGGCAAAGCTTTCTAA 59.507 45.455 9.23 0.00 35.86 2.10
1979 6284 2.094675 GCAGGATGGCAAAGCTTTCTA 58.905 47.619 9.23 3.05 35.86 2.10
1980 6285 0.893447 GCAGGATGGCAAAGCTTTCT 59.107 50.000 9.23 0.00 35.86 2.52
1981 6286 0.604578 TGCAGGATGGCAAAGCTTTC 59.395 50.000 9.23 4.47 41.65 2.62
1982 6287 2.749340 TGCAGGATGGCAAAGCTTT 58.251 47.368 5.69 5.69 41.65 3.51
1983 6288 4.525467 TGCAGGATGGCAAAGCTT 57.475 50.000 0.00 0.00 41.65 3.74
1989 6294 1.284491 TGAAACCTATGCAGGATGGCA 59.716 47.619 0.00 0.00 45.91 4.92
1990 6295 2.057137 TGAAACCTATGCAGGATGGC 57.943 50.000 0.00 0.00 45.91 4.40
1991 6296 3.624777 AGTTGAAACCTATGCAGGATGG 58.375 45.455 0.00 0.00 45.91 3.51
1992 6297 4.701651 TGAAGTTGAAACCTATGCAGGATG 59.298 41.667 0.00 0.00 45.91 3.51
1993 6298 4.922206 TGAAGTTGAAACCTATGCAGGAT 58.078 39.130 0.00 0.00 45.91 3.24
1994 6299 4.365514 TGAAGTTGAAACCTATGCAGGA 57.634 40.909 0.00 0.00 45.91 3.86
1996 6301 5.947228 TCTTGAAGTTGAAACCTATGCAG 57.053 39.130 0.00 0.00 0.00 4.41
1997 6302 7.611467 ACATATCTTGAAGTTGAAACCTATGCA 59.389 33.333 0.00 0.00 0.00 3.96
1998 6303 7.989826 ACATATCTTGAAGTTGAAACCTATGC 58.010 34.615 0.00 0.00 0.00 3.14
1999 6304 9.994432 GAACATATCTTGAAGTTGAAACCTATG 57.006 33.333 0.00 0.00 0.00 2.23
2000 6305 9.965902 AGAACATATCTTGAAGTTGAAACCTAT 57.034 29.630 0.00 0.00 33.39 2.57
2002 6307 9.965902 ATAGAACATATCTTGAAGTTGAAACCT 57.034 29.630 0.00 0.00 39.71 3.50
2003 6308 9.994432 CATAGAACATATCTTGAAGTTGAAACC 57.006 33.333 0.00 0.00 39.71 3.27
2006 6311 9.166173 CCACATAGAACATATCTTGAAGTTGAA 57.834 33.333 0.00 0.00 39.71 2.69
2007 6312 7.770433 CCCACATAGAACATATCTTGAAGTTGA 59.230 37.037 0.00 0.00 39.71 3.18
2008 6313 7.770433 TCCCACATAGAACATATCTTGAAGTTG 59.230 37.037 0.00 0.00 39.71 3.16
2009 6314 7.861629 TCCCACATAGAACATATCTTGAAGTT 58.138 34.615 0.00 0.00 39.71 2.66
2010 6315 7.345653 TCTCCCACATAGAACATATCTTGAAGT 59.654 37.037 0.00 0.00 39.71 3.01
2011 6316 7.730084 TCTCCCACATAGAACATATCTTGAAG 58.270 38.462 0.00 0.00 39.71 3.02
2012 6317 7.675161 TCTCCCACATAGAACATATCTTGAA 57.325 36.000 0.00 0.00 39.71 2.69
2013 6318 7.675161 TTCTCCCACATAGAACATATCTTGA 57.325 36.000 0.00 0.00 39.71 3.02
2014 6319 6.426328 GCTTCTCCCACATAGAACATATCTTG 59.574 42.308 0.00 0.00 39.71 3.02
2015 6320 6.100279 TGCTTCTCCCACATAGAACATATCTT 59.900 38.462 0.00 0.00 39.71 2.40
2016 6321 5.604231 TGCTTCTCCCACATAGAACATATCT 59.396 40.000 0.00 0.00 42.48 1.98
2017 6322 5.858381 TGCTTCTCCCACATAGAACATATC 58.142 41.667 0.00 0.00 0.00 1.63
2018 6323 5.894298 TGCTTCTCCCACATAGAACATAT 57.106 39.130 0.00 0.00 0.00 1.78
2019 6324 5.692115 TTGCTTCTCCCACATAGAACATA 57.308 39.130 0.00 0.00 0.00 2.29
2020 6325 4.574674 TTGCTTCTCCCACATAGAACAT 57.425 40.909 0.00 0.00 0.00 2.71
2021 6326 4.365514 TTTGCTTCTCCCACATAGAACA 57.634 40.909 0.00 0.00 0.00 3.18
2022 6327 5.705609 TTTTTGCTTCTCCCACATAGAAC 57.294 39.130 0.00 0.00 0.00 3.01
2053 6358 8.164153 GCGACACAACTAAATTTCTATACGAAA 58.836 33.333 0.00 0.00 45.08 3.46
2054 6359 7.328982 TGCGACACAACTAAATTTCTATACGAA 59.671 33.333 0.00 0.00 0.00 3.85
2055 6360 6.807720 TGCGACACAACTAAATTTCTATACGA 59.192 34.615 0.00 0.00 0.00 3.43
2056 6361 6.892951 GTGCGACACAACTAAATTTCTATACG 59.107 38.462 0.00 0.00 34.08 3.06
2057 6362 6.892951 CGTGCGACACAACTAAATTTCTATAC 59.107 38.462 0.00 0.00 33.40 1.47
2058 6363 6.035220 CCGTGCGACACAACTAAATTTCTATA 59.965 38.462 0.00 0.00 33.40 1.31
2059 6364 5.163893 CCGTGCGACACAACTAAATTTCTAT 60.164 40.000 0.00 0.00 33.40 1.98
2060 6365 4.150980 CCGTGCGACACAACTAAATTTCTA 59.849 41.667 0.00 0.00 33.40 2.10
2061 6366 3.059188 CCGTGCGACACAACTAAATTTCT 60.059 43.478 0.00 0.00 33.40 2.52
2062 6367 3.059461 TCCGTGCGACACAACTAAATTTC 60.059 43.478 0.00 0.00 33.40 2.17
2063 6368 2.873472 TCCGTGCGACACAACTAAATTT 59.127 40.909 9.95 0.00 33.40 1.82
2064 6369 2.485903 TCCGTGCGACACAACTAAATT 58.514 42.857 9.95 0.00 33.40 1.82
2065 6370 2.157834 TCCGTGCGACACAACTAAAT 57.842 45.000 9.95 0.00 33.40 1.40
2066 6371 2.063266 GATCCGTGCGACACAACTAAA 58.937 47.619 9.95 0.00 33.40 1.85
2067 6372 1.271379 AGATCCGTGCGACACAACTAA 59.729 47.619 9.95 0.00 33.40 2.24
2068 6373 0.885879 AGATCCGTGCGACACAACTA 59.114 50.000 9.95 0.00 33.40 2.24
2069 6374 0.033504 AAGATCCGTGCGACACAACT 59.966 50.000 9.95 1.90 33.40 3.16
2070 6375 1.705256 TAAGATCCGTGCGACACAAC 58.295 50.000 9.95 0.07 33.40 3.32
2071 6376 2.442212 TTAAGATCCGTGCGACACAA 57.558 45.000 9.95 0.00 33.40 3.33
2072 6377 2.333926 CTTTAAGATCCGTGCGACACA 58.666 47.619 9.95 0.00 33.40 3.72
2073 6378 1.060698 GCTTTAAGATCCGTGCGACAC 59.939 52.381 0.00 0.00 0.00 3.67
2074 6379 1.355971 GCTTTAAGATCCGTGCGACA 58.644 50.000 0.00 0.00 0.00 4.35
2075 6380 0.297820 CGCTTTAAGATCCGTGCGAC 59.702 55.000 9.50 0.00 45.15 5.19
2076 6381 2.660944 CGCTTTAAGATCCGTGCGA 58.339 52.632 9.50 0.00 45.15 5.10
2077 6382 1.209128 ATCGCTTTAAGATCCGTGCG 58.791 50.000 0.00 0.00 43.95 5.34
2078 6383 4.377431 CCAATATCGCTTTAAGATCCGTGC 60.377 45.833 0.00 0.00 0.00 5.34
2079 6384 4.988540 TCCAATATCGCTTTAAGATCCGTG 59.011 41.667 0.00 0.00 0.00 4.94
2080 6385 5.010719 TCTCCAATATCGCTTTAAGATCCGT 59.989 40.000 0.00 0.00 0.00 4.69
2081 6386 5.470368 TCTCCAATATCGCTTTAAGATCCG 58.530 41.667 0.00 0.00 0.00 4.18
2082 6387 6.459923 ACTCTCCAATATCGCTTTAAGATCC 58.540 40.000 0.00 0.00 0.00 3.36
2083 6388 7.954788 AACTCTCCAATATCGCTTTAAGATC 57.045 36.000 0.00 0.00 0.00 2.75
2084 6389 8.091449 CCTAACTCTCCAATATCGCTTTAAGAT 58.909 37.037 0.00 0.00 0.00 2.40
2085 6390 7.287005 TCCTAACTCTCCAATATCGCTTTAAGA 59.713 37.037 0.00 0.00 0.00 2.10
2086 6391 7.434492 TCCTAACTCTCCAATATCGCTTTAAG 58.566 38.462 0.00 0.00 0.00 1.85
2087 6392 7.356089 TCCTAACTCTCCAATATCGCTTTAA 57.644 36.000 0.00 0.00 0.00 1.52
2088 6393 6.971726 TCCTAACTCTCCAATATCGCTTTA 57.028 37.500 0.00 0.00 0.00 1.85
2089 6394 5.871396 TCCTAACTCTCCAATATCGCTTT 57.129 39.130 0.00 0.00 0.00 3.51
2090 6395 6.350612 GCTATCCTAACTCTCCAATATCGCTT 60.351 42.308 0.00 0.00 0.00 4.68
2091 6396 5.126384 GCTATCCTAACTCTCCAATATCGCT 59.874 44.000 0.00 0.00 0.00 4.93
2092 6397 5.105716 TGCTATCCTAACTCTCCAATATCGC 60.106 44.000 0.00 0.00 0.00 4.58
2093 6398 6.405286 CCTGCTATCCTAACTCTCCAATATCG 60.405 46.154 0.00 0.00 0.00 2.92
2094 6399 6.127196 CCCTGCTATCCTAACTCTCCAATATC 60.127 46.154 0.00 0.00 0.00 1.63
2095 6400 5.723887 CCCTGCTATCCTAACTCTCCAATAT 59.276 44.000 0.00 0.00 0.00 1.28
2096 6401 5.087323 CCCTGCTATCCTAACTCTCCAATA 58.913 45.833 0.00 0.00 0.00 1.90
2097 6402 3.906846 CCCTGCTATCCTAACTCTCCAAT 59.093 47.826 0.00 0.00 0.00 3.16
2098 6403 3.309296 CCCTGCTATCCTAACTCTCCAA 58.691 50.000 0.00 0.00 0.00 3.53
2099 6404 2.964209 CCCTGCTATCCTAACTCTCCA 58.036 52.381 0.00 0.00 0.00 3.86
2100 6405 1.621317 GCCCTGCTATCCTAACTCTCC 59.379 57.143 0.00 0.00 0.00 3.71
2101 6406 1.621317 GGCCCTGCTATCCTAACTCTC 59.379 57.143 0.00 0.00 0.00 3.20
2102 6407 1.221781 AGGCCCTGCTATCCTAACTCT 59.778 52.381 0.00 0.00 0.00 3.24
2103 6408 1.346068 CAGGCCCTGCTATCCTAACTC 59.654 57.143 0.00 0.00 0.00 3.01
2104 6409 1.428869 CAGGCCCTGCTATCCTAACT 58.571 55.000 0.00 0.00 0.00 2.24
2105 6410 0.398318 CCAGGCCCTGCTATCCTAAC 59.602 60.000 4.81 0.00 0.00 2.34
2106 6411 0.768221 CCCAGGCCCTGCTATCCTAA 60.768 60.000 4.81 0.00 0.00 2.69
2107 6412 1.152030 CCCAGGCCCTGCTATCCTA 60.152 63.158 4.81 0.00 0.00 2.94
2108 6413 2.449322 CCCAGGCCCTGCTATCCT 60.449 66.667 4.81 0.00 0.00 3.24
2109 6414 2.774351 ACCCAGGCCCTGCTATCC 60.774 66.667 4.81 0.00 0.00 2.59
2110 6415 2.512896 CACCCAGGCCCTGCTATC 59.487 66.667 4.81 0.00 0.00 2.08
2111 6416 3.813724 GCACCCAGGCCCTGCTAT 61.814 66.667 4.81 0.00 0.00 2.97
2115 6420 4.371417 ACATGCACCCAGGCCCTG 62.371 66.667 2.91 2.91 0.00 4.45
2116 6421 4.371417 CACATGCACCCAGGCCCT 62.371 66.667 0.00 0.00 0.00 5.19
2119 6424 2.541547 TAGAGCACATGCACCCAGGC 62.542 60.000 6.64 0.00 45.16 4.85
2120 6425 0.035152 TTAGAGCACATGCACCCAGG 60.035 55.000 6.64 0.00 45.16 4.45
2121 6426 1.825090 TTTAGAGCACATGCACCCAG 58.175 50.000 6.64 0.00 45.16 4.45
2122 6427 2.284754 TTTTAGAGCACATGCACCCA 57.715 45.000 6.64 0.00 45.16 4.51
2123 6428 3.429410 GGATTTTTAGAGCACATGCACCC 60.429 47.826 6.64 0.00 45.16 4.61
2124 6429 3.193267 TGGATTTTTAGAGCACATGCACC 59.807 43.478 6.64 0.00 45.16 5.01
2125 6430 4.168760 GTGGATTTTTAGAGCACATGCAC 58.831 43.478 6.64 0.00 45.16 4.57
2126 6431 3.119884 CGTGGATTTTTAGAGCACATGCA 60.120 43.478 6.64 0.00 45.16 3.96
2127 6432 3.119849 ACGTGGATTTTTAGAGCACATGC 60.120 43.478 0.00 0.00 42.49 4.06
2128 6433 4.437390 GGACGTGGATTTTTAGAGCACATG 60.437 45.833 0.00 0.00 0.00 3.21
2129 6434 3.689649 GGACGTGGATTTTTAGAGCACAT 59.310 43.478 0.00 0.00 0.00 3.21
2130 6435 3.071479 GGACGTGGATTTTTAGAGCACA 58.929 45.455 0.00 0.00 0.00 4.57
2131 6436 2.418976 GGGACGTGGATTTTTAGAGCAC 59.581 50.000 0.00 0.00 0.00 4.40
2132 6437 2.706890 GGGACGTGGATTTTTAGAGCA 58.293 47.619 0.00 0.00 0.00 4.26
2148 6453 2.750237 GTTGGGATGGTGCGGGAC 60.750 66.667 0.00 0.00 0.00 4.46
2149 6454 4.041762 GGTTGGGATGGTGCGGGA 62.042 66.667 0.00 0.00 0.00 5.14
2153 6458 3.991318 TGGGGGTTGGGATGGTGC 61.991 66.667 0.00 0.00 0.00 5.01
2154 6459 2.037208 GTGGGGGTTGGGATGGTG 59.963 66.667 0.00 0.00 0.00 4.17
2155 6460 3.272847 GGTGGGGGTTGGGATGGT 61.273 66.667 0.00 0.00 0.00 3.55
2156 6461 4.074408 GGGTGGGGGTTGGGATGG 62.074 72.222 0.00 0.00 0.00 3.51
2157 6462 4.440829 CGGGTGGGGGTTGGGATG 62.441 72.222 0.00 0.00 0.00 3.51
2188 6520 2.027745 AGCACAAGATCACCTTCGTCAT 60.028 45.455 0.00 0.00 31.42 3.06
2301 6648 5.183713 GTGGGATCATCTCAACAAACAATCA 59.816 40.000 0.00 0.00 0.00 2.57
2349 6696 2.124983 GCCAAGGATCGAGCTGCA 60.125 61.111 0.00 0.00 0.00 4.41
2662 7009 5.394883 GGTTGGAAGAGACCATTATACGTCA 60.395 44.000 0.00 0.00 39.82 4.35
2813 7160 4.037208 GGATGGTAGCTGGATGTTTTGATG 59.963 45.833 0.00 0.00 0.00 3.07
2927 7280 9.567848 ACAATTACCATGAATAAACGATCAAAC 57.432 29.630 0.00 0.00 0.00 2.93
2941 7294 6.545666 ACAGAAGACAACAACAATTACCATGA 59.454 34.615 0.00 0.00 0.00 3.07
2942 7295 6.738114 ACAGAAGACAACAACAATTACCATG 58.262 36.000 0.00 0.00 0.00 3.66
2943 7296 6.959639 ACAGAAGACAACAACAATTACCAT 57.040 33.333 0.00 0.00 0.00 3.55
2944 7297 6.767524 AACAGAAGACAACAACAATTACCA 57.232 33.333 0.00 0.00 0.00 3.25
2995 7348 5.995282 TGTCACGGAACAGATGAAGTAATTT 59.005 36.000 0.00 0.00 0.00 1.82
3014 7368 8.709386 AGTTATCACTGAATACTGAATGTCAC 57.291 34.615 0.00 0.00 0.00 3.67
3067 7421 5.072600 TGGTACAAGAAGACAACCCAACTAT 59.927 40.000 0.00 0.00 31.92 2.12
3070 7424 3.547746 TGGTACAAGAAGACAACCCAAC 58.452 45.455 0.00 0.00 31.92 3.77
3085 7439 5.600484 ACAATGAAATGGGAAGTTTGGTACA 59.400 36.000 0.00 0.00 0.00 2.90
3144 7500 2.700897 CCCAATACCGAGGAAGAGACAT 59.299 50.000 0.00 0.00 0.00 3.06
3153 7509 1.152963 CCTTGCCCCAATACCGAGG 60.153 63.158 0.00 0.00 0.00 4.63
3177 7533 0.610687 AAAGAGAGGCTCCAAGGTCG 59.389 55.000 11.71 0.00 0.00 4.79
3200 7556 8.861086 AGAACAGTAATCTTACAGACAGAAAGA 58.139 33.333 3.15 0.00 36.12 2.52
3201 7557 9.134734 GAGAACAGTAATCTTACAGACAGAAAG 57.865 37.037 3.15 0.00 36.12 2.62
3202 7558 8.861086 AGAGAACAGTAATCTTACAGACAGAAA 58.139 33.333 3.15 0.00 36.12 2.52
3283 7642 8.311836 AGATAGTAGGCGCTGCTAATTAATTTA 58.688 33.333 7.64 0.00 32.90 1.40
3298 7657 7.990917 ACAACATATCATAGAGATAGTAGGCG 58.009 38.462 0.00 0.00 42.26 5.52
3358 7717 8.057742 GCATTCCAAAAATAAATTACTCATGCG 58.942 33.333 0.00 0.00 0.00 4.73
3528 7934 7.384932 TCATGTGATACGTGTCATTTATCCATC 59.615 37.037 18.34 2.82 36.53 3.51
3572 7985 6.032039 TGAGCCCTAGGTTATATTCATCCAT 58.968 40.000 8.29 0.00 0.00 3.41
3650 8064 4.913335 ACCAATCAGCAATTGAGCATAG 57.087 40.909 10.34 0.00 46.54 2.23


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.