Multiple sequence alignment - TraesCS3A01G173000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G173000 chr3A 100.000 5180 0 0 1 5180 189320811 189315632 0.000000e+00 9566.0
1 TraesCS3A01G173000 chr3A 88.919 370 31 4 4820 5180 714362671 714362303 1.020000e-121 448.0
2 TraesCS3A01G173000 chr3A 93.103 87 3 1 1645 1728 599579482 599579568 1.960000e-24 124.0
3 TraesCS3A01G173000 chr3B 95.500 1800 57 11 2791 4582 237633974 237635757 0.000000e+00 2854.0
4 TraesCS3A01G173000 chr3B 90.711 1970 100 31 3 1913 237631038 237632983 0.000000e+00 2547.0
5 TraesCS3A01G173000 chr3B 95.423 874 38 2 1914 2787 237633032 237633903 0.000000e+00 1391.0
6 TraesCS3A01G173000 chr3D 93.943 1849 69 8 2791 4621 160892219 160894042 0.000000e+00 2754.0
7 TraesCS3A01G173000 chr3D 88.039 1739 109 39 186 1844 160889511 160891230 0.000000e+00 1967.0
8 TraesCS3A01G173000 chr3D 94.105 933 38 8 1872 2787 160891219 160892151 0.000000e+00 1402.0
9 TraesCS3A01G173000 chr3D 94.737 38 2 0 89 126 69502004 69501967 5.600000e-05 60.2
10 TraesCS3A01G173000 chr1A 88.472 373 32 4 4818 5180 379137118 379136747 1.710000e-119 440.0
11 TraesCS3A01G173000 chr5D 89.266 354 27 4 4832 5175 565048186 565047834 2.870000e-117 433.0
12 TraesCS3A01G173000 chr5D 86.863 373 39 5 4818 5180 336652906 336652534 4.830000e-110 409.0
13 TraesCS3A01G173000 chr7A 87.701 374 33 7 4818 5180 21002059 21001688 1.720000e-114 424.0
14 TraesCS3A01G173000 chr6A 87.399 373 37 4 4818 5180 11896068 11895696 2.230000e-113 420.0
15 TraesCS3A01G173000 chr5A 87.634 372 32 7 4818 5177 365049150 365049519 2.230000e-113 420.0
16 TraesCS3A01G173000 chr2B 87.399 373 36 4 4818 5180 224336238 224336609 8.020000e-113 418.0
17 TraesCS3A01G173000 chr2A 87.200 375 36 8 4818 5180 283539593 283539219 2.890000e-112 416.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G173000 chr3A 189315632 189320811 5179 True 9566 9566 100.000 1 5180 1 chr3A.!!$R1 5179
1 TraesCS3A01G173000 chr3B 237631038 237635757 4719 False 2264 2854 93.878 3 4582 3 chr3B.!!$F1 4579
2 TraesCS3A01G173000 chr3D 160889511 160894042 4531 False 2041 2754 92.029 186 4621 3 chr3D.!!$F1 4435

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
980 1090 0.539669 GGAGAACACAGGGGTTTGGG 60.540 60.0 0.00 0.00 0.00 4.12 F
1793 1912 0.391263 GGTACAGCAGGCAGTGGTAC 60.391 60.0 0.00 3.89 34.15 3.34 F
2615 2802 0.107312 AGCATGTTAGCTGCTCCTGG 60.107 55.0 4.91 0.00 46.79 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2334 2519 0.538118 ACAATGGCCATGATGGTTGC 59.462 50.0 21.63 0.00 40.46 4.17 R
3562 3818 0.672342 GCTGGACATGCATTGATCCC 59.328 55.0 15.61 5.98 0.00 3.85 R
4298 4556 1.203928 GAGCATTCCGATCACGACAG 58.796 55.0 0.00 0.00 42.66 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.380423 AATGTATAGGATGTGGCTAACTCTT 57.620 36.000 0.00 0.00 0.00 2.85
27 28 6.161855 TGTATAGGATGTGGCTAACTCTTG 57.838 41.667 0.00 0.00 0.00 3.02
133 135 6.817184 TGGTGTAGGAATTAGATAAGAGTGC 58.183 40.000 0.00 0.00 0.00 4.40
134 136 6.183360 TGGTGTAGGAATTAGATAAGAGTGCC 60.183 42.308 0.00 0.00 0.00 5.01
180 191 4.818005 ACCCGTCGTACTTTTTGAGAAAAT 59.182 37.500 0.00 0.00 34.45 1.82
212 223 8.362639 AGAATACAGCTTGTCACAAAATGAATT 58.637 29.630 8.32 0.00 39.72 2.17
213 224 8.524870 AATACAGCTTGTCACAAAATGAATTC 57.475 30.769 8.32 0.00 39.72 2.17
225 236 7.219917 TCACAAAATGAATTCGTGTCTTGTTTC 59.780 33.333 15.32 0.00 33.02 2.78
236 254 8.663771 TTCGTGTCTTGTTTCTTCTTAAAAAC 57.336 30.769 0.00 0.00 36.21 2.43
274 292 9.109393 TCATTACCTTGCAATGTTATTACTCTC 57.891 33.333 12.74 0.00 35.36 3.20
282 300 5.220416 GCAATGTTATTACTCTCGTGTGGTC 60.220 44.000 0.00 0.00 0.00 4.02
313 331 5.099042 TCAAGGCAGTAACTAATTCCTCC 57.901 43.478 0.00 0.00 0.00 4.30
324 342 6.986904 AACTAATTCCTCCGATTCAAAGTC 57.013 37.500 0.00 0.00 0.00 3.01
374 393 4.739716 ACAGCACTATTCGTTTGCTTTTTG 59.260 37.500 0.00 0.00 44.26 2.44
438 459 5.305902 TGTGGTCTATACTTTCACTCCAACA 59.694 40.000 0.00 0.00 0.00 3.33
457 478 7.108847 TCCAACATTTTGTTTCACCTTCAAAT 58.891 30.769 0.00 0.00 38.77 2.32
458 479 8.260818 TCCAACATTTTGTTTCACCTTCAAATA 58.739 29.630 0.00 0.00 38.77 1.40
459 480 9.054922 CCAACATTTTGTTTCACCTTCAAATAT 57.945 29.630 0.00 0.00 38.77 1.28
462 483 8.428063 ACATTTTGTTTCACCTTCAAATATCCA 58.572 29.630 0.00 0.00 32.41 3.41
463 484 9.439500 CATTTTGTTTCACCTTCAAATATCCAT 57.561 29.630 0.00 0.00 32.41 3.41
580 656 0.596082 AAAAATCCAGCGGACCAACG 59.404 50.000 0.00 0.00 32.98 4.10
768 844 2.584835 TCCCCACAAACAATCCTCTG 57.415 50.000 0.00 0.00 0.00 3.35
769 845 0.890683 CCCCACAAACAATCCTCTGC 59.109 55.000 0.00 0.00 0.00 4.26
796 872 2.607750 ACCTCCATGGCTCCACGT 60.608 61.111 6.96 0.00 40.22 4.49
797 873 1.305802 ACCTCCATGGCTCCACGTA 60.306 57.895 6.96 0.00 40.22 3.57
798 874 0.691078 ACCTCCATGGCTCCACGTAT 60.691 55.000 6.96 0.00 40.22 3.06
799 875 1.338107 CCTCCATGGCTCCACGTATA 58.662 55.000 6.96 0.00 0.00 1.47
800 876 1.902508 CCTCCATGGCTCCACGTATAT 59.097 52.381 6.96 0.00 0.00 0.86
801 877 3.096852 CCTCCATGGCTCCACGTATATA 58.903 50.000 6.96 0.00 0.00 0.86
802 878 3.131223 CCTCCATGGCTCCACGTATATAG 59.869 52.174 6.96 0.00 0.00 1.31
803 879 3.096852 TCCATGGCTCCACGTATATAGG 58.903 50.000 6.96 0.87 0.00 2.57
804 880 3.096852 CCATGGCTCCACGTATATAGGA 58.903 50.000 9.36 0.00 0.00 2.94
806 882 2.156917 TGGCTCCACGTATATAGGACG 58.843 52.381 9.36 8.09 45.75 4.79
807 883 1.135460 GGCTCCACGTATATAGGACGC 60.135 57.143 9.36 6.09 44.14 5.19
967 1076 2.141448 GGGGATCGGGGAGGAGAAC 61.141 68.421 0.00 0.00 0.00 3.01
969 1078 1.687297 GGGATCGGGGAGGAGAACAC 61.687 65.000 0.00 0.00 0.00 3.32
972 1082 0.978146 ATCGGGGAGGAGAACACAGG 60.978 60.000 0.00 0.00 0.00 4.00
980 1090 0.539669 GGAGAACACAGGGGTTTGGG 60.540 60.000 0.00 0.00 0.00 4.12
983 1093 1.152546 AACACAGGGGTTTGGGCTC 60.153 57.895 0.00 0.00 0.00 4.70
1231 1341 3.792047 GCAATCAGCAGACGCGCA 61.792 61.111 5.73 0.00 45.49 6.09
1701 1820 2.030457 GCCAGTTACATACATGCACGTC 59.970 50.000 0.00 0.00 0.00 4.34
1707 1826 1.153168 ATACATGCACGTCCCCTGC 60.153 57.895 0.00 0.00 35.03 4.85
1761 1880 8.255206 TGAGTTTCCTGTACGTGAACATTATAT 58.745 33.333 0.00 0.00 0.00 0.86
1762 1881 9.740239 GAGTTTCCTGTACGTGAACATTATATA 57.260 33.333 0.00 0.00 0.00 0.86
1793 1912 0.391263 GGTACAGCAGGCAGTGGTAC 60.391 60.000 0.00 3.89 34.15 3.34
1849 1969 3.245658 TGGCCTTTACTGTACCTCTCTCT 60.246 47.826 3.32 0.00 0.00 3.10
1988 2167 1.475280 GGTAGAAAATTTCGGTGCCCC 59.525 52.381 0.00 0.00 34.02 5.80
2065 2244 1.153881 GTCTCCGCCGGTACAGTTC 60.154 63.158 1.63 0.00 0.00 3.01
2334 2519 6.933521 CAGGACTAATGGTAAGAATGATCCAG 59.066 42.308 0.00 0.00 33.33 3.86
2367 2552 2.849942 CCATTGTGAGTGGTGAGAACA 58.150 47.619 0.00 0.00 31.96 3.18
2489 2674 6.355747 AGATGATCTGAATTCTTCAAGGTCC 58.644 40.000 7.05 0.00 39.58 4.46
2522 2707 6.264832 TGAATGGTTTATTTGCGATGATGAC 58.735 36.000 0.00 0.00 0.00 3.06
2582 2767 5.314573 ACTCCTCCCTGATATCTCATGTCTA 59.685 44.000 3.98 0.00 0.00 2.59
2587 2774 4.480541 CCTGATATCTCATGTCTACGTGC 58.519 47.826 0.00 0.00 33.05 5.34
2591 2778 0.456142 TCTCATGTCTACGTGCGTGC 60.456 55.000 7.55 0.00 33.05 5.34
2609 2796 2.481903 GCCTTTAGCATGTTAGCTGC 57.518 50.000 0.00 0.00 46.11 5.25
2615 2802 0.107312 AGCATGTTAGCTGCTCCTGG 60.107 55.000 4.91 0.00 46.79 4.45
2634 2821 2.351418 TGGCACTTATTTTGCTCGATCG 59.649 45.455 9.36 9.36 40.07 3.69
2728 2915 3.013921 TCAAATTTGAGGTATGCCGGTC 58.986 45.455 16.91 0.00 40.50 4.79
2738 2925 2.549754 GGTATGCCGGTCTTCAATCATG 59.450 50.000 1.90 0.00 0.00 3.07
2744 2931 3.181500 GCCGGTCTTCAATCATGTTAACC 60.181 47.826 1.90 0.00 0.00 2.85
2746 2933 4.700213 CCGGTCTTCAATCATGTTAACCTT 59.300 41.667 2.48 0.00 0.00 3.50
2753 2940 8.912988 TCTTCAATCATGTTAACCTTTTCTGTT 58.087 29.630 2.48 0.00 0.00 3.16
2787 2974 5.066893 AGTTATGCATCATGGACACATCAAC 59.933 40.000 0.19 0.00 34.35 3.18
2788 2975 2.792878 TGCATCATGGACACATCAACA 58.207 42.857 0.00 0.00 34.35 3.33
2789 2976 2.488937 TGCATCATGGACACATCAACAC 59.511 45.455 0.00 0.00 34.35 3.32
2809 3063 4.389992 ACACTGTAATCTCTGTGCATTTCG 59.610 41.667 0.00 0.00 39.64 3.46
2966 3220 1.680249 GCCATTCTCTTGGTGGGAGTC 60.680 57.143 0.00 0.00 39.11 3.36
3034 3288 1.734707 GCTGCATCATTGTTGCCTGTC 60.735 52.381 15.27 1.18 39.39 3.51
3091 3345 4.502087 GGTGACCACTTACTCCGTAAACTT 60.502 45.833 0.00 0.00 0.00 2.66
3154 3408 5.048224 TCGGGATATTGTTCCTCGAGTATTC 60.048 44.000 12.31 0.03 35.18 1.75
3282 3536 8.587952 ACCTCTTTATTTTGTAACACAAATGC 57.412 30.769 5.38 0.00 46.17 3.56
3346 3601 4.767928 ACTAGATAACCGAGGTCCATGATC 59.232 45.833 0.00 0.00 0.00 2.92
3400 3655 5.355350 GGTAGGTTTGATTTCTGACATGGAG 59.645 44.000 0.00 0.00 0.00 3.86
3507 3762 8.806146 AGGACTAAAACATGCATCTTGTAAAAT 58.194 29.630 0.00 0.00 0.00 1.82
3562 3818 8.407832 TCTGAATAAGCATTGGAAATACACATG 58.592 33.333 0.00 0.00 0.00 3.21
3603 3861 7.335422 CCAGCAATCACACTCTTAAGTCTTAAT 59.665 37.037 5.50 0.00 31.71 1.40
4190 4448 7.094420 CGTTAGACTGAGGTGATAGATGATGAT 60.094 40.741 0.00 0.00 0.00 2.45
4191 4449 6.593268 AGACTGAGGTGATAGATGATGATG 57.407 41.667 0.00 0.00 0.00 3.07
4192 4450 6.313324 AGACTGAGGTGATAGATGATGATGA 58.687 40.000 0.00 0.00 0.00 2.92
4193 4451 6.955267 AGACTGAGGTGATAGATGATGATGAT 59.045 38.462 0.00 0.00 0.00 2.45
4194 4452 6.937392 ACTGAGGTGATAGATGATGATGATG 58.063 40.000 0.00 0.00 0.00 3.07
4195 4453 6.724905 ACTGAGGTGATAGATGATGATGATGA 59.275 38.462 0.00 0.00 0.00 2.92
4196 4454 6.932947 TGAGGTGATAGATGATGATGATGAC 58.067 40.000 0.00 0.00 0.00 3.06
4197 4455 5.963594 AGGTGATAGATGATGATGATGACG 58.036 41.667 0.00 0.00 0.00 4.35
4198 4456 5.713861 AGGTGATAGATGATGATGATGACGA 59.286 40.000 0.00 0.00 0.00 4.20
4209 4467 4.232221 TGATGATGACGACGATGATGATG 58.768 43.478 0.00 0.00 0.00 3.07
4245 4503 1.462791 GTTTCGTTCGTTTGCACAGG 58.537 50.000 0.00 0.00 0.00 4.00
4246 4504 1.062880 GTTTCGTTCGTTTGCACAGGA 59.937 47.619 0.00 0.00 0.00 3.86
4247 4505 1.588674 TTCGTTCGTTTGCACAGGAT 58.411 45.000 0.00 0.00 0.00 3.24
4248 4506 2.442212 TCGTTCGTTTGCACAGGATA 57.558 45.000 0.00 0.00 0.00 2.59
4249 4507 2.333926 TCGTTCGTTTGCACAGGATAG 58.666 47.619 0.00 0.00 0.00 2.08
4250 4508 1.201921 CGTTCGTTTGCACAGGATAGC 60.202 52.381 0.00 0.00 0.00 2.97
4251 4509 1.804151 GTTCGTTTGCACAGGATAGCA 59.196 47.619 0.00 0.00 39.32 3.49
4252 4510 2.401583 TCGTTTGCACAGGATAGCAT 57.598 45.000 0.00 0.00 40.94 3.79
4254 4512 3.867857 TCGTTTGCACAGGATAGCATTA 58.132 40.909 0.00 0.00 40.94 1.90
4255 4513 3.621268 TCGTTTGCACAGGATAGCATTAC 59.379 43.478 0.00 0.00 40.94 1.89
4256 4514 3.373748 CGTTTGCACAGGATAGCATTACA 59.626 43.478 0.00 0.00 40.94 2.41
4279 4537 3.679389 ACATGATTCTTTTGTCCGAGCT 58.321 40.909 0.00 0.00 0.00 4.09
4354 4612 4.876125 TCTAAGATCGATCCATCAGCAAC 58.124 43.478 21.66 0.00 0.00 4.17
4391 4649 6.318144 ACAGATTAACATGAAGGCTCAGATTG 59.682 38.462 0.00 0.00 34.23 2.67
4431 4703 2.886081 AGCTGTCTCAAAGTAGCATCG 58.114 47.619 0.00 0.00 38.59 3.84
4474 4748 7.004555 TCATGTGGTTCTTGTCTATGTTACT 57.995 36.000 0.00 0.00 0.00 2.24
4482 4756 7.272948 GGTTCTTGTCTATGTTACTACTCAACG 59.727 40.741 0.00 0.00 0.00 4.10
4626 4903 1.706301 CTCATGCAGAGTCGTTGCG 59.294 57.895 0.00 0.00 44.40 4.85
4627 4904 1.006220 TCATGCAGAGTCGTTGCGT 60.006 52.632 0.00 0.00 44.40 5.24
4628 4905 0.242555 TCATGCAGAGTCGTTGCGTA 59.757 50.000 0.00 0.00 44.40 4.42
4629 4906 0.366871 CATGCAGAGTCGTTGCGTAC 59.633 55.000 0.00 0.00 44.40 3.67
4630 4907 0.243907 ATGCAGAGTCGTTGCGTACT 59.756 50.000 0.00 0.00 44.40 2.73
4631 4908 0.386858 TGCAGAGTCGTTGCGTACTC 60.387 55.000 10.68 10.68 44.40 2.59
4635 4912 2.888513 GAGTCGTTGCGTACTCTACA 57.111 50.000 11.11 0.00 39.24 2.74
4636 4913 3.402058 GAGTCGTTGCGTACTCTACAT 57.598 47.619 11.11 0.00 39.24 2.29
4637 4914 4.526970 GAGTCGTTGCGTACTCTACATA 57.473 45.455 11.11 0.00 39.24 2.29
4638 4915 4.516359 GAGTCGTTGCGTACTCTACATAG 58.484 47.826 11.11 0.00 39.24 2.23
4639 4916 3.937706 AGTCGTTGCGTACTCTACATAGT 59.062 43.478 0.00 0.00 0.00 2.12
4640 4917 4.027065 GTCGTTGCGTACTCTACATAGTG 58.973 47.826 0.00 0.00 0.00 2.74
4641 4918 3.686241 TCGTTGCGTACTCTACATAGTGT 59.314 43.478 0.00 0.00 34.72 3.55
4642 4919 3.784468 CGTTGCGTACTCTACATAGTGTG 59.216 47.826 4.30 0.00 32.83 3.82
4643 4920 4.670992 CGTTGCGTACTCTACATAGTGTGT 60.671 45.833 0.00 0.00 44.95 3.72
4644 4921 5.446340 CGTTGCGTACTCTACATAGTGTGTA 60.446 44.000 0.00 0.00 42.29 2.90
4659 4936 9.566432 ACATAGTGTGTAGTAGTAGTATTACCC 57.434 37.037 7.55 0.00 39.91 3.69
4660 4937 9.007901 CATAGTGTGTAGTAGTAGTATTACCCC 57.992 40.741 7.55 0.88 0.00 4.95
4661 4938 6.058183 AGTGTGTAGTAGTAGTATTACCCCG 58.942 44.000 7.55 0.00 0.00 5.73
4662 4939 4.821805 TGTGTAGTAGTAGTATTACCCCGC 59.178 45.833 7.55 0.00 0.00 6.13
4663 4940 4.821805 GTGTAGTAGTAGTATTACCCCGCA 59.178 45.833 7.55 0.00 0.00 5.69
4664 4941 5.299279 GTGTAGTAGTAGTATTACCCCGCAA 59.701 44.000 7.55 0.00 0.00 4.85
4665 4942 5.890985 TGTAGTAGTAGTATTACCCCGCAAA 59.109 40.000 7.55 0.00 0.00 3.68
4666 4943 5.937975 AGTAGTAGTATTACCCCGCAAAA 57.062 39.130 0.00 0.00 0.00 2.44
4667 4944 5.910614 AGTAGTAGTATTACCCCGCAAAAG 58.089 41.667 0.00 0.00 0.00 2.27
4668 4945 5.658190 AGTAGTAGTATTACCCCGCAAAAGA 59.342 40.000 0.00 0.00 0.00 2.52
4669 4946 5.425196 AGTAGTATTACCCCGCAAAAGAA 57.575 39.130 0.00 0.00 0.00 2.52
4670 4947 5.425630 AGTAGTATTACCCCGCAAAAGAAG 58.574 41.667 0.00 0.00 0.00 2.85
4671 4948 4.563140 AGTATTACCCCGCAAAAGAAGA 57.437 40.909 0.00 0.00 0.00 2.87
4672 4949 4.913784 AGTATTACCCCGCAAAAGAAGAA 58.086 39.130 0.00 0.00 0.00 2.52
4673 4950 5.318630 AGTATTACCCCGCAAAAGAAGAAA 58.681 37.500 0.00 0.00 0.00 2.52
4674 4951 5.771165 AGTATTACCCCGCAAAAGAAGAAAA 59.229 36.000 0.00 0.00 0.00 2.29
4675 4952 5.538849 ATTACCCCGCAAAAGAAGAAAAA 57.461 34.783 0.00 0.00 0.00 1.94
4676 4953 3.452755 ACCCCGCAAAAGAAGAAAAAG 57.547 42.857 0.00 0.00 0.00 2.27
4677 4954 2.764010 ACCCCGCAAAAGAAGAAAAAGT 59.236 40.909 0.00 0.00 0.00 2.66
4678 4955 3.123050 CCCCGCAAAAGAAGAAAAAGTG 58.877 45.455 0.00 0.00 0.00 3.16
4679 4956 3.430236 CCCCGCAAAAGAAGAAAAAGTGT 60.430 43.478 0.00 0.00 0.00 3.55
4680 4957 4.180817 CCCGCAAAAGAAGAAAAAGTGTT 58.819 39.130 0.00 0.00 0.00 3.32
4681 4958 4.032786 CCCGCAAAAGAAGAAAAAGTGTTG 59.967 41.667 0.00 0.00 0.00 3.33
4682 4959 4.862018 CCGCAAAAGAAGAAAAAGTGTTGA 59.138 37.500 0.00 0.00 0.00 3.18
4683 4960 5.004726 CCGCAAAAGAAGAAAAAGTGTTGAG 59.995 40.000 0.00 0.00 0.00 3.02
4684 4961 5.572896 CGCAAAAGAAGAAAAAGTGTTGAGT 59.427 36.000 0.00 0.00 0.00 3.41
4685 4962 6.745450 CGCAAAAGAAGAAAAAGTGTTGAGTA 59.255 34.615 0.00 0.00 0.00 2.59
4686 4963 7.044706 CGCAAAAGAAGAAAAAGTGTTGAGTAG 60.045 37.037 0.00 0.00 0.00 2.57
4687 4964 7.755373 GCAAAAGAAGAAAAAGTGTTGAGTAGT 59.245 33.333 0.00 0.00 0.00 2.73
4690 4967 9.668497 AAAGAAGAAAAAGTGTTGAGTAGTAGT 57.332 29.630 0.00 0.00 0.00 2.73
4701 4978 9.293404 AGTGTTGAGTAGTAGTATTGACTTACA 57.707 33.333 0.00 0.00 37.10 2.41
4711 4988 9.563748 AGTAGTATTGACTTACATACTCTCTCC 57.436 37.037 0.00 0.00 37.10 3.71
4712 4989 7.499321 AGTATTGACTTACATACTCTCTCCG 57.501 40.000 0.00 0.00 28.61 4.63
4713 4990 7.055378 AGTATTGACTTACATACTCTCTCCGT 58.945 38.462 0.00 0.00 28.61 4.69
4714 4991 6.777213 ATTGACTTACATACTCTCTCCGTT 57.223 37.500 0.00 0.00 0.00 4.44
4715 4992 6.585695 TTGACTTACATACTCTCTCCGTTT 57.414 37.500 0.00 0.00 0.00 3.60
4716 4993 6.192234 TGACTTACATACTCTCTCCGTTTC 57.808 41.667 0.00 0.00 0.00 2.78
4717 4994 5.944599 TGACTTACATACTCTCTCCGTTTCT 59.055 40.000 0.00 0.00 0.00 2.52
4718 4995 6.433404 TGACTTACATACTCTCTCCGTTTCTT 59.567 38.462 0.00 0.00 0.00 2.52
4719 4996 7.039923 TGACTTACATACTCTCTCCGTTTCTTT 60.040 37.037 0.00 0.00 0.00 2.52
4720 4997 8.345724 ACTTACATACTCTCTCCGTTTCTTTA 57.654 34.615 0.00 0.00 0.00 1.85
4721 4998 8.968969 ACTTACATACTCTCTCCGTTTCTTTAT 58.031 33.333 0.00 0.00 0.00 1.40
4722 4999 9.453325 CTTACATACTCTCTCCGTTTCTTTATC 57.547 37.037 0.00 0.00 0.00 1.75
4723 5000 7.406031 ACATACTCTCTCCGTTTCTTTATCA 57.594 36.000 0.00 0.00 0.00 2.15
4724 5001 7.837863 ACATACTCTCTCCGTTTCTTTATCAA 58.162 34.615 0.00 0.00 0.00 2.57
4725 5002 7.760340 ACATACTCTCTCCGTTTCTTTATCAAC 59.240 37.037 0.00 0.00 0.00 3.18
4726 5003 6.097915 ACTCTCTCCGTTTCTTTATCAACA 57.902 37.500 0.00 0.00 0.00 3.33
4727 5004 6.522054 ACTCTCTCCGTTTCTTTATCAACAA 58.478 36.000 0.00 0.00 0.00 2.83
4728 5005 7.162082 ACTCTCTCCGTTTCTTTATCAACAAT 58.838 34.615 0.00 0.00 0.00 2.71
4729 5006 7.661847 ACTCTCTCCGTTTCTTTATCAACAATT 59.338 33.333 0.00 0.00 0.00 2.32
4730 5007 9.151471 CTCTCTCCGTTTCTTTATCAACAATTA 57.849 33.333 0.00 0.00 0.00 1.40
4731 5008 9.151471 TCTCTCCGTTTCTTTATCAACAATTAG 57.849 33.333 0.00 0.00 0.00 1.73
4732 5009 9.151471 CTCTCCGTTTCTTTATCAACAATTAGA 57.849 33.333 0.00 0.00 0.00 2.10
4733 5010 9.151471 TCTCCGTTTCTTTATCAACAATTAGAG 57.849 33.333 0.00 0.00 0.00 2.43
4734 5011 7.748847 TCCGTTTCTTTATCAACAATTAGAGC 58.251 34.615 0.00 0.00 0.00 4.09
4735 5012 7.389330 TCCGTTTCTTTATCAACAATTAGAGCA 59.611 33.333 0.00 0.00 0.00 4.26
4736 5013 8.184192 CCGTTTCTTTATCAACAATTAGAGCAT 58.816 33.333 0.00 0.00 0.00 3.79
4737 5014 9.003112 CGTTTCTTTATCAACAATTAGAGCATG 57.997 33.333 0.00 0.00 0.00 4.06
4746 5023 8.920509 TCAACAATTAGAGCATGAAATCAATG 57.079 30.769 0.00 0.00 0.00 2.82
4747 5024 8.525316 TCAACAATTAGAGCATGAAATCAATGT 58.475 29.630 0.00 0.00 0.00 2.71
4748 5025 9.146984 CAACAATTAGAGCATGAAATCAATGTT 57.853 29.630 0.00 0.00 0.00 2.71
4756 5033 9.053840 AGAGCATGAAATCAATGTTAGTAGATG 57.946 33.333 0.00 0.00 0.00 2.90
4757 5034 7.646314 AGCATGAAATCAATGTTAGTAGATGC 58.354 34.615 0.00 0.00 33.19 3.91
4758 5035 7.283807 AGCATGAAATCAATGTTAGTAGATGCA 59.716 33.333 0.00 0.00 35.00 3.96
4759 5036 8.080417 GCATGAAATCAATGTTAGTAGATGCAT 58.920 33.333 0.00 0.00 33.23 3.96
4760 5037 9.608617 CATGAAATCAATGTTAGTAGATGCATC 57.391 33.333 19.37 19.37 0.00 3.91
4761 5038 8.735692 TGAAATCAATGTTAGTAGATGCATCA 57.264 30.769 27.81 11.65 0.00 3.07
4762 5039 9.346005 TGAAATCAATGTTAGTAGATGCATCAT 57.654 29.630 27.81 15.54 0.00 2.45
4763 5040 9.608617 GAAATCAATGTTAGTAGATGCATCATG 57.391 33.333 27.81 11.79 0.00 3.07
4764 5041 7.683437 ATCAATGTTAGTAGATGCATCATGG 57.317 36.000 27.81 9.57 0.00 3.66
4765 5042 6.829849 TCAATGTTAGTAGATGCATCATGGA 58.170 36.000 27.81 11.70 0.00 3.41
4766 5043 7.281841 TCAATGTTAGTAGATGCATCATGGAA 58.718 34.615 27.81 13.58 0.00 3.53
4767 5044 7.940688 TCAATGTTAGTAGATGCATCATGGAAT 59.059 33.333 27.81 11.85 0.00 3.01
4787 5064 8.492673 TGGAATGAATTTCGATACCATATAGC 57.507 34.615 0.00 0.00 34.98 2.97
4788 5065 7.552687 TGGAATGAATTTCGATACCATATAGCC 59.447 37.037 0.00 0.00 34.98 3.93
4789 5066 7.770897 GGAATGAATTTCGATACCATATAGCCT 59.229 37.037 0.00 0.00 34.98 4.58
4790 5067 9.167311 GAATGAATTTCGATACCATATAGCCTT 57.833 33.333 0.00 0.00 0.00 4.35
4792 5069 9.823647 ATGAATTTCGATACCATATAGCCTTAG 57.176 33.333 0.00 0.00 0.00 2.18
4793 5070 8.812972 TGAATTTCGATACCATATAGCCTTAGT 58.187 33.333 0.00 0.00 0.00 2.24
4800 5077 9.680315 CGATACCATATAGCCTTAGTATAAAGC 57.320 37.037 0.00 0.00 0.00 3.51
4831 5108 8.178313 TGTAGATGTTGATATATATAGGGCCG 57.822 38.462 0.00 0.00 0.00 6.13
4832 5109 6.102897 AGATGTTGATATATATAGGGCCGC 57.897 41.667 0.00 0.00 0.00 6.53
4833 5110 4.316205 TGTTGATATATATAGGGCCGCG 57.684 45.455 0.00 0.00 0.00 6.46
4834 5111 3.057734 GTTGATATATATAGGGCCGCGC 58.942 50.000 0.00 0.00 0.00 6.86
4835 5112 2.594131 TGATATATATAGGGCCGCGCT 58.406 47.619 15.04 15.04 0.00 5.92
4836 5113 3.758425 TGATATATATAGGGCCGCGCTA 58.242 45.455 18.46 18.46 33.62 4.26
4837 5114 4.341487 TGATATATATAGGGCCGCGCTAT 58.659 43.478 27.29 27.29 41.39 2.97
4838 5115 4.770531 TGATATATATAGGGCCGCGCTATT 59.229 41.667 28.76 19.85 39.65 1.73
4839 5116 3.662247 ATATATAGGGCCGCGCTATTC 57.338 47.619 28.76 0.00 39.65 1.75
4840 5117 0.464452 ATATAGGGCCGCGCTATTCC 59.536 55.000 28.76 4.26 39.65 3.01
4841 5118 0.613853 TATAGGGCCGCGCTATTCCT 60.614 55.000 28.76 12.91 39.65 3.36
4842 5119 1.889530 ATAGGGCCGCGCTATTCCTC 61.890 60.000 21.07 0.00 36.44 3.71
4843 5120 4.235762 GGGCCGCGCTATTCCTCA 62.236 66.667 5.56 0.00 0.00 3.86
4844 5121 2.031163 GGCCGCGCTATTCCTCAT 59.969 61.111 5.56 0.00 0.00 2.90
4845 5122 2.029844 GGCCGCGCTATTCCTCATC 61.030 63.158 5.56 0.00 0.00 2.92
4846 5123 2.029844 GCCGCGCTATTCCTCATCC 61.030 63.158 5.56 0.00 0.00 3.51
4847 5124 1.668294 CCGCGCTATTCCTCATCCT 59.332 57.895 5.56 0.00 0.00 3.24
4848 5125 0.668706 CCGCGCTATTCCTCATCCTG 60.669 60.000 5.56 0.00 0.00 3.86
4849 5126 0.668706 CGCGCTATTCCTCATCCTGG 60.669 60.000 5.56 0.00 0.00 4.45
4850 5127 0.321122 GCGCTATTCCTCATCCTGGG 60.321 60.000 0.00 0.00 0.00 4.45
4851 5128 1.051812 CGCTATTCCTCATCCTGGGT 58.948 55.000 0.00 0.00 0.00 4.51
4852 5129 1.270518 CGCTATTCCTCATCCTGGGTG 60.271 57.143 0.00 0.00 0.00 4.61
4853 5130 2.050144 GCTATTCCTCATCCTGGGTGA 58.950 52.381 9.73 9.73 0.00 4.02
4854 5131 2.038295 GCTATTCCTCATCCTGGGTGAG 59.962 54.545 26.79 26.79 42.11 3.51
4867 5144 5.896073 CCTGGGTGAGGAATACTTATTCT 57.104 43.478 8.53 0.00 46.33 2.40
4868 5145 6.253946 CCTGGGTGAGGAATACTTATTCTT 57.746 41.667 8.53 1.70 46.33 2.52
4869 5146 6.292150 CCTGGGTGAGGAATACTTATTCTTC 58.708 44.000 12.11 12.11 46.33 2.87
4875 5152 7.079451 TGAGGAATACTTATTCTTCATCCCC 57.921 40.000 15.99 0.00 46.85 4.81
4876 5153 6.851836 TGAGGAATACTTATTCTTCATCCCCT 59.148 38.462 15.99 1.84 46.85 4.79
4877 5154 7.016661 TGAGGAATACTTATTCTTCATCCCCTC 59.983 40.741 15.99 9.56 46.85 4.30
4878 5155 7.085601 AGGAATACTTATTCTTCATCCCCTCT 58.914 38.462 8.53 0.00 41.33 3.69
4879 5156 7.236640 AGGAATACTTATTCTTCATCCCCTCTC 59.763 40.741 8.53 0.00 41.33 3.20
4880 5157 7.236640 GGAATACTTATTCTTCATCCCCTCTCT 59.763 40.741 8.53 0.00 41.33 3.10
4881 5158 9.315363 GAATACTTATTCTTCATCCCCTCTCTA 57.685 37.037 2.27 0.00 39.13 2.43
4882 5159 9.676129 AATACTTATTCTTCATCCCCTCTCTAA 57.324 33.333 0.00 0.00 0.00 2.10
4883 5160 9.851267 ATACTTATTCTTCATCCCCTCTCTAAT 57.149 33.333 0.00 0.00 0.00 1.73
4884 5161 8.574309 ACTTATTCTTCATCCCCTCTCTAATT 57.426 34.615 0.00 0.00 0.00 1.40
4885 5162 9.008584 ACTTATTCTTCATCCCCTCTCTAATTT 57.991 33.333 0.00 0.00 0.00 1.82
4886 5163 9.282569 CTTATTCTTCATCCCCTCTCTAATTTG 57.717 37.037 0.00 0.00 0.00 2.32
4887 5164 6.642733 TTCTTCATCCCCTCTCTAATTTGT 57.357 37.500 0.00 0.00 0.00 2.83
4888 5165 6.240549 TCTTCATCCCCTCTCTAATTTGTC 57.759 41.667 0.00 0.00 0.00 3.18
4889 5166 5.726308 TCTTCATCCCCTCTCTAATTTGTCA 59.274 40.000 0.00 0.00 0.00 3.58
4890 5167 6.388100 TCTTCATCCCCTCTCTAATTTGTCAT 59.612 38.462 0.00 0.00 0.00 3.06
4891 5168 6.179906 TCATCCCCTCTCTAATTTGTCATC 57.820 41.667 0.00 0.00 0.00 2.92
4892 5169 5.667172 TCATCCCCTCTCTAATTTGTCATCA 59.333 40.000 0.00 0.00 0.00 3.07
4893 5170 6.158520 TCATCCCCTCTCTAATTTGTCATCAA 59.841 38.462 0.00 0.00 0.00 2.57
4894 5171 6.581388 TCCCCTCTCTAATTTGTCATCAAT 57.419 37.500 0.00 0.00 33.32 2.57
4895 5172 6.359804 TCCCCTCTCTAATTTGTCATCAATG 58.640 40.000 0.00 0.00 33.32 2.82
4896 5173 5.009410 CCCCTCTCTAATTTGTCATCAATGC 59.991 44.000 0.00 0.00 33.32 3.56
4897 5174 5.591472 CCCTCTCTAATTTGTCATCAATGCA 59.409 40.000 0.00 0.00 33.32 3.96
4898 5175 6.095860 CCCTCTCTAATTTGTCATCAATGCAA 59.904 38.462 0.00 0.00 33.32 4.08
4899 5176 6.971184 CCTCTCTAATTTGTCATCAATGCAAC 59.029 38.462 0.00 0.00 33.32 4.17
4900 5177 6.545508 TCTCTAATTTGTCATCAATGCAACG 58.454 36.000 0.00 0.00 33.32 4.10
4901 5178 6.149308 TCTCTAATTTGTCATCAATGCAACGT 59.851 34.615 0.00 0.00 33.32 3.99
4902 5179 7.333174 TCTCTAATTTGTCATCAATGCAACGTA 59.667 33.333 0.00 0.00 33.32 3.57
4903 5180 7.984391 TCTAATTTGTCATCAATGCAACGTAT 58.016 30.769 0.00 0.00 33.32 3.06
4904 5181 8.458052 TCTAATTTGTCATCAATGCAACGTATT 58.542 29.630 0.00 0.00 33.32 1.89
4905 5182 7.887996 AATTTGTCATCAATGCAACGTATTT 57.112 28.000 0.00 0.00 33.32 1.40
4906 5183 7.887996 ATTTGTCATCAATGCAACGTATTTT 57.112 28.000 0.00 0.00 33.32 1.82
4907 5184 8.978564 ATTTGTCATCAATGCAACGTATTTTA 57.021 26.923 0.00 0.00 33.32 1.52
4908 5185 7.789341 TTGTCATCAATGCAACGTATTTTAC 57.211 32.000 0.00 0.00 0.00 2.01
4909 5186 7.060059 TTTGTCATCAATGCAACGTATTTTACG 59.940 33.333 5.58 5.58 44.06 3.18
4968 5245 8.838452 AGAGAACGTAAGAAAATATGTACTCG 57.162 34.615 0.00 0.00 43.62 4.18
4969 5246 7.431668 AGAGAACGTAAGAAAATATGTACTCGC 59.568 37.037 0.00 0.00 43.62 5.03
4970 5247 6.474751 AGAACGTAAGAAAATATGTACTCGCC 59.525 38.462 0.00 0.00 43.62 5.54
4971 5248 4.736793 ACGTAAGAAAATATGTACTCGCCG 59.263 41.667 0.00 0.00 43.62 6.46
4972 5249 4.736793 CGTAAGAAAATATGTACTCGCCGT 59.263 41.667 0.00 0.00 43.02 5.68
4973 5250 5.909054 CGTAAGAAAATATGTACTCGCCGTA 59.091 40.000 0.00 0.00 43.02 4.02
4974 5251 6.414694 CGTAAGAAAATATGTACTCGCCGTAA 59.585 38.462 0.00 0.00 43.02 3.18
4975 5252 7.044117 CGTAAGAAAATATGTACTCGCCGTAAA 60.044 37.037 0.00 0.00 43.02 2.01
4976 5253 7.599630 AAGAAAATATGTACTCGCCGTAAAA 57.400 32.000 0.00 0.00 0.00 1.52
4977 5254 7.781548 AGAAAATATGTACTCGCCGTAAAAT 57.218 32.000 0.00 0.00 0.00 1.82
4978 5255 8.876275 AGAAAATATGTACTCGCCGTAAAATA 57.124 30.769 0.00 0.00 0.00 1.40
4979 5256 9.485206 AGAAAATATGTACTCGCCGTAAAATAT 57.515 29.630 0.00 0.00 0.00 1.28
4980 5257 9.525007 GAAAATATGTACTCGCCGTAAAATATG 57.475 33.333 0.00 0.00 0.00 1.78
4981 5258 8.597662 AAATATGTACTCGCCGTAAAATATGT 57.402 30.769 0.00 0.00 0.00 2.29
4982 5259 8.597662 AATATGTACTCGCCGTAAAATATGTT 57.402 30.769 0.00 0.00 0.00 2.71
4983 5260 9.695526 AATATGTACTCGCCGTAAAATATGTTA 57.304 29.630 0.00 0.00 0.00 2.41
4984 5261 6.810888 TGTACTCGCCGTAAAATATGTTAC 57.189 37.500 5.79 5.79 0.00 2.50
4985 5262 6.328714 TGTACTCGCCGTAAAATATGTTACA 58.671 36.000 14.75 0.00 34.25 2.41
4986 5263 6.979817 TGTACTCGCCGTAAAATATGTTACAT 59.020 34.615 14.75 2.58 34.25 2.29
4987 5264 8.134261 TGTACTCGCCGTAAAATATGTTACATA 58.866 33.333 14.75 7.56 34.25 2.29
4988 5265 8.967218 GTACTCGCCGTAAAATATGTTACATAA 58.033 33.333 14.75 0.00 34.25 1.90
4989 5266 8.422973 ACTCGCCGTAAAATATGTTACATAAA 57.577 30.769 14.75 0.00 34.25 1.40
4990 5267 8.881743 ACTCGCCGTAAAATATGTTACATAAAA 58.118 29.630 14.75 0.00 34.25 1.52
4991 5268 9.872757 CTCGCCGTAAAATATGTTACATAAAAT 57.127 29.630 14.75 1.50 34.25 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.671987 AGAGTTAGCCACATCCTATACATTAT 57.328 34.615 0.00 0.00 0.00 1.28
1 2 8.367911 CAAGAGTTAGCCACATCCTATACATTA 58.632 37.037 0.00 0.00 0.00 1.90
4 5 5.661312 ACAAGAGTTAGCCACATCCTATACA 59.339 40.000 0.00 0.00 0.00 2.29
12 13 9.515226 TTTAATCTAAACAAGAGTTAGCCACAT 57.485 29.630 0.00 0.00 37.74 3.21
115 117 7.810260 AGAATTGGCACTCTTATCTAATTCCT 58.190 34.615 0.00 0.00 35.01 3.36
123 125 7.665690 TCTAGATGAGAATTGGCACTCTTATC 58.334 38.462 16.75 16.75 35.80 1.75
126 128 5.946942 TCTAGATGAGAATTGGCACTCTT 57.053 39.130 5.36 0.00 34.65 2.85
157 159 3.457610 TTCTCAAAAAGTACGACGGGT 57.542 42.857 0.00 0.00 0.00 5.28
158 160 4.799419 TTTTCTCAAAAAGTACGACGGG 57.201 40.909 0.00 0.00 30.90 5.28
180 191 9.719355 TTTTGTGACAAGCTGTATTCTATAAGA 57.281 29.630 0.00 0.00 0.00 2.10
191 202 4.977963 CGAATTCATTTTGTGACAAGCTGT 59.022 37.500 6.22 0.00 36.32 4.40
212 223 7.808672 TGTTTTTAAGAAGAAACAAGACACGA 58.191 30.769 1.58 0.00 41.33 4.35
213 224 8.442605 TTGTTTTTAAGAAGAAACAAGACACG 57.557 30.769 10.45 0.00 45.54 4.49
225 236 9.643693 ATGATGGCACTAATTGTTTTTAAGAAG 57.356 29.630 0.00 0.00 0.00 2.85
236 254 5.163530 TGCAAGGTAATGATGGCACTAATTG 60.164 40.000 0.00 0.00 0.00 2.32
245 263 8.632679 AGTAATAACATTGCAAGGTAATGATGG 58.367 33.333 18.21 0.00 38.55 3.51
274 292 3.188460 CCTTGATTTAACCTGACCACACG 59.812 47.826 0.00 0.00 0.00 4.49
282 300 7.681939 TTAGTTACTGCCTTGATTTAACCTG 57.318 36.000 0.00 0.00 0.00 4.00
313 331 2.155732 CCACGACACTGACTTTGAATCG 59.844 50.000 0.00 0.00 0.00 3.34
324 342 4.868450 TTGAACTAAAACCACGACACTG 57.132 40.909 0.00 0.00 0.00 3.66
374 393 2.615747 GGCCTAACCAGAGAAGAACACC 60.616 54.545 0.00 0.00 38.86 4.16
458 479 9.359653 CCTTTTCCTAACATCTGAAATATGGAT 57.640 33.333 0.00 0.00 0.00 3.41
459 480 8.556589 TCCTTTTCCTAACATCTGAAATATGGA 58.443 33.333 0.00 0.00 0.00 3.41
460 481 8.752005 TCCTTTTCCTAACATCTGAAATATGG 57.248 34.615 0.00 0.00 0.00 2.74
466 487 7.470192 AGGATTTCCTTTTCCTAACATCTGAA 58.530 34.615 0.00 0.00 46.09 3.02
513 567 8.282455 TGAACAGTTGTACTTACAATTTTCCA 57.718 30.769 5.16 0.39 46.56 3.53
525 579 3.162666 TCTCCCGATGAACAGTTGTACT 58.837 45.455 0.00 0.00 0.00 2.73
534 588 4.635765 TGTTTGATGAATCTCCCGATGAAC 59.364 41.667 0.00 0.00 0.00 3.18
582 658 4.741781 GTGGATGCACGCACGCAC 62.742 66.667 0.10 0.00 46.56 5.34
701 777 4.263949 TGGGAGGGAAGGAAAAATCTCTTC 60.264 45.833 0.00 0.00 36.95 2.87
702 778 3.662642 TGGGAGGGAAGGAAAAATCTCTT 59.337 43.478 0.00 0.00 0.00 2.85
768 844 1.456705 ATGGAGGTCGGAGGAGAGC 60.457 63.158 0.00 0.00 38.79 4.09
769 845 1.112315 CCATGGAGGTCGGAGGAGAG 61.112 65.000 5.56 0.00 0.00 3.20
949 1058 2.141448 GTTCTCCTCCCCGATCCCC 61.141 68.421 0.00 0.00 0.00 4.81
952 1061 0.461961 CTGTGTTCTCCTCCCCGATC 59.538 60.000 0.00 0.00 0.00 3.69
960 1069 0.478507 CCAAACCCCTGTGTTCTCCT 59.521 55.000 0.00 0.00 0.00 3.69
963 1072 1.152546 GCCCAAACCCCTGTGTTCT 60.153 57.895 0.00 0.00 0.00 3.01
967 1076 2.672996 CGAGCCCAAACCCCTGTG 60.673 66.667 0.00 0.00 0.00 3.66
969 1078 4.740822 CCCGAGCCCAAACCCCTG 62.741 72.222 0.00 0.00 0.00 4.45
1006 1116 2.747855 GCCCAGAAACCTCAGCGG 60.748 66.667 0.00 0.00 39.35 5.52
1302 1421 4.720902 TCCACGTCGGGCCTCGTA 62.721 66.667 19.64 6.45 38.52 3.43
1479 1598 4.689549 TTCTCCTCGTCCCCGCCA 62.690 66.667 0.00 0.00 0.00 5.69
1581 1700 1.066587 CTCCTTGGCGTCCTCGATC 59.933 63.158 0.00 0.00 39.71 3.69
1608 1727 3.679917 CGATGTTGCAGAGGTAGGACATT 60.680 47.826 0.00 0.00 0.00 2.71
1701 1820 1.094785 CCGTGATTGTTAAGCAGGGG 58.905 55.000 9.86 0.00 46.07 4.79
1707 1826 0.725117 GACCGGCCGTGATTGTTAAG 59.275 55.000 26.12 6.79 0.00 1.85
1761 1880 4.262036 CCTGCTGTACCGAAATGAGCTATA 60.262 45.833 0.00 0.00 0.00 1.31
1762 1881 3.493350 CCTGCTGTACCGAAATGAGCTAT 60.493 47.826 0.00 0.00 0.00 2.97
1763 1882 2.159099 CCTGCTGTACCGAAATGAGCTA 60.159 50.000 0.00 0.00 0.00 3.32
1764 1883 1.406069 CCTGCTGTACCGAAATGAGCT 60.406 52.381 0.00 0.00 0.00 4.09
1765 1884 1.009829 CCTGCTGTACCGAAATGAGC 58.990 55.000 0.00 0.00 0.00 4.26
1793 1912 7.765307 TGAATCTAGCTTTGCATTCCTAAAAG 58.235 34.615 0.00 0.00 34.68 2.27
1849 1969 2.708861 ACAAGTACTTCACCATCACCCA 59.291 45.455 4.77 0.00 0.00 4.51
1965 2136 3.194755 GGGCACCGAAATTTTCTACCAAT 59.805 43.478 7.50 0.00 40.86 3.16
1966 2137 2.559231 GGGCACCGAAATTTTCTACCAA 59.441 45.455 7.50 0.00 40.86 3.67
1988 2167 5.830912 TGCAGTGTTAGGAAAACTTGAATG 58.169 37.500 0.00 0.00 0.00 2.67
2334 2519 0.538118 ACAATGGCCATGATGGTTGC 59.462 50.000 21.63 0.00 40.46 4.17
2489 2674 5.393461 GCAAATAAACCATTCAGAGGGACAG 60.393 44.000 0.00 0.00 0.00 3.51
2522 2707 2.119801 AGTATCTTGTGCTGCCTTGG 57.880 50.000 0.00 0.00 0.00 3.61
2609 2796 2.096496 CGAGCAAAATAAGTGCCAGGAG 59.904 50.000 0.00 0.00 43.27 3.69
2615 2802 3.062099 TCACGATCGAGCAAAATAAGTGC 59.938 43.478 24.34 0.00 42.55 4.40
2634 2821 5.371115 TGCCAGTAAAATAAGCAAGTCAC 57.629 39.130 0.00 0.00 0.00 3.67
2702 2889 3.429410 GGCATACCTCAAATTTGACTGGC 60.429 47.826 20.81 19.25 32.90 4.85
2728 2915 8.971321 CAACAGAAAAGGTTAACATGATTGAAG 58.029 33.333 8.10 0.00 0.00 3.02
2738 2925 7.770801 AAATGAAGCAACAGAAAAGGTTAAC 57.229 32.000 0.00 0.00 0.00 2.01
2744 2931 8.642020 GCATAACTAAATGAAGCAACAGAAAAG 58.358 33.333 0.00 0.00 0.00 2.27
2746 2933 7.656412 TGCATAACTAAATGAAGCAACAGAAA 58.344 30.769 0.00 0.00 0.00 2.52
2753 2940 6.546772 TCCATGATGCATAACTAAATGAAGCA 59.453 34.615 0.00 0.00 35.34 3.91
2787 2974 4.389992 ACGAAATGCACAGAGATTACAGTG 59.610 41.667 0.00 0.00 35.19 3.66
2788 2975 4.569943 ACGAAATGCACAGAGATTACAGT 58.430 39.130 0.00 0.00 0.00 3.55
2789 2976 6.643845 CATACGAAATGCACAGAGATTACAG 58.356 40.000 0.00 0.00 0.00 2.74
2809 3063 1.068250 GAGTCCCTGGAGCGCATAC 59.932 63.158 11.47 0.00 0.00 2.39
2966 3220 4.771590 TTAGATTCACAAGCAAAGCCAG 57.228 40.909 0.00 0.00 0.00 4.85
3091 3345 2.293318 ATGACTCTTCGGCAGCCCA 61.293 57.895 5.63 0.00 0.00 5.36
3154 3408 2.905075 TGGTCAGGATAATTGCACGAG 58.095 47.619 0.00 0.00 0.00 4.18
3319 3574 6.264744 TCATGGACCTCGGTTATCTAGTAAAG 59.735 42.308 0.00 0.00 0.00 1.85
3332 3587 2.029666 GGCGATCATGGACCTCGG 59.970 66.667 3.37 0.00 33.17 4.63
3346 3601 1.331854 CGTTGCAACAACAAAATGGCG 60.332 47.619 28.01 6.83 0.00 5.69
3400 3655 7.041780 ACCGATGAATGTGCTTATCTATTGTTC 60.042 37.037 0.00 0.00 0.00 3.18
3507 3762 5.172687 TGGCATCAACCAATCACTACTAA 57.827 39.130 0.00 0.00 36.55 2.24
3557 3813 2.035449 GGACATGCATTGATCCCATGTG 59.965 50.000 17.53 6.94 46.74 3.21
3562 3818 0.672342 GCTGGACATGCATTGATCCC 59.328 55.000 15.61 5.98 0.00 3.85
3616 3874 7.989741 CAGTGAATTACAGAGAAGGGATTACAT 59.010 37.037 0.00 0.00 0.00 2.29
3915 4173 4.643387 ACCTCCTTGCGCACCACC 62.643 66.667 11.12 0.00 0.00 4.61
4032 4290 4.874977 GCCAGCTCGCCGTACCTC 62.875 72.222 0.00 0.00 0.00 3.85
4108 4366 2.042831 GCAGGAACAGCGCCAGAAT 61.043 57.895 2.29 0.00 0.00 2.40
4190 4448 3.988379 TCATCATCATCGTCGTCATCA 57.012 42.857 0.00 0.00 0.00 3.07
4191 4449 4.493703 CGTATCATCATCATCGTCGTCATC 59.506 45.833 0.00 0.00 0.00 2.92
4192 4450 4.083271 ACGTATCATCATCATCGTCGTCAT 60.083 41.667 0.00 0.00 0.00 3.06
4193 4451 3.250040 ACGTATCATCATCATCGTCGTCA 59.750 43.478 0.00 0.00 0.00 4.35
4194 4452 3.811514 ACGTATCATCATCATCGTCGTC 58.188 45.455 0.00 0.00 0.00 4.20
4195 4453 3.898517 ACGTATCATCATCATCGTCGT 57.101 42.857 0.00 0.00 0.00 4.34
4196 4454 4.959149 ACTACGTATCATCATCATCGTCG 58.041 43.478 0.00 0.00 33.70 5.12
4197 4455 5.795939 GGAACTACGTATCATCATCATCGTC 59.204 44.000 0.00 0.00 33.70 4.20
4198 4456 5.473846 AGGAACTACGTATCATCATCATCGT 59.526 40.000 0.00 0.00 36.02 3.73
4209 4467 4.853743 ACGAAACGAAAGGAACTACGTATC 59.146 41.667 0.00 0.00 46.55 2.24
4248 4506 8.408601 GGACAAAAGAATCATGTATGTAATGCT 58.591 33.333 0.00 0.00 0.00 3.79
4249 4507 7.376866 CGGACAAAAGAATCATGTATGTAATGC 59.623 37.037 0.00 0.00 0.00 3.56
4250 4508 8.611757 TCGGACAAAAGAATCATGTATGTAATG 58.388 33.333 0.00 0.00 0.00 1.90
4251 4509 8.731275 TCGGACAAAAGAATCATGTATGTAAT 57.269 30.769 0.00 0.00 0.00 1.89
4252 4510 7.201609 GCTCGGACAAAAGAATCATGTATGTAA 60.202 37.037 0.00 0.00 0.00 2.41
4254 4512 5.065218 GCTCGGACAAAAGAATCATGTATGT 59.935 40.000 0.00 0.00 0.00 2.29
4255 4513 5.295292 AGCTCGGACAAAAGAATCATGTATG 59.705 40.000 0.00 0.00 0.00 2.39
4256 4514 5.295292 CAGCTCGGACAAAAGAATCATGTAT 59.705 40.000 0.00 0.00 0.00 2.29
4298 4556 1.203928 GAGCATTCCGATCACGACAG 58.796 55.000 0.00 0.00 42.66 3.51
4354 4612 8.180317 TCATGTTAATCTGTTATACACACACG 57.820 34.615 0.00 0.00 0.00 4.49
4391 4649 3.671702 GCTTGCTGATGGTGCTTTTCTAC 60.672 47.826 0.00 0.00 0.00 2.59
4431 4703 3.585862 TGAGGCAACAACGATAAGAGAC 58.414 45.455 0.00 0.00 41.41 3.36
4500 4777 4.894114 GGTTATCTCCTACAGCTCAACCTA 59.106 45.833 0.00 0.00 33.10 3.08
4600 4877 3.376218 CTCTGCATGAGTAGGTGCC 57.624 57.895 0.00 0.00 40.56 5.01
4621 4898 4.730657 ACACACTATGTAGAGTACGCAAC 58.269 43.478 0.00 0.00 40.88 4.17
4633 4910 9.566432 GGGTAATACTACTACTACACACTATGT 57.434 37.037 0.00 0.00 46.06 2.29
4634 4911 9.007901 GGGGTAATACTACTACTACACACTATG 57.992 40.741 0.00 0.00 0.00 2.23
4635 4912 7.880195 CGGGGTAATACTACTACTACACACTAT 59.120 40.741 0.00 0.00 0.00 2.12
4636 4913 7.217200 CGGGGTAATACTACTACTACACACTA 58.783 42.308 0.00 0.00 0.00 2.74
4637 4914 6.058183 CGGGGTAATACTACTACTACACACT 58.942 44.000 0.00 0.00 0.00 3.55
4638 4915 5.278022 GCGGGGTAATACTACTACTACACAC 60.278 48.000 0.00 0.00 0.00 3.82
4639 4916 4.821805 GCGGGGTAATACTACTACTACACA 59.178 45.833 0.00 0.00 0.00 3.72
4640 4917 4.821805 TGCGGGGTAATACTACTACTACAC 59.178 45.833 0.00 0.00 0.00 2.90
4641 4918 5.047566 TGCGGGGTAATACTACTACTACA 57.952 43.478 0.00 0.00 0.00 2.74
4642 4919 6.391227 TTTGCGGGGTAATACTACTACTAC 57.609 41.667 0.00 0.00 0.00 2.73
4643 4920 6.833416 TCTTTTGCGGGGTAATACTACTACTA 59.167 38.462 0.00 0.00 0.00 1.82
4644 4921 5.658190 TCTTTTGCGGGGTAATACTACTACT 59.342 40.000 0.00 0.00 0.00 2.57
4645 4922 5.906073 TCTTTTGCGGGGTAATACTACTAC 58.094 41.667 0.00 0.00 0.00 2.73
4646 4923 6.380846 TCTTCTTTTGCGGGGTAATACTACTA 59.619 38.462 0.00 0.00 0.00 1.82
4647 4924 5.188359 TCTTCTTTTGCGGGGTAATACTACT 59.812 40.000 0.00 0.00 0.00 2.57
4648 4925 5.422145 TCTTCTTTTGCGGGGTAATACTAC 58.578 41.667 0.00 0.00 0.00 2.73
4649 4926 5.680594 TCTTCTTTTGCGGGGTAATACTA 57.319 39.130 0.00 0.00 0.00 1.82
4650 4927 4.563140 TCTTCTTTTGCGGGGTAATACT 57.437 40.909 0.00 0.00 0.00 2.12
4651 4928 5.632244 TTTCTTCTTTTGCGGGGTAATAC 57.368 39.130 0.00 0.00 0.00 1.89
4652 4929 6.265876 ACTTTTTCTTCTTTTGCGGGGTAATA 59.734 34.615 0.00 0.00 0.00 0.98
4653 4930 5.069914 ACTTTTTCTTCTTTTGCGGGGTAAT 59.930 36.000 0.00 0.00 0.00 1.89
4654 4931 4.403113 ACTTTTTCTTCTTTTGCGGGGTAA 59.597 37.500 0.00 0.00 0.00 2.85
4655 4932 3.955551 ACTTTTTCTTCTTTTGCGGGGTA 59.044 39.130 0.00 0.00 0.00 3.69
4656 4933 2.764010 ACTTTTTCTTCTTTTGCGGGGT 59.236 40.909 0.00 0.00 0.00 4.95
4657 4934 3.123050 CACTTTTTCTTCTTTTGCGGGG 58.877 45.455 0.00 0.00 0.00 5.73
4658 4935 3.780902 ACACTTTTTCTTCTTTTGCGGG 58.219 40.909 0.00 0.00 0.00 6.13
4659 4936 4.862018 TCAACACTTTTTCTTCTTTTGCGG 59.138 37.500 0.00 0.00 0.00 5.69
4660 4937 5.572896 ACTCAACACTTTTTCTTCTTTTGCG 59.427 36.000 0.00 0.00 0.00 4.85
4661 4938 6.951256 ACTCAACACTTTTTCTTCTTTTGC 57.049 33.333 0.00 0.00 0.00 3.68
4664 4941 9.668497 ACTACTACTCAACACTTTTTCTTCTTT 57.332 29.630 0.00 0.00 0.00 2.52
4675 4952 9.293404 TGTAAGTCAATACTACTACTCAACACT 57.707 33.333 0.00 0.00 33.75 3.55
4685 4962 9.563748 GGAGAGAGTATGTAAGTCAATACTACT 57.436 37.037 0.00 0.00 33.75 2.57
4686 4963 8.497554 CGGAGAGAGTATGTAAGTCAATACTAC 58.502 40.741 0.00 0.00 33.75 2.73
4687 4964 8.209584 ACGGAGAGAGTATGTAAGTCAATACTA 58.790 37.037 0.00 0.00 33.75 1.82
4688 4965 7.055378 ACGGAGAGAGTATGTAAGTCAATACT 58.945 38.462 0.00 0.00 37.65 2.12
4689 4966 7.261829 ACGGAGAGAGTATGTAAGTCAATAC 57.738 40.000 0.00 0.00 0.00 1.89
4690 4967 7.876936 AACGGAGAGAGTATGTAAGTCAATA 57.123 36.000 0.00 0.00 0.00 1.90
4691 4968 6.777213 AACGGAGAGAGTATGTAAGTCAAT 57.223 37.500 0.00 0.00 0.00 2.57
4692 4969 6.433404 AGAAACGGAGAGAGTATGTAAGTCAA 59.567 38.462 0.00 0.00 0.00 3.18
4693 4970 5.944599 AGAAACGGAGAGAGTATGTAAGTCA 59.055 40.000 0.00 0.00 0.00 3.41
4694 4971 6.439675 AGAAACGGAGAGAGTATGTAAGTC 57.560 41.667 0.00 0.00 0.00 3.01
4695 4972 6.837471 AAGAAACGGAGAGAGTATGTAAGT 57.163 37.500 0.00 0.00 0.00 2.24
4696 4973 9.453325 GATAAAGAAACGGAGAGAGTATGTAAG 57.547 37.037 0.00 0.00 0.00 2.34
4697 4974 8.963725 TGATAAAGAAACGGAGAGAGTATGTAA 58.036 33.333 0.00 0.00 0.00 2.41
4698 4975 8.515695 TGATAAAGAAACGGAGAGAGTATGTA 57.484 34.615 0.00 0.00 0.00 2.29
4699 4976 7.406031 TGATAAAGAAACGGAGAGAGTATGT 57.594 36.000 0.00 0.00 0.00 2.29
4700 4977 7.759886 TGTTGATAAAGAAACGGAGAGAGTATG 59.240 37.037 0.00 0.00 0.00 2.39
4701 4978 7.837863 TGTTGATAAAGAAACGGAGAGAGTAT 58.162 34.615 0.00 0.00 0.00 2.12
4702 4979 7.223260 TGTTGATAAAGAAACGGAGAGAGTA 57.777 36.000 0.00 0.00 0.00 2.59
4703 4980 6.097915 TGTTGATAAAGAAACGGAGAGAGT 57.902 37.500 0.00 0.00 0.00 3.24
4704 4981 7.602517 ATTGTTGATAAAGAAACGGAGAGAG 57.397 36.000 0.00 0.00 0.00 3.20
4705 4982 7.979444 AATTGTTGATAAAGAAACGGAGAGA 57.021 32.000 0.00 0.00 0.00 3.10
4706 4983 9.151471 TCTAATTGTTGATAAAGAAACGGAGAG 57.849 33.333 0.00 0.00 0.00 3.20
4707 4984 9.151471 CTCTAATTGTTGATAAAGAAACGGAGA 57.849 33.333 0.00 0.00 0.00 3.71
4708 4985 7.905493 GCTCTAATTGTTGATAAAGAAACGGAG 59.095 37.037 0.00 0.00 0.00 4.63
4709 4986 7.389330 TGCTCTAATTGTTGATAAAGAAACGGA 59.611 33.333 0.00 0.00 0.00 4.69
4710 4987 7.526608 TGCTCTAATTGTTGATAAAGAAACGG 58.473 34.615 0.00 0.00 0.00 4.44
4711 4988 9.003112 CATGCTCTAATTGTTGATAAAGAAACG 57.997 33.333 0.00 0.00 0.00 3.60
4720 4997 9.529325 CATTGATTTCATGCTCTAATTGTTGAT 57.471 29.630 0.00 0.00 0.00 2.57
4721 4998 8.525316 ACATTGATTTCATGCTCTAATTGTTGA 58.475 29.630 0.00 0.00 0.00 3.18
4722 4999 8.697846 ACATTGATTTCATGCTCTAATTGTTG 57.302 30.769 0.00 0.00 0.00 3.33
4730 5007 9.053840 CATCTACTAACATTGATTTCATGCTCT 57.946 33.333 0.00 0.00 0.00 4.09
4731 5008 7.802251 GCATCTACTAACATTGATTTCATGCTC 59.198 37.037 0.00 0.00 31.18 4.26
4732 5009 7.283807 TGCATCTACTAACATTGATTTCATGCT 59.716 33.333 0.00 0.00 34.24 3.79
4733 5010 7.420002 TGCATCTACTAACATTGATTTCATGC 58.580 34.615 0.00 0.00 33.82 4.06
4734 5011 9.608617 GATGCATCTACTAACATTGATTTCATG 57.391 33.333 19.70 0.00 0.00 3.07
4735 5012 9.346005 TGATGCATCTACTAACATTGATTTCAT 57.654 29.630 26.32 0.00 0.00 2.57
4736 5013 8.735692 TGATGCATCTACTAACATTGATTTCA 57.264 30.769 26.32 0.00 0.00 2.69
4737 5014 9.608617 CATGATGCATCTACTAACATTGATTTC 57.391 33.333 26.32 0.00 0.00 2.17
4738 5015 8.573885 CCATGATGCATCTACTAACATTGATTT 58.426 33.333 26.32 0.00 0.00 2.17
4739 5016 7.940688 TCCATGATGCATCTACTAACATTGATT 59.059 33.333 26.32 0.00 0.00 2.57
4740 5017 7.455891 TCCATGATGCATCTACTAACATTGAT 58.544 34.615 26.32 5.19 0.00 2.57
4741 5018 6.829849 TCCATGATGCATCTACTAACATTGA 58.170 36.000 26.32 9.58 0.00 2.57
4742 5019 7.500720 TTCCATGATGCATCTACTAACATTG 57.499 36.000 26.32 7.50 0.00 2.82
4743 5020 7.940688 TCATTCCATGATGCATCTACTAACATT 59.059 33.333 26.32 2.09 33.59 2.71
4744 5021 7.455891 TCATTCCATGATGCATCTACTAACAT 58.544 34.615 26.32 8.49 33.59 2.71
4745 5022 6.829849 TCATTCCATGATGCATCTACTAACA 58.170 36.000 26.32 6.35 33.59 2.41
4746 5023 7.734924 TTCATTCCATGATGCATCTACTAAC 57.265 36.000 26.32 0.05 39.39 2.34
4747 5024 8.929260 AATTCATTCCATGATGCATCTACTAA 57.071 30.769 26.32 15.71 39.39 2.24
4748 5025 8.929260 AAATTCATTCCATGATGCATCTACTA 57.071 30.769 26.32 7.58 39.39 1.82
4749 5026 7.308408 CGAAATTCATTCCATGATGCATCTACT 60.308 37.037 26.32 9.42 39.39 2.57
4750 5027 6.800408 CGAAATTCATTCCATGATGCATCTAC 59.200 38.462 26.32 2.39 39.39 2.59
4751 5028 6.711645 TCGAAATTCATTCCATGATGCATCTA 59.288 34.615 26.32 13.82 39.39 1.98
4752 5029 5.533528 TCGAAATTCATTCCATGATGCATCT 59.466 36.000 26.32 10.21 39.39 2.90
4753 5030 5.765176 TCGAAATTCATTCCATGATGCATC 58.235 37.500 20.14 20.14 39.39 3.91
4754 5031 5.777850 TCGAAATTCATTCCATGATGCAT 57.222 34.783 0.00 0.00 39.39 3.96
4755 5032 5.777850 ATCGAAATTCATTCCATGATGCA 57.222 34.783 0.00 0.00 39.39 3.96
4756 5033 6.088824 GGTATCGAAATTCATTCCATGATGC 58.911 40.000 0.00 0.00 39.39 3.91
4757 5034 7.205737 TGGTATCGAAATTCATTCCATGATG 57.794 36.000 0.00 0.00 39.39 3.07
4758 5035 9.690913 ATATGGTATCGAAATTCATTCCATGAT 57.309 29.630 17.71 5.30 39.39 2.45
4761 5038 9.113838 GCTATATGGTATCGAAATTCATTCCAT 57.886 33.333 15.09 15.09 37.96 3.41
4762 5039 7.552687 GGCTATATGGTATCGAAATTCATTCCA 59.447 37.037 0.00 0.87 34.34 3.53
4763 5040 7.770897 AGGCTATATGGTATCGAAATTCATTCC 59.229 37.037 0.00 0.00 34.34 3.01
4764 5041 8.723942 AGGCTATATGGTATCGAAATTCATTC 57.276 34.615 0.00 0.00 34.52 2.67
4766 5043 9.823647 CTAAGGCTATATGGTATCGAAATTCAT 57.176 33.333 0.00 0.00 0.00 2.57
4767 5044 8.812972 ACTAAGGCTATATGGTATCGAAATTCA 58.187 33.333 0.00 0.00 0.00 2.57
4774 5051 9.680315 GCTTTATACTAAGGCTATATGGTATCG 57.320 37.037 0.00 0.00 0.00 2.92
4805 5082 8.638873 CGGCCCTATATATATCAACATCTACAA 58.361 37.037 0.00 0.00 0.00 2.41
4806 5083 7.255836 GCGGCCCTATATATATCAACATCTACA 60.256 40.741 0.00 0.00 0.00 2.74
4807 5084 7.091443 GCGGCCCTATATATATCAACATCTAC 58.909 42.308 0.00 0.00 0.00 2.59
4808 5085 6.072119 CGCGGCCCTATATATATCAACATCTA 60.072 42.308 0.00 0.00 0.00 1.98
4809 5086 5.279006 CGCGGCCCTATATATATCAACATCT 60.279 44.000 0.00 0.00 0.00 2.90
4810 5087 4.923871 CGCGGCCCTATATATATCAACATC 59.076 45.833 0.00 0.00 0.00 3.06
4811 5088 4.799586 GCGCGGCCCTATATATATCAACAT 60.800 45.833 8.83 0.00 0.00 2.71
4812 5089 3.491964 GCGCGGCCCTATATATATCAACA 60.492 47.826 8.83 0.00 0.00 3.33
4813 5090 3.057734 GCGCGGCCCTATATATATCAAC 58.942 50.000 8.83 0.00 0.00 3.18
4814 5091 2.963101 AGCGCGGCCCTATATATATCAA 59.037 45.455 8.83 0.00 0.00 2.57
4815 5092 2.594131 AGCGCGGCCCTATATATATCA 58.406 47.619 8.83 0.00 0.00 2.15
4816 5093 4.985538 ATAGCGCGGCCCTATATATATC 57.014 45.455 8.83 0.00 0.00 1.63
4817 5094 4.159879 GGAATAGCGCGGCCCTATATATAT 59.840 45.833 8.83 0.00 0.00 0.86
4818 5095 3.508793 GGAATAGCGCGGCCCTATATATA 59.491 47.826 8.83 0.00 0.00 0.86
4819 5096 2.299297 GGAATAGCGCGGCCCTATATAT 59.701 50.000 8.83 0.00 0.00 0.86
4820 5097 1.684983 GGAATAGCGCGGCCCTATATA 59.315 52.381 8.83 0.00 0.00 0.86
4821 5098 0.464452 GGAATAGCGCGGCCCTATAT 59.536 55.000 8.83 0.00 0.00 0.86
4822 5099 0.613853 AGGAATAGCGCGGCCCTATA 60.614 55.000 8.83 0.00 0.00 1.31
4823 5100 1.889530 GAGGAATAGCGCGGCCCTAT 61.890 60.000 8.83 3.30 0.00 2.57
4824 5101 2.523412 AGGAATAGCGCGGCCCTA 60.523 61.111 8.83 0.46 0.00 3.53
4825 5102 3.930012 GAGGAATAGCGCGGCCCT 61.930 66.667 8.83 12.22 0.00 5.19
4826 5103 3.537206 ATGAGGAATAGCGCGGCCC 62.537 63.158 8.83 2.03 0.00 5.80
4827 5104 2.029844 GATGAGGAATAGCGCGGCC 61.030 63.158 8.83 1.82 0.00 6.13
4828 5105 2.029844 GGATGAGGAATAGCGCGGC 61.030 63.158 8.83 0.00 0.00 6.53
4829 5106 0.668706 CAGGATGAGGAATAGCGCGG 60.669 60.000 8.83 0.00 39.69 6.46
4830 5107 0.668706 CCAGGATGAGGAATAGCGCG 60.669 60.000 0.00 0.00 39.69 6.86
4831 5108 0.321122 CCCAGGATGAGGAATAGCGC 60.321 60.000 0.00 0.00 39.69 5.92
4832 5109 1.051812 ACCCAGGATGAGGAATAGCG 58.948 55.000 0.00 0.00 39.69 4.26
4833 5110 2.038295 CTCACCCAGGATGAGGAATAGC 59.962 54.545 2.13 0.00 40.01 2.97
4845 5122 5.896073 AGAATAAGTATTCCTCACCCAGG 57.104 43.478 7.32 0.00 42.29 4.45
4846 5123 6.889198 TGAAGAATAAGTATTCCTCACCCAG 58.111 40.000 7.86 0.00 42.29 4.45
4847 5124 6.884472 TGAAGAATAAGTATTCCTCACCCA 57.116 37.500 7.86 0.00 42.29 4.51
4848 5125 6.937465 GGATGAAGAATAAGTATTCCTCACCC 59.063 42.308 12.43 9.82 42.58 4.61
4849 5126 6.937465 GGGATGAAGAATAAGTATTCCTCACC 59.063 42.308 12.43 13.87 42.58 4.02
4850 5127 6.937465 GGGGATGAAGAATAAGTATTCCTCAC 59.063 42.308 12.43 8.20 42.58 3.51
4851 5128 6.851836 AGGGGATGAAGAATAAGTATTCCTCA 59.148 38.462 12.52 12.52 43.40 3.86
4852 5129 7.236640 AGAGGGGATGAAGAATAAGTATTCCTC 59.763 40.741 7.32 5.37 42.29 3.71
4853 5130 7.085601 AGAGGGGATGAAGAATAAGTATTCCT 58.914 38.462 7.32 0.00 42.29 3.36
4854 5131 7.236640 AGAGAGGGGATGAAGAATAAGTATTCC 59.763 40.741 7.32 0.00 42.29 3.01
4855 5132 8.201242 AGAGAGGGGATGAAGAATAAGTATTC 57.799 38.462 3.29 3.29 41.78 1.75
4856 5133 9.676129 TTAGAGAGGGGATGAAGAATAAGTATT 57.324 33.333 0.00 0.00 0.00 1.89
4857 5134 9.851267 ATTAGAGAGGGGATGAAGAATAAGTAT 57.149 33.333 0.00 0.00 0.00 2.12
4858 5135 9.676129 AATTAGAGAGGGGATGAAGAATAAGTA 57.324 33.333 0.00 0.00 0.00 2.24
4859 5136 8.574309 AATTAGAGAGGGGATGAAGAATAAGT 57.426 34.615 0.00 0.00 0.00 2.24
4860 5137 9.282569 CAAATTAGAGAGGGGATGAAGAATAAG 57.717 37.037 0.00 0.00 0.00 1.73
4861 5138 8.781951 ACAAATTAGAGAGGGGATGAAGAATAA 58.218 33.333 0.00 0.00 0.00 1.40
4862 5139 8.337118 ACAAATTAGAGAGGGGATGAAGAATA 57.663 34.615 0.00 0.00 0.00 1.75
4863 5140 7.092264 TGACAAATTAGAGAGGGGATGAAGAAT 60.092 37.037 0.00 0.00 0.00 2.40
4864 5141 6.215431 TGACAAATTAGAGAGGGGATGAAGAA 59.785 38.462 0.00 0.00 0.00 2.52
4865 5142 5.726308 TGACAAATTAGAGAGGGGATGAAGA 59.274 40.000 0.00 0.00 0.00 2.87
4866 5143 5.994250 TGACAAATTAGAGAGGGGATGAAG 58.006 41.667 0.00 0.00 0.00 3.02
4867 5144 6.158520 TGATGACAAATTAGAGAGGGGATGAA 59.841 38.462 0.00 0.00 0.00 2.57
4868 5145 5.667172 TGATGACAAATTAGAGAGGGGATGA 59.333 40.000 0.00 0.00 0.00 2.92
4869 5146 5.933617 TGATGACAAATTAGAGAGGGGATG 58.066 41.667 0.00 0.00 0.00 3.51
4870 5147 6.581388 TTGATGACAAATTAGAGAGGGGAT 57.419 37.500 0.00 0.00 32.73 3.85
4871 5148 6.359804 CATTGATGACAAATTAGAGAGGGGA 58.640 40.000 0.00 0.00 39.54 4.81
4872 5149 5.009410 GCATTGATGACAAATTAGAGAGGGG 59.991 44.000 0.00 0.00 39.54 4.79
4873 5150 5.591472 TGCATTGATGACAAATTAGAGAGGG 59.409 40.000 0.00 0.00 39.54 4.30
4874 5151 6.688637 TGCATTGATGACAAATTAGAGAGG 57.311 37.500 0.00 0.00 39.54 3.69
4875 5152 6.685828 CGTTGCATTGATGACAAATTAGAGAG 59.314 38.462 0.00 0.00 39.54 3.20
4876 5153 6.149308 ACGTTGCATTGATGACAAATTAGAGA 59.851 34.615 0.00 0.00 39.54 3.10
4877 5154 6.317088 ACGTTGCATTGATGACAAATTAGAG 58.683 36.000 0.00 0.00 39.54 2.43
4878 5155 6.252967 ACGTTGCATTGATGACAAATTAGA 57.747 33.333 0.00 0.00 39.54 2.10
4879 5156 8.619146 AATACGTTGCATTGATGACAAATTAG 57.381 30.769 0.00 0.00 39.54 1.73
4880 5157 8.978564 AAATACGTTGCATTGATGACAAATTA 57.021 26.923 0.00 0.00 39.54 1.40
4881 5158 7.887996 AAATACGTTGCATTGATGACAAATT 57.112 28.000 0.00 0.00 39.54 1.82
4882 5159 7.887996 AAAATACGTTGCATTGATGACAAAT 57.112 28.000 0.00 0.00 39.54 2.32
4883 5160 7.060059 CGTAAAATACGTTGCATTGATGACAAA 59.940 33.333 0.00 0.00 46.41 2.83
4884 5161 6.521477 CGTAAAATACGTTGCATTGATGACAA 59.479 34.615 0.00 0.00 46.41 3.18
4885 5162 6.018542 CGTAAAATACGTTGCATTGATGACA 58.981 36.000 0.00 0.00 46.41 3.58
4886 5163 6.462995 CGTAAAATACGTTGCATTGATGAC 57.537 37.500 0.00 0.00 46.41 3.06
4942 5219 9.286946 CGAGTACATATTTTCTTACGTTCTCTT 57.713 33.333 0.00 0.00 0.00 2.85
4943 5220 7.431668 GCGAGTACATATTTTCTTACGTTCTCT 59.568 37.037 0.00 0.00 0.00 3.10
4944 5221 7.305878 GGCGAGTACATATTTTCTTACGTTCTC 60.306 40.741 0.00 0.00 0.00 2.87
4945 5222 6.474751 GGCGAGTACATATTTTCTTACGTTCT 59.525 38.462 0.00 0.00 0.00 3.01
4946 5223 6.559158 CGGCGAGTACATATTTTCTTACGTTC 60.559 42.308 0.00 0.00 0.00 3.95
4947 5224 5.230726 CGGCGAGTACATATTTTCTTACGTT 59.769 40.000 0.00 0.00 0.00 3.99
4948 5225 4.736793 CGGCGAGTACATATTTTCTTACGT 59.263 41.667 0.00 0.00 0.00 3.57
4949 5226 4.736793 ACGGCGAGTACATATTTTCTTACG 59.263 41.667 16.62 0.00 0.00 3.18
4950 5227 7.684062 TTACGGCGAGTACATATTTTCTTAC 57.316 36.000 16.62 0.00 34.56 2.34
4951 5228 8.700722 TTTTACGGCGAGTACATATTTTCTTA 57.299 30.769 16.62 0.00 34.56 2.10
4952 5229 7.599630 TTTTACGGCGAGTACATATTTTCTT 57.400 32.000 16.62 0.00 34.56 2.52
4953 5230 7.781548 ATTTTACGGCGAGTACATATTTTCT 57.218 32.000 16.62 0.00 34.56 2.52
4954 5231 9.525007 CATATTTTACGGCGAGTACATATTTTC 57.475 33.333 16.62 0.00 34.56 2.29
4955 5232 9.048446 ACATATTTTACGGCGAGTACATATTTT 57.952 29.630 16.62 0.00 34.56 1.82
4956 5233 8.597662 ACATATTTTACGGCGAGTACATATTT 57.402 30.769 16.62 0.00 34.56 1.40
4957 5234 8.597662 AACATATTTTACGGCGAGTACATATT 57.402 30.769 16.62 0.00 34.56 1.28
4958 5235 9.132521 GTAACATATTTTACGGCGAGTACATAT 57.867 33.333 16.62 5.77 34.56 1.78
4959 5236 8.134261 TGTAACATATTTTACGGCGAGTACATA 58.866 33.333 16.62 3.46 35.09 2.29
4960 5237 6.979817 TGTAACATATTTTACGGCGAGTACAT 59.020 34.615 16.62 1.01 35.09 2.29
4961 5238 6.328714 TGTAACATATTTTACGGCGAGTACA 58.671 36.000 16.62 3.68 35.09 2.90
4962 5239 6.810888 TGTAACATATTTTACGGCGAGTAC 57.189 37.500 16.62 1.15 35.09 2.73
4963 5240 9.526713 TTTATGTAACATATTTTACGGCGAGTA 57.473 29.630 16.62 0.00 35.09 2.59
4964 5241 8.422973 TTTATGTAACATATTTTACGGCGAGT 57.577 30.769 16.62 0.00 35.09 4.18
4965 5242 9.872757 ATTTTATGTAACATATTTTACGGCGAG 57.127 29.630 16.62 0.00 35.09 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.