Multiple sequence alignment - TraesCS3A01G172300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G172300 chr3A 100.000 3234 0 0 1 3234 187246720 187249953 0.000000e+00 5973.0
1 TraesCS3A01G172300 chr3B 93.047 1697 84 13 587 2269 237331542 237333218 0.000000e+00 2449.0
2 TraesCS3A01G172300 chr3B 89.950 597 45 12 2645 3234 237333688 237334276 0.000000e+00 756.0
3 TraesCS3A01G172300 chr3B 85.542 332 20 16 2325 2636 237333218 237333541 4.020000e-84 322.0
4 TraesCS3A01G172300 chr3B 81.892 370 65 2 118 485 237330319 237330688 8.710000e-81 311.0
5 TraesCS3A01G172300 chr3D 94.363 1561 77 7 587 2139 160697882 160699439 0.000000e+00 2385.0
6 TraesCS3A01G172300 chr3D 93.808 856 32 6 2394 3234 160699786 160700635 0.000000e+00 1267.0
7 TraesCS3A01G172300 chr3D 83.229 477 69 8 11 485 160636797 160637264 8.290000e-116 427.0
8 TraesCS3A01G172300 chr3D 91.304 207 9 5 2200 2403 160699437 160699637 1.140000e-69 274.0
9 TraesCS3A01G172300 chr2D 100.000 29 0 0 1610 1638 31752428 31752456 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G172300 chr3A 187246720 187249953 3233 False 5973.000000 5973 100.000000 1 3234 1 chr3A.!!$F1 3233
1 TraesCS3A01G172300 chr3B 237330319 237334276 3957 False 959.500000 2449 87.607750 118 3234 4 chr3B.!!$F1 3116
2 TraesCS3A01G172300 chr3D 160697882 160700635 2753 False 1308.666667 2385 93.158333 587 3234 3 chr3D.!!$F2 2647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
440 441 0.037790 GCCCGCTAGAGATGGATGTC 60.038 60.000 0.00 0.0 0.00 3.06 F
511 514 0.108329 GAGGGCAAGGAATTCGTCGA 60.108 55.000 0.30 0.0 0.00 4.20 F
629 1384 0.179004 ACCTCCCAAACGCAACATGA 60.179 50.000 0.00 0.0 0.00 3.07 F
900 1655 0.388134 AAACATCAGTCGACCGACCG 60.388 55.000 17.62 9.0 45.59 4.79 F
1297 2060 1.681327 GTCCACTACGCTCCCTCCA 60.681 63.158 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1297 2060 0.247736 GTGCAGAAGTCTCCATCCGT 59.752 55.000 0.00 0.0 0.0 4.69 R
1618 2393 0.930726 GAGGAAGAGGAGGAGGAGGA 59.069 60.000 0.00 0.0 0.0 3.71 R
1619 2394 0.933700 AGAGGAAGAGGAGGAGGAGG 59.066 60.000 0.00 0.0 0.0 4.30 R
1719 2494 2.280592 GCGGCGGTGGTAATAGGG 60.281 66.667 9.78 0.0 0.0 3.53 R
2625 3593 3.568853 AGAGGTACGCGCTTTAGATATGT 59.431 43.478 5.73 0.0 0.0 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.770438 AAGAGAAGATGATGAGTTTAGTTGAC 57.230 34.615 0.00 0.00 0.00 3.18
26 27 7.901029 AGAGAAGATGATGAGTTTAGTTGACA 58.099 34.615 0.00 0.00 0.00 3.58
27 28 7.816995 AGAGAAGATGATGAGTTTAGTTGACAC 59.183 37.037 0.00 0.00 0.00 3.67
28 29 7.675062 AGAAGATGATGAGTTTAGTTGACACT 58.325 34.615 0.00 0.00 36.99 3.55
29 30 8.807118 AGAAGATGATGAGTTTAGTTGACACTA 58.193 33.333 0.00 0.00 34.06 2.74
30 31 8.994429 AAGATGATGAGTTTAGTTGACACTAG 57.006 34.615 0.00 0.00 36.81 2.57
31 32 7.038659 AGATGATGAGTTTAGTTGACACTAGC 58.961 38.462 0.00 0.00 36.81 3.42
32 33 5.479306 TGATGAGTTTAGTTGACACTAGCC 58.521 41.667 0.00 0.00 36.81 3.93
33 34 4.267349 TGAGTTTAGTTGACACTAGCCC 57.733 45.455 0.00 0.00 36.81 5.19
34 35 3.251571 GAGTTTAGTTGACACTAGCCCG 58.748 50.000 0.00 0.00 36.81 6.13
35 36 2.028385 AGTTTAGTTGACACTAGCCCGG 60.028 50.000 0.00 0.00 36.81 5.73
36 37 0.248289 TTAGTTGACACTAGCCCGGC 59.752 55.000 0.00 0.00 36.81 6.13
37 38 1.610554 TAGTTGACACTAGCCCGGCC 61.611 60.000 5.55 0.00 34.06 6.13
38 39 3.712907 TTGACACTAGCCCGGCCC 61.713 66.667 5.55 0.00 0.00 5.80
39 40 4.715130 TGACACTAGCCCGGCCCT 62.715 66.667 5.55 0.00 0.00 5.19
40 41 3.851128 GACACTAGCCCGGCCCTC 61.851 72.222 5.55 0.00 0.00 4.30
44 45 3.782443 CTAGCCCGGCCCTCGTTT 61.782 66.667 5.55 0.00 37.11 3.60
45 46 3.324108 TAGCCCGGCCCTCGTTTT 61.324 61.111 5.55 0.00 37.11 2.43
46 47 3.615509 TAGCCCGGCCCTCGTTTTG 62.616 63.158 5.55 0.00 37.11 2.44
49 50 3.061848 CCGGCCCTCGTTTTGCAT 61.062 61.111 0.00 0.00 37.11 3.96
50 51 2.635443 CCGGCCCTCGTTTTGCATT 61.635 57.895 0.00 0.00 37.11 3.56
51 52 1.288752 CGGCCCTCGTTTTGCATTT 59.711 52.632 0.00 0.00 0.00 2.32
52 53 1.008361 CGGCCCTCGTTTTGCATTTG 61.008 55.000 0.00 0.00 0.00 2.32
53 54 0.316841 GGCCCTCGTTTTGCATTTGA 59.683 50.000 0.00 0.00 0.00 2.69
54 55 1.270041 GGCCCTCGTTTTGCATTTGAA 60.270 47.619 0.00 0.00 0.00 2.69
55 56 2.612721 GGCCCTCGTTTTGCATTTGAAT 60.613 45.455 0.00 0.00 0.00 2.57
56 57 3.367910 GGCCCTCGTTTTGCATTTGAATA 60.368 43.478 0.00 0.00 0.00 1.75
57 58 4.432712 GCCCTCGTTTTGCATTTGAATAT 58.567 39.130 0.00 0.00 0.00 1.28
58 59 5.451242 GGCCCTCGTTTTGCATTTGAATATA 60.451 40.000 0.00 0.00 0.00 0.86
59 60 6.215845 GCCCTCGTTTTGCATTTGAATATAT 58.784 36.000 0.00 0.00 0.00 0.86
60 61 6.144402 GCCCTCGTTTTGCATTTGAATATATG 59.856 38.462 0.00 0.00 0.00 1.78
61 62 7.424803 CCCTCGTTTTGCATTTGAATATATGA 58.575 34.615 0.00 0.00 0.00 2.15
62 63 7.592533 CCCTCGTTTTGCATTTGAATATATGAG 59.407 37.037 0.00 0.00 0.00 2.90
63 64 8.131100 CCTCGTTTTGCATTTGAATATATGAGT 58.869 33.333 0.00 0.00 0.00 3.41
64 65 9.507280 CTCGTTTTGCATTTGAATATATGAGTT 57.493 29.630 0.00 0.00 0.00 3.01
65 66 9.853555 TCGTTTTGCATTTGAATATATGAGTTT 57.146 25.926 0.00 0.00 0.00 2.66
75 76 9.958180 TTTGAATATATGAGTTTTCAGTCTGGA 57.042 29.630 0.00 0.00 36.61 3.86
95 96 9.899226 GTCTGGATTAAGATATTACCATTTTGC 57.101 33.333 0.00 0.00 0.00 3.68
96 97 8.783093 TCTGGATTAAGATATTACCATTTTGCG 58.217 33.333 0.00 0.00 0.00 4.85
97 98 8.684386 TGGATTAAGATATTACCATTTTGCGA 57.316 30.769 0.00 0.00 0.00 5.10
98 99 9.126151 TGGATTAAGATATTACCATTTTGCGAA 57.874 29.630 0.00 0.00 0.00 4.70
99 100 9.959749 GGATTAAGATATTACCATTTTGCGAAA 57.040 29.630 0.53 0.53 0.00 3.46
143 144 9.982291 CATATAAGTGTAACAATGGTTGTACAC 57.018 33.333 10.02 10.02 44.59 2.90
145 146 6.371809 AAGTGTAACAATGGTTGTACACAG 57.628 37.500 17.45 0.00 44.59 3.66
153 154 6.240894 ACAATGGTTGTACACAGATTCTCAT 58.759 36.000 0.00 0.00 43.27 2.90
154 155 6.716628 ACAATGGTTGTACACAGATTCTCATT 59.283 34.615 0.00 0.00 43.27 2.57
196 197 3.633065 AGGTTCTTAGACCATCTAGCGAC 59.367 47.826 0.00 0.00 42.35 5.19
199 200 2.871022 TCTTAGACCATCTAGCGACGAC 59.129 50.000 0.00 0.00 29.56 4.34
201 202 1.752683 AGACCATCTAGCGACGACTT 58.247 50.000 0.00 0.00 0.00 3.01
202 203 1.671845 AGACCATCTAGCGACGACTTC 59.328 52.381 0.00 0.00 0.00 3.01
210 211 1.010935 AGCGACGACTTCATGCAGTG 61.011 55.000 1.66 0.00 0.00 3.66
228 229 0.465705 TGGGATGATCTGAAGGCGTC 59.534 55.000 0.00 0.00 0.00 5.19
229 230 0.465705 GGGATGATCTGAAGGCGTCA 59.534 55.000 2.52 2.52 34.17 4.35
230 231 1.071385 GGGATGATCTGAAGGCGTCAT 59.929 52.381 3.00 0.00 35.07 3.06
233 234 0.817654 TGATCTGAAGGCGTCATCGT 59.182 50.000 3.00 0.00 39.49 3.73
239 240 1.136891 TGAAGGCGTCATCGTCATCAT 59.863 47.619 0.00 0.00 42.76 2.45
244 245 1.539065 GCGTCATCGTCATCATCCCTT 60.539 52.381 0.00 0.00 39.49 3.95
246 247 2.035193 CGTCATCGTCATCATCCCTTCT 59.965 50.000 0.00 0.00 0.00 2.85
251 252 6.367422 GTCATCGTCATCATCCCTTCTTTATC 59.633 42.308 0.00 0.00 0.00 1.75
252 253 5.869649 TCGTCATCATCCCTTCTTTATCA 57.130 39.130 0.00 0.00 0.00 2.15
253 254 6.233905 TCGTCATCATCCCTTCTTTATCAA 57.766 37.500 0.00 0.00 0.00 2.57
256 257 6.512415 CGTCATCATCCCTTCTTTATCAAAGC 60.512 42.308 0.00 0.00 38.39 3.51
275 276 2.621055 AGCCGTGCAATCTTTGTTGTAA 59.379 40.909 0.00 0.00 0.00 2.41
278 279 5.048364 AGCCGTGCAATCTTTGTTGTAATAA 60.048 36.000 0.00 0.00 0.00 1.40
323 324 5.622770 AAAATCTTAAAGAACCGACGCAT 57.377 34.783 0.00 0.00 0.00 4.73
328 329 5.472148 TCTTAAAGAACCGACGCATAAGAA 58.528 37.500 0.00 0.00 0.00 2.52
341 342 2.034179 GCATAAGAACATTAACCGCCCC 59.966 50.000 0.00 0.00 0.00 5.80
345 346 1.092348 GAACATTAACCGCCCCTGAC 58.908 55.000 0.00 0.00 0.00 3.51
358 359 1.579698 CCCTGACGATGAGAAGCATG 58.420 55.000 0.00 0.00 37.34 4.06
367 368 3.819337 CGATGAGAAGCATGGATTGGAAT 59.181 43.478 0.00 0.00 37.34 3.01
404 405 3.517500 ACACACCAATGAAAACAAGGGTT 59.482 39.130 0.00 0.00 39.43 4.11
405 406 4.712337 ACACACCAATGAAAACAAGGGTTA 59.288 37.500 0.00 0.00 35.82 2.85
406 407 5.163457 ACACACCAATGAAAACAAGGGTTAG 60.163 40.000 0.00 0.00 35.82 2.34
409 410 3.574614 CAATGAAAACAAGGGTTAGCCG 58.425 45.455 0.00 0.00 35.82 5.52
411 412 2.933573 TGAAAACAAGGGTTAGCCGAA 58.066 42.857 0.00 0.00 35.82 4.30
417 418 0.546598 AAGGGTTAGCCGAATCCAGG 59.453 55.000 1.32 0.00 41.38 4.45
435 436 2.739784 CAGGCCCGCTAGAGATGG 59.260 66.667 0.00 0.00 0.00 3.51
440 441 0.037790 GCCCGCTAGAGATGGATGTC 60.038 60.000 0.00 0.00 0.00 3.06
441 442 1.332195 CCCGCTAGAGATGGATGTCA 58.668 55.000 0.00 0.00 0.00 3.58
459 462 3.054434 TGTCAATCGGACCCATGAAGATT 60.054 43.478 0.00 0.00 46.38 2.40
462 465 2.691409 TCGGACCCATGAAGATTCAC 57.309 50.000 0.00 0.00 40.49 3.18
463 466 2.187958 TCGGACCCATGAAGATTCACT 58.812 47.619 0.00 0.00 40.49 3.41
485 488 1.448540 GACCAGCACTGACCGGATG 60.449 63.158 9.46 1.40 0.00 3.51
486 489 1.888436 GACCAGCACTGACCGGATGA 61.888 60.000 9.46 0.00 0.00 2.92
487 490 1.267574 ACCAGCACTGACCGGATGAT 61.268 55.000 9.46 0.00 0.00 2.45
488 491 0.531532 CCAGCACTGACCGGATGATC 60.532 60.000 9.46 0.00 0.00 2.92
490 493 2.240500 GCACTGACCGGATGATCGC 61.241 63.158 9.46 0.00 0.00 4.58
491 494 1.946156 CACTGACCGGATGATCGCG 60.946 63.158 9.46 0.00 0.00 5.87
494 497 2.049985 GACCGGATGATCGCGGAG 60.050 66.667 22.93 4.42 35.28 4.63
495 498 3.559657 GACCGGATGATCGCGGAGG 62.560 68.421 22.93 8.19 35.28 4.30
496 499 4.363990 CCGGATGATCGCGGAGGG 62.364 72.222 14.54 0.00 44.04 4.30
498 501 3.928779 GGATGATCGCGGAGGGCA 61.929 66.667 6.13 0.00 43.84 5.36
499 502 2.108976 GATGATCGCGGAGGGCAA 59.891 61.111 6.13 0.00 43.84 4.52
501 504 3.466791 ATGATCGCGGAGGGCAAGG 62.467 63.158 6.13 0.00 43.84 3.61
502 505 3.849951 GATCGCGGAGGGCAAGGA 61.850 66.667 6.13 0.00 43.84 3.36
503 506 3.385749 GATCGCGGAGGGCAAGGAA 62.386 63.158 6.13 0.00 43.84 3.36
504 507 2.666596 GATCGCGGAGGGCAAGGAAT 62.667 60.000 6.13 0.00 43.84 3.01
505 508 2.270874 ATCGCGGAGGGCAAGGAATT 62.271 55.000 6.13 0.00 43.84 2.17
506 509 2.472909 CGCGGAGGGCAAGGAATTC 61.473 63.158 0.00 0.00 43.84 2.17
507 510 2.472909 GCGGAGGGCAAGGAATTCG 61.473 63.158 0.00 0.00 42.87 3.34
508 511 1.078426 CGGAGGGCAAGGAATTCGT 60.078 57.895 0.00 0.00 0.00 3.85
510 513 1.090052 GGAGGGCAAGGAATTCGTCG 61.090 60.000 0.30 0.00 0.00 5.12
511 514 0.108329 GAGGGCAAGGAATTCGTCGA 60.108 55.000 0.30 0.00 0.00 4.20
512 515 0.323629 AGGGCAAGGAATTCGTCGAA 59.676 50.000 10.61 10.61 0.00 3.71
513 516 1.065418 AGGGCAAGGAATTCGTCGAAT 60.065 47.619 14.69 14.69 33.25 3.34
514 517 1.743394 GGGCAAGGAATTCGTCGAATT 59.257 47.619 28.49 28.49 43.77 2.17
522 525 1.849097 ATTCGTCGAATTCTACCGCC 58.151 50.000 14.69 0.00 0.00 6.13
523 526 0.523968 TTCGTCGAATTCTACCGCCG 60.524 55.000 2.90 0.00 0.00 6.46
524 527 1.063006 CGTCGAATTCTACCGCCGA 59.937 57.895 3.52 0.00 28.05 5.54
525 528 0.928908 CGTCGAATTCTACCGCCGAG 60.929 60.000 3.52 0.00 28.05 4.63
526 529 0.379669 GTCGAATTCTACCGCCGAGA 59.620 55.000 3.52 0.00 0.00 4.04
527 530 0.661552 TCGAATTCTACCGCCGAGAG 59.338 55.000 3.52 0.00 0.00 3.20
528 531 0.381089 CGAATTCTACCGCCGAGAGT 59.619 55.000 3.52 0.00 0.00 3.24
531 1230 1.765230 ATTCTACCGCCGAGAGTTCT 58.235 50.000 0.00 0.00 0.00 3.01
545 1244 2.304180 AGAGTTCTTGTGGTCATGGGAG 59.696 50.000 0.00 0.00 0.00 4.30
552 1251 1.985614 TGGTCATGGGAGAGCACTG 59.014 57.895 0.00 0.00 40.73 3.66
582 1281 9.146984 CATATTTTTCATGCTTTGCCTATATGG 57.853 33.333 0.00 0.00 39.35 2.74
619 1374 4.769345 AATTCTTTGCAAACCTCCCAAA 57.231 36.364 8.05 0.00 0.00 3.28
629 1384 0.179004 ACCTCCCAAACGCAACATGA 60.179 50.000 0.00 0.00 0.00 3.07
633 1388 0.950836 CCCAAACGCAACATGACTCA 59.049 50.000 0.00 0.00 0.00 3.41
649 1404 4.702831 TGACTCATGTTGTAAAGCACTCA 58.297 39.130 0.00 0.00 0.00 3.41
652 1407 5.308014 ACTCATGTTGTAAAGCACTCATCA 58.692 37.500 0.00 0.00 0.00 3.07
676 1431 2.642139 AATCTTTGAGCGCAACATGG 57.358 45.000 11.47 5.69 32.79 3.66
695 1450 2.092049 TGGCTCATGATGCAAATCTCCT 60.092 45.455 15.83 0.00 0.00 3.69
698 1453 4.215827 GGCTCATGATGCAAATCTCCTAAG 59.784 45.833 15.83 0.00 0.00 2.18
780 1535 3.068064 TGGATCAGACCGAGCGCA 61.068 61.111 11.47 0.00 0.00 6.09
796 1551 3.564511 AGCGCAAACATAACATGTGTTC 58.435 40.909 11.47 0.00 44.07 3.18
810 1565 1.403679 TGTGTTCCAAACCTTCAAGCG 59.596 47.619 0.00 0.00 0.00 4.68
830 1585 2.347452 CGTAACATGGTTACAAGCCTCG 59.653 50.000 16.71 0.85 0.00 4.63
859 1614 1.153369 ACGATGGATCCAACGGCTG 60.153 57.895 37.53 18.17 44.57 4.85
879 1634 2.016961 CGCCCCAGTCGATCATTTG 58.983 57.895 0.00 0.00 0.00 2.32
899 1654 1.725164 GAAAACATCAGTCGACCGACC 59.275 52.381 17.62 2.06 45.59 4.79
900 1655 0.388134 AAACATCAGTCGACCGACCG 60.388 55.000 17.62 9.00 45.59 4.79
1009 1772 4.227134 CTGCCCCTCCACGATCGG 62.227 72.222 20.98 8.32 0.00 4.18
1297 2060 1.681327 GTCCACTACGCTCCCTCCA 60.681 63.158 0.00 0.00 0.00 3.86
1419 2182 2.280186 CTGTTCCTATCCGGCCGC 60.280 66.667 22.85 3.47 0.00 6.53
1491 2263 2.606519 CAGGGGGAGGACGGTGAA 60.607 66.667 0.00 0.00 0.00 3.18
1492 2264 2.284699 AGGGGGAGGACGGTGAAG 60.285 66.667 0.00 0.00 0.00 3.02
1493 2265 2.284405 GGGGGAGGACGGTGAAGA 60.284 66.667 0.00 0.00 0.00 2.87
1494 2266 2.657066 GGGGGAGGACGGTGAAGAC 61.657 68.421 0.00 0.00 0.00 3.01
1495 2267 2.572284 GGGAGGACGGTGAAGACG 59.428 66.667 0.00 0.00 37.36 4.18
1496 2268 1.975407 GGGAGGACGGTGAAGACGA 60.975 63.158 0.00 0.00 34.93 4.20
1617 2392 2.504026 GCATCAGCGTCGTCGTCA 60.504 61.111 3.66 0.00 39.49 4.35
1618 2393 1.874019 GCATCAGCGTCGTCGTCAT 60.874 57.895 3.66 0.00 39.49 3.06
1619 2394 1.802300 GCATCAGCGTCGTCGTCATC 61.802 60.000 3.66 0.00 39.49 2.92
1799 2574 1.311651 GCCAAGAAAGCTCTGCCCTC 61.312 60.000 0.00 0.00 30.03 4.30
2016 2794 3.716006 CACGTCTGGCAAGTGGCG 61.716 66.667 8.87 3.91 46.16 5.69
2037 2815 3.495100 CGAGGCATAGTTTCAGGGCTTAT 60.495 47.826 0.00 0.00 36.18 1.73
2141 2919 1.138247 CAGCCGGCTCAATCTTTGC 59.862 57.895 30.29 0.00 0.00 3.68
2148 2926 2.938451 CGGCTCAATCTTTGCTATGTGA 59.062 45.455 0.00 0.00 0.00 3.58
2156 2934 5.690464 ATCTTTGCTATGTGAGAGTCCTT 57.310 39.130 0.00 0.00 0.00 3.36
2277 3065 2.978489 GTGTTTCGTGTTACTCTCTCCG 59.022 50.000 0.00 0.00 0.00 4.63
2358 3149 3.517901 TCTTACTCCATCCGTCCAAATGT 59.482 43.478 0.00 0.00 0.00 2.71
2370 3161 4.928615 CCGTCCAAATGTAATGTGCATTTT 59.071 37.500 2.56 0.00 42.54 1.82
2371 3162 5.062058 CCGTCCAAATGTAATGTGCATTTTC 59.938 40.000 2.56 0.00 42.54 2.29
2372 3163 5.062058 CGTCCAAATGTAATGTGCATTTTCC 59.938 40.000 2.56 0.00 42.54 3.13
2373 3164 5.351189 GTCCAAATGTAATGTGCATTTTCCC 59.649 40.000 2.56 0.00 42.54 3.97
2391 3182 9.750125 CATTTTCCCTATTTGTTATAAAGGCTC 57.250 33.333 0.00 0.00 0.00 4.70
2414 3364 4.825422 TGACAAACAATCCTGCAAACAAA 58.175 34.783 0.00 0.00 0.00 2.83
2605 3572 5.273944 GTTACTGAGGTCAGCAACAAAAAG 58.726 41.667 15.39 0.00 45.18 2.27
2624 3592 8.661345 ACAAAAAGATAGAAGAAGGGAGTTACT 58.339 33.333 0.00 0.00 0.00 2.24
2694 3801 4.576053 CACACCATCAAGAGAAGTGACAAA 59.424 41.667 0.00 0.00 36.27 2.83
2699 3806 2.807967 TCAAGAGAAGTGACAAATGGCG 59.192 45.455 0.00 0.00 0.00 5.69
2750 3858 4.432712 GAAAACCAAATGGCGATGCTATT 58.567 39.130 0.00 0.00 41.30 1.73
2898 4008 5.248477 TCCATAAGTAGTTCCACAAAGAGCT 59.752 40.000 0.00 0.00 0.00 4.09
2906 4016 4.112634 GTTCCACAAAGAGCTGGTTTTTC 58.887 43.478 0.00 0.00 0.00 2.29
2966 4076 5.067954 CCTAGTGCAATCATGATCCATTGA 58.932 41.667 9.06 3.65 32.56 2.57
2977 4087 5.900699 TCATGATCCATTGAATCCATGGTTT 59.099 36.000 12.58 10.04 36.83 3.27
2982 4092 5.825532 TCCATTGAATCCATGGTTTCAGTA 58.174 37.500 28.50 19.93 35.89 2.74
2986 4096 4.331968 TGAATCCATGGTTTCAGTACACC 58.668 43.478 27.25 6.84 32.24 4.16
3092 4204 6.328714 GGGCTTCTTGATCAATTTTTCTCTC 58.671 40.000 8.96 0.00 0.00 3.20
3115 4227 6.916440 TCAGTTCAAAGGAATGATTCACATG 58.084 36.000 7.56 2.69 39.39 3.21
3129 4241 9.809096 AATGATTCACATGTAGTCTAGTTAGTG 57.191 33.333 0.00 0.00 39.39 2.74
3220 4332 5.469084 GGAACGGTGAAAAGTACTCAAGAAT 59.531 40.000 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.370940 TGTCAACTAAACTCATCATCTTCTCTT 58.629 33.333 0.00 0.00 0.00 2.85
1 2 7.816995 GTGTCAACTAAACTCATCATCTTCTCT 59.183 37.037 0.00 0.00 0.00 3.10
2 3 7.816995 AGTGTCAACTAAACTCATCATCTTCTC 59.183 37.037 0.00 0.00 33.79 2.87
3 4 7.675062 AGTGTCAACTAAACTCATCATCTTCT 58.325 34.615 0.00 0.00 33.79 2.85
4 5 7.897575 AGTGTCAACTAAACTCATCATCTTC 57.102 36.000 0.00 0.00 33.79 2.87
5 6 7.547370 GCTAGTGTCAACTAAACTCATCATCTT 59.453 37.037 0.00 0.00 38.43 2.40
6 7 7.038659 GCTAGTGTCAACTAAACTCATCATCT 58.961 38.462 0.00 0.00 38.43 2.90
7 8 6.256757 GGCTAGTGTCAACTAAACTCATCATC 59.743 42.308 0.00 0.00 38.43 2.92
8 9 6.109359 GGCTAGTGTCAACTAAACTCATCAT 58.891 40.000 0.00 0.00 38.43 2.45
9 10 5.479306 GGCTAGTGTCAACTAAACTCATCA 58.521 41.667 0.00 0.00 38.43 3.07
10 11 4.870991 GGGCTAGTGTCAACTAAACTCATC 59.129 45.833 0.00 0.00 38.43 2.92
11 12 4.620803 CGGGCTAGTGTCAACTAAACTCAT 60.621 45.833 0.00 0.00 38.43 2.90
12 13 3.305813 CGGGCTAGTGTCAACTAAACTCA 60.306 47.826 0.00 0.00 38.43 3.41
13 14 3.251571 CGGGCTAGTGTCAACTAAACTC 58.748 50.000 0.00 0.00 38.43 3.01
14 15 2.028385 CCGGGCTAGTGTCAACTAAACT 60.028 50.000 0.00 0.00 38.43 2.66
15 16 2.344025 CCGGGCTAGTGTCAACTAAAC 58.656 52.381 0.00 0.00 38.43 2.01
16 17 1.338389 GCCGGGCTAGTGTCAACTAAA 60.338 52.381 12.87 0.00 38.43 1.85
17 18 0.248289 GCCGGGCTAGTGTCAACTAA 59.752 55.000 12.87 0.00 38.43 2.24
18 19 1.610554 GGCCGGGCTAGTGTCAACTA 61.611 60.000 22.87 0.00 37.88 2.24
19 20 2.663196 GCCGGGCTAGTGTCAACT 59.337 61.111 12.87 0.00 40.67 3.16
20 21 2.436115 GGCCGGGCTAGTGTCAAC 60.436 66.667 22.87 0.00 0.00 3.18
21 22 3.712907 GGGCCGGGCTAGTGTCAA 61.713 66.667 28.80 0.00 0.00 3.18
22 23 4.715130 AGGGCCGGGCTAGTGTCA 62.715 66.667 28.80 0.00 0.00 3.58
23 24 3.851128 GAGGGCCGGGCTAGTGTC 61.851 72.222 28.80 9.96 0.00 3.67
27 28 3.325201 AAAACGAGGGCCGGGCTAG 62.325 63.158 28.80 20.36 43.93 3.42
28 29 3.324108 AAAACGAGGGCCGGGCTA 61.324 61.111 28.80 0.00 43.93 3.93
32 33 2.153547 AAATGCAAAACGAGGGCCGG 62.154 55.000 0.00 0.00 43.93 6.13
33 34 1.008361 CAAATGCAAAACGAGGGCCG 61.008 55.000 0.00 0.00 45.44 6.13
34 35 0.316841 TCAAATGCAAAACGAGGGCC 59.683 50.000 0.00 0.00 0.00 5.80
35 36 2.147436 TTCAAATGCAAAACGAGGGC 57.853 45.000 0.00 0.00 0.00 5.19
36 37 7.424803 TCATATATTCAAATGCAAAACGAGGG 58.575 34.615 0.00 0.00 0.00 4.30
37 38 8.131100 ACTCATATATTCAAATGCAAAACGAGG 58.869 33.333 0.00 0.00 0.00 4.63
38 39 9.507280 AACTCATATATTCAAATGCAAAACGAG 57.493 29.630 0.00 0.00 0.00 4.18
39 40 9.853555 AAACTCATATATTCAAATGCAAAACGA 57.146 25.926 0.00 0.00 0.00 3.85
49 50 9.958180 TCCAGACTGAAAACTCATATATTCAAA 57.042 29.630 3.32 0.00 31.94 2.69
69 70 9.899226 GCAAAATGGTAATATCTTAATCCAGAC 57.101 33.333 0.00 0.00 0.00 3.51
70 71 8.783093 CGCAAAATGGTAATATCTTAATCCAGA 58.217 33.333 0.00 0.00 0.00 3.86
71 72 8.783093 TCGCAAAATGGTAATATCTTAATCCAG 58.217 33.333 0.00 0.00 0.00 3.86
72 73 8.684386 TCGCAAAATGGTAATATCTTAATCCA 57.316 30.769 0.00 0.00 0.00 3.41
73 74 9.959749 TTTCGCAAAATGGTAATATCTTAATCC 57.040 29.630 0.00 0.00 0.00 3.01
116 117 9.945904 TGTACAACCATTGTTACACTTATATGA 57.054 29.630 0.00 0.00 42.22 2.15
121 122 7.273712 TCTGTGTACAACCATTGTTACACTTA 58.726 34.615 21.39 13.65 42.22 2.24
131 132 6.151648 CCAATGAGAATCTGTGTACAACCATT 59.848 38.462 0.00 0.00 34.92 3.16
137 138 6.764379 TGTTACCAATGAGAATCTGTGTACA 58.236 36.000 0.00 0.00 34.92 2.90
139 140 8.684386 TTTTGTTACCAATGAGAATCTGTGTA 57.316 30.769 0.00 0.00 34.92 2.90
154 155 9.411189 AGAACCTAGTTGTAATTTTTGTTACCA 57.589 29.630 0.00 0.00 34.43 3.25
178 179 2.871022 GTCGTCGCTAGATGGTCTAAGA 59.129 50.000 0.00 0.00 34.23 2.10
182 183 1.671845 GAAGTCGTCGCTAGATGGTCT 59.328 52.381 0.00 0.00 34.23 3.85
188 189 0.808755 TGCATGAAGTCGTCGCTAGA 59.191 50.000 0.00 0.00 0.00 2.43
196 197 1.012086 CATCCCACTGCATGAAGTCG 58.988 55.000 2.28 0.00 0.00 4.18
199 200 2.879026 CAGATCATCCCACTGCATGAAG 59.121 50.000 0.00 0.00 32.76 3.02
201 202 2.121129 TCAGATCATCCCACTGCATGA 58.879 47.619 0.00 0.00 33.55 3.07
202 203 2.632987 TCAGATCATCCCACTGCATG 57.367 50.000 0.00 0.00 0.00 4.06
210 211 0.465705 TGACGCCTTCAGATCATCCC 59.534 55.000 0.00 0.00 0.00 3.85
228 229 6.226052 TGATAAAGAAGGGATGATGACGATG 58.774 40.000 0.00 0.00 0.00 3.84
229 230 6.425210 TGATAAAGAAGGGATGATGACGAT 57.575 37.500 0.00 0.00 0.00 3.73
230 231 5.869649 TGATAAAGAAGGGATGATGACGA 57.130 39.130 0.00 0.00 0.00 4.20
233 234 5.829924 GGCTTTGATAAAGAAGGGATGATGA 59.170 40.000 5.54 0.00 41.02 2.92
239 240 3.343617 CACGGCTTTGATAAAGAAGGGA 58.656 45.455 5.54 0.00 41.02 4.20
244 245 4.009675 AGATTGCACGGCTTTGATAAAGA 58.990 39.130 5.54 0.00 41.02 2.52
246 247 4.782019 AAGATTGCACGGCTTTGATAAA 57.218 36.364 0.00 0.00 0.00 1.40
252 253 2.159114 ACAACAAAGATTGCACGGCTTT 60.159 40.909 0.00 0.00 32.47 3.51
253 254 1.408702 ACAACAAAGATTGCACGGCTT 59.591 42.857 0.00 0.00 32.47 4.35
256 257 6.638873 TGTTTATTACAACAAAGATTGCACGG 59.361 34.615 0.00 0.00 33.60 4.94
293 294 9.673454 GTCGGTTCTTTAAGATTTTAACACAAT 57.327 29.630 0.00 0.00 0.00 2.71
298 299 6.365050 TGCGTCGGTTCTTTAAGATTTTAAC 58.635 36.000 0.00 0.00 0.00 2.01
302 303 6.592607 TCTTATGCGTCGGTTCTTTAAGATTT 59.407 34.615 0.00 0.00 0.00 2.17
305 306 5.063180 TCTTATGCGTCGGTTCTTTAAGA 57.937 39.130 0.00 0.00 0.00 2.10
308 309 4.558178 TGTTCTTATGCGTCGGTTCTTTA 58.442 39.130 0.00 0.00 0.00 1.85
317 318 3.545426 GGCGGTTAATGTTCTTATGCGTC 60.545 47.826 0.00 0.00 0.00 5.19
323 324 2.572556 TCAGGGGCGGTTAATGTTCTTA 59.427 45.455 0.00 0.00 0.00 2.10
328 329 1.078708 CGTCAGGGGCGGTTAATGT 60.079 57.895 0.00 0.00 0.00 2.71
341 342 2.591571 TCCATGCTTCTCATCGTCAG 57.408 50.000 0.00 0.00 31.79 3.51
345 346 2.842457 TCCAATCCATGCTTCTCATCG 58.158 47.619 0.00 0.00 31.79 3.84
367 368 2.817258 GGTGTGTTTGCAAGTATGGCTA 59.183 45.455 0.00 0.00 34.64 3.93
417 418 2.030262 CATCTCTAGCGGGCCTGC 59.970 66.667 30.15 30.15 0.00 4.85
421 422 0.037790 GACATCCATCTCTAGCGGGC 60.038 60.000 0.00 0.00 0.00 6.13
422 423 1.332195 TGACATCCATCTCTAGCGGG 58.668 55.000 0.00 0.00 0.00 6.13
425 426 3.256879 TCCGATTGACATCCATCTCTAGC 59.743 47.826 0.00 0.00 0.00 3.42
428 429 2.366916 GGTCCGATTGACATCCATCTCT 59.633 50.000 0.00 0.00 46.38 3.10
435 436 2.620251 TCATGGGTCCGATTGACATC 57.380 50.000 0.00 0.00 46.38 3.06
440 441 3.313526 GTGAATCTTCATGGGTCCGATTG 59.686 47.826 0.00 0.00 39.73 2.67
441 442 3.200825 AGTGAATCTTCATGGGTCCGATT 59.799 43.478 0.00 0.00 39.73 3.34
448 449 1.565759 TCCCCAGTGAATCTTCATGGG 59.434 52.381 21.44 21.44 45.49 4.00
463 466 3.249189 GGTCAGTGCTGGTCCCCA 61.249 66.667 0.00 0.00 0.00 4.96
466 469 2.660064 ATCCGGTCAGTGCTGGTCC 61.660 63.158 0.00 2.57 36.33 4.46
476 479 2.831284 TCCGCGATCATCCGGTCA 60.831 61.111 8.23 0.00 44.63 4.02
477 480 2.049985 CTCCGCGATCATCCGGTC 60.050 66.667 8.23 0.00 44.63 4.79
485 488 2.666596 ATTCCTTGCCCTCCGCGATC 62.667 60.000 8.23 0.00 42.08 3.69
486 489 2.270874 AATTCCTTGCCCTCCGCGAT 62.271 55.000 8.23 0.00 42.08 4.58
487 490 2.869503 GAATTCCTTGCCCTCCGCGA 62.870 60.000 8.23 0.00 42.08 5.87
488 491 2.438434 AATTCCTTGCCCTCCGCG 60.438 61.111 0.00 0.00 42.08 6.46
490 493 1.078426 ACGAATTCCTTGCCCTCCG 60.078 57.895 0.00 0.00 0.00 4.63
491 494 1.090052 CGACGAATTCCTTGCCCTCC 61.090 60.000 0.00 0.00 0.00 4.30
494 497 1.379527 ATTCGACGAATTCCTTGCCC 58.620 50.000 17.19 0.00 0.00 5.36
495 498 3.052940 GAATTCGACGAATTCCTTGCC 57.947 47.619 36.59 20.99 46.95 4.52
502 505 2.199236 GGCGGTAGAATTCGACGAATT 58.801 47.619 30.43 30.43 43.77 2.17
503 506 1.849097 GGCGGTAGAATTCGACGAAT 58.151 50.000 17.19 17.19 33.25 3.34
504 507 3.334078 GGCGGTAGAATTCGACGAA 57.666 52.632 13.48 13.48 0.00 3.85
507 510 0.379669 TCTCGGCGGTAGAATTCGAC 59.620 55.000 7.21 9.98 0.00 4.20
508 511 0.661552 CTCTCGGCGGTAGAATTCGA 59.338 55.000 7.21 0.00 0.00 3.71
510 513 2.099427 AGAACTCTCGGCGGTAGAATTC 59.901 50.000 7.21 9.36 31.10 2.17
511 514 2.100989 AGAACTCTCGGCGGTAGAATT 58.899 47.619 7.21 0.00 0.00 2.17
512 515 1.765230 AGAACTCTCGGCGGTAGAAT 58.235 50.000 7.21 0.00 0.00 2.40
513 516 1.201647 CAAGAACTCTCGGCGGTAGAA 59.798 52.381 7.21 0.00 0.00 2.10
514 517 0.809385 CAAGAACTCTCGGCGGTAGA 59.191 55.000 7.21 2.00 0.00 2.59
516 519 0.242825 CACAAGAACTCTCGGCGGTA 59.757 55.000 7.21 0.00 0.00 4.02
517 520 1.006102 CACAAGAACTCTCGGCGGT 60.006 57.895 7.21 0.00 0.00 5.68
518 521 1.738099 CCACAAGAACTCTCGGCGG 60.738 63.158 7.21 0.00 0.00 6.13
519 522 1.006102 ACCACAAGAACTCTCGGCG 60.006 57.895 0.00 0.00 0.00 6.46
520 523 0.033504 TGACCACAAGAACTCTCGGC 59.966 55.000 0.00 0.00 0.00 5.54
522 525 2.341257 CCATGACCACAAGAACTCTCG 58.659 52.381 0.00 0.00 0.00 4.04
523 526 2.303022 TCCCATGACCACAAGAACTCTC 59.697 50.000 0.00 0.00 0.00 3.20
524 527 2.304180 CTCCCATGACCACAAGAACTCT 59.696 50.000 0.00 0.00 0.00 3.24
525 528 2.303022 TCTCCCATGACCACAAGAACTC 59.697 50.000 0.00 0.00 0.00 3.01
526 529 2.304180 CTCTCCCATGACCACAAGAACT 59.696 50.000 0.00 0.00 0.00 3.01
527 530 2.704572 CTCTCCCATGACCACAAGAAC 58.295 52.381 0.00 0.00 0.00 3.01
528 531 1.003580 GCTCTCCCATGACCACAAGAA 59.996 52.381 0.00 0.00 0.00 2.52
531 1230 0.036732 GTGCTCTCCCATGACCACAA 59.963 55.000 0.00 0.00 0.00 3.33
582 1281 7.970061 TGCAAAGAATTAATATGTGAGTGAAGC 59.030 33.333 0.00 0.00 0.00 3.86
583 1282 9.844790 TTGCAAAGAATTAATATGTGAGTGAAG 57.155 29.630 0.00 0.00 0.00 3.02
589 1344 8.250332 GGAGGTTTGCAAAGAATTAATATGTGA 58.750 33.333 13.26 0.00 0.00 3.58
598 1353 4.450976 GTTTGGGAGGTTTGCAAAGAATT 58.549 39.130 13.26 0.00 0.00 2.17
629 1384 5.308014 TGATGAGTGCTTTACAACATGAGT 58.692 37.500 0.00 0.00 31.96 3.41
633 1388 4.460034 TGCATGATGAGTGCTTTACAACAT 59.540 37.500 0.00 0.00 42.92 2.71
639 1394 6.519679 AAGATTTGCATGATGAGTGCTTTA 57.480 33.333 0.00 0.00 42.92 1.85
649 1404 2.164827 TGCGCTCAAAGATTTGCATGAT 59.835 40.909 9.73 0.00 38.05 2.45
652 1407 2.288334 TGTTGCGCTCAAAGATTTGCAT 60.288 40.909 9.73 0.00 38.05 3.96
676 1431 4.320348 GCTTAGGAGATTTGCATCATGAGC 60.320 45.833 0.09 5.90 0.00 4.26
725 1480 0.832626 ATGGGTCATGATGTGCTCGA 59.167 50.000 0.00 0.00 0.00 4.04
734 1489 2.241941 AGGTATGCAACATGGGTCATGA 59.758 45.455 13.96 0.00 43.81 3.07
762 1517 2.583593 GCGCTCGGTCTGATCCAC 60.584 66.667 0.00 0.00 0.00 4.02
780 1535 6.478512 AGGTTTGGAACACATGTTATGTTT 57.521 33.333 0.00 0.00 42.70 2.83
796 1551 3.564511 CATGTTACGCTTGAAGGTTTGG 58.435 45.455 0.00 0.00 0.00 3.28
810 1565 3.332034 ACGAGGCTTGTAACCATGTTAC 58.668 45.455 5.34 9.60 0.00 2.50
859 1614 3.757248 AATGATCGACTGGGGCGCC 62.757 63.158 21.18 21.18 0.00 6.53
863 1618 3.505680 TGTTTTCAAATGATCGACTGGGG 59.494 43.478 0.00 0.00 0.00 4.96
879 1634 1.725164 GGTCGGTCGACTGATGTTTTC 59.275 52.381 28.76 15.03 44.04 2.29
924 1679 1.534729 GTGGGGCTTTGGTCAAGTAG 58.465 55.000 0.00 0.00 34.56 2.57
1009 1772 2.037527 AGACTGACGGGGGAGGAC 59.962 66.667 0.00 0.00 0.00 3.85
1058 1821 2.677979 GCGCCGTCTGAGGTTTTCC 61.678 63.158 0.00 0.00 41.05 3.13
1297 2060 0.247736 GTGCAGAAGTCTCCATCCGT 59.752 55.000 0.00 0.00 0.00 4.69
1404 2167 1.668151 GATGCGGCCGGATAGGAAC 60.668 63.158 33.12 15.91 45.00 3.62
1419 2182 3.792053 GAGGCCACCTACGCGGATG 62.792 68.421 12.47 0.00 31.76 3.51
1595 2367 1.446099 GACGACGCTGATGCCAAGA 60.446 57.895 0.00 0.00 35.36 3.02
1617 2392 1.503347 GAGGAAGAGGAGGAGGAGGAT 59.497 57.143 0.00 0.00 0.00 3.24
1618 2393 0.930726 GAGGAAGAGGAGGAGGAGGA 59.069 60.000 0.00 0.00 0.00 3.71
1619 2394 0.933700 AGAGGAAGAGGAGGAGGAGG 59.066 60.000 0.00 0.00 0.00 4.30
1719 2494 2.280592 GCGGCGGTGGTAATAGGG 60.281 66.667 9.78 0.00 0.00 3.53
2016 2794 2.426842 AAGCCCTGAAACTATGCCTC 57.573 50.000 0.00 0.00 0.00 4.70
2037 2815 7.887996 AAAAGCGCATCAAATATTTTTCAGA 57.112 28.000 11.47 0.00 0.00 3.27
2348 3139 5.062058 GGAAAATGCACATTACATTTGGACG 59.938 40.000 2.75 0.00 44.76 4.79
2370 3161 7.092623 TGTCAGAGCCTTTATAACAAATAGGGA 60.093 37.037 2.99 0.00 0.00 4.20
2371 3162 7.054124 TGTCAGAGCCTTTATAACAAATAGGG 58.946 38.462 2.99 0.00 0.00 3.53
2372 3163 8.506168 TTGTCAGAGCCTTTATAACAAATAGG 57.494 34.615 0.00 0.00 0.00 2.57
2373 3164 9.774742 GTTTGTCAGAGCCTTTATAACAAATAG 57.225 33.333 0.00 0.00 37.44 1.73
2391 3182 4.044336 TGTTTGCAGGATTGTTTGTCAG 57.956 40.909 0.00 0.00 0.00 3.51
2414 3364 7.701539 TGCAGTATTGATCCAGTAATTGTTT 57.298 32.000 0.00 0.00 0.00 2.83
2572 3536 5.128008 GCTGACCTCAGTAACTTCCTTCTAT 59.872 44.000 4.26 0.00 45.45 1.98
2624 3592 4.758674 AGAGGTACGCGCTTTAGATATGTA 59.241 41.667 5.73 0.00 0.00 2.29
2625 3593 3.568853 AGAGGTACGCGCTTTAGATATGT 59.431 43.478 5.73 0.00 0.00 2.29
2626 3594 4.162096 AGAGGTACGCGCTTTAGATATG 57.838 45.455 5.73 0.00 0.00 1.78
2665 3771 3.836365 TCTCTTGATGGTGTGTGACAA 57.164 42.857 0.00 0.00 0.00 3.18
2694 3801 4.261031 GCCTACGATTTTGAATTACGCCAT 60.261 41.667 0.00 0.00 0.00 4.40
2699 3806 7.920738 AGAAGATGCCTACGATTTTGAATTAC 58.079 34.615 0.00 0.00 0.00 1.89
2750 3858 4.158949 CCCATCATGATGCACAGAGAAAAA 59.841 41.667 27.24 0.00 37.49 1.94
2763 3871 3.782523 ACAAGTACAGTCCCCATCATGAT 59.217 43.478 1.18 1.18 0.00 2.45
2898 4008 4.855340 AGACAGAACAGAAGGAAAAACCA 58.145 39.130 0.00 0.00 42.04 3.67
2906 4016 6.874288 AAATCAAAGAGACAGAACAGAAGG 57.126 37.500 0.00 0.00 0.00 3.46
2966 4076 4.657814 AGGTGTACTGAAACCATGGATT 57.342 40.909 21.47 14.05 39.05 3.01
2977 4087 5.045432 CCTACCCCAATAAAAGGTGTACTGA 60.045 44.000 0.00 0.00 35.02 3.41
2982 4092 4.180723 TCTCCTACCCCAATAAAAGGTGT 58.819 43.478 0.00 0.00 35.02 4.16
2986 4096 4.781934 CCACTCTCCTACCCCAATAAAAG 58.218 47.826 0.00 0.00 0.00 2.27
3092 4204 6.684686 ACATGTGAATCATTCCTTTGAACTG 58.315 36.000 0.00 0.00 34.09 3.16
3115 4227 5.122082 ACTTGCGACTCACTAACTAGACTAC 59.878 44.000 0.00 0.00 0.00 2.73
3129 4241 4.222114 CCAAGAAAATGAACTTGCGACTC 58.778 43.478 0.00 0.00 41.15 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.