Multiple sequence alignment - TraesCS3A01G171700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G171700 chr3A 100.000 3116 0 0 1 3116 186705453 186702338 0.000000e+00 5755.0
1 TraesCS3A01G171700 chr1A 97.460 2559 43 4 557 3115 403651342 403648806 0.000000e+00 4346.0
2 TraesCS3A01G171700 chr1A 79.503 161 29 4 2076 2234 334384588 334384746 9.130000e-21 111.0
3 TraesCS3A01G171700 chr1A 95.238 63 1 2 557 618 115941633 115941694 7.110000e-17 99.0
4 TraesCS3A01G171700 chr3B 97.148 2560 69 3 558 3115 417235197 417232640 0.000000e+00 4320.0
5 TraesCS3A01G171700 chr3B 80.124 161 28 4 2076 2234 828597067 828597225 1.960000e-22 117.0
6 TraesCS3A01G171700 chr1D 91.182 2563 218 6 557 3115 162115149 162112591 0.000000e+00 3474.0
7 TraesCS3A01G171700 chr2A 97.913 1198 25 0 1918 3115 777930593 777929396 0.000000e+00 2074.0
8 TraesCS3A01G171700 chr6A 83.608 1519 229 16 558 2061 533468718 533470231 0.000000e+00 1408.0
9 TraesCS3A01G171700 chr4B 90.141 355 34 1 2761 3115 431584011 431583658 7.870000e-126 460.0
10 TraesCS3A01G171700 chr4B 97.778 45 0 1 557 600 670081901 670081857 3.330000e-10 76.8
11 TraesCS3A01G171700 chrUn 98.214 168 3 0 2948 3115 346211354 346211187 8.450000e-76 294.0
12 TraesCS3A01G171700 chrUn 86.207 232 32 0 2884 3115 348952681 348952450 5.160000e-63 252.0
13 TraesCS3A01G171700 chrUn 86.207 232 32 0 2884 3115 348973516 348973285 5.160000e-63 252.0
14 TraesCS3A01G171700 chrUn 86.207 232 32 0 2884 3115 383122091 383121860 5.160000e-63 252.0
15 TraesCS3A01G171700 chr7A 90.598 117 7 4 400 516 121621329 121621217 5.380000e-33 152.0
16 TraesCS3A01G171700 chr5B 80.247 162 28 4 2075 2234 314978066 314977907 5.460000e-23 119.0
17 TraesCS3A01G171700 chr6B 80.124 161 28 4 2076 2234 80742931 80743089 1.960000e-22 117.0
18 TraesCS3A01G171700 chr6B 88.710 62 5 2 558 618 525168210 525168270 1.200000e-09 75.0
19 TraesCS3A01G171700 chr3D 80.247 162 26 6 2076 2234 230750339 230750181 1.960000e-22 117.0
20 TraesCS3A01G171700 chr2B 92.982 57 3 1 557 612 694754893 694754837 7.160000e-12 82.4
21 TraesCS3A01G171700 chr2B 92.982 57 3 1 557 612 694783654 694783598 7.160000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G171700 chr3A 186702338 186705453 3115 True 5755 5755 100.000 1 3116 1 chr3A.!!$R1 3115
1 TraesCS3A01G171700 chr1A 403648806 403651342 2536 True 4346 4346 97.460 557 3115 1 chr1A.!!$R1 2558
2 TraesCS3A01G171700 chr3B 417232640 417235197 2557 True 4320 4320 97.148 558 3115 1 chr3B.!!$R1 2557
3 TraesCS3A01G171700 chr1D 162112591 162115149 2558 True 3474 3474 91.182 557 3115 1 chr1D.!!$R1 2558
4 TraesCS3A01G171700 chr2A 777929396 777930593 1197 True 2074 2074 97.913 1918 3115 1 chr2A.!!$R1 1197
5 TraesCS3A01G171700 chr6A 533468718 533470231 1513 False 1408 1408 83.608 558 2061 1 chr6A.!!$F1 1503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 364 0.036306 CTAGGGAACGTTGGCCAGTT 59.964 55.0 5.0 9.99 0.00 3.16 F
513 514 0.179124 AACGCAAACAAACCACGCAT 60.179 45.0 0.0 0.00 0.00 4.73 F
674 675 0.544595 ACGCTACACCCTTCCCTCTT 60.545 55.0 0.0 0.00 0.00 2.85 F
1668 1681 0.531090 TCGGTGGTCGTGGACAAAAG 60.531 55.0 0.0 0.00 40.32 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1656 1669 0.821711 CCCTTGGCTTTTGTCCACGA 60.822 55.000 0.00 0.0 32.45 4.35 R
1668 1681 0.883833 CATGTTCTGTGTCCCTTGGC 59.116 55.000 0.00 0.0 0.00 4.52 R
1705 1718 1.607467 CCAAAACAGGGGCCTCAGG 60.607 63.158 4.79 0.0 0.00 3.86 R
2961 2980 2.501316 TCTCTCGATCCCATTCAAGCAA 59.499 45.455 0.00 0.0 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.892130 AATAAAACCACCATGTGAAAAGTTAAA 57.108 25.926 0.00 0.00 35.23 1.52
34 35 9.892130 ATAAAACCACCATGTGAAAAGTTAAAA 57.108 25.926 0.00 0.00 35.23 1.52
35 36 8.622948 AAAACCACCATGTGAAAAGTTAAAAA 57.377 26.923 0.00 0.00 35.23 1.94
36 37 7.841915 AACCACCATGTGAAAAGTTAAAAAG 57.158 32.000 0.00 0.00 35.23 2.27
37 38 7.176589 ACCACCATGTGAAAAGTTAAAAAGA 57.823 32.000 0.00 0.00 35.23 2.52
38 39 7.039270 ACCACCATGTGAAAAGTTAAAAAGAC 58.961 34.615 0.00 0.00 35.23 3.01
39 40 7.038659 CCACCATGTGAAAAGTTAAAAAGACA 58.961 34.615 0.00 0.00 35.23 3.41
40 41 7.222611 CCACCATGTGAAAAGTTAAAAAGACAG 59.777 37.037 0.00 0.00 35.23 3.51
41 42 7.222611 CACCATGTGAAAAGTTAAAAAGACAGG 59.777 37.037 0.00 0.00 35.23 4.00
42 43 6.701400 CCATGTGAAAAGTTAAAAAGACAGGG 59.299 38.462 0.00 0.00 0.00 4.45
43 44 6.844097 TGTGAAAAGTTAAAAAGACAGGGT 57.156 33.333 0.00 0.00 0.00 4.34
44 45 7.234661 TGTGAAAAGTTAAAAAGACAGGGTT 57.765 32.000 0.00 0.00 0.00 4.11
45 46 7.672240 TGTGAAAAGTTAAAAAGACAGGGTTT 58.328 30.769 0.00 0.00 0.00 3.27
46 47 8.151596 TGTGAAAAGTTAAAAAGACAGGGTTTT 58.848 29.630 0.00 0.00 0.00 2.43
47 48 8.653338 GTGAAAAGTTAAAAAGACAGGGTTTTC 58.347 33.333 0.00 0.00 33.81 2.29
48 49 8.590204 TGAAAAGTTAAAAAGACAGGGTTTTCT 58.410 29.630 0.00 0.00 34.16 2.52
49 50 8.771920 AAAAGTTAAAAAGACAGGGTTTTCTG 57.228 30.769 0.00 0.00 40.40 3.02
50 51 7.712204 AAGTTAAAAAGACAGGGTTTTCTGA 57.288 32.000 0.00 0.00 38.11 3.27
51 52 7.096884 AGTTAAAAAGACAGGGTTTTCTGAC 57.903 36.000 0.00 0.00 38.11 3.51
52 53 6.661805 AGTTAAAAAGACAGGGTTTTCTGACA 59.338 34.615 0.00 0.00 38.11 3.58
53 54 5.993748 AAAAAGACAGGGTTTTCTGACAA 57.006 34.783 0.00 0.00 38.11 3.18
54 55 5.993748 AAAAGACAGGGTTTTCTGACAAA 57.006 34.783 0.00 0.00 38.11 2.83
55 56 6.544928 AAAAGACAGGGTTTTCTGACAAAT 57.455 33.333 0.00 0.00 38.11 2.32
56 57 6.544928 AAAGACAGGGTTTTCTGACAAATT 57.455 33.333 0.00 0.00 38.11 1.82
57 58 7.654022 AAAGACAGGGTTTTCTGACAAATTA 57.346 32.000 0.00 0.00 38.11 1.40
58 59 7.654022 AAGACAGGGTTTTCTGACAAATTAA 57.346 32.000 0.00 0.00 38.11 1.40
59 60 7.654022 AGACAGGGTTTTCTGACAAATTAAA 57.346 32.000 0.00 0.00 38.11 1.52
60 61 8.073467 AGACAGGGTTTTCTGACAAATTAAAA 57.927 30.769 0.00 0.00 38.11 1.52
61 62 8.536175 AGACAGGGTTTTCTGACAAATTAAAAA 58.464 29.630 0.00 0.00 38.11 1.94
84 85 8.729805 AAAACAATAAAGCCTTGAAAATGTCA 57.270 26.923 0.00 0.00 0.00 3.58
85 86 8.729805 AAACAATAAAGCCTTGAAAATGTCAA 57.270 26.923 0.00 0.00 44.20 3.18
124 125 8.994429 ATCAGTTTTAACACAAATGTTCACAA 57.006 26.923 0.00 0.00 46.46 3.33
125 126 8.233692 TCAGTTTTAACACAAATGTTCACAAC 57.766 30.769 0.00 0.00 46.46 3.32
126 127 8.085296 TCAGTTTTAACACAAATGTTCACAACT 58.915 29.630 0.00 1.83 46.46 3.16
127 128 8.372521 CAGTTTTAACACAAATGTTCACAACTC 58.627 33.333 0.00 0.00 46.46 3.01
128 129 7.544217 AGTTTTAACACAAATGTTCACAACTCC 59.456 33.333 0.00 0.00 46.46 3.85
129 130 4.385358 AACACAAATGTTCACAACTCCC 57.615 40.909 0.00 0.00 46.46 4.30
130 131 2.693074 ACACAAATGTTCACAACTCCCC 59.307 45.455 0.00 0.00 34.46 4.81
131 132 2.958355 CACAAATGTTCACAACTCCCCT 59.042 45.455 0.00 0.00 0.00 4.79
132 133 3.004734 CACAAATGTTCACAACTCCCCTC 59.995 47.826 0.00 0.00 0.00 4.30
133 134 3.117512 ACAAATGTTCACAACTCCCCTCT 60.118 43.478 0.00 0.00 0.00 3.69
134 135 3.884037 AATGTTCACAACTCCCCTCTT 57.116 42.857 0.00 0.00 0.00 2.85
135 136 2.930826 TGTTCACAACTCCCCTCTTC 57.069 50.000 0.00 0.00 0.00 2.87
136 137 1.420138 TGTTCACAACTCCCCTCTTCC 59.580 52.381 0.00 0.00 0.00 3.46
137 138 0.685097 TTCACAACTCCCCTCTTCCG 59.315 55.000 0.00 0.00 0.00 4.30
138 139 1.376037 CACAACTCCCCTCTTCCGC 60.376 63.158 0.00 0.00 0.00 5.54
139 140 2.269241 CAACTCCCCTCTTCCGCC 59.731 66.667 0.00 0.00 0.00 6.13
140 141 2.122954 AACTCCCCTCTTCCGCCT 59.877 61.111 0.00 0.00 0.00 5.52
141 142 0.976073 CAACTCCCCTCTTCCGCCTA 60.976 60.000 0.00 0.00 0.00 3.93
142 143 0.688087 AACTCCCCTCTTCCGCCTAG 60.688 60.000 0.00 0.00 0.00 3.02
143 144 1.075896 CTCCCCTCTTCCGCCTAGT 60.076 63.158 0.00 0.00 0.00 2.57
144 145 1.381327 TCCCCTCTTCCGCCTAGTG 60.381 63.158 0.00 0.00 0.00 2.74
145 146 1.381327 CCCCTCTTCCGCCTAGTGA 60.381 63.158 0.00 0.00 0.00 3.41
146 147 0.976073 CCCCTCTTCCGCCTAGTGAA 60.976 60.000 0.00 0.00 0.00 3.18
147 148 0.902531 CCCTCTTCCGCCTAGTGAAA 59.097 55.000 0.00 0.00 0.00 2.69
148 149 1.278127 CCCTCTTCCGCCTAGTGAAAA 59.722 52.381 0.00 0.00 0.00 2.29
149 150 2.622436 CCTCTTCCGCCTAGTGAAAAG 58.378 52.381 0.00 0.00 0.00 2.27
150 151 2.622436 CTCTTCCGCCTAGTGAAAAGG 58.378 52.381 0.00 0.00 37.17 3.11
162 163 2.333014 GTGAAAAGGCTCACTCTCTCG 58.667 52.381 0.00 0.00 42.11 4.04
163 164 1.337260 TGAAAAGGCTCACTCTCTCGC 60.337 52.381 0.00 0.00 0.00 5.03
164 165 0.681733 AAAAGGCTCACTCTCTCGCA 59.318 50.000 0.00 0.00 0.00 5.10
165 166 0.681733 AAAGGCTCACTCTCTCGCAA 59.318 50.000 0.00 0.00 0.00 4.85
166 167 0.246086 AAGGCTCACTCTCTCGCAAG 59.754 55.000 0.00 0.00 0.00 4.01
179 180 3.952811 GCAAGAGGTCGCGAGTTT 58.047 55.556 10.24 0.00 0.00 2.66
180 181 1.493311 GCAAGAGGTCGCGAGTTTG 59.507 57.895 10.24 12.85 0.00 2.93
181 182 0.944311 GCAAGAGGTCGCGAGTTTGA 60.944 55.000 10.24 0.00 0.00 2.69
182 183 1.497991 CAAGAGGTCGCGAGTTTGAA 58.502 50.000 10.24 0.00 0.00 2.69
183 184 1.864711 CAAGAGGTCGCGAGTTTGAAA 59.135 47.619 10.24 0.00 0.00 2.69
184 185 1.499049 AGAGGTCGCGAGTTTGAAAC 58.501 50.000 10.24 0.00 0.00 2.78
185 186 1.202486 AGAGGTCGCGAGTTTGAAACA 60.202 47.619 10.24 0.00 0.00 2.83
186 187 1.798813 GAGGTCGCGAGTTTGAAACAT 59.201 47.619 10.24 0.00 0.00 2.71
187 188 1.798813 AGGTCGCGAGTTTGAAACATC 59.201 47.619 10.24 4.44 0.00 3.06
188 189 1.136057 GGTCGCGAGTTTGAAACATCC 60.136 52.381 10.24 0.00 0.00 3.51
189 190 1.798813 GTCGCGAGTTTGAAACATCCT 59.201 47.619 10.24 0.00 0.00 3.24
190 191 2.066262 TCGCGAGTTTGAAACATCCTC 58.934 47.619 3.71 0.00 0.00 3.71
191 192 1.128692 CGCGAGTTTGAAACATCCTCC 59.871 52.381 11.02 0.00 0.00 4.30
192 193 2.151202 GCGAGTTTGAAACATCCTCCA 58.849 47.619 11.02 0.00 0.00 3.86
193 194 2.095718 GCGAGTTTGAAACATCCTCCAC 60.096 50.000 11.02 0.00 0.00 4.02
194 195 3.138304 CGAGTTTGAAACATCCTCCACA 58.862 45.455 11.02 0.00 0.00 4.17
195 196 3.058914 CGAGTTTGAAACATCCTCCACAC 60.059 47.826 11.02 0.00 0.00 3.82
196 197 2.878406 AGTTTGAAACATCCTCCACACG 59.122 45.455 11.02 0.00 0.00 4.49
197 198 1.234821 TTGAAACATCCTCCACACGC 58.765 50.000 0.00 0.00 0.00 5.34
198 199 0.948623 TGAAACATCCTCCACACGCG 60.949 55.000 3.53 3.53 0.00 6.01
199 200 0.949105 GAAACATCCTCCACACGCGT 60.949 55.000 5.58 5.58 0.00 6.01
200 201 0.534203 AAACATCCTCCACACGCGTT 60.534 50.000 10.22 0.00 0.00 4.84
201 202 1.227999 AACATCCTCCACACGCGTTG 61.228 55.000 10.22 11.76 0.00 4.10
202 203 2.742372 ATCCTCCACACGCGTTGC 60.742 61.111 10.22 0.00 0.00 4.17
203 204 3.529341 ATCCTCCACACGCGTTGCA 62.529 57.895 10.22 0.00 0.00 4.08
204 205 4.012895 CCTCCACACGCGTTGCAC 62.013 66.667 10.22 0.00 0.00 4.57
205 206 3.268603 CTCCACACGCGTTGCACA 61.269 61.111 10.22 0.00 0.00 4.57
206 207 2.590291 TCCACACGCGTTGCACAT 60.590 55.556 10.22 0.00 0.00 3.21
207 208 2.116736 CTCCACACGCGTTGCACATT 62.117 55.000 10.22 0.00 0.00 2.71
208 209 1.299014 CCACACGCGTTGCACATTT 60.299 52.632 10.22 0.00 0.00 2.32
209 210 0.869454 CCACACGCGTTGCACATTTT 60.869 50.000 10.22 0.00 0.00 1.82
210 211 0.226734 CACACGCGTTGCACATTTTG 59.773 50.000 10.22 0.00 0.00 2.44
211 212 0.099613 ACACGCGTTGCACATTTTGA 59.900 45.000 10.22 0.00 0.00 2.69
212 213 1.195347 CACGCGTTGCACATTTTGAA 58.805 45.000 10.22 0.00 0.00 2.69
213 214 1.786004 CACGCGTTGCACATTTTGAAT 59.214 42.857 10.22 0.00 0.00 2.57
214 215 2.976509 CACGCGTTGCACATTTTGAATA 59.023 40.909 10.22 0.00 0.00 1.75
215 216 3.423536 CACGCGTTGCACATTTTGAATAA 59.576 39.130 10.22 0.00 0.00 1.40
216 217 4.045104 ACGCGTTGCACATTTTGAATAAA 58.955 34.783 5.58 0.00 0.00 1.40
217 218 4.148000 ACGCGTTGCACATTTTGAATAAAG 59.852 37.500 5.58 0.00 0.00 1.85
218 219 4.381270 CGCGTTGCACATTTTGAATAAAGA 59.619 37.500 0.00 0.00 0.00 2.52
219 220 5.108065 CGCGTTGCACATTTTGAATAAAGAA 60.108 36.000 0.00 0.00 0.00 2.52
220 221 6.561166 CGCGTTGCACATTTTGAATAAAGAAA 60.561 34.615 0.00 0.00 0.00 2.52
221 222 7.122550 GCGTTGCACATTTTGAATAAAGAAAA 58.877 30.769 0.00 0.00 0.00 2.29
222 223 7.637907 GCGTTGCACATTTTGAATAAAGAAAAA 59.362 29.630 0.00 0.00 0.00 1.94
223 224 9.146270 CGTTGCACATTTTGAATAAAGAAAAAG 57.854 29.630 0.00 0.00 0.00 2.27
248 249 9.354673 AGAAAAATGAGAGTTTATCAGGAAACA 57.645 29.630 2.23 0.00 41.00 2.83
249 250 9.965824 GAAAAATGAGAGTTTATCAGGAAACAA 57.034 29.630 2.23 0.00 41.00 2.83
250 251 9.750125 AAAAATGAGAGTTTATCAGGAAACAAC 57.250 29.630 2.23 0.00 41.00 3.32
251 252 8.463930 AAATGAGAGTTTATCAGGAAACAACA 57.536 30.769 2.23 0.35 41.00 3.33
252 253 8.463930 AATGAGAGTTTATCAGGAAACAACAA 57.536 30.769 2.23 0.00 41.00 2.83
253 254 7.873719 TGAGAGTTTATCAGGAAACAACAAA 57.126 32.000 2.23 0.00 41.00 2.83
254 255 7.703328 TGAGAGTTTATCAGGAAACAACAAAC 58.297 34.615 2.23 0.00 41.00 2.93
255 256 7.338196 TGAGAGTTTATCAGGAAACAACAAACA 59.662 33.333 2.23 0.00 41.00 2.83
256 257 8.062065 AGAGTTTATCAGGAAACAACAAACAA 57.938 30.769 2.23 0.00 41.00 2.83
257 258 7.973944 AGAGTTTATCAGGAAACAACAAACAAC 59.026 33.333 2.23 0.00 41.00 3.32
258 259 6.750039 AGTTTATCAGGAAACAACAAACAACG 59.250 34.615 2.23 0.00 41.00 4.10
259 260 4.974368 ATCAGGAAACAACAAACAACGA 57.026 36.364 0.00 0.00 0.00 3.85
260 261 4.768130 TCAGGAAACAACAAACAACGAA 57.232 36.364 0.00 0.00 0.00 3.85
261 262 4.477780 TCAGGAAACAACAAACAACGAAC 58.522 39.130 0.00 0.00 0.00 3.95
262 263 3.299542 CAGGAAACAACAAACAACGAACG 59.700 43.478 0.00 0.00 0.00 3.95
263 264 2.027096 GGAAACAACAAACAACGAACGC 59.973 45.455 0.00 0.00 0.00 4.84
264 265 1.619983 AACAACAAACAACGAACGCC 58.380 45.000 0.00 0.00 0.00 5.68
265 266 0.806241 ACAACAAACAACGAACGCCT 59.194 45.000 0.00 0.00 0.00 5.52
266 267 1.200484 ACAACAAACAACGAACGCCTT 59.800 42.857 0.00 0.00 0.00 4.35
267 268 1.843753 CAACAAACAACGAACGCCTTC 59.156 47.619 0.00 0.00 0.00 3.46
279 280 2.485122 GCCTTCGGCCATTCAACG 59.515 61.111 2.24 0.00 44.06 4.10
280 281 2.332654 GCCTTCGGCCATTCAACGT 61.333 57.895 2.24 0.00 44.06 3.99
281 282 1.501741 CCTTCGGCCATTCAACGTG 59.498 57.895 2.24 0.00 0.00 4.49
282 283 1.501741 CTTCGGCCATTCAACGTGG 59.498 57.895 2.24 0.00 39.80 4.94
303 304 4.800554 CACCCTTGTGTCCAGACC 57.199 61.111 0.00 0.00 37.72 3.85
304 305 1.073199 CACCCTTGTGTCCAGACCC 59.927 63.158 0.00 0.00 37.72 4.46
305 306 1.385347 ACCCTTGTGTCCAGACCCA 60.385 57.895 0.00 0.00 0.00 4.51
306 307 0.772124 ACCCTTGTGTCCAGACCCAT 60.772 55.000 0.00 0.00 0.00 4.00
307 308 0.322816 CCCTTGTGTCCAGACCCATG 60.323 60.000 0.00 0.00 0.00 3.66
308 309 0.401738 CCTTGTGTCCAGACCCATGT 59.598 55.000 0.00 0.00 0.00 3.21
309 310 1.628340 CCTTGTGTCCAGACCCATGTA 59.372 52.381 0.00 0.00 0.00 2.29
310 311 2.039746 CCTTGTGTCCAGACCCATGTAA 59.960 50.000 0.00 0.00 0.00 2.41
311 312 3.308402 CCTTGTGTCCAGACCCATGTAAT 60.308 47.826 0.00 0.00 0.00 1.89
312 313 3.348647 TGTGTCCAGACCCATGTAATG 57.651 47.619 0.00 0.00 46.21 1.90
330 331 3.076916 GGGGGTGAGGGCATTTGC 61.077 66.667 0.00 0.00 41.14 3.68
340 341 3.064324 GCATTTGCCAGGGTCGCT 61.064 61.111 0.00 0.00 34.31 4.93
341 342 3.056313 GCATTTGCCAGGGTCGCTC 62.056 63.158 0.00 0.00 34.31 5.03
342 343 1.377725 CATTTGCCAGGGTCGCTCT 60.378 57.895 0.00 0.00 0.00 4.09
343 344 0.962356 CATTTGCCAGGGTCGCTCTT 60.962 55.000 0.00 0.00 0.00 2.85
344 345 0.678048 ATTTGCCAGGGTCGCTCTTC 60.678 55.000 0.00 0.00 0.00 2.87
345 346 1.768684 TTTGCCAGGGTCGCTCTTCT 61.769 55.000 0.00 0.00 0.00 2.85
346 347 0.902984 TTGCCAGGGTCGCTCTTCTA 60.903 55.000 0.00 0.00 0.00 2.10
347 348 1.323271 TGCCAGGGTCGCTCTTCTAG 61.323 60.000 0.00 0.00 0.00 2.43
348 349 2.022240 GCCAGGGTCGCTCTTCTAGG 62.022 65.000 0.00 0.00 0.00 3.02
349 350 1.395826 CCAGGGTCGCTCTTCTAGGG 61.396 65.000 0.00 0.00 39.48 3.53
350 351 0.395862 CAGGGTCGCTCTTCTAGGGA 60.396 60.000 0.00 0.00 44.34 4.20
354 355 3.261250 TCGCTCTTCTAGGGAACGT 57.739 52.632 8.44 0.00 43.65 3.99
355 356 1.542492 TCGCTCTTCTAGGGAACGTT 58.458 50.000 0.00 0.00 43.65 3.99
356 357 1.201647 TCGCTCTTCTAGGGAACGTTG 59.798 52.381 5.00 0.00 43.65 4.10
357 358 1.736032 CGCTCTTCTAGGGAACGTTGG 60.736 57.143 5.00 0.00 40.56 3.77
358 359 2.007547 GCTCTTCTAGGGAACGTTGGC 61.008 57.143 5.00 0.00 0.00 4.52
359 360 0.611714 TCTTCTAGGGAACGTTGGCC 59.388 55.000 5.00 0.41 0.00 5.36
360 361 0.323629 CTTCTAGGGAACGTTGGCCA 59.676 55.000 5.00 0.00 0.00 5.36
361 362 0.323629 TTCTAGGGAACGTTGGCCAG 59.676 55.000 5.00 0.00 0.00 4.85
362 363 0.834687 TCTAGGGAACGTTGGCCAGT 60.835 55.000 5.00 0.00 0.00 4.00
363 364 0.036306 CTAGGGAACGTTGGCCAGTT 59.964 55.000 5.00 9.99 0.00 3.16
364 365 1.276989 CTAGGGAACGTTGGCCAGTTA 59.723 52.381 5.00 0.00 0.00 2.24
365 366 0.250597 AGGGAACGTTGGCCAGTTAC 60.251 55.000 5.00 10.95 0.00 2.50
366 367 0.250597 GGGAACGTTGGCCAGTTACT 60.251 55.000 17.24 0.00 32.06 2.24
367 368 1.002315 GGGAACGTTGGCCAGTTACTA 59.998 52.381 17.24 0.00 32.06 1.82
368 369 2.355412 GGGAACGTTGGCCAGTTACTAT 60.355 50.000 17.24 0.96 32.06 2.12
369 370 3.340928 GGAACGTTGGCCAGTTACTATT 58.659 45.455 5.00 3.12 0.00 1.73
370 371 3.754850 GGAACGTTGGCCAGTTACTATTT 59.245 43.478 5.00 0.00 0.00 1.40
371 372 4.216902 GGAACGTTGGCCAGTTACTATTTT 59.783 41.667 5.00 0.00 0.00 1.82
372 373 5.278610 GGAACGTTGGCCAGTTACTATTTTT 60.279 40.000 5.00 0.00 0.00 1.94
373 374 5.116069 ACGTTGGCCAGTTACTATTTTTG 57.884 39.130 5.11 0.00 0.00 2.44
374 375 4.581409 ACGTTGGCCAGTTACTATTTTTGT 59.419 37.500 5.11 0.00 0.00 2.83
375 376 5.068067 ACGTTGGCCAGTTACTATTTTTGTT 59.932 36.000 5.11 0.00 0.00 2.83
376 377 6.262720 ACGTTGGCCAGTTACTATTTTTGTTA 59.737 34.615 5.11 0.00 0.00 2.41
377 378 6.579666 CGTTGGCCAGTTACTATTTTTGTTAC 59.420 38.462 5.11 0.00 0.00 2.50
378 379 7.520937 CGTTGGCCAGTTACTATTTTTGTTACT 60.521 37.037 5.11 0.00 0.00 2.24
379 380 7.826918 TGGCCAGTTACTATTTTTGTTACTT 57.173 32.000 0.00 0.00 0.00 2.24
380 381 8.240267 TGGCCAGTTACTATTTTTGTTACTTT 57.760 30.769 0.00 0.00 0.00 2.66
381 382 8.697292 TGGCCAGTTACTATTTTTGTTACTTTT 58.303 29.630 0.00 0.00 0.00 2.27
382 383 9.537192 GGCCAGTTACTATTTTTGTTACTTTTT 57.463 29.630 0.00 0.00 0.00 1.94
409 410 7.948278 ACTTTTCGCACATAATCTACTATCC 57.052 36.000 0.00 0.00 0.00 2.59
410 411 6.929606 ACTTTTCGCACATAATCTACTATCCC 59.070 38.462 0.00 0.00 0.00 3.85
411 412 5.401531 TTCGCACATAATCTACTATCCCC 57.598 43.478 0.00 0.00 0.00 4.81
412 413 4.412843 TCGCACATAATCTACTATCCCCA 58.587 43.478 0.00 0.00 0.00 4.96
413 414 5.023452 TCGCACATAATCTACTATCCCCAT 58.977 41.667 0.00 0.00 0.00 4.00
414 415 6.192044 TCGCACATAATCTACTATCCCCATA 58.808 40.000 0.00 0.00 0.00 2.74
415 416 6.666113 TCGCACATAATCTACTATCCCCATAA 59.334 38.462 0.00 0.00 0.00 1.90
416 417 7.179516 TCGCACATAATCTACTATCCCCATAAA 59.820 37.037 0.00 0.00 0.00 1.40
417 418 7.822334 CGCACATAATCTACTATCCCCATAAAA 59.178 37.037 0.00 0.00 0.00 1.52
418 419 9.167311 GCACATAATCTACTATCCCCATAAAAG 57.833 37.037 0.00 0.00 0.00 2.27
425 426 9.676129 ATCTACTATCCCCATAAAAGAAAGAGA 57.324 33.333 0.00 0.00 0.00 3.10
426 427 9.148879 TCTACTATCCCCATAAAAGAAAGAGAG 57.851 37.037 0.00 0.00 0.00 3.20
427 428 7.996758 ACTATCCCCATAAAAGAAAGAGAGA 57.003 36.000 0.00 0.00 0.00 3.10
428 429 8.393959 ACTATCCCCATAAAAGAAAGAGAGAA 57.606 34.615 0.00 0.00 0.00 2.87
429 430 8.268605 ACTATCCCCATAAAAGAAAGAGAGAAC 58.731 37.037 0.00 0.00 0.00 3.01
430 431 5.488341 TCCCCATAAAAGAAAGAGAGAACG 58.512 41.667 0.00 0.00 0.00 3.95
431 432 4.636206 CCCCATAAAAGAAAGAGAGAACGG 59.364 45.833 0.00 0.00 0.00 4.44
432 433 5.488341 CCCATAAAAGAAAGAGAGAACGGA 58.512 41.667 0.00 0.00 0.00 4.69
433 434 5.582665 CCCATAAAAGAAAGAGAGAACGGAG 59.417 44.000 0.00 0.00 0.00 4.63
434 435 6.398918 CCATAAAAGAAAGAGAGAACGGAGA 58.601 40.000 0.00 0.00 0.00 3.71
435 436 6.874134 CCATAAAAGAAAGAGAGAACGGAGAA 59.126 38.462 0.00 0.00 0.00 2.87
436 437 7.148557 CCATAAAAGAAAGAGAGAACGGAGAAC 60.149 40.741 0.00 0.00 0.00 3.01
437 438 3.945981 AGAAAGAGAGAACGGAGAACC 57.054 47.619 0.00 0.00 0.00 3.62
438 439 3.231818 AGAAAGAGAGAACGGAGAACCA 58.768 45.455 0.00 0.00 35.59 3.67
439 440 3.641906 AGAAAGAGAGAACGGAGAACCAA 59.358 43.478 0.00 0.00 35.59 3.67
440 441 4.101119 AGAAAGAGAGAACGGAGAACCAAA 59.899 41.667 0.00 0.00 35.59 3.28
441 442 3.388345 AGAGAGAACGGAGAACCAAAC 57.612 47.619 0.00 0.00 35.59 2.93
442 443 2.698797 AGAGAGAACGGAGAACCAAACA 59.301 45.455 0.00 0.00 35.59 2.83
443 444 3.134081 AGAGAGAACGGAGAACCAAACAA 59.866 43.478 0.00 0.00 35.59 2.83
444 445 4.065789 GAGAGAACGGAGAACCAAACAAT 58.934 43.478 0.00 0.00 35.59 2.71
445 446 4.065789 AGAGAACGGAGAACCAAACAATC 58.934 43.478 0.00 0.00 35.59 2.67
446 447 3.813166 GAGAACGGAGAACCAAACAATCA 59.187 43.478 0.00 0.00 35.59 2.57
447 448 4.204012 AGAACGGAGAACCAAACAATCAA 58.796 39.130 0.00 0.00 35.59 2.57
448 449 4.642885 AGAACGGAGAACCAAACAATCAAA 59.357 37.500 0.00 0.00 35.59 2.69
449 450 5.301805 AGAACGGAGAACCAAACAATCAAAT 59.698 36.000 0.00 0.00 35.59 2.32
450 451 5.529581 ACGGAGAACCAAACAATCAAATT 57.470 34.783 0.00 0.00 35.59 1.82
451 452 5.528870 ACGGAGAACCAAACAATCAAATTC 58.471 37.500 0.00 0.00 35.59 2.17
452 453 5.068460 ACGGAGAACCAAACAATCAAATTCA 59.932 36.000 0.00 0.00 35.59 2.57
453 454 6.158598 CGGAGAACCAAACAATCAAATTCAT 58.841 36.000 0.00 0.00 35.59 2.57
454 455 6.308766 CGGAGAACCAAACAATCAAATTCATC 59.691 38.462 0.00 0.00 35.59 2.92
455 456 6.591448 GGAGAACCAAACAATCAAATTCATCC 59.409 38.462 0.00 0.00 35.97 3.51
456 457 7.065120 AGAACCAAACAATCAAATTCATCCA 57.935 32.000 0.00 0.00 0.00 3.41
457 458 7.682628 AGAACCAAACAATCAAATTCATCCAT 58.317 30.769 0.00 0.00 0.00 3.41
458 459 7.820872 AGAACCAAACAATCAAATTCATCCATC 59.179 33.333 0.00 0.00 0.00 3.51
459 460 7.006865 ACCAAACAATCAAATTCATCCATCA 57.993 32.000 0.00 0.00 0.00 3.07
460 461 7.451732 ACCAAACAATCAAATTCATCCATCAA 58.548 30.769 0.00 0.00 0.00 2.57
461 462 7.388500 ACCAAACAATCAAATTCATCCATCAAC 59.612 33.333 0.00 0.00 0.00 3.18
462 463 7.388224 CCAAACAATCAAATTCATCCATCAACA 59.612 33.333 0.00 0.00 0.00 3.33
463 464 8.775527 CAAACAATCAAATTCATCCATCAACAA 58.224 29.630 0.00 0.00 0.00 2.83
464 465 8.542497 AACAATCAAATTCATCCATCAACAAG 57.458 30.769 0.00 0.00 0.00 3.16
465 466 7.898918 ACAATCAAATTCATCCATCAACAAGA 58.101 30.769 0.00 0.00 0.00 3.02
466 467 8.537016 ACAATCAAATTCATCCATCAACAAGAT 58.463 29.630 0.00 0.00 37.48 2.40
467 468 9.031360 CAATCAAATTCATCCATCAACAAGATC 57.969 33.333 0.00 0.00 33.72 2.75
468 469 7.949690 TCAAATTCATCCATCAACAAGATCT 57.050 32.000 0.00 0.00 33.72 2.75
469 470 9.636789 ATCAAATTCATCCATCAACAAGATCTA 57.363 29.630 0.00 0.00 33.72 1.98
470 471 9.465199 TCAAATTCATCCATCAACAAGATCTAA 57.535 29.630 0.00 0.00 33.72 2.10
473 474 9.636789 AATTCATCCATCAACAAGATCTAATGA 57.363 29.630 0.00 1.37 33.72 2.57
474 475 9.809395 ATTCATCCATCAACAAGATCTAATGAT 57.191 29.630 10.46 10.46 33.72 2.45
476 477 9.716531 TCATCCATCAACAAGATCTAATGATAC 57.283 33.333 14.13 0.00 33.72 2.24
477 478 9.722184 CATCCATCAACAAGATCTAATGATACT 57.278 33.333 14.13 3.97 33.72 2.12
497 498 9.529325 TGATACTTAATCCTCTGATGTTTAACG 57.471 33.333 0.00 0.00 33.22 3.18
498 499 6.663944 ACTTAATCCTCTGATGTTTAACGC 57.336 37.500 0.00 0.00 0.00 4.84
499 500 6.170506 ACTTAATCCTCTGATGTTTAACGCA 58.829 36.000 0.00 0.00 0.00 5.24
500 501 6.653320 ACTTAATCCTCTGATGTTTAACGCAA 59.347 34.615 0.00 0.00 0.00 4.85
501 502 5.957842 AATCCTCTGATGTTTAACGCAAA 57.042 34.783 0.00 0.00 0.00 3.68
502 503 4.742438 TCCTCTGATGTTTAACGCAAAC 57.258 40.909 6.34 6.34 45.72 2.93
510 511 3.540191 GTTTAACGCAAACAAACCACG 57.460 42.857 8.03 0.00 45.01 4.94
511 512 1.546834 TTAACGCAAACAAACCACGC 58.453 45.000 0.00 0.00 0.00 5.34
512 513 0.450583 TAACGCAAACAAACCACGCA 59.549 45.000 0.00 0.00 0.00 5.24
513 514 0.179124 AACGCAAACAAACCACGCAT 60.179 45.000 0.00 0.00 0.00 4.73
514 515 0.179124 ACGCAAACAAACCACGCATT 60.179 45.000 0.00 0.00 0.00 3.56
515 516 1.065701 ACGCAAACAAACCACGCATTA 59.934 42.857 0.00 0.00 0.00 1.90
516 517 1.713404 CGCAAACAAACCACGCATTAG 59.287 47.619 0.00 0.00 0.00 1.73
517 518 2.058057 GCAAACAAACCACGCATTAGG 58.942 47.619 0.00 0.00 0.00 2.69
518 519 2.671596 CAAACAAACCACGCATTAGGG 58.328 47.619 0.00 0.00 0.00 3.53
519 520 1.989706 AACAAACCACGCATTAGGGT 58.010 45.000 0.00 0.00 42.26 4.34
520 521 1.989706 ACAAACCACGCATTAGGGTT 58.010 45.000 0.00 0.00 46.43 4.11
524 525 2.579410 ACCACGCATTAGGGTTTTCT 57.421 45.000 0.00 0.00 39.11 2.52
525 526 2.871453 ACCACGCATTAGGGTTTTCTT 58.129 42.857 0.00 0.00 39.11 2.52
526 527 2.556622 ACCACGCATTAGGGTTTTCTTG 59.443 45.455 0.00 0.00 39.11 3.02
527 528 2.817258 CCACGCATTAGGGTTTTCTTGA 59.183 45.455 0.00 0.00 39.11 3.02
528 529 3.365969 CCACGCATTAGGGTTTTCTTGAC 60.366 47.826 0.00 0.00 39.11 3.18
529 530 2.482721 ACGCATTAGGGTTTTCTTGACG 59.517 45.455 0.00 0.00 37.72 4.35
530 531 2.727916 CGCATTAGGGTTTTCTTGACGC 60.728 50.000 0.00 0.00 0.00 5.19
531 532 2.227865 GCATTAGGGTTTTCTTGACGCA 59.772 45.455 0.00 0.00 32.91 5.24
532 533 3.305064 GCATTAGGGTTTTCTTGACGCAA 60.305 43.478 0.00 0.00 32.91 4.85
533 534 4.794655 GCATTAGGGTTTTCTTGACGCAAA 60.795 41.667 0.00 0.00 32.91 3.68
534 535 4.985538 TTAGGGTTTTCTTGACGCAAAA 57.014 36.364 0.00 0.00 32.91 2.44
535 536 3.159353 AGGGTTTTCTTGACGCAAAAC 57.841 42.857 0.00 0.00 40.37 2.43
536 537 2.758423 AGGGTTTTCTTGACGCAAAACT 59.242 40.909 7.49 0.00 40.74 2.66
537 538 2.857748 GGGTTTTCTTGACGCAAAACTG 59.142 45.455 7.49 0.00 40.74 3.16
538 539 3.428316 GGGTTTTCTTGACGCAAAACTGA 60.428 43.478 7.49 0.00 40.74 3.41
539 540 4.170256 GGTTTTCTTGACGCAAAACTGAA 58.830 39.130 7.49 0.00 40.74 3.02
540 541 4.623595 GGTTTTCTTGACGCAAAACTGAAA 59.376 37.500 7.49 0.00 40.74 2.69
541 542 5.220209 GGTTTTCTTGACGCAAAACTGAAAG 60.220 40.000 7.49 0.00 40.74 2.62
542 543 4.955925 TTCTTGACGCAAAACTGAAAGA 57.044 36.364 0.00 0.00 37.43 2.52
543 544 4.955925 TCTTGACGCAAAACTGAAAGAA 57.044 36.364 0.00 0.00 37.43 2.52
544 545 5.303747 TCTTGACGCAAAACTGAAAGAAA 57.696 34.783 0.00 0.00 37.43 2.52
545 546 5.331902 TCTTGACGCAAAACTGAAAGAAAG 58.668 37.500 0.00 0.00 37.43 2.62
546 547 3.434637 TGACGCAAAACTGAAAGAAAGC 58.565 40.909 0.00 0.00 37.43 3.51
547 548 3.128589 TGACGCAAAACTGAAAGAAAGCT 59.871 39.130 0.00 0.00 37.43 3.74
548 549 3.438360 ACGCAAAACTGAAAGAAAGCTG 58.562 40.909 0.00 0.00 37.43 4.24
549 550 2.217167 CGCAAAACTGAAAGAAAGCTGC 59.783 45.455 0.00 0.00 37.43 5.25
550 551 3.189285 GCAAAACTGAAAGAAAGCTGCA 58.811 40.909 1.02 0.00 37.43 4.41
551 552 3.618150 GCAAAACTGAAAGAAAGCTGCAA 59.382 39.130 1.02 0.00 37.43 4.08
552 553 4.093261 GCAAAACTGAAAGAAAGCTGCAAA 59.907 37.500 1.02 0.00 37.43 3.68
553 554 5.220719 GCAAAACTGAAAGAAAGCTGCAAAT 60.221 36.000 1.02 0.00 37.43 2.32
554 555 6.416514 CAAAACTGAAAGAAAGCTGCAAATC 58.583 36.000 1.02 0.00 37.43 2.17
555 556 3.893720 ACTGAAAGAAAGCTGCAAATCG 58.106 40.909 1.02 0.00 37.43 3.34
674 675 0.544595 ACGCTACACCCTTCCCTCTT 60.545 55.000 0.00 0.00 0.00 2.85
871 873 2.456073 ACTAGATCGCCTAACCCTGT 57.544 50.000 0.00 0.00 0.00 4.00
1416 1422 2.355412 GGCGGGTGTAACTGAACCTTAT 60.355 50.000 0.00 0.00 36.64 1.73
1472 1478 0.753262 GAGTGCGGTATGATGGGACT 59.247 55.000 0.00 0.00 34.92 3.85
1532 1539 2.364002 CAAAATTTGAGTGGGGTCCGTT 59.636 45.455 0.00 0.00 0.00 4.44
1656 1669 4.021229 GGAGGGAAAATAATTTCGGTGGT 58.979 43.478 0.00 0.00 44.83 4.16
1668 1681 0.531090 TCGGTGGTCGTGGACAAAAG 60.531 55.000 0.00 0.00 40.32 2.27
1705 1718 3.498397 ACATGAGAACGTGGTGAATCAAC 59.502 43.478 0.00 0.00 37.35 3.18
1971 1987 2.224843 TGCTCAGCATTTTGAGGGAAGA 60.225 45.455 0.00 0.00 43.80 2.87
2123 2141 2.676076 CCGGAAGCAATGAAAACCTTG 58.324 47.619 0.00 0.00 0.00 3.61
2137 2155 0.478072 ACCTTGGCATGGAACTGTCA 59.522 50.000 24.70 0.00 0.00 3.58
2329 2348 5.626142 TGGTGGACTTGTGCTCTTTTATAA 58.374 37.500 0.00 0.00 0.00 0.98
2471 2490 1.188219 AGCACCTCTCGTGGACATGT 61.188 55.000 0.00 0.00 43.24 3.21
2522 2541 1.234821 CTTGGTTAGTGCTTGGCGAA 58.765 50.000 0.00 0.00 0.00 4.70
3115 3134 4.511454 TCTTGTTGAGAACTTGTTGGATCG 59.489 41.667 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.892130 TTTTAACTTTTCACATGGTGGTTTTAT 57.108 25.926 0.00 0.00 33.87 1.40
9 10 9.720769 TTTTTAACTTTTCACATGGTGGTTTTA 57.279 25.926 0.00 0.00 33.87 1.52
10 11 8.622948 TTTTTAACTTTTCACATGGTGGTTTT 57.377 26.923 0.00 0.00 33.87 2.43
11 12 8.097662 TCTTTTTAACTTTTCACATGGTGGTTT 58.902 29.630 0.00 0.00 33.87 3.27
12 13 7.547722 GTCTTTTTAACTTTTCACATGGTGGTT 59.452 33.333 0.00 0.00 33.87 3.67
13 14 7.039270 GTCTTTTTAACTTTTCACATGGTGGT 58.961 34.615 0.00 0.00 33.87 4.16
14 15 7.038659 TGTCTTTTTAACTTTTCACATGGTGG 58.961 34.615 0.00 0.00 33.87 4.61
15 16 7.222611 CCTGTCTTTTTAACTTTTCACATGGTG 59.777 37.037 0.00 0.00 34.45 4.17
16 17 7.264947 CCTGTCTTTTTAACTTTTCACATGGT 58.735 34.615 0.00 0.00 0.00 3.55
17 18 6.701400 CCCTGTCTTTTTAACTTTTCACATGG 59.299 38.462 0.00 0.00 0.00 3.66
18 19 7.264947 ACCCTGTCTTTTTAACTTTTCACATG 58.735 34.615 0.00 0.00 0.00 3.21
19 20 7.418337 ACCCTGTCTTTTTAACTTTTCACAT 57.582 32.000 0.00 0.00 0.00 3.21
20 21 6.844097 ACCCTGTCTTTTTAACTTTTCACA 57.156 33.333 0.00 0.00 0.00 3.58
21 22 8.542497 AAAACCCTGTCTTTTTAACTTTTCAC 57.458 30.769 0.00 0.00 0.00 3.18
22 23 8.590204 AGAAAACCCTGTCTTTTTAACTTTTCA 58.410 29.630 0.00 0.00 30.79 2.69
23 24 8.869897 CAGAAAACCCTGTCTTTTTAACTTTTC 58.130 33.333 0.00 0.00 0.00 2.29
24 25 8.590204 TCAGAAAACCCTGTCTTTTTAACTTTT 58.410 29.630 0.00 0.00 35.71 2.27
25 26 8.033038 GTCAGAAAACCCTGTCTTTTTAACTTT 58.967 33.333 0.00 0.00 35.71 2.66
26 27 7.177744 TGTCAGAAAACCCTGTCTTTTTAACTT 59.822 33.333 0.00 0.00 35.71 2.66
27 28 6.661805 TGTCAGAAAACCCTGTCTTTTTAACT 59.338 34.615 0.00 0.00 35.71 2.24
28 29 6.859017 TGTCAGAAAACCCTGTCTTTTTAAC 58.141 36.000 0.00 0.00 35.71 2.01
29 30 7.469537 TTGTCAGAAAACCCTGTCTTTTTAA 57.530 32.000 0.00 0.00 35.71 1.52
30 31 7.469537 TTTGTCAGAAAACCCTGTCTTTTTA 57.530 32.000 0.00 0.00 35.71 1.52
31 32 5.993748 TTGTCAGAAAACCCTGTCTTTTT 57.006 34.783 0.00 0.00 35.71 1.94
32 33 5.993748 TTTGTCAGAAAACCCTGTCTTTT 57.006 34.783 0.00 0.00 35.71 2.27
33 34 6.544928 AATTTGTCAGAAAACCCTGTCTTT 57.455 33.333 0.00 0.00 35.71 2.52
34 35 7.654022 TTAATTTGTCAGAAAACCCTGTCTT 57.346 32.000 0.00 0.00 35.71 3.01
35 36 7.654022 TTTAATTTGTCAGAAAACCCTGTCT 57.346 32.000 0.00 0.00 35.71 3.41
36 37 8.710835 TTTTTAATTTGTCAGAAAACCCTGTC 57.289 30.769 0.00 0.00 35.71 3.51
58 59 9.171877 TGACATTTTCAAGGCTTTATTGTTTTT 57.828 25.926 0.00 0.00 0.00 1.94
59 60 8.729805 TGACATTTTCAAGGCTTTATTGTTTT 57.270 26.923 0.00 0.00 0.00 2.43
60 61 8.729805 TTGACATTTTCAAGGCTTTATTGTTT 57.270 26.923 0.00 0.00 39.45 2.83
99 100 8.868916 GTTGTGAACATTTGTGTTAAAACTGAT 58.131 29.630 0.00 0.00 31.35 2.90
100 101 8.085296 AGTTGTGAACATTTGTGTTAAAACTGA 58.915 29.630 11.60 0.00 32.50 3.41
101 102 8.238481 AGTTGTGAACATTTGTGTTAAAACTG 57.762 30.769 11.60 0.00 32.50 3.16
102 103 7.544217 GGAGTTGTGAACATTTGTGTTAAAACT 59.456 33.333 11.96 11.96 34.45 2.66
103 104 7.201487 GGGAGTTGTGAACATTTGTGTTAAAAC 60.201 37.037 0.00 0.00 31.35 2.43
104 105 6.814146 GGGAGTTGTGAACATTTGTGTTAAAA 59.186 34.615 0.00 0.00 31.35 1.52
105 106 6.334202 GGGAGTTGTGAACATTTGTGTTAAA 58.666 36.000 0.00 0.00 31.35 1.52
106 107 5.163499 GGGGAGTTGTGAACATTTGTGTTAA 60.163 40.000 0.00 0.00 31.35 2.01
107 108 4.339814 GGGGAGTTGTGAACATTTGTGTTA 59.660 41.667 0.00 0.00 31.35 2.41
108 109 3.132111 GGGGAGTTGTGAACATTTGTGTT 59.868 43.478 0.00 0.00 34.29 3.32
109 110 2.693074 GGGGAGTTGTGAACATTTGTGT 59.307 45.455 0.00 0.00 0.00 3.72
110 111 2.958355 AGGGGAGTTGTGAACATTTGTG 59.042 45.455 0.00 0.00 0.00 3.33
111 112 3.117512 AGAGGGGAGTTGTGAACATTTGT 60.118 43.478 0.00 0.00 0.00 2.83
112 113 3.490348 AGAGGGGAGTTGTGAACATTTG 58.510 45.455 0.00 0.00 0.00 2.32
113 114 3.884037 AGAGGGGAGTTGTGAACATTT 57.116 42.857 0.00 0.00 0.00 2.32
114 115 3.498661 GGAAGAGGGGAGTTGTGAACATT 60.499 47.826 0.00 0.00 0.00 2.71
115 116 2.040412 GGAAGAGGGGAGTTGTGAACAT 59.960 50.000 0.00 0.00 0.00 2.71
116 117 1.420138 GGAAGAGGGGAGTTGTGAACA 59.580 52.381 0.00 0.00 0.00 3.18
117 118 1.608283 CGGAAGAGGGGAGTTGTGAAC 60.608 57.143 0.00 0.00 0.00 3.18
118 119 0.685097 CGGAAGAGGGGAGTTGTGAA 59.315 55.000 0.00 0.00 0.00 3.18
119 120 1.827399 GCGGAAGAGGGGAGTTGTGA 61.827 60.000 0.00 0.00 0.00 3.58
120 121 1.376037 GCGGAAGAGGGGAGTTGTG 60.376 63.158 0.00 0.00 0.00 3.33
121 122 2.593956 GGCGGAAGAGGGGAGTTGT 61.594 63.158 0.00 0.00 0.00 3.32
122 123 0.976073 TAGGCGGAAGAGGGGAGTTG 60.976 60.000 0.00 0.00 0.00 3.16
123 124 0.688087 CTAGGCGGAAGAGGGGAGTT 60.688 60.000 0.00 0.00 0.00 3.01
124 125 1.075896 CTAGGCGGAAGAGGGGAGT 60.076 63.158 0.00 0.00 0.00 3.85
125 126 1.075896 ACTAGGCGGAAGAGGGGAG 60.076 63.158 0.00 0.00 0.00 4.30
126 127 1.381327 CACTAGGCGGAAGAGGGGA 60.381 63.158 0.00 0.00 0.00 4.81
127 128 0.976073 TTCACTAGGCGGAAGAGGGG 60.976 60.000 0.00 0.00 0.00 4.79
128 129 0.902531 TTTCACTAGGCGGAAGAGGG 59.097 55.000 0.00 0.00 0.00 4.30
129 130 2.622436 CTTTTCACTAGGCGGAAGAGG 58.378 52.381 0.00 0.00 0.00 3.69
130 131 2.622436 CCTTTTCACTAGGCGGAAGAG 58.378 52.381 0.00 0.19 0.00 2.85
131 132 2.762535 CCTTTTCACTAGGCGGAAGA 57.237 50.000 0.00 0.00 0.00 2.87
142 143 2.333014 CGAGAGAGTGAGCCTTTTCAC 58.667 52.381 0.00 0.00 46.14 3.18
143 144 1.337260 GCGAGAGAGTGAGCCTTTTCA 60.337 52.381 0.00 0.00 0.00 2.69
144 145 1.337260 TGCGAGAGAGTGAGCCTTTTC 60.337 52.381 0.00 0.00 0.00 2.29
145 146 0.681733 TGCGAGAGAGTGAGCCTTTT 59.318 50.000 0.00 0.00 0.00 2.27
146 147 0.681733 TTGCGAGAGAGTGAGCCTTT 59.318 50.000 0.00 0.00 0.00 3.11
147 148 0.246086 CTTGCGAGAGAGTGAGCCTT 59.754 55.000 0.00 0.00 0.00 4.35
148 149 0.610509 TCTTGCGAGAGAGTGAGCCT 60.611 55.000 0.00 0.00 0.00 4.58
149 150 1.886585 TCTTGCGAGAGAGTGAGCC 59.113 57.895 0.00 0.00 0.00 4.70
162 163 0.944311 TCAAACTCGCGACCTCTTGC 60.944 55.000 3.71 0.00 0.00 4.01
163 164 1.497991 TTCAAACTCGCGACCTCTTG 58.502 50.000 3.71 6.55 0.00 3.02
164 165 1.865340 GTTTCAAACTCGCGACCTCTT 59.135 47.619 3.71 0.00 0.00 2.85
165 166 1.202486 TGTTTCAAACTCGCGACCTCT 60.202 47.619 3.71 0.00 0.00 3.69
166 167 1.214367 TGTTTCAAACTCGCGACCTC 58.786 50.000 3.71 0.00 0.00 3.85
167 168 1.798813 GATGTTTCAAACTCGCGACCT 59.201 47.619 3.71 0.00 0.00 3.85
168 169 1.136057 GGATGTTTCAAACTCGCGACC 60.136 52.381 3.71 0.00 0.00 4.79
169 170 1.798813 AGGATGTTTCAAACTCGCGAC 59.201 47.619 3.71 0.00 0.00 5.19
170 171 2.066262 GAGGATGTTTCAAACTCGCGA 58.934 47.619 9.26 9.26 0.00 5.87
171 172 1.128692 GGAGGATGTTTCAAACTCGCG 59.871 52.381 0.00 0.00 0.00 5.87
172 173 2.095718 GTGGAGGATGTTTCAAACTCGC 60.096 50.000 1.10 0.00 0.00 5.03
173 174 3.058914 GTGTGGAGGATGTTTCAAACTCG 60.059 47.826 1.10 0.00 0.00 4.18
174 175 3.058914 CGTGTGGAGGATGTTTCAAACTC 60.059 47.826 1.10 0.00 0.00 3.01
175 176 2.878406 CGTGTGGAGGATGTTTCAAACT 59.122 45.455 1.10 0.00 0.00 2.66
176 177 2.604614 GCGTGTGGAGGATGTTTCAAAC 60.605 50.000 0.00 0.00 0.00 2.93
177 178 1.606668 GCGTGTGGAGGATGTTTCAAA 59.393 47.619 0.00 0.00 0.00 2.69
178 179 1.234821 GCGTGTGGAGGATGTTTCAA 58.765 50.000 0.00 0.00 0.00 2.69
179 180 0.948623 CGCGTGTGGAGGATGTTTCA 60.949 55.000 0.00 0.00 0.00 2.69
180 181 0.949105 ACGCGTGTGGAGGATGTTTC 60.949 55.000 12.93 0.00 0.00 2.78
181 182 0.534203 AACGCGTGTGGAGGATGTTT 60.534 50.000 14.98 0.00 0.00 2.83
182 183 1.070786 AACGCGTGTGGAGGATGTT 59.929 52.632 14.98 0.00 0.00 2.71
183 184 1.667830 CAACGCGTGTGGAGGATGT 60.668 57.895 14.98 0.00 0.00 3.06
184 185 3.027170 GCAACGCGTGTGGAGGATG 62.027 63.158 14.98 5.59 0.00 3.51
185 186 2.742372 GCAACGCGTGTGGAGGAT 60.742 61.111 14.98 0.00 0.00 3.24
186 187 4.228567 TGCAACGCGTGTGGAGGA 62.229 61.111 14.98 0.00 0.00 3.71
187 188 4.012895 GTGCAACGCGTGTGGAGG 62.013 66.667 14.98 0.00 0.00 4.30
188 189 2.116736 AATGTGCAACGCGTGTGGAG 62.117 55.000 14.98 1.62 42.39 3.86
189 190 1.719725 AAATGTGCAACGCGTGTGGA 61.720 50.000 14.98 12.10 42.39 4.02
190 191 0.869454 AAAATGTGCAACGCGTGTGG 60.869 50.000 14.98 7.03 42.39 4.17
191 192 0.226734 CAAAATGTGCAACGCGTGTG 59.773 50.000 14.98 14.63 42.39 3.82
192 193 0.099613 TCAAAATGTGCAACGCGTGT 59.900 45.000 14.98 0.00 42.39 4.49
193 194 1.195347 TTCAAAATGTGCAACGCGTG 58.805 45.000 14.98 8.57 42.39 5.34
194 195 2.132740 ATTCAAAATGTGCAACGCGT 57.867 40.000 5.58 5.58 42.39 6.01
195 196 4.381270 TCTTTATTCAAAATGTGCAACGCG 59.619 37.500 3.53 3.53 42.39 6.01
196 197 5.820926 TCTTTATTCAAAATGTGCAACGC 57.179 34.783 0.00 0.00 42.39 4.84
197 198 9.146270 CTTTTTCTTTATTCAAAATGTGCAACG 57.854 29.630 0.00 0.00 42.39 4.10
222 223 9.354673 TGTTTCCTGATAAACTCTCATTTTTCT 57.645 29.630 0.00 0.00 39.57 2.52
223 224 9.965824 TTGTTTCCTGATAAACTCTCATTTTTC 57.034 29.630 0.00 0.00 39.57 2.29
224 225 9.750125 GTTGTTTCCTGATAAACTCTCATTTTT 57.250 29.630 0.00 0.00 39.57 1.94
225 226 8.912988 TGTTGTTTCCTGATAAACTCTCATTTT 58.087 29.630 0.00 0.00 39.57 1.82
226 227 8.463930 TGTTGTTTCCTGATAAACTCTCATTT 57.536 30.769 0.00 0.00 39.57 2.32
227 228 8.463930 TTGTTGTTTCCTGATAAACTCTCATT 57.536 30.769 0.00 0.00 39.57 2.57
228 229 8.352942 GTTTGTTGTTTCCTGATAAACTCTCAT 58.647 33.333 0.00 0.00 39.57 2.90
229 230 7.338196 TGTTTGTTGTTTCCTGATAAACTCTCA 59.662 33.333 0.00 0.00 39.57 3.27
230 231 7.703328 TGTTTGTTGTTTCCTGATAAACTCTC 58.297 34.615 0.00 0.00 39.57 3.20
231 232 7.639113 TGTTTGTTGTTTCCTGATAAACTCT 57.361 32.000 0.00 0.00 39.57 3.24
232 233 7.044314 CGTTGTTTGTTGTTTCCTGATAAACTC 60.044 37.037 0.00 0.00 39.57 3.01
233 234 6.750039 CGTTGTTTGTTGTTTCCTGATAAACT 59.250 34.615 0.00 0.00 39.57 2.66
234 235 6.748198 TCGTTGTTTGTTGTTTCCTGATAAAC 59.252 34.615 0.00 0.00 39.35 2.01
235 236 6.853720 TCGTTGTTTGTTGTTTCCTGATAAA 58.146 32.000 0.00 0.00 0.00 1.40
236 237 6.438259 TCGTTGTTTGTTGTTTCCTGATAA 57.562 33.333 0.00 0.00 0.00 1.75
237 238 6.259638 GTTCGTTGTTTGTTGTTTCCTGATA 58.740 36.000 0.00 0.00 0.00 2.15
238 239 4.974368 TCGTTGTTTGTTGTTTCCTGAT 57.026 36.364 0.00 0.00 0.00 2.90
239 240 4.477780 GTTCGTTGTTTGTTGTTTCCTGA 58.522 39.130 0.00 0.00 0.00 3.86
240 241 3.299542 CGTTCGTTGTTTGTTGTTTCCTG 59.700 43.478 0.00 0.00 0.00 3.86
241 242 3.494232 CGTTCGTTGTTTGTTGTTTCCT 58.506 40.909 0.00 0.00 0.00 3.36
242 243 2.027096 GCGTTCGTTGTTTGTTGTTTCC 59.973 45.455 0.00 0.00 0.00 3.13
243 244 2.027096 GGCGTTCGTTGTTTGTTGTTTC 59.973 45.455 0.00 0.00 0.00 2.78
244 245 1.987074 GGCGTTCGTTGTTTGTTGTTT 59.013 42.857 0.00 0.00 0.00 2.83
245 246 1.200484 AGGCGTTCGTTGTTTGTTGTT 59.800 42.857 0.00 0.00 0.00 2.83
246 247 0.806241 AGGCGTTCGTTGTTTGTTGT 59.194 45.000 0.00 0.00 0.00 3.32
247 248 1.843753 GAAGGCGTTCGTTGTTTGTTG 59.156 47.619 2.98 0.00 0.00 3.33
248 249 2.182904 GAAGGCGTTCGTTGTTTGTT 57.817 45.000 2.98 0.00 0.00 2.83
249 250 3.909957 GAAGGCGTTCGTTGTTTGT 57.090 47.368 2.98 0.00 0.00 2.83
264 265 1.501741 CCACGTTGAATGGCCGAAG 59.498 57.895 0.00 0.00 0.00 3.79
265 266 3.661911 CCACGTTGAATGGCCGAA 58.338 55.556 0.00 0.00 0.00 4.30
270 271 0.318614 GGTGTTGCCACGTTGAATGG 60.319 55.000 0.00 0.00 42.80 3.16
271 272 0.318614 GGGTGTTGCCACGTTGAATG 60.319 55.000 0.00 0.00 42.80 2.67
272 273 0.467290 AGGGTGTTGCCACGTTGAAT 60.467 50.000 0.00 0.00 42.80 2.57
273 274 0.681564 AAGGGTGTTGCCACGTTGAA 60.682 50.000 0.00 0.00 42.80 2.69
274 275 1.077357 AAGGGTGTTGCCACGTTGA 60.077 52.632 0.00 0.00 42.80 3.18
275 276 1.065600 CAAGGGTGTTGCCACGTTG 59.934 57.895 0.00 0.00 42.80 4.10
276 277 1.379309 ACAAGGGTGTTGCCACGTT 60.379 52.632 0.00 0.00 42.80 3.99
277 278 2.118404 CACAAGGGTGTTGCCACGT 61.118 57.895 0.00 0.00 42.80 4.49
278 279 2.721231 CACAAGGGTGTTGCCACG 59.279 61.111 0.00 0.00 42.80 4.94
287 288 1.385347 TGGGTCTGGACACAAGGGT 60.385 57.895 2.93 0.00 42.59 4.34
288 289 3.574952 TGGGTCTGGACACAAGGG 58.425 61.111 2.93 0.00 42.59 3.95
293 294 2.643551 CCATTACATGGGTCTGGACAC 58.356 52.381 0.00 0.00 46.86 3.67
313 314 3.076916 GCAAATGCCCTCACCCCC 61.077 66.667 0.00 0.00 34.31 5.40
323 324 3.056313 GAGCGACCCTGGCAAATGC 62.056 63.158 0.00 0.00 41.14 3.56
324 325 0.962356 AAGAGCGACCCTGGCAAATG 60.962 55.000 0.00 0.00 0.00 2.32
325 326 0.678048 GAAGAGCGACCCTGGCAAAT 60.678 55.000 0.00 0.00 0.00 2.32
326 327 1.302511 GAAGAGCGACCCTGGCAAA 60.303 57.895 0.00 0.00 0.00 3.68
327 328 0.902984 TAGAAGAGCGACCCTGGCAA 60.903 55.000 0.00 0.00 0.00 4.52
328 329 1.304962 TAGAAGAGCGACCCTGGCA 60.305 57.895 0.00 0.00 0.00 4.92
329 330 1.439644 CTAGAAGAGCGACCCTGGC 59.560 63.158 0.00 0.00 0.00 4.85
330 331 1.395826 CCCTAGAAGAGCGACCCTGG 61.396 65.000 0.00 0.00 0.00 4.45
331 332 0.395862 TCCCTAGAAGAGCGACCCTG 60.396 60.000 0.00 0.00 0.00 4.45
332 333 0.335361 TTCCCTAGAAGAGCGACCCT 59.665 55.000 0.00 0.00 0.00 4.34
333 334 0.460722 GTTCCCTAGAAGAGCGACCC 59.539 60.000 0.00 0.00 30.91 4.46
334 335 0.100861 CGTTCCCTAGAAGAGCGACC 59.899 60.000 11.68 0.00 39.94 4.79
335 336 0.810016 ACGTTCCCTAGAAGAGCGAC 59.190 55.000 20.13 1.17 39.94 5.19
336 337 1.201647 CAACGTTCCCTAGAAGAGCGA 59.798 52.381 20.13 0.00 39.94 4.93
337 338 1.630148 CAACGTTCCCTAGAAGAGCG 58.370 55.000 14.35 14.35 42.73 5.03
338 339 2.007547 GCCAACGTTCCCTAGAAGAGC 61.008 57.143 0.00 0.00 30.91 4.09
339 340 1.405661 GGCCAACGTTCCCTAGAAGAG 60.406 57.143 0.00 0.00 30.91 2.85
340 341 0.611714 GGCCAACGTTCCCTAGAAGA 59.388 55.000 0.00 0.00 30.91 2.87
341 342 0.323629 TGGCCAACGTTCCCTAGAAG 59.676 55.000 0.61 0.00 30.91 2.85
342 343 0.323629 CTGGCCAACGTTCCCTAGAA 59.676 55.000 7.01 0.00 0.00 2.10
343 344 0.834687 ACTGGCCAACGTTCCCTAGA 60.835 55.000 7.01 0.00 0.00 2.43
344 345 0.036306 AACTGGCCAACGTTCCCTAG 59.964 55.000 7.01 10.20 0.00 3.02
345 346 1.002315 GTAACTGGCCAACGTTCCCTA 59.998 52.381 13.27 0.00 0.00 3.53
346 347 0.250597 GTAACTGGCCAACGTTCCCT 60.251 55.000 13.27 0.00 0.00 4.20
347 348 0.250597 AGTAACTGGCCAACGTTCCC 60.251 55.000 13.27 2.29 0.00 3.97
348 349 2.460757 TAGTAACTGGCCAACGTTCC 57.539 50.000 13.27 3.16 0.00 3.62
349 350 5.366829 AAAATAGTAACTGGCCAACGTTC 57.633 39.130 13.27 6.46 0.00 3.95
350 351 5.068067 ACAAAAATAGTAACTGGCCAACGTT 59.932 36.000 7.01 11.50 0.00 3.99
351 352 4.581409 ACAAAAATAGTAACTGGCCAACGT 59.419 37.500 7.01 0.00 0.00 3.99
352 353 5.116069 ACAAAAATAGTAACTGGCCAACG 57.884 39.130 7.01 0.00 0.00 4.10
353 354 7.654568 AGTAACAAAAATAGTAACTGGCCAAC 58.345 34.615 7.01 1.46 0.00 3.77
354 355 7.826918 AGTAACAAAAATAGTAACTGGCCAA 57.173 32.000 7.01 0.00 0.00 4.52
355 356 7.826918 AAGTAACAAAAATAGTAACTGGCCA 57.173 32.000 4.71 4.71 0.00 5.36
356 357 9.537192 AAAAAGTAACAAAAATAGTAACTGGCC 57.463 29.630 0.00 0.00 0.00 5.36
383 384 9.472361 GGATAGTAGATTATGTGCGAAAAGTAA 57.528 33.333 0.00 0.00 0.00 2.24
384 385 8.086522 GGGATAGTAGATTATGTGCGAAAAGTA 58.913 37.037 0.00 0.00 0.00 2.24
385 386 6.929606 GGGATAGTAGATTATGTGCGAAAAGT 59.070 38.462 0.00 0.00 0.00 2.66
386 387 6.369065 GGGGATAGTAGATTATGTGCGAAAAG 59.631 42.308 0.00 0.00 0.00 2.27
387 388 6.183361 TGGGGATAGTAGATTATGTGCGAAAA 60.183 38.462 0.00 0.00 0.00 2.29
388 389 5.305902 TGGGGATAGTAGATTATGTGCGAAA 59.694 40.000 0.00 0.00 0.00 3.46
389 390 4.836175 TGGGGATAGTAGATTATGTGCGAA 59.164 41.667 0.00 0.00 0.00 4.70
390 391 4.412843 TGGGGATAGTAGATTATGTGCGA 58.587 43.478 0.00 0.00 0.00 5.10
391 392 4.801330 TGGGGATAGTAGATTATGTGCG 57.199 45.455 0.00 0.00 0.00 5.34
392 393 9.167311 CTTTTATGGGGATAGTAGATTATGTGC 57.833 37.037 0.00 0.00 0.00 4.57
399 400 9.676129 TCTCTTTCTTTTATGGGGATAGTAGAT 57.324 33.333 0.00 0.00 0.00 1.98
400 401 9.148879 CTCTCTTTCTTTTATGGGGATAGTAGA 57.851 37.037 0.00 0.00 0.00 2.59
401 402 9.148879 TCTCTCTTTCTTTTATGGGGATAGTAG 57.851 37.037 0.00 0.00 0.00 2.57
402 403 9.502035 TTCTCTCTTTCTTTTATGGGGATAGTA 57.498 33.333 0.00 0.00 0.00 1.82
403 404 7.996758 TCTCTCTTTCTTTTATGGGGATAGT 57.003 36.000 0.00 0.00 0.00 2.12
404 405 7.439655 CGTTCTCTCTTTCTTTTATGGGGATAG 59.560 40.741 0.00 0.00 0.00 2.08
405 406 7.272978 CGTTCTCTCTTTCTTTTATGGGGATA 58.727 38.462 0.00 0.00 0.00 2.59
406 407 6.116126 CGTTCTCTCTTTCTTTTATGGGGAT 58.884 40.000 0.00 0.00 0.00 3.85
407 408 5.488341 CGTTCTCTCTTTCTTTTATGGGGA 58.512 41.667 0.00 0.00 0.00 4.81
408 409 4.636206 CCGTTCTCTCTTTCTTTTATGGGG 59.364 45.833 0.00 0.00 0.00 4.96
409 410 5.488341 TCCGTTCTCTCTTTCTTTTATGGG 58.512 41.667 0.00 0.00 0.00 4.00
410 411 6.398918 TCTCCGTTCTCTCTTTCTTTTATGG 58.601 40.000 0.00 0.00 0.00 2.74
411 412 7.148557 GGTTCTCCGTTCTCTCTTTCTTTTATG 60.149 40.741 0.00 0.00 0.00 1.90
412 413 6.874664 GGTTCTCCGTTCTCTCTTTCTTTTAT 59.125 38.462 0.00 0.00 0.00 1.40
413 414 6.183360 TGGTTCTCCGTTCTCTCTTTCTTTTA 60.183 38.462 0.00 0.00 36.30 1.52
414 415 5.057819 GGTTCTCCGTTCTCTCTTTCTTTT 58.942 41.667 0.00 0.00 0.00 2.27
415 416 4.101119 TGGTTCTCCGTTCTCTCTTTCTTT 59.899 41.667 0.00 0.00 36.30 2.52
416 417 3.641906 TGGTTCTCCGTTCTCTCTTTCTT 59.358 43.478 0.00 0.00 36.30 2.52
417 418 3.231818 TGGTTCTCCGTTCTCTCTTTCT 58.768 45.455 0.00 0.00 36.30 2.52
418 419 3.662247 TGGTTCTCCGTTCTCTCTTTC 57.338 47.619 0.00 0.00 36.30 2.62
419 420 4.127907 GTTTGGTTCTCCGTTCTCTCTTT 58.872 43.478 0.00 0.00 36.30 2.52
420 421 3.134081 TGTTTGGTTCTCCGTTCTCTCTT 59.866 43.478 0.00 0.00 36.30 2.85
421 422 2.698797 TGTTTGGTTCTCCGTTCTCTCT 59.301 45.455 0.00 0.00 36.30 3.10
422 423 3.107642 TGTTTGGTTCTCCGTTCTCTC 57.892 47.619 0.00 0.00 36.30 3.20
423 424 3.553828 TTGTTTGGTTCTCCGTTCTCT 57.446 42.857 0.00 0.00 36.30 3.10
424 425 3.813166 TGATTGTTTGGTTCTCCGTTCTC 59.187 43.478 0.00 0.00 36.30 2.87
425 426 3.815809 TGATTGTTTGGTTCTCCGTTCT 58.184 40.909 0.00 0.00 36.30 3.01
426 427 4.561735 TTGATTGTTTGGTTCTCCGTTC 57.438 40.909 0.00 0.00 36.30 3.95
427 428 4.993029 TTTGATTGTTTGGTTCTCCGTT 57.007 36.364 0.00 0.00 36.30 4.44
428 429 5.068460 TGAATTTGATTGTTTGGTTCTCCGT 59.932 36.000 0.00 0.00 36.30 4.69
429 430 5.527951 TGAATTTGATTGTTTGGTTCTCCG 58.472 37.500 0.00 0.00 36.30 4.63
430 431 6.591448 GGATGAATTTGATTGTTTGGTTCTCC 59.409 38.462 0.00 0.00 0.00 3.71
431 432 7.153985 TGGATGAATTTGATTGTTTGGTTCTC 58.846 34.615 0.00 0.00 0.00 2.87
432 433 7.065120 TGGATGAATTTGATTGTTTGGTTCT 57.935 32.000 0.00 0.00 0.00 3.01
433 434 7.603404 TGATGGATGAATTTGATTGTTTGGTTC 59.397 33.333 0.00 0.00 0.00 3.62
434 435 7.451732 TGATGGATGAATTTGATTGTTTGGTT 58.548 30.769 0.00 0.00 0.00 3.67
435 436 7.006865 TGATGGATGAATTTGATTGTTTGGT 57.993 32.000 0.00 0.00 0.00 3.67
436 437 7.388224 TGTTGATGGATGAATTTGATTGTTTGG 59.612 33.333 0.00 0.00 0.00 3.28
437 438 8.312896 TGTTGATGGATGAATTTGATTGTTTG 57.687 30.769 0.00 0.00 0.00 2.93
438 439 8.905660 TTGTTGATGGATGAATTTGATTGTTT 57.094 26.923 0.00 0.00 0.00 2.83
439 440 8.369424 TCTTGTTGATGGATGAATTTGATTGTT 58.631 29.630 0.00 0.00 0.00 2.83
440 441 7.898918 TCTTGTTGATGGATGAATTTGATTGT 58.101 30.769 0.00 0.00 0.00 2.71
441 442 8.942338 ATCTTGTTGATGGATGAATTTGATTG 57.058 30.769 0.00 0.00 33.43 2.67
442 443 8.978472 AGATCTTGTTGATGGATGAATTTGATT 58.022 29.630 0.00 0.00 35.14 2.57
443 444 8.534954 AGATCTTGTTGATGGATGAATTTGAT 57.465 30.769 0.00 0.00 35.14 2.57
444 445 7.949690 AGATCTTGTTGATGGATGAATTTGA 57.050 32.000 0.00 0.00 35.14 2.69
447 448 9.636789 TCATTAGATCTTGTTGATGGATGAATT 57.363 29.630 0.00 0.00 35.14 2.17
448 449 9.809395 ATCATTAGATCTTGTTGATGGATGAAT 57.191 29.630 0.00 0.00 35.14 2.57
450 451 9.716531 GTATCATTAGATCTTGTTGATGGATGA 57.283 33.333 18.03 8.70 35.14 2.92
451 452 9.722184 AGTATCATTAGATCTTGTTGATGGATG 57.278 33.333 18.03 5.04 35.14 3.51
471 472 9.529325 CGTTAAACATCAGAGGATTAAGTATCA 57.471 33.333 0.00 0.00 34.77 2.15
472 473 8.488764 GCGTTAAACATCAGAGGATTAAGTATC 58.511 37.037 0.00 0.00 0.00 2.24
473 474 7.985184 TGCGTTAAACATCAGAGGATTAAGTAT 59.015 33.333 0.00 0.00 0.00 2.12
474 475 7.324935 TGCGTTAAACATCAGAGGATTAAGTA 58.675 34.615 0.00 0.00 0.00 2.24
475 476 6.170506 TGCGTTAAACATCAGAGGATTAAGT 58.829 36.000 0.00 0.00 0.00 2.24
476 477 6.662414 TGCGTTAAACATCAGAGGATTAAG 57.338 37.500 0.00 0.00 0.00 1.85
477 478 7.302524 GTTTGCGTTAAACATCAGAGGATTAA 58.697 34.615 11.03 0.00 46.29 1.40
478 479 6.837992 GTTTGCGTTAAACATCAGAGGATTA 58.162 36.000 11.03 0.00 46.29 1.75
479 480 5.699839 GTTTGCGTTAAACATCAGAGGATT 58.300 37.500 11.03 0.00 46.29 3.01
480 481 5.296813 GTTTGCGTTAAACATCAGAGGAT 57.703 39.130 11.03 0.00 46.29 3.24
481 482 4.742438 GTTTGCGTTAAACATCAGAGGA 57.258 40.909 11.03 0.00 46.29 3.71
491 492 1.918609 GCGTGGTTTGTTTGCGTTAAA 59.081 42.857 0.00 0.00 0.00 1.52
492 493 1.135489 TGCGTGGTTTGTTTGCGTTAA 60.135 42.857 0.00 0.00 0.00 2.01
493 494 0.450583 TGCGTGGTTTGTTTGCGTTA 59.549 45.000 0.00 0.00 0.00 3.18
494 495 0.179124 ATGCGTGGTTTGTTTGCGTT 60.179 45.000 0.00 0.00 0.00 4.84
495 496 0.179124 AATGCGTGGTTTGTTTGCGT 60.179 45.000 0.00 0.00 0.00 5.24
496 497 1.713404 CTAATGCGTGGTTTGTTTGCG 59.287 47.619 0.00 0.00 0.00 4.85
497 498 2.058057 CCTAATGCGTGGTTTGTTTGC 58.942 47.619 0.00 0.00 0.00 3.68
498 499 2.035321 ACCCTAATGCGTGGTTTGTTTG 59.965 45.455 0.00 0.00 0.00 2.93
499 500 2.312390 ACCCTAATGCGTGGTTTGTTT 58.688 42.857 0.00 0.00 0.00 2.83
500 501 1.989706 ACCCTAATGCGTGGTTTGTT 58.010 45.000 0.00 0.00 0.00 2.83
501 502 1.989706 AACCCTAATGCGTGGTTTGT 58.010 45.000 0.00 0.00 39.28 2.83
504 505 2.871453 AGAAAACCCTAATGCGTGGTT 58.129 42.857 0.00 0.00 44.04 3.67
505 506 2.556622 CAAGAAAACCCTAATGCGTGGT 59.443 45.455 0.00 0.00 0.00 4.16
506 507 2.817258 TCAAGAAAACCCTAATGCGTGG 59.183 45.455 0.00 0.00 0.00 4.94
507 508 3.666902 CGTCAAGAAAACCCTAATGCGTG 60.667 47.826 0.00 0.00 0.00 5.34
508 509 2.482721 CGTCAAGAAAACCCTAATGCGT 59.517 45.455 0.00 0.00 0.00 5.24
509 510 2.727916 GCGTCAAGAAAACCCTAATGCG 60.728 50.000 0.00 0.00 0.00 4.73
510 511 2.227865 TGCGTCAAGAAAACCCTAATGC 59.772 45.455 0.00 0.00 0.00 3.56
511 512 4.497473 TTGCGTCAAGAAAACCCTAATG 57.503 40.909 0.00 0.00 0.00 1.90
512 513 5.068591 AGTTTTGCGTCAAGAAAACCCTAAT 59.931 36.000 0.00 0.00 41.15 1.73
513 514 4.399934 AGTTTTGCGTCAAGAAAACCCTAA 59.600 37.500 0.00 0.00 41.15 2.69
514 515 3.949113 AGTTTTGCGTCAAGAAAACCCTA 59.051 39.130 0.00 0.00 41.15 3.53
515 516 2.758423 AGTTTTGCGTCAAGAAAACCCT 59.242 40.909 0.00 0.00 41.15 4.34
516 517 2.857748 CAGTTTTGCGTCAAGAAAACCC 59.142 45.455 0.00 0.00 41.15 4.11
517 518 3.765026 TCAGTTTTGCGTCAAGAAAACC 58.235 40.909 0.00 0.00 41.15 3.27
518 519 5.571357 TCTTTCAGTTTTGCGTCAAGAAAAC 59.429 36.000 0.00 0.00 40.74 2.43
519 520 5.704888 TCTTTCAGTTTTGCGTCAAGAAAA 58.295 33.333 0.00 0.00 0.00 2.29
520 521 5.303747 TCTTTCAGTTTTGCGTCAAGAAA 57.696 34.783 0.00 0.00 0.00 2.52
521 522 4.955925 TCTTTCAGTTTTGCGTCAAGAA 57.044 36.364 0.00 0.00 0.00 2.52
522 523 4.955925 TTCTTTCAGTTTTGCGTCAAGA 57.044 36.364 0.00 0.00 0.00 3.02
523 524 4.027377 GCTTTCTTTCAGTTTTGCGTCAAG 60.027 41.667 0.00 0.00 0.00 3.02
524 525 3.857093 GCTTTCTTTCAGTTTTGCGTCAA 59.143 39.130 0.00 0.00 0.00 3.18
525 526 3.128589 AGCTTTCTTTCAGTTTTGCGTCA 59.871 39.130 0.00 0.00 0.00 4.35
526 527 3.483558 CAGCTTTCTTTCAGTTTTGCGTC 59.516 43.478 0.00 0.00 0.00 5.19
527 528 3.438360 CAGCTTTCTTTCAGTTTTGCGT 58.562 40.909 0.00 0.00 0.00 5.24
528 529 2.217167 GCAGCTTTCTTTCAGTTTTGCG 59.783 45.455 0.00 0.00 0.00 4.85
529 530 3.189285 TGCAGCTTTCTTTCAGTTTTGC 58.811 40.909 0.00 0.00 0.00 3.68
530 531 5.783100 TTTGCAGCTTTCTTTCAGTTTTG 57.217 34.783 0.00 0.00 0.00 2.44
531 532 5.232838 CGATTTGCAGCTTTCTTTCAGTTTT 59.767 36.000 0.00 0.00 0.00 2.43
532 533 4.741676 CGATTTGCAGCTTTCTTTCAGTTT 59.258 37.500 0.00 0.00 0.00 2.66
533 534 4.293415 CGATTTGCAGCTTTCTTTCAGTT 58.707 39.130 0.00 0.00 0.00 3.16
534 535 3.304928 CCGATTTGCAGCTTTCTTTCAGT 60.305 43.478 0.00 0.00 0.00 3.41
535 536 3.240069 CCGATTTGCAGCTTTCTTTCAG 58.760 45.455 0.00 0.00 0.00 3.02
536 537 2.622942 ACCGATTTGCAGCTTTCTTTCA 59.377 40.909 0.00 0.00 0.00 2.69
537 538 3.237628 GACCGATTTGCAGCTTTCTTTC 58.762 45.455 0.00 0.00 0.00 2.62
538 539 2.029918 GGACCGATTTGCAGCTTTCTTT 60.030 45.455 0.00 0.00 0.00 2.52
539 540 1.541588 GGACCGATTTGCAGCTTTCTT 59.458 47.619 0.00 0.00 0.00 2.52
540 541 1.168714 GGACCGATTTGCAGCTTTCT 58.831 50.000 0.00 0.00 0.00 2.52
541 542 0.171231 GGGACCGATTTGCAGCTTTC 59.829 55.000 0.00 0.00 0.00 2.62
542 543 1.250840 GGGGACCGATTTGCAGCTTT 61.251 55.000 0.00 0.00 40.86 3.51
543 544 1.678970 GGGGACCGATTTGCAGCTT 60.679 57.895 0.00 0.00 40.86 3.74
544 545 2.044946 GGGGACCGATTTGCAGCT 60.045 61.111 0.00 0.00 40.86 4.24
641 642 0.632835 TAGCGTAGGGGAGAAGGGAA 59.367 55.000 0.00 0.00 0.00 3.97
674 675 2.115910 CCTGGTTCAGCCCAAGCA 59.884 61.111 0.00 0.00 43.56 3.91
871 873 6.069440 ACCAAATCATCAAGTTCATCCTCCTA 60.069 38.462 0.00 0.00 0.00 2.94
1390 1396 2.033602 AGTTACACCCGCCTTGGC 59.966 61.111 0.75 0.75 35.87 4.52
1472 1478 4.352893 TGATCCACACTCTTCATACCAGA 58.647 43.478 0.00 0.00 0.00 3.86
1532 1539 4.163078 CCCCTCTTCTAGAAGCAAGAATGA 59.837 45.833 25.04 7.05 38.28 2.57
1656 1669 0.821711 CCCTTGGCTTTTGTCCACGA 60.822 55.000 0.00 0.00 32.45 4.35
1668 1681 0.883833 CATGTTCTGTGTCCCTTGGC 59.116 55.000 0.00 0.00 0.00 4.52
1705 1718 1.607467 CCAAAACAGGGGCCTCAGG 60.607 63.158 4.79 0.00 0.00 3.86
1930 1946 5.509498 AGCAATCACAACTGTATTACCCAT 58.491 37.500 0.00 0.00 0.00 4.00
1971 1987 2.057922 TCAACCAAGGCCTCTTCTTCT 58.942 47.619 5.23 0.00 0.00 2.85
2013 2029 4.457257 CCTTTTAGCTTCTTCCTGTTCAGG 59.543 45.833 12.20 12.20 0.00 3.86
2123 2141 1.838112 TTCCATGACAGTTCCATGCC 58.162 50.000 0.00 0.00 39.89 4.40
2137 2155 2.550978 CCGTAGACGAAAGCATTCCAT 58.449 47.619 3.07 0.00 43.02 3.41
2471 2490 7.431960 GCATTGTTATTATGAAGATCACGCAAA 59.568 33.333 0.00 0.00 0.00 3.68
2961 2980 2.501316 TCTCTCGATCCCATTCAAGCAA 59.499 45.455 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.