Multiple sequence alignment - TraesCS3A01G171600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G171600 chr3A 100.000 8814 0 0 1 8814 186051141 186042328 0.000000e+00 16277
1 TraesCS3A01G171600 chr3A 97.753 89 2 0 7042 7130 186044000 186043912 4.260000e-33 154
2 TraesCS3A01G171600 chr3A 97.753 89 2 0 7142 7230 186044100 186044012 4.260000e-33 154
3 TraesCS3A01G171600 chr3A 80.693 202 28 7 3367 3557 385525550 385525751 7.130000e-31 147
4 TraesCS3A01G171600 chr3B 93.783 3378 125 32 512 3840 236513468 236510127 0.000000e+00 4996
5 TraesCS3A01G171600 chr3B 96.192 1418 44 8 5618 7031 236500692 236499281 0.000000e+00 2311
6 TraesCS3A01G171600 chr3B 95.502 1045 39 5 3859 4898 236509955 236508914 0.000000e+00 1663
7 TraesCS3A01G171600 chr3B 96.674 902 28 2 7138 8038 236499226 236498326 0.000000e+00 1498
8 TraesCS3A01G171600 chr3B 92.901 648 21 10 8168 8814 236498256 236497633 0.000000e+00 918
9 TraesCS3A01G171600 chr3B 93.177 513 22 6 4840 5340 236508918 236508407 0.000000e+00 741
10 TraesCS3A01G171600 chr3B 88.644 317 22 9 1 307 236514103 236513791 3.000000e-99 374
11 TraesCS3A01G171600 chr3B 88.612 281 10 3 5340 5619 236508279 236508020 1.100000e-83 322
12 TraesCS3A01G171600 chr3B 81.452 248 36 6 3370 3613 720983980 720984221 2.510000e-45 195
13 TraesCS3A01G171600 chr3B 93.258 89 6 0 7042 7130 236499222 236499134 2.000000e-26 132
14 TraesCS3A01G171600 chr3D 97.344 1694 40 5 5340 7031 159791505 159789815 0.000000e+00 2874
15 TraesCS3A01G171600 chr3D 94.077 1891 65 6 1597 3478 159796551 159794699 0.000000e+00 2828
16 TraesCS3A01G171600 chr3D 96.986 1526 40 4 3819 5340 159793156 159791633 0.000000e+00 2558
17 TraesCS3A01G171600 chr3D 94.055 1682 42 16 7138 8814 159789597 159787969 0.000000e+00 2499
18 TraesCS3A01G171600 chr3D 92.864 1079 25 15 546 1599 159797634 159796583 0.000000e+00 1519
19 TraesCS3A01G171600 chr3D 95.584 385 13 3 3440 3824 159794678 159794298 1.630000e-171 614
20 TraesCS3A01G171600 chr3D 85.714 133 16 3 355 485 150798977 150798846 4.290000e-28 137
21 TraesCS3A01G171600 chr3D 94.382 89 5 0 7042 7130 159789593 159789505 4.290000e-28 137
22 TraesCS3A01G171600 chr3D 83.186 113 18 1 3365 3476 335667503 335667391 1.570000e-17 102
23 TraesCS3A01G171600 chr6D 86.389 720 74 17 2548 3256 14167077 14167783 0.000000e+00 765
24 TraesCS3A01G171600 chr6D 83.912 777 92 19 1790 2547 14166126 14166888 0.000000e+00 712
25 TraesCS3A01G171600 chr5A 85.603 257 30 3 3369 3618 410513093 410512837 6.790000e-66 263
26 TraesCS3A01G171600 chr5A 80.469 256 37 11 3367 3621 419686815 419687058 5.430000e-42 183
27 TraesCS3A01G171600 chr5D 83.462 260 33 6 3369 3618 315936232 315935973 5.320000e-57 233
28 TraesCS3A01G171600 chr5D 80.469 256 38 9 3367 3621 322959874 322960118 1.510000e-42 185
29 TraesCS3A01G171600 chr5D 85.811 148 21 0 3474 3621 395733718 395733865 3.290000e-34 158
30 TraesCS3A01G171600 chr7A 94.595 148 8 0 338 485 66252371 66252518 6.880000e-56 230
31 TraesCS3A01G171600 chr4A 83.142 261 34 6 3370 3620 312683427 312683167 6.880000e-56 230
32 TraesCS3A01G171600 chr4B 82.375 261 36 6 3370 3620 317763289 317763549 1.490000e-52 219
33 TraesCS3A01G171600 chr7D 80.392 255 39 9 3367 3620 365319653 365319897 5.430000e-42 183
34 TraesCS3A01G171600 chr7B 80.159 252 38 10 3370 3620 321339487 321339247 2.530000e-40 178
35 TraesCS3A01G171600 chr4D 88.652 141 16 0 345 485 393641626 393641766 1.180000e-38 172
36 TraesCS3A01G171600 chr4D 89.313 131 14 0 355 485 449981339 449981209 1.970000e-36 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G171600 chr3A 186042328 186051141 8813 True 16277.000000 16277 100.000000 1 8814 1 chr3A.!!$R1 8813
1 TraesCS3A01G171600 chr3B 236508020 236514103 6083 True 1619.200000 4996 91.943600 1 5619 5 chr3B.!!$R2 5618
2 TraesCS3A01G171600 chr3B 236497633 236500692 3059 True 1214.750000 2311 94.756250 5618 8814 4 chr3B.!!$R1 3196
3 TraesCS3A01G171600 chr3D 159787969 159797634 9665 True 1861.285714 2874 95.041714 546 8814 7 chr3D.!!$R3 8268
4 TraesCS3A01G171600 chr6D 14166126 14167783 1657 False 738.500000 765 85.150500 1790 3256 2 chr6D.!!$F1 1466

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
385 396 0.105778 CTCCCGCTCCCTGAAATCTC 59.894 60.000 0.00 0.00 0.00 2.75 F
1455 1655 0.038166 ATGAACCGTGCCTTGGATGT 59.962 50.000 0.00 0.00 0.00 3.06 F
1933 2181 1.200948 GCAGGACTGTTTGAAGATGCC 59.799 52.381 0.82 0.00 0.00 4.40 F
3032 3487 1.282157 GCTCCCCACACTGGAAATAGT 59.718 52.381 0.00 0.00 40.96 2.12 F
4192 5946 2.439507 ACGGGTATTCCATCTGCAGAAT 59.560 45.455 22.50 12.19 36.67 2.40 F
5140 6965 1.308216 CCCTCTCCATGGAAGGGGT 60.308 63.158 33.56 0.00 39.14 4.95 F
5842 7796 0.834687 TTCCTCGCCCCACAAGTACT 60.835 55.000 0.00 0.00 0.00 2.73 F
7090 9047 1.729586 TGAGTGACTAGGCTTTGGGT 58.270 50.000 0.00 0.00 0.00 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1506 1706 1.072331 GAGCCTTTGACACAGAAGGGA 59.928 52.381 6.55 0.00 42.16 4.20 R
3368 3827 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73 R
3738 4262 4.993705 TTTGGAAGACAGTAGATTGGGT 57.006 40.909 0.00 0.00 0.00 4.51 R
4472 6228 0.321653 GAGGCGCCTTCTTCTTTCCA 60.322 55.000 33.34 0.00 0.00 3.53 R
5465 7418 1.198867 TCAAATGTATTGCGCTTGCGT 59.801 42.857 16.38 0.00 43.34 5.24 R
7071 9028 1.729586 ACCCAAAGCCTAGTCACTCA 58.270 50.000 0.00 0.00 0.00 3.41 R
7636 9708 0.804933 GCGGTGTCGGTACAGATTCC 60.805 60.000 0.00 4.45 35.91 3.01 R
8048 10120 0.395173 AAAAGGTCCAACACACGCCT 60.395 50.000 0.00 0.00 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 69 3.883489 ACACGAGGGGAAAAGAAAAGAAG 59.117 43.478 0.00 0.00 0.00 2.85
69 71 4.762251 CACGAGGGGAAAAGAAAAGAAGAT 59.238 41.667 0.00 0.00 0.00 2.40
71 73 5.938710 ACGAGGGGAAAAGAAAAGAAGATAC 59.061 40.000 0.00 0.00 0.00 2.24
72 74 6.174049 CGAGGGGAAAAGAAAAGAAGATACT 58.826 40.000 0.00 0.00 0.00 2.12
74 76 7.175119 CGAGGGGAAAAGAAAAGAAGATACTTT 59.825 37.037 0.00 0.00 41.09 2.66
75 77 9.516546 GAGGGGAAAAGAAAAGAAGATACTTTA 57.483 33.333 0.00 0.00 38.86 1.85
76 78 9.298250 AGGGGAAAAGAAAAGAAGATACTTTAC 57.702 33.333 0.00 0.00 38.86 2.01
77 79 9.074576 GGGGAAAAGAAAAGAAGATACTTTACA 57.925 33.333 0.00 0.00 38.86 2.41
81 83 9.914131 AAAAGAAAAGAAGATACTTTACATGGC 57.086 29.630 0.00 0.00 38.86 4.40
82 84 8.635765 AAGAAAAGAAGATACTTTACATGGCA 57.364 30.769 0.00 0.00 38.86 4.92
83 85 8.814038 AGAAAAGAAGATACTTTACATGGCAT 57.186 30.769 0.00 0.00 38.86 4.40
84 86 8.680903 AGAAAAGAAGATACTTTACATGGCATG 58.319 33.333 25.31 25.31 38.86 4.06
85 87 6.382869 AAGAAGATACTTTACATGGCATGC 57.617 37.500 26.70 9.90 0.00 4.06
86 88 5.439721 AGAAGATACTTTACATGGCATGCA 58.560 37.500 26.70 12.32 0.00 3.96
117 128 1.037030 ACCCGGATTTGATGCGCATT 61.037 50.000 26.12 8.43 43.11 3.56
154 165 1.227263 CCTACCGGGCATCGTCTTG 60.227 63.158 6.32 0.00 37.11 3.02
155 166 1.883084 CTACCGGGCATCGTCTTGC 60.883 63.158 6.32 0.19 42.01 4.01
162 173 1.503542 GCATCGTCTTGCCTTGTGG 59.496 57.895 0.00 0.00 36.60 4.17
163 174 1.926511 GCATCGTCTTGCCTTGTGGG 61.927 60.000 0.00 0.00 36.60 4.61
165 176 1.779061 ATCGTCTTGCCTTGTGGGGT 61.779 55.000 0.00 0.00 35.12 4.95
166 177 1.122632 TCGTCTTGCCTTGTGGGGTA 61.123 55.000 0.00 0.00 35.12 3.69
167 178 0.250553 CGTCTTGCCTTGTGGGGTAA 60.251 55.000 0.00 0.00 35.12 2.85
184 195 4.227982 GGGGTAATGGGGTTAAAGTAGACA 59.772 45.833 0.00 0.00 0.00 3.41
199 210 4.856509 AGTAGACAGCTGGTAGTGTATGA 58.143 43.478 19.93 0.00 0.00 2.15
203 214 5.450453 AGACAGCTGGTAGTGTATGAGTAT 58.550 41.667 19.93 0.00 0.00 2.12
274 285 1.389609 CGCTAGGAAGCCTAACCGGA 61.390 60.000 9.46 0.00 46.68 5.14
280 291 1.900545 GAAGCCTAACCGGAGCACCT 61.901 60.000 9.46 0.00 33.16 4.00
307 318 3.436496 CCTCCAAATACTCGTCGTCTTC 58.564 50.000 0.00 0.00 0.00 2.87
308 319 3.128938 CCTCCAAATACTCGTCGTCTTCT 59.871 47.826 0.00 0.00 0.00 2.85
309 320 4.380655 CCTCCAAATACTCGTCGTCTTCTT 60.381 45.833 0.00 0.00 0.00 2.52
310 321 5.130292 TCCAAATACTCGTCGTCTTCTTT 57.870 39.130 0.00 0.00 0.00 2.52
311 322 4.921515 TCCAAATACTCGTCGTCTTCTTTG 59.078 41.667 0.00 0.00 0.00 2.77
312 323 4.091509 CCAAATACTCGTCGTCTTCTTTGG 59.908 45.833 11.58 11.58 36.51 3.28
313 324 3.505464 ATACTCGTCGTCTTCTTTGGG 57.495 47.619 0.00 0.00 0.00 4.12
314 325 1.325355 ACTCGTCGTCTTCTTTGGGA 58.675 50.000 0.00 0.00 0.00 4.37
315 326 1.269998 ACTCGTCGTCTTCTTTGGGAG 59.730 52.381 0.00 0.00 0.00 4.30
316 327 1.269998 CTCGTCGTCTTCTTTGGGAGT 59.730 52.381 0.00 0.00 0.00 3.85
317 328 2.486982 CTCGTCGTCTTCTTTGGGAGTA 59.513 50.000 0.00 0.00 0.00 2.59
318 329 2.886523 TCGTCGTCTTCTTTGGGAGTAA 59.113 45.455 0.00 0.00 0.00 2.24
319 330 3.057736 TCGTCGTCTTCTTTGGGAGTAAG 60.058 47.826 0.00 0.00 0.00 2.34
320 331 3.305199 CGTCGTCTTCTTTGGGAGTAAGT 60.305 47.826 0.00 0.00 0.00 2.24
321 332 4.629092 GTCGTCTTCTTTGGGAGTAAGTT 58.371 43.478 0.00 0.00 0.00 2.66
322 333 5.055144 GTCGTCTTCTTTGGGAGTAAGTTT 58.945 41.667 0.00 0.00 0.00 2.66
332 343 9.635404 TCTTTGGGAGTAAGTTTTTCTGAATTA 57.365 29.630 0.00 0.00 0.00 1.40
359 370 9.529325 TTCAATATGATAGTAAGGAGTTGTTCG 57.471 33.333 0.00 0.00 0.00 3.95
360 371 8.141909 TCAATATGATAGTAAGGAGTTGTTCGG 58.858 37.037 0.00 0.00 0.00 4.30
361 372 4.119442 TGATAGTAAGGAGTTGTTCGGC 57.881 45.455 0.00 0.00 0.00 5.54
362 373 3.512329 TGATAGTAAGGAGTTGTTCGGCA 59.488 43.478 0.00 0.00 0.00 5.69
363 374 2.457366 AGTAAGGAGTTGTTCGGCAG 57.543 50.000 0.00 0.00 0.00 4.85
364 375 1.692519 AGTAAGGAGTTGTTCGGCAGT 59.307 47.619 0.00 0.00 0.00 4.40
365 376 2.067013 GTAAGGAGTTGTTCGGCAGTC 58.933 52.381 0.00 0.00 0.00 3.51
366 377 0.250338 AAGGAGTTGTTCGGCAGTCC 60.250 55.000 0.00 0.00 34.14 3.85
367 378 1.122019 AGGAGTTGTTCGGCAGTCCT 61.122 55.000 7.55 7.55 37.48 3.85
368 379 0.670854 GGAGTTGTTCGGCAGTCCTC 60.671 60.000 0.00 0.00 32.30 3.71
369 380 0.670854 GAGTTGTTCGGCAGTCCTCC 60.671 60.000 0.00 0.00 0.00 4.30
370 381 1.671379 GTTGTTCGGCAGTCCTCCC 60.671 63.158 0.00 0.00 0.00 4.30
378 389 3.465403 CAGTCCTCCCGCTCCCTG 61.465 72.222 0.00 0.00 0.00 4.45
381 392 2.121832 TCCTCCCGCTCCCTGAAA 59.878 61.111 0.00 0.00 0.00 2.69
382 393 1.306997 TCCTCCCGCTCCCTGAAAT 60.307 57.895 0.00 0.00 0.00 2.17
383 394 1.147153 CCTCCCGCTCCCTGAAATC 59.853 63.158 0.00 0.00 0.00 2.17
384 395 1.341156 CCTCCCGCTCCCTGAAATCT 61.341 60.000 0.00 0.00 0.00 2.40
385 396 0.105778 CTCCCGCTCCCTGAAATCTC 59.894 60.000 0.00 0.00 0.00 2.75
386 397 0.617535 TCCCGCTCCCTGAAATCTCA 60.618 55.000 0.00 0.00 0.00 3.27
399 410 5.480642 TGAAATCTCAGGATCTATGGAGC 57.519 43.478 0.00 0.00 0.00 4.70
401 412 4.888326 AATCTCAGGATCTATGGAGCAC 57.112 45.455 0.00 0.00 0.00 4.40
402 413 2.603021 TCTCAGGATCTATGGAGCACC 58.397 52.381 0.00 0.00 0.00 5.01
403 414 2.178764 TCTCAGGATCTATGGAGCACCT 59.821 50.000 0.71 0.00 37.04 4.00
404 415 2.562298 CTCAGGATCTATGGAGCACCTC 59.438 54.545 0.71 0.00 37.04 3.85
405 416 2.178764 TCAGGATCTATGGAGCACCTCT 59.821 50.000 0.71 0.00 37.04 3.69
406 417 2.971330 CAGGATCTATGGAGCACCTCTT 59.029 50.000 0.71 0.00 37.04 2.85
408 419 3.645687 AGGATCTATGGAGCACCTCTTTC 59.354 47.826 0.71 0.00 37.04 2.62
409 420 3.244387 GGATCTATGGAGCACCTCTTTCC 60.244 52.174 0.71 0.00 37.04 3.13
410 421 2.119495 TCTATGGAGCACCTCTTTCCC 58.881 52.381 0.71 0.00 37.04 3.97
411 422 1.141858 CTATGGAGCACCTCTTTCCCC 59.858 57.143 0.71 0.00 37.04 4.81
414 425 2.930562 AGCACCTCTTTCCCCGCT 60.931 61.111 0.00 0.00 0.00 5.52
415 426 2.436824 GCACCTCTTTCCCCGCTC 60.437 66.667 0.00 0.00 0.00 5.03
417 428 1.078848 CACCTCTTTCCCCGCTCTG 60.079 63.158 0.00 0.00 0.00 3.35
419 430 1.078848 CCTCTTTCCCCGCTCTGTG 60.079 63.158 0.00 0.00 0.00 3.66
421 432 0.539051 CTCTTTCCCCGCTCTGTGAT 59.461 55.000 0.00 0.00 0.00 3.06
422 433 0.984230 TCTTTCCCCGCTCTGTGATT 59.016 50.000 0.00 0.00 0.00 2.57
423 434 1.351017 TCTTTCCCCGCTCTGTGATTT 59.649 47.619 0.00 0.00 0.00 2.17
424 435 2.162681 CTTTCCCCGCTCTGTGATTTT 58.837 47.619 0.00 0.00 0.00 1.82
425 436 1.821216 TTCCCCGCTCTGTGATTTTC 58.179 50.000 0.00 0.00 0.00 2.29
428 439 1.200020 CCCCGCTCTGTGATTTTCAAC 59.800 52.381 0.00 0.00 0.00 3.18
429 440 2.154462 CCCGCTCTGTGATTTTCAACT 58.846 47.619 0.00 0.00 0.00 3.16
430 441 2.095567 CCCGCTCTGTGATTTTCAACTG 60.096 50.000 0.00 0.00 0.00 3.16
431 442 2.578495 CGCTCTGTGATTTTCAACTGC 58.422 47.619 0.00 0.00 0.00 4.40
432 443 2.225019 CGCTCTGTGATTTTCAACTGCT 59.775 45.455 0.00 0.00 0.00 4.24
433 444 3.562505 GCTCTGTGATTTTCAACTGCTG 58.437 45.455 0.00 0.00 0.00 4.41
434 445 3.562505 CTCTGTGATTTTCAACTGCTGC 58.437 45.455 0.00 0.00 0.00 5.25
435 446 3.216800 TCTGTGATTTTCAACTGCTGCT 58.783 40.909 0.00 0.00 0.00 4.24
436 447 3.251729 TCTGTGATTTTCAACTGCTGCTC 59.748 43.478 0.00 0.00 0.00 4.26
437 448 2.294233 TGTGATTTTCAACTGCTGCTCC 59.706 45.455 0.00 0.00 0.00 4.70
438 449 2.294233 GTGATTTTCAACTGCTGCTCCA 59.706 45.455 0.00 0.00 0.00 3.86
440 451 1.032014 TTTTCAACTGCTGCTCCACC 58.968 50.000 0.00 0.00 0.00 4.61
450 461 3.706373 GCTCCACCAGCTCCGGAA 61.706 66.667 5.23 0.00 45.83 4.30
462 473 0.671781 CTCCGGAAGCAGAGTTGTGG 60.672 60.000 5.23 0.00 0.00 4.17
464 475 0.671781 CCGGAAGCAGAGTTGTGGAG 60.672 60.000 0.00 0.00 0.00 3.86
465 476 1.294659 CGGAAGCAGAGTTGTGGAGC 61.295 60.000 0.00 0.00 0.00 4.70
467 478 1.294659 GAAGCAGAGTTGTGGAGCGG 61.295 60.000 0.00 0.00 0.00 5.52
468 479 1.758440 AAGCAGAGTTGTGGAGCGGA 61.758 55.000 0.00 0.00 0.00 5.54
469 480 1.739562 GCAGAGTTGTGGAGCGGAG 60.740 63.158 0.00 0.00 0.00 4.63
471 482 0.108898 CAGAGTTGTGGAGCGGAGAG 60.109 60.000 0.00 0.00 0.00 3.20
472 483 0.251386 AGAGTTGTGGAGCGGAGAGA 60.251 55.000 0.00 0.00 0.00 3.10
475 486 0.109039 GTTGTGGAGCGGAGAGACTC 60.109 60.000 0.00 0.00 0.00 3.36
485 496 1.137825 GAGAGACTCCGAACAGGCG 59.862 63.158 0.00 0.00 40.77 5.52
487 498 1.137825 GAGACTCCGAACAGGCGAG 59.862 63.158 0.00 0.00 40.77 5.03
489 500 4.421479 ACTCCGAACAGGCGAGCG 62.421 66.667 0.00 0.00 40.77 5.03
490 501 4.116328 CTCCGAACAGGCGAGCGA 62.116 66.667 0.00 0.00 40.77 4.93
491 502 4.116328 TCCGAACAGGCGAGCGAG 62.116 66.667 0.00 0.00 40.77 5.03
492 503 4.116328 CCGAACAGGCGAGCGAGA 62.116 66.667 0.00 0.00 0.00 4.04
495 506 1.080434 GAACAGGCGAGCGAGAAGT 60.080 57.895 0.00 0.00 0.00 3.01
496 507 0.667792 GAACAGGCGAGCGAGAAGTT 60.668 55.000 0.00 0.00 0.00 2.66
497 508 0.946221 AACAGGCGAGCGAGAAGTTG 60.946 55.000 0.00 0.00 0.00 3.16
498 509 1.080501 CAGGCGAGCGAGAAGTTGA 60.081 57.895 0.00 0.00 0.00 3.18
500 511 1.103803 AGGCGAGCGAGAAGTTGATA 58.896 50.000 0.00 0.00 0.00 2.15
501 512 1.201343 GGCGAGCGAGAAGTTGATAC 58.799 55.000 0.00 0.00 0.00 2.24
502 513 1.202313 GGCGAGCGAGAAGTTGATACT 60.202 52.381 0.00 0.00 35.68 2.12
504 515 2.924290 GCGAGCGAGAAGTTGATACTTT 59.076 45.455 0.00 0.00 44.51 2.66
506 517 4.143094 GCGAGCGAGAAGTTGATACTTTTT 60.143 41.667 0.00 0.00 44.51 1.94
530 675 2.427453 TGAGGGAGCGAGAAGTTGATAC 59.573 50.000 0.00 0.00 0.00 2.24
533 678 4.279145 AGGGAGCGAGAAGTTGATACTTA 58.721 43.478 0.00 0.00 44.51 2.24
743 892 2.292292 GCTGCCAACGGAAAGAAAAGTA 59.708 45.455 0.00 0.00 0.00 2.24
744 893 3.609409 GCTGCCAACGGAAAGAAAAGTAG 60.609 47.826 0.00 0.00 0.00 2.57
745 894 3.547746 TGCCAACGGAAAGAAAAGTAGT 58.452 40.909 0.00 0.00 0.00 2.73
746 895 3.562557 TGCCAACGGAAAGAAAAGTAGTC 59.437 43.478 0.00 0.00 0.00 2.59
747 896 3.562557 GCCAACGGAAAGAAAAGTAGTCA 59.437 43.478 0.00 0.00 0.00 3.41
748 897 4.554134 GCCAACGGAAAGAAAAGTAGTCAC 60.554 45.833 0.00 0.00 0.00 3.67
870 1021 0.614979 CGAAAGGTGGAGGGAGGAGA 60.615 60.000 0.00 0.00 0.00 3.71
871 1022 1.199615 GAAAGGTGGAGGGAGGAGAG 58.800 60.000 0.00 0.00 0.00 3.20
872 1023 0.252927 AAAGGTGGAGGGAGGAGAGG 60.253 60.000 0.00 0.00 0.00 3.69
873 1024 2.041405 GGTGGAGGGAGGAGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
874 1025 2.637640 GGTGGAGGGAGGAGAGGGA 61.638 68.421 0.00 0.00 0.00 4.20
875 1026 1.392534 GTGGAGGGAGGAGAGGGAA 59.607 63.158 0.00 0.00 0.00 3.97
876 1027 0.252742 GTGGAGGGAGGAGAGGGAAA 60.253 60.000 0.00 0.00 0.00 3.13
877 1028 0.496382 TGGAGGGAGGAGAGGGAAAA 59.504 55.000 0.00 0.00 0.00 2.29
878 1029 0.913205 GGAGGGAGGAGAGGGAAAAC 59.087 60.000 0.00 0.00 0.00 2.43
879 1030 1.657804 GAGGGAGGAGAGGGAAAACA 58.342 55.000 0.00 0.00 0.00 2.83
880 1031 1.985895 GAGGGAGGAGAGGGAAAACAA 59.014 52.381 0.00 0.00 0.00 2.83
885 1036 1.429299 AGGAGAGGGAAAACAAAGGGG 59.571 52.381 0.00 0.00 0.00 4.79
887 1053 2.515854 GAGAGGGAAAACAAAGGGGAC 58.484 52.381 0.00 0.00 0.00 4.46
900 1066 0.110486 AGGGGACACAAATTCGCAGT 59.890 50.000 0.00 0.00 0.00 4.40
1087 1257 0.818040 GTCCACTCCAAGGTTGCGTT 60.818 55.000 0.00 0.00 0.00 4.84
1228 1422 2.951458 CGAGGTTTTTGGGCGGAC 59.049 61.111 0.00 0.00 0.00 4.79
1346 1540 1.131303 TTGGGGAGTCGTGGGAATGT 61.131 55.000 0.00 0.00 0.00 2.71
1375 1569 2.180769 CTCGGTTCGGCATCGTGA 59.819 61.111 0.00 0.00 37.69 4.35
1431 1630 3.272574 TCAAGAGCTTAGATTGGCTGG 57.727 47.619 0.00 0.00 39.05 4.85
1455 1655 0.038166 ATGAACCGTGCCTTGGATGT 59.962 50.000 0.00 0.00 0.00 3.06
1474 1674 7.168219 TGGATGTAACATTTGCTAGTTCTCTT 58.832 34.615 0.00 0.00 0.00 2.85
1479 1679 9.204570 TGTAACATTTGCTAGTTCTCTTTACTC 57.795 33.333 0.00 0.00 0.00 2.59
1506 1706 1.873591 CCGCTACACTGCTTTTTCTGT 59.126 47.619 0.00 0.00 0.00 3.41
1541 1745 5.365025 TCAAAGGCTCTGCTTCTGTAGATAT 59.635 40.000 0.00 0.00 34.54 1.63
1635 1873 1.745087 CACAAGTGTGCCTGTTCTGTT 59.255 47.619 0.00 0.00 39.39 3.16
1689 1927 4.832266 AGCCTCATTTCTCATCGATCTAGT 59.168 41.667 0.00 0.00 0.00 2.57
1727 1965 9.343994 ACCTATAGATGGGTTTATGATCTTGAT 57.656 33.333 0.00 0.00 38.65 2.57
1732 1970 8.461249 AGATGGGTTTATGATCTTGATTCTTG 57.539 34.615 0.00 0.00 0.00 3.02
1733 1971 8.277197 AGATGGGTTTATGATCTTGATTCTTGA 58.723 33.333 0.00 0.00 0.00 3.02
1770 2017 1.612726 GCCAGTTTGATCTCTGTGCCT 60.613 52.381 0.00 0.00 0.00 4.75
1859 2107 5.450592 TGCATCTGTTTCTGTGCAATTTA 57.549 34.783 0.00 0.00 43.83 1.40
1869 2117 3.573538 TCTGTGCAATTTACAACATGCCT 59.426 39.130 0.00 0.00 38.00 4.75
1877 2125 6.564499 GCAATTTACAACATGCCTTTGTCTTG 60.564 38.462 3.65 7.79 38.21 3.02
1896 2144 4.467438 TCTTGAGATGATGCTGACTGGTTA 59.533 41.667 0.00 0.00 0.00 2.85
1933 2181 1.200948 GCAGGACTGTTTGAAGATGCC 59.799 52.381 0.82 0.00 0.00 4.40
1945 2193 2.647299 TGAAGATGCCCCAAGGAAACTA 59.353 45.455 0.00 0.00 42.68 2.24
2173 2427 1.553704 TCTGCTCTGTCATCTGTGCAT 59.446 47.619 0.00 0.00 39.71 3.96
2445 2707 8.374728 CAAATGATTTCATTACGTCAAACATGG 58.625 33.333 6.24 0.00 45.06 3.66
2470 2733 9.762933 GGCTCCAAATTATATAAAAGAAATGCA 57.237 29.630 0.00 0.00 0.00 3.96
2601 3051 8.566008 GCTAATTCAAGCATTATAGTTTGGTG 57.434 34.615 0.00 0.00 42.30 4.17
2644 3095 8.868522 ACTGATGAAATGAACTTTAGGATTGA 57.131 30.769 0.00 0.00 0.00 2.57
2948 3403 1.671054 GCTCAGCTTGCGGGTTACA 60.671 57.895 0.00 0.00 0.00 2.41
3032 3487 1.282157 GCTCCCCACACTGGAAATAGT 59.718 52.381 0.00 0.00 40.96 2.12
3042 3497 7.331026 CCACACTGGAAATAGTTTCTCATCTA 58.669 38.462 2.84 0.00 40.96 1.98
3331 3790 6.068473 TGCAGCTCATGATTTTGATGATAC 57.932 37.500 0.00 0.00 0.00 2.24
3368 3827 4.008074 ACCTATGGTGTGAACTGTGAAG 57.992 45.455 0.00 0.00 32.98 3.02
3589 4113 8.068893 TGAAGTTTGACTTACGACAATTCTAC 57.931 34.615 0.00 0.00 38.80 2.59
3846 5517 7.899648 TTAATAAAGGGTTTTGGTCACTTGA 57.100 32.000 0.00 0.00 0.00 3.02
4123 5877 3.821033 GCTTTGCCTTCTAAAGAACTGGA 59.179 43.478 0.00 0.00 37.33 3.86
4192 5946 2.439507 ACGGGTATTCCATCTGCAGAAT 59.560 45.455 22.50 12.19 36.67 2.40
4690 6449 6.346096 CGTAGTTTTCCCCTTATTGAGATCA 58.654 40.000 0.00 0.00 0.00 2.92
4769 6530 6.882610 TTCAGTTGAAGCATCAGTATTGTT 57.117 33.333 0.00 0.00 36.78 2.83
4848 6609 2.616510 CCCAAGCTATATGTAGGCTGGC 60.617 54.545 0.00 0.00 36.37 4.85
4850 6611 3.332919 CAAGCTATATGTAGGCTGGCAG 58.667 50.000 10.94 10.94 36.37 4.85
4899 6712 2.164624 GGCTGTCACTGACTAGTAGGTG 59.835 54.545 16.87 16.87 34.74 4.00
5140 6965 1.308216 CCCTCTCCATGGAAGGGGT 60.308 63.158 33.56 0.00 39.14 4.95
5199 7024 4.201990 CCCTCACTGCTAATTTCATTCAGC 60.202 45.833 0.00 0.00 34.56 4.26
5261 7086 4.630111 GCCCTTGTCATAAGATCTGAGAG 58.370 47.826 0.00 0.00 0.00 3.20
5465 7418 7.548075 GGATACTTTGAGATTCGGTTTCACTTA 59.452 37.037 0.00 0.00 0.00 2.24
5472 7425 0.863144 TCGGTTTCACTTACGCAAGC 59.137 50.000 0.00 0.00 45.62 4.01
5491 7444 5.220024 GCAAGCGCAATACATTTGAACTAAC 60.220 40.000 11.47 0.00 38.36 2.34
5529 7482 8.114331 TGTCATGTTAAGAGAAATGCATCTTT 57.886 30.769 0.00 0.00 37.05 2.52
5603 7557 8.827677 GGTGATAATGTATTTCTGGTTGTAGTC 58.172 37.037 0.00 0.00 0.00 2.59
5649 7603 5.034200 TGGAAGCAGATACTTTACCCCTAA 58.966 41.667 0.00 0.00 0.00 2.69
5842 7796 0.834687 TTCCTCGCCCCACAAGTACT 60.835 55.000 0.00 0.00 0.00 2.73
6217 8171 3.320826 GTCCCCAATTTAGTTGCAACTGT 59.679 43.478 36.50 21.64 40.07 3.55
6646 8603 2.460757 TTTTCAGGTACGTAGCACCC 57.539 50.000 25.28 9.56 36.67 4.61
6813 8770 6.346477 TCCTTCTATTCCATACCATCTTCG 57.654 41.667 0.00 0.00 0.00 3.79
6973 8930 2.148768 GGACAAAACAAGACGGGTAGG 58.851 52.381 0.00 0.00 0.00 3.18
6976 8933 2.159382 CAAAACAAGACGGGTAGGCAT 58.841 47.619 0.00 0.00 0.00 4.40
6987 8944 2.878406 CGGGTAGGCATTAAATCACTGG 59.122 50.000 0.00 0.00 0.00 4.00
6991 8948 3.737559 AGGCATTAAATCACTGGTGGA 57.262 42.857 0.70 0.00 0.00 4.02
7012 8969 3.717400 TGGAAAGCAAAACATTACGCA 57.283 38.095 0.00 0.00 0.00 5.24
7031 8988 6.263516 ACGCATAACTAGTTGAGTGTTCTA 57.736 37.500 18.56 0.00 38.87 2.10
7032 8989 6.091437 ACGCATAACTAGTTGAGTGTTCTAC 58.909 40.000 18.56 1.49 38.87 2.59
7045 9002 4.054780 GTGTTCTACTCACCAACACAGA 57.945 45.455 8.86 0.00 46.11 3.41
7047 9004 3.704566 TGTTCTACTCACCAACACAGACT 59.295 43.478 0.00 0.00 0.00 3.24
7048 9005 4.051922 GTTCTACTCACCAACACAGACTG 58.948 47.826 0.00 0.00 0.00 3.51
7049 9006 3.296854 TCTACTCACCAACACAGACTGT 58.703 45.455 1.07 1.07 32.89 3.55
7050 9007 3.704566 TCTACTCACCAACACAGACTGTT 59.295 43.478 5.04 0.00 44.51 3.16
7064 9021 7.217200 ACACAGACTGTTGTTATGTTCTGTAT 58.783 34.615 5.04 0.00 35.72 2.29
7065 9022 7.385205 ACACAGACTGTTGTTATGTTCTGTATC 59.615 37.037 5.04 0.00 35.72 2.24
7067 9024 8.803235 ACAGACTGTTGTTATGTTCTGTATCTA 58.197 33.333 1.07 0.00 35.72 1.98
7068 9025 9.295214 CAGACTGTTGTTATGTTCTGTATCTAG 57.705 37.037 0.00 0.00 0.00 2.43
7069 9026 7.976734 AGACTGTTGTTATGTTCTGTATCTAGC 59.023 37.037 0.00 0.00 0.00 3.42
7071 9028 8.314751 ACTGTTGTTATGTTCTGTATCTAGCTT 58.685 33.333 0.00 0.00 0.00 3.74
7072 9029 8.479313 TGTTGTTATGTTCTGTATCTAGCTTG 57.521 34.615 0.00 0.00 0.00 4.01
7075 9032 8.067751 TGTTATGTTCTGTATCTAGCTTGAGT 57.932 34.615 3.82 0.00 0.00 3.41
7078 9035 5.955488 TGTTCTGTATCTAGCTTGAGTGAC 58.045 41.667 3.82 2.85 0.00 3.67
7080 9037 6.884836 TGTTCTGTATCTAGCTTGAGTGACTA 59.115 38.462 3.82 0.00 0.00 2.59
7081 9038 7.066404 TGTTCTGTATCTAGCTTGAGTGACTAG 59.934 40.741 3.82 0.00 35.71 2.57
7082 9039 6.058833 TCTGTATCTAGCTTGAGTGACTAGG 58.941 44.000 3.82 0.00 35.22 3.02
7085 9042 3.702792 TCTAGCTTGAGTGACTAGGCTT 58.297 45.455 10.66 0.00 35.22 4.35
7086 9043 4.090090 TCTAGCTTGAGTGACTAGGCTTT 58.910 43.478 10.66 0.00 35.22 3.51
7088 9045 2.079925 GCTTGAGTGACTAGGCTTTGG 58.920 52.381 0.00 0.00 0.00 3.28
7090 9047 1.729586 TGAGTGACTAGGCTTTGGGT 58.270 50.000 0.00 0.00 0.00 4.51
7092 9049 3.450904 TGAGTGACTAGGCTTTGGGTAT 58.549 45.455 0.00 0.00 0.00 2.73
7093 9050 4.616553 TGAGTGACTAGGCTTTGGGTATA 58.383 43.478 0.00 0.00 0.00 1.47
7094 9051 4.404715 TGAGTGACTAGGCTTTGGGTATAC 59.595 45.833 0.00 0.00 0.00 1.47
7095 9052 4.621769 AGTGACTAGGCTTTGGGTATACT 58.378 43.478 2.25 0.00 0.00 2.12
7096 9053 5.030820 AGTGACTAGGCTTTGGGTATACTT 58.969 41.667 2.25 0.00 0.00 2.24
7097 9054 6.200114 AGTGACTAGGCTTTGGGTATACTTA 58.800 40.000 2.25 0.00 0.00 2.24
7098 9055 6.844917 AGTGACTAGGCTTTGGGTATACTTAT 59.155 38.462 2.25 0.00 0.00 1.73
7099 9056 7.347485 AGTGACTAGGCTTTGGGTATACTTATT 59.653 37.037 2.25 0.00 0.00 1.40
7100 9057 8.645110 GTGACTAGGCTTTGGGTATACTTATTA 58.355 37.037 2.25 0.00 0.00 0.98
7101 9058 9.216148 TGACTAGGCTTTGGGTATACTTATTAA 57.784 33.333 2.25 0.00 0.00 1.40
7106 9063 9.574516 AGGCTTTGGGTATACTTATTAATGAAG 57.425 33.333 2.25 1.32 0.00 3.02
7107 9064 9.350951 GGCTTTGGGTATACTTATTAATGAAGT 57.649 33.333 2.25 6.84 40.27 3.01
7125 9082 8.539770 AATGAAGTGACTAGACTTTGTGTATG 57.460 34.615 0.00 0.00 36.27 2.39
7126 9083 6.455647 TGAAGTGACTAGACTTTGTGTATGG 58.544 40.000 0.00 0.00 36.27 2.74
7127 9084 6.041637 TGAAGTGACTAGACTTTGTGTATGGT 59.958 38.462 0.00 0.00 36.27 3.55
7128 9085 6.420913 AGTGACTAGACTTTGTGTATGGTT 57.579 37.500 0.00 0.00 31.78 3.67
7130 9087 7.603651 AGTGACTAGACTTTGTGTATGGTTAG 58.396 38.462 0.00 0.00 31.78 2.34
7133 9090 4.910458 AGACTTTGTGTATGGTTAGGCT 57.090 40.909 0.00 0.00 0.00 4.58
7135 9092 5.631119 AGACTTTGTGTATGGTTAGGCTTT 58.369 37.500 0.00 0.00 0.00 3.51
7136 9093 5.473504 AGACTTTGTGTATGGTTAGGCTTTG 59.526 40.000 0.00 0.00 0.00 2.77
7160 9228 8.500753 TGTAAAACAGACTGTTGTTATGTTCT 57.499 30.769 21.24 0.00 40.14 3.01
7214 9282 9.982651 GGTATGCTTATTAATGAAGTGACTAGA 57.017 33.333 0.00 0.00 0.00 2.43
7278 9346 5.049749 TGTCCACAACACTGACAATTATTCG 60.050 40.000 0.00 0.00 36.16 3.34
7347 9415 9.965824 CTAGTTCATTAAACCTCAACATTTTGT 57.034 29.630 0.00 0.00 38.76 2.83
7354 9422 9.912634 ATTAAACCTCAACATTTTGTGTATCTG 57.087 29.630 0.00 0.00 41.14 2.90
7357 9425 8.635765 AACCTCAACATTTTGTGTATCTGTAT 57.364 30.769 0.00 0.00 41.14 2.29
7636 9708 0.035458 AACGCTCCAAGGAGTTCCAG 59.965 55.000 16.94 6.96 43.70 3.86
7729 9801 1.417517 TCATCCATGTTCTCATCCGGG 59.582 52.381 0.00 0.00 31.15 5.73
7738 9810 2.040442 TCATCCGGGCCCTTCTCA 59.960 61.111 22.43 0.00 0.00 3.27
7808 9880 3.349927 TCGGAAGATCTTCACGAAGGTA 58.650 45.455 30.18 17.13 41.20 3.08
7886 9958 2.738587 TCAAAGGCTGGTGGTGTTAA 57.261 45.000 0.00 0.00 0.00 2.01
7990 10062 5.743636 ACATTTGATGGCTTTGTACCAAT 57.256 34.783 0.00 0.00 41.49 3.16
8034 10106 0.399233 GTCCCTAGGTCCTGGCTCAT 60.399 60.000 8.29 0.00 0.00 2.90
8035 10107 0.399091 TCCCTAGGTCCTGGCTCATG 60.399 60.000 8.29 0.00 0.00 3.07
8036 10108 0.692419 CCCTAGGTCCTGGCTCATGT 60.692 60.000 8.29 0.00 0.00 3.21
8037 10109 1.207791 CCTAGGTCCTGGCTCATGTT 58.792 55.000 0.00 0.00 0.00 2.71
8038 10110 1.134280 CCTAGGTCCTGGCTCATGTTG 60.134 57.143 0.00 0.00 0.00 3.33
8044 10116 1.162698 CCTGGCTCATGTTGACACAG 58.837 55.000 0.00 0.00 35.94 3.66
8048 10120 3.814625 TGGCTCATGTTGACACAGTTTA 58.185 40.909 0.00 0.00 35.94 2.01
8085 10157 3.667497 TTTTTGTGGTGCTTGTTGTCA 57.333 38.095 0.00 0.00 0.00 3.58
8086 10158 3.667497 TTTTGTGGTGCTTGTTGTCAA 57.333 38.095 0.00 0.00 0.00 3.18
8087 10159 2.645730 TTGTGGTGCTTGTTGTCAAC 57.354 45.000 8.86 8.86 0.00 3.18
8109 10185 1.211703 TGAGTTGCAACAGGAAGTGGA 59.788 47.619 30.11 1.43 0.00 4.02
8164 10240 2.183679 GGAACTGTGGAGTGGAGATCT 58.816 52.381 0.00 0.00 30.61 2.75
8213 10289 4.624364 CCTGCCTGCACACGGTGA 62.624 66.667 16.29 0.00 35.23 4.02
8227 10303 3.961576 GGTGATGTAGTACCGGAGC 57.038 57.895 9.46 0.00 0.00 4.70
8228 10304 0.030369 GGTGATGTAGTACCGGAGCG 59.970 60.000 9.46 0.00 0.00 5.03
8259 10335 5.104982 TGAGGGAGTTTTGTGAAAGCAAAAT 60.105 36.000 7.15 0.00 46.00 1.82
8283 10359 1.966451 CCTGAACAAGCGGGTGTCC 60.966 63.158 0.00 0.00 0.00 4.02
8284 10360 1.071471 CTGAACAAGCGGGTGTCCT 59.929 57.895 0.00 0.00 0.00 3.85
8285 10361 0.951040 CTGAACAAGCGGGTGTCCTC 60.951 60.000 0.00 0.00 0.00 3.71
8286 10362 1.671379 GAACAAGCGGGTGTCCTCC 60.671 63.158 0.00 0.00 0.00 4.30
8287 10363 2.391724 GAACAAGCGGGTGTCCTCCA 62.392 60.000 0.00 0.00 0.00 3.86
8288 10364 2.046892 CAAGCGGGTGTCCTCCAG 60.047 66.667 0.00 0.00 0.00 3.86
8289 10365 3.322466 AAGCGGGTGTCCTCCAGG 61.322 66.667 0.00 0.00 0.00 4.45
8386 10462 1.597027 CGCGGTCAAACACTCCCTT 60.597 57.895 0.00 0.00 0.00 3.95
8422 10498 1.265635 CTAACCTCTCGATCGCCTCTG 59.734 57.143 11.09 0.03 0.00 3.35
8447 10524 2.664081 CCCACCTCACTGCTCCCTC 61.664 68.421 0.00 0.00 0.00 4.30
8448 10525 2.664081 CCACCTCACTGCTCCCTCC 61.664 68.421 0.00 0.00 0.00 4.30
8449 10526 2.284995 ACCTCACTGCTCCCTCCC 60.285 66.667 0.00 0.00 0.00 4.30
8450 10527 2.040278 CCTCACTGCTCCCTCCCT 59.960 66.667 0.00 0.00 0.00 4.20
8471 10548 2.091541 CCCTCTCTAGATCGAGATGGC 58.908 57.143 5.96 0.00 38.44 4.40
8476 10553 3.087781 CTCTAGATCGAGATGGCCATGA 58.912 50.000 26.56 15.33 32.74 3.07
8545 10622 4.077184 CCAAGCCGTACAGCCCGA 62.077 66.667 0.00 0.00 0.00 5.14
8571 10648 1.376424 CATCCTGCTCAACTGCGGT 60.376 57.895 0.00 0.00 37.61 5.68
8808 10885 1.807886 CCTCCACTTCTACCCGTCG 59.192 63.158 0.00 0.00 0.00 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.828921 TGTACGTATCCATGTAGCCTCT 58.171 45.455 0.00 0.00 0.00 3.69
43 44 4.383173 TCTTTTCTTTTCCCCTCGTGTAC 58.617 43.478 0.00 0.00 0.00 2.90
85 87 2.586079 CGGGTAGGCGCAGACATG 60.586 66.667 10.83 0.00 39.87 3.21
86 88 3.849951 CCGGGTAGGCGCAGACAT 61.850 66.667 10.83 0.00 39.87 3.06
95 106 1.507141 GCGCATCAAATCCGGGTAGG 61.507 60.000 0.30 0.00 42.97 3.18
117 128 2.169832 GCTACAGTTGTGAGCCTTGA 57.830 50.000 0.00 0.00 0.00 3.02
152 163 0.252012 CCCATTACCCCACAAGGCAA 60.252 55.000 0.00 0.00 0.00 4.52
154 165 1.381191 CCCCATTACCCCACAAGGC 60.381 63.158 0.00 0.00 0.00 4.35
155 166 0.411848 AACCCCATTACCCCACAAGG 59.588 55.000 0.00 0.00 0.00 3.61
158 169 2.723010 ACTTTAACCCCATTACCCCACA 59.277 45.455 0.00 0.00 0.00 4.17
160 171 4.227982 GTCTACTTTAACCCCATTACCCCA 59.772 45.833 0.00 0.00 0.00 4.96
161 172 4.227982 TGTCTACTTTAACCCCATTACCCC 59.772 45.833 0.00 0.00 0.00 4.95
162 173 5.434408 CTGTCTACTTTAACCCCATTACCC 58.566 45.833 0.00 0.00 0.00 3.69
163 174 4.880120 GCTGTCTACTTTAACCCCATTACC 59.120 45.833 0.00 0.00 0.00 2.85
165 176 5.338871 CCAGCTGTCTACTTTAACCCCATTA 60.339 44.000 13.81 0.00 0.00 1.90
166 177 4.567747 CCAGCTGTCTACTTTAACCCCATT 60.568 45.833 13.81 0.00 0.00 3.16
167 178 3.054361 CCAGCTGTCTACTTTAACCCCAT 60.054 47.826 13.81 0.00 0.00 4.00
274 285 2.470057 TTTGGAGGGAAAAAGGTGCT 57.530 45.000 0.00 0.00 0.00 4.40
280 291 3.998341 CGACGAGTATTTGGAGGGAAAAA 59.002 43.478 0.00 0.00 0.00 1.94
310 321 9.581289 TGAATAATTCAGAAAAACTTACTCCCA 57.419 29.630 0.00 0.00 34.08 4.37
334 345 8.141909 CCGAACAACTCCTTACTATCATATTGA 58.858 37.037 0.00 0.00 0.00 2.57
345 356 2.067013 GACTGCCGAACAACTCCTTAC 58.933 52.381 0.00 0.00 0.00 2.34
346 357 1.001633 GGACTGCCGAACAACTCCTTA 59.998 52.381 0.00 0.00 0.00 2.69
347 358 0.250338 GGACTGCCGAACAACTCCTT 60.250 55.000 0.00 0.00 0.00 3.36
348 359 1.122019 AGGACTGCCGAACAACTCCT 61.122 55.000 0.00 0.00 39.96 3.69
350 361 0.670854 GGAGGACTGCCGAACAACTC 60.671 60.000 0.00 0.00 39.96 3.01
351 362 1.371558 GGAGGACTGCCGAACAACT 59.628 57.895 0.00 0.00 39.96 3.16
352 363 1.671379 GGGAGGACTGCCGAACAAC 60.671 63.158 0.00 0.00 39.96 3.32
353 364 2.747686 GGGAGGACTGCCGAACAA 59.252 61.111 0.00 0.00 39.96 2.83
361 372 3.465403 CAGGGAGCGGGAGGACTG 61.465 72.222 0.00 0.00 0.00 3.51
362 373 2.748641 TTTCAGGGAGCGGGAGGACT 62.749 60.000 0.00 0.00 0.00 3.85
363 374 1.627297 ATTTCAGGGAGCGGGAGGAC 61.627 60.000 0.00 0.00 0.00 3.85
364 375 1.306997 ATTTCAGGGAGCGGGAGGA 60.307 57.895 0.00 0.00 0.00 3.71
365 376 1.147153 GATTTCAGGGAGCGGGAGG 59.853 63.158 0.00 0.00 0.00 4.30
366 377 0.105778 GAGATTTCAGGGAGCGGGAG 59.894 60.000 0.00 0.00 0.00 4.30
367 378 0.617535 TGAGATTTCAGGGAGCGGGA 60.618 55.000 0.00 0.00 0.00 5.14
368 379 0.179062 CTGAGATTTCAGGGAGCGGG 60.179 60.000 5.33 0.00 45.79 6.13
369 380 3.376218 CTGAGATTTCAGGGAGCGG 57.624 57.895 5.33 0.00 45.79 5.52
377 388 4.903649 TGCTCCATAGATCCTGAGATTTCA 59.096 41.667 0.00 0.00 30.90 2.69
378 389 5.237048 GTGCTCCATAGATCCTGAGATTTC 58.763 45.833 0.00 0.00 30.90 2.17
381 392 3.172339 GGTGCTCCATAGATCCTGAGAT 58.828 50.000 0.00 0.00 34.57 2.75
382 393 2.178764 AGGTGCTCCATAGATCCTGAGA 59.821 50.000 7.70 0.00 35.89 3.27
383 394 2.562298 GAGGTGCTCCATAGATCCTGAG 59.438 54.545 7.70 0.00 35.89 3.35
384 395 2.178764 AGAGGTGCTCCATAGATCCTGA 59.821 50.000 7.70 0.00 35.89 3.86
385 396 2.607499 AGAGGTGCTCCATAGATCCTG 58.393 52.381 7.70 0.00 35.89 3.86
386 397 3.342926 AAGAGGTGCTCCATAGATCCT 57.657 47.619 7.70 0.00 35.89 3.24
387 398 3.244387 GGAAAGAGGTGCTCCATAGATCC 60.244 52.174 7.70 4.50 35.89 3.36
388 399 3.244387 GGGAAAGAGGTGCTCCATAGATC 60.244 52.174 7.70 0.00 35.89 2.75
389 400 2.708325 GGGAAAGAGGTGCTCCATAGAT 59.292 50.000 7.70 0.00 35.89 1.98
391 402 1.141858 GGGGAAAGAGGTGCTCCATAG 59.858 57.143 7.70 0.00 35.89 2.23
392 403 1.213296 GGGGAAAGAGGTGCTCCATA 58.787 55.000 7.70 0.00 35.89 2.74
393 404 1.915078 CGGGGAAAGAGGTGCTCCAT 61.915 60.000 7.70 0.00 35.89 3.41
394 405 2.592993 CGGGGAAAGAGGTGCTCCA 61.593 63.158 7.70 0.00 35.89 3.86
395 406 2.269241 CGGGGAAAGAGGTGCTCC 59.731 66.667 0.00 0.00 0.00 4.70
396 407 2.436824 GCGGGGAAAGAGGTGCTC 60.437 66.667 0.00 0.00 0.00 4.26
397 408 2.930562 AGCGGGGAAAGAGGTGCT 60.931 61.111 0.00 0.00 0.00 4.40
399 410 1.078848 CAGAGCGGGGAAAGAGGTG 60.079 63.158 0.00 0.00 0.00 4.00
401 412 1.078848 CACAGAGCGGGGAAAGAGG 60.079 63.158 0.00 0.00 0.00 3.69
402 413 0.539051 ATCACAGAGCGGGGAAAGAG 59.461 55.000 0.00 0.00 0.00 2.85
403 414 0.984230 AATCACAGAGCGGGGAAAGA 59.016 50.000 0.00 0.00 0.00 2.52
404 415 1.826385 AAATCACAGAGCGGGGAAAG 58.174 50.000 0.00 0.00 0.00 2.62
405 416 2.159382 GAAAATCACAGAGCGGGGAAA 58.841 47.619 0.00 0.00 0.00 3.13
406 417 1.073125 TGAAAATCACAGAGCGGGGAA 59.927 47.619 0.00 0.00 0.00 3.97
408 419 1.200020 GTTGAAAATCACAGAGCGGGG 59.800 52.381 0.00 0.00 0.00 5.73
409 420 2.095567 CAGTTGAAAATCACAGAGCGGG 60.096 50.000 0.00 0.00 0.00 6.13
410 421 2.666619 GCAGTTGAAAATCACAGAGCGG 60.667 50.000 0.00 0.00 0.00 5.52
411 422 2.225019 AGCAGTTGAAAATCACAGAGCG 59.775 45.455 0.00 0.00 0.00 5.03
414 425 3.216800 AGCAGCAGTTGAAAATCACAGA 58.783 40.909 0.00 0.00 0.00 3.41
415 426 3.562505 GAGCAGCAGTTGAAAATCACAG 58.437 45.455 0.00 0.00 0.00 3.66
417 428 2.294233 TGGAGCAGCAGTTGAAAATCAC 59.706 45.455 0.00 0.00 0.00 3.06
419 430 2.352127 GGTGGAGCAGCAGTTGAAAATC 60.352 50.000 0.00 0.00 0.00 2.17
421 432 1.032014 GGTGGAGCAGCAGTTGAAAA 58.968 50.000 0.00 0.00 0.00 2.29
422 433 0.106769 TGGTGGAGCAGCAGTTGAAA 60.107 50.000 0.00 0.00 36.93 2.69
423 434 1.531259 TGGTGGAGCAGCAGTTGAA 59.469 52.632 0.00 0.00 36.93 2.69
424 435 3.239464 TGGTGGAGCAGCAGTTGA 58.761 55.556 0.00 0.00 36.93 3.18
434 445 2.581354 CTTCCGGAGCTGGTGGAG 59.419 66.667 3.34 0.00 32.39 3.86
444 455 1.118965 TCCACAACTCTGCTTCCGGA 61.119 55.000 0.00 0.00 0.00 5.14
445 456 0.671781 CTCCACAACTCTGCTTCCGG 60.672 60.000 0.00 0.00 0.00 5.14
446 457 1.294659 GCTCCACAACTCTGCTTCCG 61.295 60.000 0.00 0.00 0.00 4.30
447 458 1.294659 CGCTCCACAACTCTGCTTCC 61.295 60.000 0.00 0.00 0.00 3.46
448 459 1.294659 CCGCTCCACAACTCTGCTTC 61.295 60.000 0.00 0.00 0.00 3.86
450 461 2.164865 CTCCGCTCCACAACTCTGCT 62.165 60.000 0.00 0.00 0.00 4.24
452 463 0.108898 CTCTCCGCTCCACAACTCTG 60.109 60.000 0.00 0.00 0.00 3.35
453 464 0.251386 TCTCTCCGCTCCACAACTCT 60.251 55.000 0.00 0.00 0.00 3.24
457 468 2.268022 GAGTCTCTCCGCTCCACAA 58.732 57.895 0.00 0.00 0.00 3.33
458 469 4.004348 GAGTCTCTCCGCTCCACA 57.996 61.111 0.00 0.00 0.00 4.17
467 478 1.137825 CGCCTGTTCGGAGTCTCTC 59.862 63.158 0.00 0.00 33.16 3.20
468 479 1.303398 TCGCCTGTTCGGAGTCTCT 60.303 57.895 0.00 0.00 33.77 3.10
469 480 1.137825 CTCGCCTGTTCGGAGTCTC 59.862 63.158 0.00 0.00 33.77 3.36
471 482 2.507324 GCTCGCCTGTTCGGAGTC 60.507 66.667 0.00 0.00 33.77 3.36
472 483 4.421479 CGCTCGCCTGTTCGGAGT 62.421 66.667 0.00 0.00 33.77 3.85
475 486 3.626680 TTCTCGCTCGCCTGTTCGG 62.627 63.158 0.00 0.00 0.00 4.30
476 487 2.126463 TTCTCGCTCGCCTGTTCG 60.126 61.111 0.00 0.00 0.00 3.95
477 488 0.667792 AACTTCTCGCTCGCCTGTTC 60.668 55.000 0.00 0.00 0.00 3.18
479 490 1.373497 CAACTTCTCGCTCGCCTGT 60.373 57.895 0.00 0.00 0.00 4.00
480 491 0.459237 ATCAACTTCTCGCTCGCCTG 60.459 55.000 0.00 0.00 0.00 4.85
481 492 1.103803 TATCAACTTCTCGCTCGCCT 58.896 50.000 0.00 0.00 0.00 5.52
482 493 1.201343 GTATCAACTTCTCGCTCGCC 58.799 55.000 0.00 0.00 0.00 5.54
483 494 2.196295 AGTATCAACTTCTCGCTCGC 57.804 50.000 0.00 0.00 29.00 5.03
506 517 2.104111 TCAACTTCTCGCTCCCTCAAAA 59.896 45.455 0.00 0.00 0.00 2.44
507 518 1.691976 TCAACTTCTCGCTCCCTCAAA 59.308 47.619 0.00 0.00 0.00 2.69
508 519 1.338107 TCAACTTCTCGCTCCCTCAA 58.662 50.000 0.00 0.00 0.00 3.02
509 520 1.561643 ATCAACTTCTCGCTCCCTCA 58.438 50.000 0.00 0.00 0.00 3.86
510 521 2.691011 AGTATCAACTTCTCGCTCCCTC 59.309 50.000 0.00 0.00 29.00 4.30
870 1021 1.289530 TGTGTCCCCTTTGTTTTCCCT 59.710 47.619 0.00 0.00 0.00 4.20
871 1022 1.783071 TGTGTCCCCTTTGTTTTCCC 58.217 50.000 0.00 0.00 0.00 3.97
872 1023 3.897141 TTTGTGTCCCCTTTGTTTTCC 57.103 42.857 0.00 0.00 0.00 3.13
873 1024 4.506288 CGAATTTGTGTCCCCTTTGTTTTC 59.494 41.667 0.00 0.00 0.00 2.29
874 1025 4.438148 CGAATTTGTGTCCCCTTTGTTTT 58.562 39.130 0.00 0.00 0.00 2.43
875 1026 3.739830 GCGAATTTGTGTCCCCTTTGTTT 60.740 43.478 0.00 0.00 0.00 2.83
876 1027 2.223947 GCGAATTTGTGTCCCCTTTGTT 60.224 45.455 0.00 0.00 0.00 2.83
877 1028 1.339929 GCGAATTTGTGTCCCCTTTGT 59.660 47.619 0.00 0.00 0.00 2.83
878 1029 1.339610 TGCGAATTTGTGTCCCCTTTG 59.660 47.619 0.00 0.00 0.00 2.77
879 1030 1.613437 CTGCGAATTTGTGTCCCCTTT 59.387 47.619 0.00 0.00 0.00 3.11
880 1031 1.247567 CTGCGAATTTGTGTCCCCTT 58.752 50.000 0.00 0.00 0.00 3.95
885 1036 0.725784 CGGCACTGCGAATTTGTGTC 60.726 55.000 0.00 0.00 34.52 3.67
887 1053 1.442520 CCGGCACTGCGAATTTGTG 60.443 57.895 0.00 0.00 35.08 3.33
900 1066 4.986708 GTTTTGGGGGAGCCGGCA 62.987 66.667 31.54 2.66 0.00 5.69
1069 1239 0.817634 CAACGCAACCTTGGAGTGGA 60.818 55.000 0.00 0.00 0.00 4.02
1087 1257 1.990160 AAACAGGTTCCGGTGCTCCA 61.990 55.000 0.00 0.00 0.00 3.86
1431 1630 2.268076 AAGGCACGGTTCATGGCAC 61.268 57.895 0.00 0.00 44.76 5.01
1455 1655 7.544566 CCGAGTAAAGAGAACTAGCAAATGTTA 59.455 37.037 0.00 0.00 0.00 2.41
1506 1706 1.072331 GAGCCTTTGACACAGAAGGGA 59.928 52.381 6.55 0.00 42.16 4.20
1591 1795 7.012894 GTGTATATTCCAAATCGATGGTTTCCA 59.987 37.037 0.00 0.00 41.46 3.53
1649 1887 4.156556 TGAGGCTGCAACAAGTTCATATTC 59.843 41.667 0.50 0.00 0.00 1.75
1665 1903 3.992643 AGATCGATGAGAAATGAGGCTG 58.007 45.455 0.54 0.00 0.00 4.85
1727 1965 5.047377 GCCAGGTCCAAATGTTATTCAAGAA 60.047 40.000 0.00 0.00 0.00 2.52
1728 1966 4.462483 GCCAGGTCCAAATGTTATTCAAGA 59.538 41.667 0.00 0.00 0.00 3.02
1729 1967 4.381932 GGCCAGGTCCAAATGTTATTCAAG 60.382 45.833 0.00 0.00 0.00 3.02
1730 1968 3.513515 GGCCAGGTCCAAATGTTATTCAA 59.486 43.478 0.00 0.00 0.00 2.69
1731 1969 3.096092 GGCCAGGTCCAAATGTTATTCA 58.904 45.455 0.00 0.00 0.00 2.57
1732 1970 3.096092 TGGCCAGGTCCAAATGTTATTC 58.904 45.455 0.00 0.00 32.18 1.75
1733 1971 3.099141 CTGGCCAGGTCCAAATGTTATT 58.901 45.455 26.14 0.00 35.36 1.40
1770 2017 5.247564 AGCCCAGTAGAAACAATACACAGTA 59.752 40.000 0.00 0.00 0.00 2.74
1859 2107 3.554934 TCTCAAGACAAAGGCATGTTGT 58.445 40.909 0.14 0.14 41.84 3.32
1869 2117 4.694037 CAGTCAGCATCATCTCAAGACAAA 59.306 41.667 0.00 0.00 0.00 2.83
1877 2125 4.569966 CAGTTAACCAGTCAGCATCATCTC 59.430 45.833 0.88 0.00 0.00 2.75
1896 2144 3.118038 TCCTGCCAAGAAACAGTACAGTT 60.118 43.478 0.00 0.00 31.76 3.16
1933 2181 9.942850 AACAAATTAAATGATAGTTTCCTTGGG 57.057 29.630 0.00 0.00 0.00 4.12
2173 2427 1.528542 CGGTGCGGAGATAGGAGGA 60.529 63.158 0.00 0.00 0.00 3.71
2418 2680 9.127006 CATGTTTGACGTAATGAAATCATTTGA 57.873 29.630 13.40 0.00 43.48 2.69
2601 3051 5.581126 TCAGTACCATTCCAAATTGATGC 57.419 39.130 0.00 0.00 0.00 3.91
2754 3207 6.934645 ACAGAGAGTGAATTAAAACGGAATCA 59.065 34.615 0.00 0.00 0.00 2.57
3032 3487 7.320399 TCGCAGTAACTTGATTAGATGAGAAA 58.680 34.615 0.00 0.00 0.00 2.52
3042 3497 9.113838 AGAATAATTCATCGCAGTAACTTGATT 57.886 29.630 0.00 0.00 0.00 2.57
3331 3790 8.429641 ACACCATAGGTAATTGGACATAACTAG 58.570 37.037 0.00 0.00 36.79 2.57
3368 3827 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
3589 4113 7.550196 CCCTCCATTCCAAAATAATTGAAGTTG 59.450 37.037 0.00 0.00 0.00 3.16
3695 4219 6.843069 AATGCTACAACAATTTTGGTCAAC 57.157 33.333 0.00 0.00 0.00 3.18
3738 4262 4.993705 TTTGGAAGACAGTAGATTGGGT 57.006 40.909 0.00 0.00 0.00 4.51
3857 5611 9.688091 TTACCAAATAATGCACACCTAGAATTA 57.312 29.630 0.00 0.00 0.00 1.40
4012 5766 1.673923 GCATGCTTGCTTTCCCTTTCC 60.674 52.381 16.80 0.00 45.77 3.13
4033 5787 3.521727 CTCCCCAGGTTATATACAGGCT 58.478 50.000 0.00 0.00 0.00 4.58
4192 5946 1.403679 CACACGAAAAGAAAGGGCACA 59.596 47.619 0.00 0.00 0.00 4.57
4472 6228 0.321653 GAGGCGCCTTCTTCTTTCCA 60.322 55.000 33.34 0.00 0.00 3.53
4620 6378 6.119240 TGGACAATAATGCAAAAATTGGGA 57.881 33.333 17.93 4.47 35.40 4.37
4705 6464 7.451566 TCAAGCAATAGCCTAGTATCAGACATA 59.548 37.037 0.00 0.00 43.56 2.29
4712 6471 5.936956 AGCATTCAAGCAATAGCCTAGTATC 59.063 40.000 0.00 0.00 43.56 2.24
4769 6530 6.183361 CCAGGGACAAAATATCTCTACCATCA 60.183 42.308 0.00 0.00 0.00 3.07
4899 6712 4.192429 ACAACCATTATTTGAAGGCTGC 57.808 40.909 0.00 0.00 0.00 5.25
5140 6965 4.161377 TGAGATCCACGATAATGTTGGTCA 59.839 41.667 0.00 0.00 0.00 4.02
5199 7024 1.970114 CAGCAGCCCTTGTCTGTGG 60.970 63.158 0.00 0.00 34.21 4.17
5261 7086 2.203294 ACCGGCACACCAAACTCC 60.203 61.111 0.00 0.00 34.57 3.85
5465 7418 1.198867 TCAAATGTATTGCGCTTGCGT 59.801 42.857 16.38 0.00 43.34 5.24
5472 7425 5.854157 AGACGTTAGTTCAAATGTATTGCG 58.146 37.500 0.00 0.00 0.00 4.85
5491 7444 2.079158 ACATGACAAGCCATGAAGACG 58.921 47.619 10.42 0.00 44.98 4.18
5548 7502 7.936847 TCACAGTCCACAAATATGTAAGAAAGT 59.063 33.333 0.00 0.00 37.82 2.66
5649 7603 5.614402 AGAATCTGAATGAATCATAGGGGGT 59.386 40.000 0.00 0.00 37.44 4.95
5842 7796 6.313519 AGTTCTTCATATGCAAGGAACCTA 57.686 37.500 12.86 0.00 0.00 3.08
6246 8200 9.699410 TGGACATCAGGAAATTACAATAAGATT 57.301 29.630 0.00 0.00 0.00 2.40
6449 8403 6.712095 ACACTTTAGCATGAAAGTCATTCTCA 59.288 34.615 9.05 0.00 44.52 3.27
6610 8567 6.932400 ACCTGAAAAACACGTCAGACATATAA 59.068 34.615 0.41 0.00 43.32 0.98
6646 8603 2.604914 GTGTCCTGTCATTGCATACTCG 59.395 50.000 0.00 0.00 0.00 4.18
6866 8823 9.760077 GGCTGCTCAATAGTTACTAAAATAGTA 57.240 33.333 0.00 0.00 40.14 1.82
6867 8824 8.265055 TGGCTGCTCAATAGTTACTAAAATAGT 58.735 33.333 0.00 0.00 42.68 2.12
6868 8825 8.662781 TGGCTGCTCAATAGTTACTAAAATAG 57.337 34.615 0.00 0.00 0.00 1.73
6973 8930 3.953612 TCCATCCACCAGTGATTTAATGC 59.046 43.478 0.00 0.00 0.00 3.56
6976 8933 4.462483 GCTTTCCATCCACCAGTGATTTAA 59.538 41.667 0.00 0.00 0.00 1.52
6987 8944 4.621034 CGTAATGTTTTGCTTTCCATCCAC 59.379 41.667 0.00 0.00 0.00 4.02
6991 8948 4.250116 TGCGTAATGTTTTGCTTTCCAT 57.750 36.364 0.00 0.00 0.00 3.41
7039 8996 5.428253 ACAGAACATAACAACAGTCTGTGT 58.572 37.500 6.18 4.35 43.24 3.72
7040 8997 5.991328 ACAGAACATAACAACAGTCTGTG 57.009 39.130 6.18 3.71 36.09 3.66
7041 8998 7.671302 AGATACAGAACATAACAACAGTCTGT 58.329 34.615 0.00 0.00 39.93 3.41
7042 8999 9.295214 CTAGATACAGAACATAACAACAGTCTG 57.705 37.037 0.00 0.00 0.00 3.51
7043 9000 7.976734 GCTAGATACAGAACATAACAACAGTCT 59.023 37.037 0.00 0.00 0.00 3.24
7044 9001 7.976734 AGCTAGATACAGAACATAACAACAGTC 59.023 37.037 0.00 0.00 0.00 3.51
7045 9002 7.841956 AGCTAGATACAGAACATAACAACAGT 58.158 34.615 0.00 0.00 0.00 3.55
7047 9004 8.311109 TCAAGCTAGATACAGAACATAACAACA 58.689 33.333 0.00 0.00 0.00 3.33
7048 9005 8.703604 TCAAGCTAGATACAGAACATAACAAC 57.296 34.615 0.00 0.00 0.00 3.32
7049 9006 8.531982 ACTCAAGCTAGATACAGAACATAACAA 58.468 33.333 0.00 0.00 0.00 2.83
7050 9007 7.976175 CACTCAAGCTAGATACAGAACATAACA 59.024 37.037 0.00 0.00 0.00 2.41
7054 9011 6.379703 AGTCACTCAAGCTAGATACAGAACAT 59.620 38.462 0.00 0.00 0.00 2.71
7055 9012 5.712446 AGTCACTCAAGCTAGATACAGAACA 59.288 40.000 0.00 0.00 0.00 3.18
7056 9013 6.202516 AGTCACTCAAGCTAGATACAGAAC 57.797 41.667 0.00 0.00 0.00 3.01
7057 9014 6.544197 CCTAGTCACTCAAGCTAGATACAGAA 59.456 42.308 0.00 0.00 35.48 3.02
7058 9015 6.058833 CCTAGTCACTCAAGCTAGATACAGA 58.941 44.000 0.00 0.00 35.48 3.41
7059 9016 5.278266 GCCTAGTCACTCAAGCTAGATACAG 60.278 48.000 0.00 0.00 35.48 2.74
7064 9021 3.374042 AGCCTAGTCACTCAAGCTAGA 57.626 47.619 0.00 0.00 35.48 2.43
7065 9022 4.180057 CAAAGCCTAGTCACTCAAGCTAG 58.820 47.826 0.00 0.00 33.81 3.42
7067 9024 2.289945 CCAAAGCCTAGTCACTCAAGCT 60.290 50.000 0.00 0.00 0.00 3.74
7068 9025 2.079925 CCAAAGCCTAGTCACTCAAGC 58.920 52.381 0.00 0.00 0.00 4.01
7069 9026 2.039084 ACCCAAAGCCTAGTCACTCAAG 59.961 50.000 0.00 0.00 0.00 3.02
7071 9028 1.729586 ACCCAAAGCCTAGTCACTCA 58.270 50.000 0.00 0.00 0.00 3.41
7072 9029 4.650131 AGTATACCCAAAGCCTAGTCACTC 59.350 45.833 0.00 0.00 0.00 3.51
7075 9032 7.685849 AATAAGTATACCCAAAGCCTAGTCA 57.314 36.000 0.00 0.00 0.00 3.41
7080 9037 9.574516 CTTCATTAATAAGTATACCCAAAGCCT 57.425 33.333 0.00 0.00 0.00 4.58
7081 9038 9.350951 ACTTCATTAATAAGTATACCCAAAGCC 57.649 33.333 0.00 0.00 35.44 4.35
7099 9056 9.639601 CATACACAAAGTCTAGTCACTTCATTA 57.360 33.333 0.00 0.00 35.45 1.90
7100 9057 7.604164 CCATACACAAAGTCTAGTCACTTCATT 59.396 37.037 0.00 0.00 35.45 2.57
7101 9058 7.099764 CCATACACAAAGTCTAGTCACTTCAT 58.900 38.462 0.00 0.00 35.45 2.57
7102 9059 6.041637 ACCATACACAAAGTCTAGTCACTTCA 59.958 38.462 0.00 0.00 35.45 3.02
7104 9061 6.420913 ACCATACACAAAGTCTAGTCACTT 57.579 37.500 0.00 0.00 38.30 3.16
7106 9063 6.812160 CCTAACCATACACAAAGTCTAGTCAC 59.188 42.308 0.00 0.00 0.00 3.67
7107 9064 6.573680 GCCTAACCATACACAAAGTCTAGTCA 60.574 42.308 0.00 0.00 0.00 3.41
7108 9065 5.811100 GCCTAACCATACACAAAGTCTAGTC 59.189 44.000 0.00 0.00 0.00 2.59
7109 9066 5.484290 AGCCTAACCATACACAAAGTCTAGT 59.516 40.000 0.00 0.00 0.00 2.57
7110 9067 5.978814 AGCCTAACCATACACAAAGTCTAG 58.021 41.667 0.00 0.00 0.00 2.43
7111 9068 6.368779 AAGCCTAACCATACACAAAGTCTA 57.631 37.500 0.00 0.00 0.00 2.59
7113 9070 5.240844 ACAAAGCCTAACCATACACAAAGTC 59.759 40.000 0.00 0.00 0.00 3.01
7114 9071 5.137551 ACAAAGCCTAACCATACACAAAGT 58.862 37.500 0.00 0.00 0.00 2.66
7115 9072 5.705609 ACAAAGCCTAACCATACACAAAG 57.294 39.130 0.00 0.00 0.00 2.77
7116 9073 7.584122 TTTACAAAGCCTAACCATACACAAA 57.416 32.000 0.00 0.00 0.00 2.83
7118 9075 6.546403 TGTTTTACAAAGCCTAACCATACACA 59.454 34.615 0.00 0.00 0.00 3.72
7119 9076 6.972722 TGTTTTACAAAGCCTAACCATACAC 58.027 36.000 0.00 0.00 0.00 2.90
7120 9077 6.999272 TCTGTTTTACAAAGCCTAACCATACA 59.001 34.615 0.00 0.00 0.00 2.29
7121 9078 7.174426 AGTCTGTTTTACAAAGCCTAACCATAC 59.826 37.037 0.00 0.00 0.00 2.39
7122 9079 7.174253 CAGTCTGTTTTACAAAGCCTAACCATA 59.826 37.037 0.00 0.00 0.00 2.74
7123 9080 6.016276 CAGTCTGTTTTACAAAGCCTAACCAT 60.016 38.462 0.00 0.00 0.00 3.55
7125 9082 5.298527 ACAGTCTGTTTTACAAAGCCTAACC 59.701 40.000 0.00 0.00 0.00 2.85
7126 9083 6.373186 ACAGTCTGTTTTACAAAGCCTAAC 57.627 37.500 0.00 0.00 0.00 2.34
7127 9084 6.376018 ACAACAGTCTGTTTTACAAAGCCTAA 59.624 34.615 15.73 0.00 38.77 2.69
7128 9085 5.883673 ACAACAGTCTGTTTTACAAAGCCTA 59.116 36.000 15.73 0.00 38.77 3.93
7130 9087 4.993905 ACAACAGTCTGTTTTACAAAGCC 58.006 39.130 15.73 0.00 38.77 4.35
7133 9090 9.562583 GAACATAACAACAGTCTGTTTTACAAA 57.437 29.630 15.73 0.00 38.77 2.83
7135 9092 8.394877 CAGAACATAACAACAGTCTGTTTTACA 58.605 33.333 15.73 2.45 38.77 2.41
7136 9093 8.395633 ACAGAACATAACAACAGTCTGTTTTAC 58.604 33.333 15.73 6.67 38.77 2.01
7160 9228 4.580995 GCCTAGTCACTCAAGCTAGATACA 59.419 45.833 0.00 0.00 35.48 2.29
7626 9698 3.108376 GGTACAGATTCCTGGAACTCCT 58.892 50.000 12.11 6.64 44.60 3.69
7636 9708 0.804933 GCGGTGTCGGTACAGATTCC 60.805 60.000 0.00 4.45 35.91 3.01
7808 9880 1.285962 CAACCACCCCCAAGATCATCT 59.714 52.381 0.00 0.00 0.00 2.90
7990 10062 5.241506 AGAAACCTCGAGCAAAATCATTTCA 59.758 36.000 6.99 0.00 0.00 2.69
8034 10106 1.937223 CACGCCTAAACTGTGTCAACA 59.063 47.619 0.00 0.00 34.34 3.33
8035 10107 1.937899 ACACGCCTAAACTGTGTCAAC 59.062 47.619 0.00 0.00 42.87 3.18
8036 10108 1.937223 CACACGCCTAAACTGTGTCAA 59.063 47.619 0.00 0.00 44.49 3.18
8037 10109 1.134640 ACACACGCCTAAACTGTGTCA 60.135 47.619 0.34 0.00 44.06 3.58
8038 10110 1.578583 ACACACGCCTAAACTGTGTC 58.421 50.000 0.34 0.00 44.06 3.67
8044 10116 0.589708 GGTCCAACACACGCCTAAAC 59.410 55.000 0.00 0.00 0.00 2.01
8048 10120 0.395173 AAAAGGTCCAACACACGCCT 60.395 50.000 0.00 0.00 0.00 5.52
8072 10144 2.423538 ACTCAAGTTGACAACAAGCACC 59.576 45.455 20.08 0.00 36.64 5.01
8073 10145 3.764885 ACTCAAGTTGACAACAAGCAC 57.235 42.857 20.08 0.00 36.64 4.40
8085 10157 3.129287 CACTTCCTGTTGCAACTCAAGTT 59.871 43.478 28.61 14.55 39.12 2.66
8086 10158 2.684881 CACTTCCTGTTGCAACTCAAGT 59.315 45.455 28.61 25.87 34.91 3.16
8087 10159 2.033801 CCACTTCCTGTTGCAACTCAAG 59.966 50.000 28.61 25.32 34.91 3.02
8227 10303 3.569049 AAACTCCCTCACGTCGCCG 62.569 63.158 0.00 0.00 40.83 6.46
8228 10304 1.301479 AAAACTCCCTCACGTCGCC 60.301 57.895 0.00 0.00 0.00 5.54
8230 10306 0.859232 CACAAAACTCCCTCACGTCG 59.141 55.000 0.00 0.00 0.00 5.12
8232 10308 2.702592 TTCACAAAACTCCCTCACGT 57.297 45.000 0.00 0.00 0.00 4.49
8233 10309 2.287009 GCTTTCACAAAACTCCCTCACG 60.287 50.000 0.00 0.00 0.00 4.35
8235 10311 3.011566 TGCTTTCACAAAACTCCCTCA 57.988 42.857 0.00 0.00 0.00 3.86
8236 10312 4.385358 TTTGCTTTCACAAAACTCCCTC 57.615 40.909 0.00 0.00 36.62 4.30
8237 10313 4.817318 TTTTGCTTTCACAAAACTCCCT 57.183 36.364 0.00 0.00 42.88 4.20
8259 10335 1.202879 ACCCGCTTGTTCAGGAAATCA 60.203 47.619 0.00 0.00 0.00 2.57
8309 10385 3.149648 ATTTGCCGGGAGCCATGC 61.150 61.111 2.18 0.00 42.71 4.06
8386 10462 3.720002 AGGTTAGTGGTGAAAGGGAAGAA 59.280 43.478 0.00 0.00 0.00 2.52
8422 10498 1.144057 CAGTGAGGTGGGGCGATAC 59.856 63.158 0.00 0.00 0.00 2.24
8447 10524 1.982226 TCTCGATCTAGAGAGGGAGGG 59.018 57.143 8.67 0.00 41.86 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.