Multiple sequence alignment - TraesCS3A01G170000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G170000 chr3A 100.000 2771 0 0 1 2771 178131215 178133985 0.000000e+00 5118.0
1 TraesCS3A01G170000 chr3A 86.550 171 18 5 2148 2317 582283208 582283374 1.700000e-42 183.0
2 TraesCS3A01G170000 chr3D 93.268 1946 106 9 22 1945 152557678 152555736 0.000000e+00 2844.0
3 TraesCS3A01G170000 chr3D 89.078 412 27 3 2021 2414 152555740 152555329 1.920000e-136 496.0
4 TraesCS3A01G170000 chr3D 86.740 362 21 8 2435 2771 152555333 152554974 7.240000e-101 377.0
5 TraesCS3A01G170000 chr3D 89.677 155 15 1 2155 2309 288550611 288550458 2.180000e-46 196.0
6 TraesCS3A01G170000 chr3B 95.891 1728 54 11 230 1949 223038039 223036321 0.000000e+00 2782.0
7 TraesCS3A01G170000 chr3B 93.077 780 30 8 2009 2771 223036229 223035457 0.000000e+00 1120.0
8 TraesCS3A01G170000 chr3B 87.264 212 20 5 30 235 223038299 223038089 4.610000e-58 235.0
9 TraesCS3A01G170000 chr3B 93.182 88 6 0 1936 2023 394954547 394954634 2.240000e-26 130.0
10 TraesCS3A01G170000 chr3B 87.059 85 11 0 1938 2022 25057610 25057526 2.270000e-16 97.1
11 TraesCS3A01G170000 chr4D 89.744 156 15 1 2155 2310 74079351 74079505 6.050000e-47 198.0
12 TraesCS3A01G170000 chr7D 89.744 156 13 3 2155 2309 454079077 454079230 2.180000e-46 196.0
13 TraesCS3A01G170000 chr7D 84.270 89 14 0 1935 2023 613328367 613328455 1.370000e-13 87.9
14 TraesCS3A01G170000 chr7D 97.222 36 1 0 2735 2770 535728030 535727995 8.290000e-06 62.1
15 TraesCS3A01G170000 chr5B 89.677 155 14 2 2155 2309 299602375 299602223 2.180000e-46 196.0
16 TraesCS3A01G170000 chr5B 83.516 91 13 2 1934 2023 472940440 472940351 1.770000e-12 84.2
17 TraesCS3A01G170000 chr1D 89.677 155 15 1 2155 2309 193504383 193504536 2.180000e-46 196.0
18 TraesCS3A01G170000 chr1D 89.888 89 8 1 1935 2023 464733131 464733218 2.260000e-21 113.0
19 TraesCS3A01G170000 chr5A 86.207 174 16 8 2138 2309 86662004 86662171 6.100000e-42 182.0
20 TraesCS3A01G170000 chr4A 88.636 88 9 1 1935 2022 585459851 585459937 3.770000e-19 106.0
21 TraesCS3A01G170000 chr4A 86.364 88 12 0 1935 2022 739709959 739709872 2.270000e-16 97.1
22 TraesCS3A01G170000 chr4A 86.364 88 12 0 1935 2022 742105451 742105364 2.270000e-16 97.1
23 TraesCS3A01G170000 chr4A 84.444 90 12 1 1935 2022 739785051 739785140 1.370000e-13 87.9
24 TraesCS3A01G170000 chr4B 77.778 135 29 1 1614 1747 529570475 529570341 6.360000e-12 82.4
25 TraesCS3A01G170000 chr7B 97.297 37 1 0 2735 2771 577563655 577563619 2.300000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G170000 chr3A 178131215 178133985 2770 False 5118 5118 100.000000 1 2771 1 chr3A.!!$F1 2770
1 TraesCS3A01G170000 chr3D 152554974 152557678 2704 True 1239 2844 89.695333 22 2771 3 chr3D.!!$R2 2749
2 TraesCS3A01G170000 chr3B 223035457 223038299 2842 True 1379 2782 92.077333 30 2771 3 chr3B.!!$R2 2741

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 82 0.932955 TGGTTGGCATCCATATGGGT 59.067 50.0 21.78 12.51 38.11 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2007 2089 0.033306 GAAGGTACTCCCTCCGTCCT 60.033 60.0 0.0 0.0 45.47 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.997315 CGCCTCACCCTCTGTCCA 60.997 66.667 0.00 0.00 0.00 4.02
18 19 2.583441 CGCCTCACCCTCTGTCCAA 61.583 63.158 0.00 0.00 0.00 3.53
19 20 1.298014 GCCTCACCCTCTGTCCAAG 59.702 63.158 0.00 0.00 0.00 3.61
20 21 1.298014 CCTCACCCTCTGTCCAAGC 59.702 63.158 0.00 0.00 0.00 4.01
27 28 1.265236 CCTCTGTCCAAGCTGAGTCT 58.735 55.000 0.00 0.00 34.10 3.24
28 29 2.451490 CCTCTGTCCAAGCTGAGTCTA 58.549 52.381 0.00 0.00 34.10 2.59
43 44 3.135712 TGAGTCTACTGGGTTGCAAAAGA 59.864 43.478 0.00 0.00 0.00 2.52
51 55 4.081198 ACTGGGTTGCAAAAGATGTTTCAA 60.081 37.500 0.00 0.00 0.00 2.69
57 61 6.258507 GGTTGCAAAAGATGTTTCAAATGACT 59.741 34.615 0.00 0.00 0.00 3.41
78 82 0.932955 TGGTTGGCATCCATATGGGT 59.067 50.000 21.78 12.51 38.11 4.51
112 116 8.173130 CGTAAAGAGTTTTCACAACAAACTAGT 58.827 33.333 0.00 0.00 43.16 2.57
113 117 9.836076 GTAAAGAGTTTTCACAACAAACTAGTT 57.164 29.630 1.12 1.12 43.16 2.24
122 126 2.556622 CAACAAACTAGTTGGGCCGATT 59.443 45.455 14.59 0.00 43.89 3.34
137 143 1.825341 GATTGGCCAATGGGGAAGC 59.175 57.895 35.31 15.13 40.01 3.86
189 195 5.221904 TGTGAGATTGGATCCTGTTCAAAGA 60.222 40.000 14.23 0.00 0.00 2.52
278 339 7.922811 TGTGACATGTTATACTGCTCAGAATAG 59.077 37.037 0.00 0.00 0.00 1.73
300 361 1.540146 GGCCCAACCACACATTTTCAC 60.540 52.381 0.00 0.00 38.86 3.18
421 484 1.401539 GCATGTTTTTCTCGCTGGTCC 60.402 52.381 0.00 0.00 0.00 4.46
700 777 6.708054 AGAAATGTTAGGCTTCCGATATCTTG 59.292 38.462 0.00 0.00 0.00 3.02
937 1014 4.399303 CCTAACTGGTGGAAGCCATTTAAG 59.601 45.833 0.00 0.00 37.96 1.85
1050 1128 0.106708 TAATGCGGAGACCTGATGGC 59.893 55.000 0.00 0.00 36.63 4.40
1098 1176 1.423395 GAACTGTCCTGAAGCAGTCG 58.577 55.000 0.00 0.00 44.21 4.18
1101 1179 0.389166 CTGTCCTGAAGCAGTCGACC 60.389 60.000 13.01 0.00 0.00 4.79
1140 1218 2.633488 GATGACCTCAGGTACTTTGCC 58.367 52.381 0.00 0.00 34.60 4.52
1177 1255 0.756294 TTCTGTCAGGTTCGCTGGAA 59.244 50.000 0.00 0.00 0.00 3.53
1188 1266 1.071471 CGCTGGAACACTGGAGGTT 59.929 57.895 0.00 0.00 0.00 3.50
1189 1267 0.535102 CGCTGGAACACTGGAGGTTT 60.535 55.000 0.00 0.00 0.00 3.27
1236 1314 2.955068 CAACAATGTGTGCGTTGCA 58.045 47.368 0.00 0.00 43.49 4.08
1444 1522 1.481056 AAGTTCTCACCCGGGACAGG 61.481 60.000 32.02 13.80 0.00 4.00
1806 1887 4.527509 TTGTGATCTCTGTCTCCTGTTC 57.472 45.455 0.00 0.00 0.00 3.18
1883 1964 4.134563 TCCTGCAAACCTTTTAGTCAGTC 58.865 43.478 0.00 0.00 0.00 3.51
1898 1980 4.232641 GTCAGTCGACGCTTATCAAAAG 57.767 45.455 10.46 0.00 31.07 2.27
1949 2031 9.962809 ACTACATTATATACTACTCCCTCTGTC 57.037 37.037 0.00 0.00 0.00 3.51
1951 2033 7.183460 ACATTATATACTACTCCCTCTGTCCC 58.817 42.308 0.00 0.00 0.00 4.46
1953 2035 2.822707 TACTACTCCCTCTGTCCCAC 57.177 55.000 0.00 0.00 0.00 4.61
1956 2038 2.225650 ACTACTCCCTCTGTCCCACAAT 60.226 50.000 0.00 0.00 0.00 2.71
1957 2039 2.642171 ACTCCCTCTGTCCCACAATA 57.358 50.000 0.00 0.00 0.00 1.90
1958 2040 3.136641 ACTCCCTCTGTCCCACAATAT 57.863 47.619 0.00 0.00 0.00 1.28
1959 2041 4.280789 ACTCCCTCTGTCCCACAATATA 57.719 45.455 0.00 0.00 0.00 0.86
1960 2042 4.631234 ACTCCCTCTGTCCCACAATATAA 58.369 43.478 0.00 0.00 0.00 0.98
1962 2044 4.890988 TCCCTCTGTCCCACAATATAAGA 58.109 43.478 0.00 0.00 0.00 2.10
1963 2045 5.476983 TCCCTCTGTCCCACAATATAAGAT 58.523 41.667 0.00 0.00 0.00 2.40
1965 2047 5.473931 CCTCTGTCCCACAATATAAGATCG 58.526 45.833 0.00 0.00 0.00 3.69
1966 2048 5.468540 TCTGTCCCACAATATAAGATCGG 57.531 43.478 0.00 0.00 0.00 4.18
1967 2049 4.899457 TCTGTCCCACAATATAAGATCGGT 59.101 41.667 0.00 0.00 0.00 4.69
1968 2050 5.365605 TCTGTCCCACAATATAAGATCGGTT 59.634 40.000 0.00 0.00 0.00 4.44
1969 2051 5.996644 TGTCCCACAATATAAGATCGGTTT 58.003 37.500 0.00 0.00 0.00 3.27
1970 2052 6.419791 TGTCCCACAATATAAGATCGGTTTT 58.580 36.000 0.00 0.00 0.00 2.43
1971 2053 6.540914 TGTCCCACAATATAAGATCGGTTTTC 59.459 38.462 0.00 0.00 0.00 2.29
1972 2054 6.540914 GTCCCACAATATAAGATCGGTTTTCA 59.459 38.462 0.00 0.00 0.00 2.69
1973 2055 7.066525 GTCCCACAATATAAGATCGGTTTTCAA 59.933 37.037 0.00 0.00 0.00 2.69
1974 2056 7.282224 TCCCACAATATAAGATCGGTTTTCAAG 59.718 37.037 0.00 0.00 0.00 3.02
1975 2057 6.912591 CCACAATATAAGATCGGTTTTCAAGC 59.087 38.462 0.00 0.00 0.00 4.01
1976 2058 7.201732 CCACAATATAAGATCGGTTTTCAAGCT 60.202 37.037 0.00 0.00 0.00 3.74
1977 2059 8.826710 CACAATATAAGATCGGTTTTCAAGCTA 58.173 33.333 0.00 0.00 0.00 3.32
1979 2061 9.651718 CAATATAAGATCGGTTTTCAAGCTAAC 57.348 33.333 0.00 0.00 0.00 2.34
1980 2062 8.958119 ATATAAGATCGGTTTTCAAGCTAACA 57.042 30.769 0.00 0.00 0.00 2.41
2097 2216 6.059787 AGACATGCAAGTTCTCTTTATCCT 57.940 37.500 0.00 0.00 0.00 3.24
2109 2228 7.663493 AGTTCTCTTTATCCTTGAACCAGAAAG 59.337 37.037 0.00 0.00 38.10 2.62
2158 2280 5.148651 ACAAGGAAGCGTAGAATGTACTT 57.851 39.130 0.00 0.00 0.00 2.24
2231 2354 2.994186 ACAGACCCGTTTTAGTGTGT 57.006 45.000 0.00 0.00 35.82 3.72
2459 2595 0.966179 GGTGGTTCCTTTGGCGAATT 59.034 50.000 0.00 0.00 0.00 2.17
2511 2647 7.939039 TGGGGCTTATTATTCAGAAGATAAGTG 59.061 37.037 20.06 7.11 35.52 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.513026 CTTGGACAGAGGGTGAGGCG 62.513 65.000 0.00 0.00 0.00 5.52
1 2 1.298014 CTTGGACAGAGGGTGAGGC 59.702 63.158 0.00 0.00 0.00 4.70
2 3 1.197430 AGCTTGGACAGAGGGTGAGG 61.197 60.000 0.00 0.00 0.00 3.86
3 4 0.036577 CAGCTTGGACAGAGGGTGAG 60.037 60.000 0.00 0.00 0.00 3.51
4 5 0.471780 TCAGCTTGGACAGAGGGTGA 60.472 55.000 0.00 0.00 34.51 4.02
5 6 0.036577 CTCAGCTTGGACAGAGGGTG 60.037 60.000 0.00 0.00 0.00 4.61
6 7 0.472734 ACTCAGCTTGGACAGAGGGT 60.473 55.000 2.02 0.00 32.52 4.34
7 8 0.248843 GACTCAGCTTGGACAGAGGG 59.751 60.000 2.02 0.00 32.52 4.30
8 9 1.265236 AGACTCAGCTTGGACAGAGG 58.735 55.000 2.02 0.00 32.52 3.69
9 10 3.088532 AGTAGACTCAGCTTGGACAGAG 58.911 50.000 0.00 0.00 0.00 3.35
10 11 2.822561 CAGTAGACTCAGCTTGGACAGA 59.177 50.000 0.00 0.00 0.00 3.41
11 12 2.094286 CCAGTAGACTCAGCTTGGACAG 60.094 54.545 0.00 0.00 0.00 3.51
12 13 1.895798 CCAGTAGACTCAGCTTGGACA 59.104 52.381 0.00 0.00 0.00 4.02
13 14 1.205893 CCCAGTAGACTCAGCTTGGAC 59.794 57.143 0.00 0.00 0.00 4.02
14 15 1.203187 ACCCAGTAGACTCAGCTTGGA 60.203 52.381 0.00 0.00 0.00 3.53
15 16 1.270907 ACCCAGTAGACTCAGCTTGG 58.729 55.000 0.00 0.00 0.00 3.61
16 17 2.693069 CAACCCAGTAGACTCAGCTTG 58.307 52.381 0.00 0.00 0.00 4.01
17 18 1.002544 GCAACCCAGTAGACTCAGCTT 59.997 52.381 0.00 0.00 0.00 3.74
18 19 0.610687 GCAACCCAGTAGACTCAGCT 59.389 55.000 0.00 0.00 0.00 4.24
19 20 0.321671 TGCAACCCAGTAGACTCAGC 59.678 55.000 0.00 0.00 0.00 4.26
20 21 2.839486 TTGCAACCCAGTAGACTCAG 57.161 50.000 0.00 0.00 0.00 3.35
27 28 4.646945 TGAAACATCTTTTGCAACCCAGTA 59.353 37.500 0.00 0.00 0.00 2.74
28 29 3.450457 TGAAACATCTTTTGCAACCCAGT 59.550 39.130 0.00 0.00 0.00 4.00
43 44 4.262164 GCCAACCAGAGTCATTTGAAACAT 60.262 41.667 0.00 0.00 0.00 2.71
51 55 1.355381 TGGATGCCAACCAGAGTCATT 59.645 47.619 0.00 0.00 33.22 2.57
57 61 1.145531 CCCATATGGATGCCAACCAGA 59.854 52.381 24.00 0.00 40.89 3.86
78 82 4.456566 GTGAAAACTCTTTACGCCCCATTA 59.543 41.667 0.00 0.00 0.00 1.90
122 126 0.977108 GATTGCTTCCCCATTGGCCA 60.977 55.000 0.00 0.00 0.00 5.36
137 143 5.495926 AGGGCATGAGTTCTATAGGATTG 57.504 43.478 0.00 0.00 0.00 2.67
154 160 2.171237 CCAATCTCACACTCATAGGGCA 59.829 50.000 0.00 0.00 0.00 5.36
189 195 5.179452 AGGTACTGCTTCCACATGTAATT 57.821 39.130 0.00 0.00 37.18 1.40
268 329 0.466372 GTTGGGCCCCTATTCTGAGC 60.466 60.000 22.27 0.00 0.00 4.26
278 339 1.414866 AAAATGTGTGGTTGGGCCCC 61.415 55.000 22.27 3.89 36.04 5.80
421 484 1.062002 AGTCAACGTGTTCGCAACTTG 59.938 47.619 0.00 0.00 41.18 3.16
700 777 4.022849 AGTGACCAAAAATACAAGCAGAGC 60.023 41.667 0.00 0.00 0.00 4.09
751 828 7.489435 CCACACACATCACTAGTCTTGTTATAG 59.511 40.741 4.79 0.00 0.00 1.31
937 1014 1.912371 GAAGGCGCACCAGCTTGTAC 61.912 60.000 10.83 0.00 39.06 2.90
1050 1128 2.037136 CAGGACAGCCTTTGGAGCG 61.037 63.158 0.00 0.00 43.90 5.03
1098 1176 1.009389 CCAAGTCTCTCGCAACGGTC 61.009 60.000 0.00 0.00 0.00 4.79
1101 1179 0.734253 CCTCCAAGTCTCTCGCAACG 60.734 60.000 0.00 0.00 0.00 4.10
1140 1218 1.204113 AACCCCTCAAGCTCTCCTGG 61.204 60.000 0.00 0.00 0.00 4.45
1177 1255 2.561569 CGACTTGAAAACCTCCAGTGT 58.438 47.619 0.00 0.00 30.28 3.55
1254 1332 2.713167 ACCAACCTGCATAGCATATCCT 59.287 45.455 0.00 0.00 38.13 3.24
1444 1522 6.263168 TCTCCAATTTCAGAAACAGTTTCCTC 59.737 38.462 20.47 0.00 40.54 3.71
1806 1887 6.559810 CATACTTGACTACAGAACAGGAGAG 58.440 44.000 0.00 0.00 0.00 3.20
1883 1964 5.118050 TGACAGTTACTTTTGATAAGCGTCG 59.882 40.000 0.00 0.00 0.00 5.12
1887 1968 9.151471 TCATACTGACAGTTACTTTTGATAAGC 57.849 33.333 14.50 0.00 0.00 3.09
1898 1980 7.891183 ACTCACATTTCATACTGACAGTTAC 57.109 36.000 14.50 0.00 0.00 2.50
1924 2006 9.398538 GGACAGAGGGAGTAGTATATAATGTAG 57.601 40.741 0.00 0.00 0.00 2.74
1933 2015 2.585900 TGTGGGACAGAGGGAGTAGTAT 59.414 50.000 0.00 0.00 41.80 2.12
1946 2028 5.623956 AACCGATCTTATATTGTGGGACA 57.376 39.130 0.00 0.00 0.00 4.02
1949 2031 6.935741 TGAAAACCGATCTTATATTGTGGG 57.064 37.500 0.00 0.00 0.00 4.61
1951 2033 7.697691 AGCTTGAAAACCGATCTTATATTGTG 58.302 34.615 0.00 0.00 0.00 3.33
1953 2035 9.651718 GTTAGCTTGAAAACCGATCTTATATTG 57.348 33.333 0.00 0.00 0.00 1.90
1956 2038 8.958119 ATGTTAGCTTGAAAACCGATCTTATA 57.042 30.769 0.00 0.00 0.00 0.98
1957 2039 7.865706 ATGTTAGCTTGAAAACCGATCTTAT 57.134 32.000 0.00 0.00 0.00 1.73
1958 2040 8.420374 CTATGTTAGCTTGAAAACCGATCTTA 57.580 34.615 0.00 0.00 0.00 2.10
1959 2041 7.308782 CTATGTTAGCTTGAAAACCGATCTT 57.691 36.000 0.00 0.00 0.00 2.40
1960 2042 6.910536 CTATGTTAGCTTGAAAACCGATCT 57.089 37.500 0.00 0.00 0.00 2.75
1991 2073 9.148879 CCCTCCGTCCTATAATATAAGATCATT 57.851 37.037 0.00 0.00 0.00 2.57
1992 2074 8.511969 TCCCTCCGTCCTATAATATAAGATCAT 58.488 37.037 0.00 0.00 0.00 2.45
1993 2075 7.879558 TCCCTCCGTCCTATAATATAAGATCA 58.120 38.462 0.00 0.00 0.00 2.92
1995 2077 7.884891 ACTCCCTCCGTCCTATAATATAAGAT 58.115 38.462 0.00 0.00 0.00 2.40
1996 2078 7.281366 ACTCCCTCCGTCCTATAATATAAGA 57.719 40.000 0.00 0.00 0.00 2.10
1999 2081 6.680197 AGGTACTCCCTCCGTCCTATAATATA 59.320 42.308 0.00 0.00 40.71 0.86
2000 2082 5.495436 AGGTACTCCCTCCGTCCTATAATAT 59.505 44.000 0.00 0.00 40.71 1.28
2001 2083 4.854436 AGGTACTCCCTCCGTCCTATAATA 59.146 45.833 0.00 0.00 40.71 0.98
2002 2084 3.661654 AGGTACTCCCTCCGTCCTATAAT 59.338 47.826 0.00 0.00 40.71 1.28
2003 2085 3.059097 AGGTACTCCCTCCGTCCTATAA 58.941 50.000 0.00 0.00 40.71 0.98
2004 2086 2.711174 AGGTACTCCCTCCGTCCTATA 58.289 52.381 0.00 0.00 40.71 1.31
2007 2089 0.033306 GAAGGTACTCCCTCCGTCCT 60.033 60.000 0.00 0.00 45.47 3.85
2158 2280 7.335627 ACATCTTATAATTTGTGAACGGAGGA 58.664 34.615 0.91 0.00 0.00 3.71
2213 2336 3.375922 ACAAACACACTAAAACGGGTCTG 59.624 43.478 0.00 0.00 0.00 3.51
2231 2354 4.095632 TGCGAACTGAAATGAGTGAACAAA 59.904 37.500 0.00 0.00 0.00 2.83
2280 2403 5.812642 CCCTCCATTCACGTATATAAGATGC 59.187 44.000 2.47 0.00 0.00 3.91
2292 2415 2.159085 GGTTCTACTCCCTCCATTCACG 60.159 54.545 0.00 0.00 0.00 4.35
2362 2497 1.128507 CGCACGTGTACATCTGCATTT 59.871 47.619 18.38 0.00 0.00 2.32
2377 2512 1.058748 CAACGCCATTCTACGCACG 59.941 57.895 0.00 0.00 0.00 5.34
2417 2552 8.607459 CACCATTGTGATATTCTGAGTAACTTC 58.393 37.037 0.00 0.00 45.76 3.01
2469 2605 0.890996 CCCAGGTTCTGTGGTTCAGC 60.891 60.000 0.00 0.00 43.32 4.26
2476 2612 2.514458 AATAAGCCCCAGGTTCTGTG 57.486 50.000 0.00 0.00 34.89 3.66
2477 2613 4.229582 TGAATAATAAGCCCCAGGTTCTGT 59.770 41.667 0.00 0.00 34.89 3.41
2511 2647 2.610433 GCAATGGCTTCCTTTTACTGC 58.390 47.619 0.00 0.00 36.96 4.40
2572 2708 7.976734 ACCTTGATTTTGAAAACAAATGACGTA 59.023 29.630 0.00 0.00 31.63 3.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.