Multiple sequence alignment - TraesCS3A01G169800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G169800 chr3A 100.000 9852 0 0 1 9852 177903361 177893510 0.000000e+00 18194
1 TraesCS3A01G169800 chr3A 89.691 388 37 3 4 388 176137183 176136796 8.890000e-135 492
2 TraesCS3A01G169800 chr3A 79.496 595 86 21 8906 9466 177708696 177708104 3.340000e-104 390
3 TraesCS3A01G169800 chr3A 90.323 186 13 3 9667 9852 166928637 166928457 1.280000e-58 239
4 TraesCS3A01G169800 chr3A 91.026 156 13 1 9667 9821 181135138 181134983 1.000000e-49 209
5 TraesCS3A01G169800 chr3A 90.123 162 12 2 8901 9062 177543707 177543550 3.610000e-49 207
6 TraesCS3A01G169800 chr3A 87.654 162 17 3 8901 9062 177545108 177544950 1.690000e-42 185
7 TraesCS3A01G169800 chr3B 94.861 8717 321 61 732 9401 223511653 223520289 0.000000e+00 13498
8 TraesCS3A01G169800 chr3B 89.182 379 18 10 9482 9852 223525749 223526112 1.510000e-122 451
9 TraesCS3A01G169800 chr3B 90.323 186 13 3 9667 9852 221985444 221985264 1.280000e-58 239
10 TraesCS3A01G169800 chr3B 92.754 69 5 0 9399 9467 223525698 223525766 6.300000e-17 100
11 TraesCS3A01G169800 chr3D 97.676 6843 104 18 2607 9434 152689324 152696126 0.000000e+00 11705
12 TraesCS3A01G169800 chr3D 96.030 1889 62 8 735 2620 152687287 152689165 0.000000e+00 3061
13 TraesCS3A01G169800 chr3D 96.821 346 5 4 9507 9852 152696350 152696689 3.090000e-159 573
14 TraesCS3A01G169800 chr3D 81.347 579 59 21 8927 9466 152818996 152819564 9.150000e-115 425
15 TraesCS3A01G169800 chr3D 80.466 558 79 18 8901 9432 152856071 152856624 5.540000e-107 399
16 TraesCS3A01G169800 chr3D 85.240 271 22 9 428 682 152687021 152687289 7.590000e-66 263
17 TraesCS3A01G169800 chr3D 89.247 186 15 3 9667 9852 149549054 149548874 2.770000e-55 228
18 TraesCS3A01G169800 chr3D 91.613 155 13 0 9667 9821 149764032 149764186 2.160000e-51 215
19 TraesCS3A01G169800 chrUn 91.049 391 32 3 1 388 82044845 82045235 8.770000e-145 525
20 TraesCS3A01G169800 chr7A 91.049 391 32 3 1 388 36502685 36502295 8.770000e-145 525
21 TraesCS3A01G169800 chr7A 90.281 391 35 3 1 388 689933179 689933569 8.830000e-140 508
22 TraesCS3A01G169800 chr7A 89.487 390 39 2 1 388 517121072 517120683 8.890000e-135 492
23 TraesCS3A01G169800 chr5A 90.231 389 34 4 3 388 7602357 7602744 1.140000e-138 505
24 TraesCS3A01G169800 chr6A 90.051 392 34 5 1 388 30771862 30772252 4.110000e-138 503
25 TraesCS3A01G169800 chr6A 89.770 391 36 4 1 388 3284240 3284629 1.910000e-136 497
26 TraesCS3A01G169800 chr2A 89.974 389 36 3 3 388 21023804 21023416 5.310000e-137 499


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G169800 chr3A 177893510 177903361 9851 True 18194.0 18194 100.00000 1 9852 1 chr3A.!!$R4 9851
1 TraesCS3A01G169800 chr3A 177708104 177708696 592 True 390.0 390 79.49600 8906 9466 1 chr3A.!!$R3 560
2 TraesCS3A01G169800 chr3B 223511653 223520289 8636 False 13498.0 13498 94.86100 732 9401 1 chr3B.!!$F1 8669
3 TraesCS3A01G169800 chr3D 152687021 152696689 9668 False 3900.5 11705 93.94175 428 9852 4 chr3D.!!$F4 9424
4 TraesCS3A01G169800 chr3D 152818996 152819564 568 False 425.0 425 81.34700 8927 9466 1 chr3D.!!$F2 539
5 TraesCS3A01G169800 chr3D 152856071 152856624 553 False 399.0 399 80.46600 8901 9432 1 chr3D.!!$F3 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
309 310 0.038166 GTCTGGGGGCATGACTGAAA 59.962 55.000 0.00 0.00 0.00 2.69 F
399 400 0.092351 CCGAACGGACGAAATGAACG 59.908 55.000 7.53 0.00 37.50 3.95 F
401 402 0.179233 GAACGGACGAAATGAACGGC 60.179 55.000 0.00 0.00 38.12 5.68 F
1132 1152 0.464554 GGTTCATCCCTGTAGGCTGC 60.465 60.000 0.00 0.00 34.51 5.25 F
1247 1270 2.202479 GAGCGCGTGGCCATTTTC 60.202 61.111 9.72 0.00 45.17 2.29 F
2255 2281 0.464554 GGGTCAGTGGGCAAGATAGC 60.465 60.000 0.00 0.00 0.00 2.97 F
3138 3339 1.448985 TCCTTCGCCATTAGTTGCAC 58.551 50.000 0.00 0.00 0.00 4.57 F
3784 3987 2.602878 GTCTACATTTCTGTTCGCCGA 58.397 47.619 0.00 0.00 36.79 5.54 F
3863 4066 4.253685 TCAAGGCTAATTACAGCTGACAC 58.746 43.478 23.35 1.96 41.50 3.67 F
5293 5514 4.260620 CCATATAAGCCACAAACTACACGC 60.261 45.833 0.00 0.00 0.00 5.34 F
5966 6187 2.949447 AGCAATGGTCTGTTCAACCTT 58.051 42.857 0.00 0.00 37.69 3.50 F
6102 6323 1.261619 CTCACAGGTTTGAGTTCGCAC 59.738 52.381 0.00 0.00 38.61 5.34 F
7574 7796 0.459237 GTGCCAGTCGGACATGAGAG 60.459 60.000 11.27 0.00 0.00 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1939 1965 0.034756 TGCCGTTTCTTAGAGCAGCA 59.965 50.000 0.00 0.0 0.00 4.41 R
2191 2217 1.801771 CAACCAAATTAGCGTCGTGGA 59.198 47.619 4.48 0.0 33.39 4.02 R
2262 2288 4.838423 TGGTAGGACTTCAGAGAATTGACA 59.162 41.667 0.00 0.0 0.00 3.58 R
2539 2565 1.200948 ACGGCGACAGAGGTTACTTAC 59.799 52.381 16.62 0.0 0.00 2.34 R
3117 3318 2.423538 GTGCAACTAATGGCGAAGGAAT 59.576 45.455 0.00 0.0 0.00 3.01 R
4081 4284 3.211045 GTGTCTTTAGGCTTGTCAACCA 58.789 45.455 0.00 0.0 0.00 3.67 R
4953 5171 3.689649 ACCGCTAAAGCTTGTAAATGGAG 59.310 43.478 0.00 0.0 39.32 3.86 R
5439 5660 3.654806 CCCTGTAAATCTCATCTGGGGAT 59.345 47.826 0.00 0.0 36.07 3.85 R
5695 5916 4.333649 AGATCGTTCAGTGCCATGTAATTG 59.666 41.667 0.00 0.0 0.00 2.32 R
6102 6323 3.933861 AAAGGTTACTGGGGCAGATAG 57.066 47.619 0.00 0.0 35.18 2.08 R
7556 7778 0.900182 ACTCTCATGTCCGACTGGCA 60.900 55.000 0.00 0.0 34.14 4.92 R
7580 7802 6.436261 ACCGTATCATCTGTTGTAACTATCG 58.564 40.000 0.00 0.0 0.00 2.92 R
9498 9765 0.327924 TTGCATCCCGACAGGTGATT 59.672 50.000 0.00 0.0 36.75 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.499737 CCAAGCCCGCGTGATGAC 61.500 66.667 4.92 0.00 0.00 3.06
37 38 2.880879 CGTGATGACGCCTCCACG 60.881 66.667 0.00 0.00 44.66 4.94
38 39 2.571757 GTGATGACGCCTCCACGA 59.428 61.111 0.00 0.00 36.70 4.35
39 40 1.805945 GTGATGACGCCTCCACGAC 60.806 63.158 0.00 0.00 36.70 4.34
40 41 2.579787 GATGACGCCTCCACGACG 60.580 66.667 0.00 0.00 36.70 5.12
41 42 4.796231 ATGACGCCTCCACGACGC 62.796 66.667 0.00 0.00 36.70 5.19
50 51 4.063967 CCACGACGCCCAGCAGTA 62.064 66.667 0.00 0.00 0.00 2.74
51 52 2.184322 CACGACGCCCAGCAGTAT 59.816 61.111 0.00 0.00 0.00 2.12
52 53 1.878522 CACGACGCCCAGCAGTATC 60.879 63.158 0.00 0.00 0.00 2.24
53 54 2.655364 CGACGCCCAGCAGTATCG 60.655 66.667 0.00 0.00 0.00 2.92
54 55 2.805546 GACGCCCAGCAGTATCGA 59.194 61.111 0.00 0.00 0.00 3.59
55 56 1.364171 GACGCCCAGCAGTATCGAT 59.636 57.895 2.16 2.16 0.00 3.59
56 57 0.941463 GACGCCCAGCAGTATCGATG 60.941 60.000 8.54 0.00 0.00 3.84
57 58 2.313172 CGCCCAGCAGTATCGATGC 61.313 63.158 8.54 6.81 44.18 3.91
58 59 1.963338 GCCCAGCAGTATCGATGCC 60.963 63.158 8.54 0.00 44.97 4.40
59 60 1.665916 CCCAGCAGTATCGATGCCG 60.666 63.158 8.54 0.00 44.97 5.69
60 61 2.313172 CCAGCAGTATCGATGCCGC 61.313 63.158 13.15 13.15 44.97 6.53
61 62 2.355126 AGCAGTATCGATGCCGCG 60.355 61.111 14.78 0.00 44.97 6.46
62 63 4.064491 GCAGTATCGATGCCGCGC 62.064 66.667 8.54 6.29 37.73 6.86
63 64 3.406361 CAGTATCGATGCCGCGCC 61.406 66.667 8.54 0.00 35.37 6.53
65 66 4.994201 GTATCGATGCCGCGCCGA 62.994 66.667 8.54 8.10 36.72 5.54
66 67 4.994201 TATCGATGCCGCGCCGAC 62.994 66.667 8.54 0.00 35.02 4.79
89 90 3.497932 CCAGCGCAGAAGCAGCTC 61.498 66.667 11.47 0.00 44.55 4.09
90 91 3.497932 CAGCGCAGAAGCAGCTCC 61.498 66.667 11.47 0.00 44.55 4.70
93 94 3.184683 CGCAGAAGCAGCTCCGAC 61.185 66.667 0.00 0.00 42.27 4.79
94 95 2.047844 GCAGAAGCAGCTCCGACA 60.048 61.111 0.00 0.00 41.58 4.35
95 96 2.386660 GCAGAAGCAGCTCCGACAC 61.387 63.158 0.00 0.00 41.58 3.67
96 97 1.739562 CAGAAGCAGCTCCGACACC 60.740 63.158 0.00 0.00 0.00 4.16
97 98 2.811317 GAAGCAGCTCCGACACCG 60.811 66.667 0.00 0.00 0.00 4.94
101 102 4.680237 CAGCTCCGACACCGCCAA 62.680 66.667 0.00 0.00 0.00 4.52
102 103 4.379243 AGCTCCGACACCGCCAAG 62.379 66.667 0.00 0.00 0.00 3.61
103 104 4.681978 GCTCCGACACCGCCAAGT 62.682 66.667 0.00 0.00 0.00 3.16
104 105 2.432628 CTCCGACACCGCCAAGTC 60.433 66.667 0.00 0.00 0.00 3.01
105 106 3.934391 CTCCGACACCGCCAAGTCC 62.934 68.421 0.00 0.00 0.00 3.85
108 109 4.980805 GACACCGCCAAGTCCGCA 62.981 66.667 0.00 0.00 0.00 5.69
116 117 3.276091 CAAGTCCGCACACGCCAA 61.276 61.111 0.00 0.00 38.22 4.52
117 118 3.276846 AAGTCCGCACACGCCAAC 61.277 61.111 0.00 0.00 38.22 3.77
118 119 3.750373 AAGTCCGCACACGCCAACT 62.750 57.895 0.00 0.00 38.22 3.16
119 120 3.712881 GTCCGCACACGCCAACTC 61.713 66.667 0.00 0.00 38.22 3.01
120 121 3.923864 TCCGCACACGCCAACTCT 61.924 61.111 0.00 0.00 38.22 3.24
121 122 3.716006 CCGCACACGCCAACTCTG 61.716 66.667 0.00 0.00 38.22 3.35
122 123 4.374702 CGCACACGCCAACTCTGC 62.375 66.667 0.00 0.00 33.11 4.26
123 124 4.030452 GCACACGCCAACTCTGCC 62.030 66.667 0.00 0.00 0.00 4.85
124 125 3.716006 CACACGCCAACTCTGCCG 61.716 66.667 0.00 0.00 0.00 5.69
125 126 3.923864 ACACGCCAACTCTGCCGA 61.924 61.111 0.00 0.00 0.00 5.54
126 127 3.414700 CACGCCAACTCTGCCGAC 61.415 66.667 0.00 0.00 0.00 4.79
130 131 4.379243 CCAACTCTGCCGACGCCT 62.379 66.667 0.00 0.00 0.00 5.52
131 132 3.114616 CAACTCTGCCGACGCCTG 61.115 66.667 0.00 0.00 0.00 4.85
132 133 4.379243 AACTCTGCCGACGCCTGG 62.379 66.667 0.00 0.00 0.00 4.45
152 153 2.898738 CAGAGCCTGCCGAGTGAT 59.101 61.111 0.00 0.00 0.00 3.06
153 154 1.521010 CAGAGCCTGCCGAGTGATG 60.521 63.158 0.00 0.00 0.00 3.07
154 155 2.894387 GAGCCTGCCGAGTGATGC 60.894 66.667 0.00 0.00 0.00 3.91
155 156 4.827087 AGCCTGCCGAGTGATGCG 62.827 66.667 0.00 0.00 0.00 4.73
156 157 4.819761 GCCTGCCGAGTGATGCGA 62.820 66.667 0.00 0.00 0.00 5.10
157 158 2.125552 CCTGCCGAGTGATGCGAA 60.126 61.111 0.00 0.00 0.00 4.70
158 159 2.456119 CCTGCCGAGTGATGCGAAC 61.456 63.158 0.00 0.00 0.00 3.95
159 160 2.792290 CTGCCGAGTGATGCGAACG 61.792 63.158 0.00 0.00 0.00 3.95
160 161 4.210304 GCCGAGTGATGCGAACGC 62.210 66.667 12.33 12.33 42.35 4.84
170 171 3.815352 GCGAACGCAAACTTCTGC 58.185 55.556 14.26 0.00 41.49 4.26
171 172 1.725973 GCGAACGCAAACTTCTGCC 60.726 57.895 14.26 0.00 39.26 4.85
172 173 1.438710 CGAACGCAAACTTCTGCCG 60.439 57.895 0.00 0.00 39.26 5.69
173 174 1.725973 GAACGCAAACTTCTGCCGC 60.726 57.895 0.00 0.00 39.26 6.53
174 175 2.117941 GAACGCAAACTTCTGCCGCT 62.118 55.000 0.00 0.00 39.26 5.52
175 176 2.117941 AACGCAAACTTCTGCCGCTC 62.118 55.000 0.00 0.00 39.26 5.03
176 177 2.320587 CGCAAACTTCTGCCGCTCT 61.321 57.895 0.00 0.00 39.26 4.09
177 178 1.014044 CGCAAACTTCTGCCGCTCTA 61.014 55.000 0.00 0.00 39.26 2.43
178 179 1.373570 GCAAACTTCTGCCGCTCTAT 58.626 50.000 0.00 0.00 36.25 1.98
179 180 1.740025 GCAAACTTCTGCCGCTCTATT 59.260 47.619 0.00 0.00 36.25 1.73
180 181 2.162408 GCAAACTTCTGCCGCTCTATTT 59.838 45.455 0.00 0.00 36.25 1.40
181 182 3.366374 GCAAACTTCTGCCGCTCTATTTT 60.366 43.478 0.00 0.00 36.25 1.82
182 183 4.798574 CAAACTTCTGCCGCTCTATTTTT 58.201 39.130 0.00 0.00 0.00 1.94
196 197 2.718731 TTTTTGTGCGCCTGTCCG 59.281 55.556 4.18 0.00 0.00 4.79
197 198 1.820056 TTTTTGTGCGCCTGTCCGA 60.820 52.632 4.18 0.00 0.00 4.55
198 199 1.169661 TTTTTGTGCGCCTGTCCGAT 61.170 50.000 4.18 0.00 0.00 4.18
199 200 1.573829 TTTTGTGCGCCTGTCCGATC 61.574 55.000 4.18 0.00 0.00 3.69
200 201 4.794439 TGTGCGCCTGTCCGATCG 62.794 66.667 8.51 8.51 0.00 3.69
201 202 4.796231 GTGCGCCTGTCCGATCGT 62.796 66.667 15.09 0.00 0.00 3.73
202 203 4.492160 TGCGCCTGTCCGATCGTC 62.492 66.667 15.09 7.45 0.00 4.20
204 205 3.872728 CGCCTGTCCGATCGTCGA 61.873 66.667 15.09 0.00 43.74 4.20
205 206 2.488355 GCCTGTCCGATCGTCGAA 59.512 61.111 15.09 0.00 43.74 3.71
206 207 1.872679 GCCTGTCCGATCGTCGAAC 60.873 63.158 15.09 7.24 43.74 3.95
207 208 1.801332 CCTGTCCGATCGTCGAACT 59.199 57.895 15.09 0.00 43.74 3.01
208 209 0.523546 CCTGTCCGATCGTCGAACTG 60.524 60.000 15.09 9.97 43.74 3.16
209 210 0.168348 CTGTCCGATCGTCGAACTGT 59.832 55.000 15.09 0.00 43.74 3.55
210 211 0.109919 TGTCCGATCGTCGAACTGTG 60.110 55.000 15.09 0.00 43.74 3.66
211 212 0.167470 GTCCGATCGTCGAACTGTGA 59.833 55.000 15.09 0.00 43.74 3.58
212 213 0.167470 TCCGATCGTCGAACTGTGAC 59.833 55.000 15.09 0.00 43.74 3.67
213 214 0.168348 CCGATCGTCGAACTGTGACT 59.832 55.000 15.09 0.00 43.74 3.41
214 215 1.401148 CCGATCGTCGAACTGTGACTT 60.401 52.381 15.09 0.00 43.74 3.01
215 216 1.644295 CGATCGTCGAACTGTGACTTG 59.356 52.381 7.03 0.00 43.74 3.16
216 217 1.387084 GATCGTCGAACTGTGACTTGC 59.613 52.381 0.00 0.00 34.17 4.01
217 218 0.933047 TCGTCGAACTGTGACTTGCG 60.933 55.000 0.00 0.00 34.17 4.85
218 219 0.933047 CGTCGAACTGTGACTTGCGA 60.933 55.000 0.00 0.00 34.17 5.10
219 220 1.419374 GTCGAACTGTGACTTGCGAT 58.581 50.000 0.00 0.00 33.54 4.58
220 221 1.387084 GTCGAACTGTGACTTGCGATC 59.613 52.381 0.00 0.00 33.54 3.69
221 222 0.363512 CGAACTGTGACTTGCGATCG 59.636 55.000 11.69 11.69 0.00 3.69
222 223 0.093705 GAACTGTGACTTGCGATCGC 59.906 55.000 32.48 32.48 42.35 4.58
223 224 1.291877 AACTGTGACTTGCGATCGCC 61.292 55.000 35.12 20.90 41.09 5.54
224 225 2.792290 CTGTGACTTGCGATCGCCG 61.792 63.158 35.12 27.17 41.09 6.46
225 226 3.554692 GTGACTTGCGATCGCCGG 61.555 66.667 35.12 27.75 41.09 6.13
226 227 3.754530 TGACTTGCGATCGCCGGA 61.755 61.111 35.12 20.47 41.09 5.14
227 228 2.279517 GACTTGCGATCGCCGGAT 60.280 61.111 35.12 19.10 38.72 4.18
228 229 1.883084 GACTTGCGATCGCCGGATT 60.883 57.895 35.12 16.35 38.72 3.01
229 230 1.429148 GACTTGCGATCGCCGGATTT 61.429 55.000 35.12 14.73 38.72 2.17
230 231 1.010797 CTTGCGATCGCCGGATTTG 60.011 57.895 35.12 14.17 38.72 2.32
231 232 1.705337 CTTGCGATCGCCGGATTTGT 61.705 55.000 35.12 0.00 38.72 2.83
232 233 1.976478 TTGCGATCGCCGGATTTGTG 61.976 55.000 35.12 0.00 38.72 3.33
233 234 2.461110 GCGATCGCCGGATTTGTGT 61.461 57.895 29.48 0.00 39.04 3.72
234 235 1.348250 CGATCGCCGGATTTGTGTG 59.652 57.895 5.05 0.00 31.51 3.82
235 236 1.081556 CGATCGCCGGATTTGTGTGA 61.082 55.000 5.05 0.00 31.51 3.58
236 237 0.373716 GATCGCCGGATTTGTGTGAC 59.626 55.000 5.05 0.00 31.51 3.67
237 238 1.358725 ATCGCCGGATTTGTGTGACG 61.359 55.000 5.05 0.00 0.00 4.35
238 239 2.314647 CGCCGGATTTGTGTGACGT 61.315 57.895 5.05 0.00 0.00 4.34
239 240 1.009903 CGCCGGATTTGTGTGACGTA 61.010 55.000 5.05 0.00 0.00 3.57
240 241 1.365699 GCCGGATTTGTGTGACGTAT 58.634 50.000 5.05 0.00 0.00 3.06
241 242 1.735571 GCCGGATTTGTGTGACGTATT 59.264 47.619 5.05 0.00 0.00 1.89
242 243 2.160813 GCCGGATTTGTGTGACGTATTT 59.839 45.455 5.05 0.00 0.00 1.40
243 244 3.365565 GCCGGATTTGTGTGACGTATTTT 60.366 43.478 5.05 0.00 0.00 1.82
244 245 4.155449 CCGGATTTGTGTGACGTATTTTG 58.845 43.478 0.00 0.00 0.00 2.44
245 246 4.319911 CCGGATTTGTGTGACGTATTTTGT 60.320 41.667 0.00 0.00 0.00 2.83
246 247 4.610951 CGGATTTGTGTGACGTATTTTGTG 59.389 41.667 0.00 0.00 0.00 3.33
247 248 5.559225 CGGATTTGTGTGACGTATTTTGTGA 60.559 40.000 0.00 0.00 0.00 3.58
248 249 5.851177 GGATTTGTGTGACGTATTTTGTGAG 59.149 40.000 0.00 0.00 0.00 3.51
249 250 3.870723 TGTGTGACGTATTTTGTGAGC 57.129 42.857 0.00 0.00 0.00 4.26
250 251 2.219903 TGTGTGACGTATTTTGTGAGCG 59.780 45.455 0.00 0.00 0.00 5.03
251 252 2.473609 GTGTGACGTATTTTGTGAGCGA 59.526 45.455 0.00 0.00 0.00 4.93
252 253 2.729360 TGTGACGTATTTTGTGAGCGAG 59.271 45.455 0.00 0.00 0.00 5.03
253 254 2.984471 GTGACGTATTTTGTGAGCGAGA 59.016 45.455 0.00 0.00 0.00 4.04
254 255 3.427528 GTGACGTATTTTGTGAGCGAGAA 59.572 43.478 0.00 0.00 0.00 2.87
255 256 3.427528 TGACGTATTTTGTGAGCGAGAAC 59.572 43.478 0.00 0.00 0.00 3.01
256 257 2.407361 ACGTATTTTGTGAGCGAGAACG 59.593 45.455 0.00 0.00 42.93 3.95
257 258 2.659757 CGTATTTTGTGAGCGAGAACGA 59.340 45.455 0.00 0.00 42.66 3.85
258 259 3.303495 CGTATTTTGTGAGCGAGAACGAT 59.697 43.478 0.00 0.00 42.66 3.73
265 266 3.337398 AGCGAGAACGATCAAGCTC 57.663 52.632 8.63 0.00 42.66 4.09
271 272 4.849111 GAGAACGATCAAGCTCGAATTT 57.151 40.909 0.00 0.00 41.12 1.82
272 273 5.209944 GAGAACGATCAAGCTCGAATTTT 57.790 39.130 0.00 0.00 41.12 1.82
273 274 5.209944 AGAACGATCAAGCTCGAATTTTC 57.790 39.130 0.00 0.00 41.12 2.29
274 275 4.093556 AGAACGATCAAGCTCGAATTTTCC 59.906 41.667 0.00 0.00 41.12 3.13
275 276 2.348666 ACGATCAAGCTCGAATTTTCCG 59.651 45.455 0.00 0.00 41.12 4.30
276 277 2.709636 GATCAAGCTCGAATTTTCCGC 58.290 47.619 0.00 0.00 0.00 5.54
277 278 0.442310 TCAAGCTCGAATTTTCCGCG 59.558 50.000 0.00 0.00 0.00 6.46
278 279 0.165944 CAAGCTCGAATTTTCCGCGT 59.834 50.000 4.92 0.00 0.00 6.01
279 280 0.442699 AAGCTCGAATTTTCCGCGTC 59.557 50.000 4.92 0.00 0.00 5.19
280 281 1.060465 GCTCGAATTTTCCGCGTCC 59.940 57.895 4.92 0.00 0.00 4.79
281 282 1.359459 GCTCGAATTTTCCGCGTCCT 61.359 55.000 4.92 0.00 0.00 3.85
282 283 0.370273 CTCGAATTTTCCGCGTCCTG 59.630 55.000 4.92 0.00 0.00 3.86
283 284 1.017177 TCGAATTTTCCGCGTCCTGG 61.017 55.000 4.92 0.00 0.00 4.45
284 285 1.800681 GAATTTTCCGCGTCCTGGG 59.199 57.895 4.92 0.00 0.00 4.45
285 286 0.675522 GAATTTTCCGCGTCCTGGGA 60.676 55.000 4.92 0.00 0.00 4.37
286 287 0.958876 AATTTTCCGCGTCCTGGGAC 60.959 55.000 4.92 9.55 41.40 4.46
294 295 4.436998 GTCCTGGGACGGCGTCTG 62.437 72.222 35.42 24.89 35.30 3.51
305 306 4.101448 GCGTCTGGGGGCATGACT 62.101 66.667 0.00 0.00 0.00 3.41
306 307 2.124983 CGTCTGGGGGCATGACTG 60.125 66.667 0.00 0.00 0.00 3.51
307 308 2.659063 CGTCTGGGGGCATGACTGA 61.659 63.158 0.00 0.00 0.00 3.41
308 309 1.685224 GTCTGGGGGCATGACTGAA 59.315 57.895 0.00 0.00 0.00 3.02
309 310 0.038166 GTCTGGGGGCATGACTGAAA 59.962 55.000 0.00 0.00 0.00 2.69
310 311 0.329261 TCTGGGGGCATGACTGAAAG 59.671 55.000 0.00 0.00 42.29 2.62
311 312 1.304381 TGGGGGCATGACTGAAAGC 60.304 57.895 0.00 0.00 37.60 3.51
312 313 1.000396 GGGGGCATGACTGAAAGCT 60.000 57.895 0.00 0.00 37.60 3.74
313 314 0.255890 GGGGGCATGACTGAAAGCTA 59.744 55.000 0.00 0.00 37.60 3.32
314 315 1.673168 GGGGCATGACTGAAAGCTAG 58.327 55.000 0.00 0.00 37.60 3.42
315 316 1.673168 GGGCATGACTGAAAGCTAGG 58.327 55.000 0.00 0.00 37.60 3.02
316 317 1.065126 GGGCATGACTGAAAGCTAGGT 60.065 52.381 0.00 0.00 37.60 3.08
317 318 2.284190 GGCATGACTGAAAGCTAGGTC 58.716 52.381 0.00 0.00 37.60 3.85
318 319 1.929836 GCATGACTGAAAGCTAGGTCG 59.070 52.381 0.00 0.00 37.60 4.79
319 320 1.929836 CATGACTGAAAGCTAGGTCGC 59.070 52.381 0.00 0.00 37.60 5.19
320 321 0.246635 TGACTGAAAGCTAGGTCGCC 59.753 55.000 0.00 0.00 37.60 5.54
321 322 0.460459 GACTGAAAGCTAGGTCGCCC 60.460 60.000 0.00 0.00 37.60 6.13
322 323 1.153349 CTGAAAGCTAGGTCGCCCC 60.153 63.158 0.00 0.00 0.00 5.80
323 324 1.899437 CTGAAAGCTAGGTCGCCCCA 61.899 60.000 0.00 0.00 34.66 4.96
324 325 1.153349 GAAAGCTAGGTCGCCCCAG 60.153 63.158 0.00 0.00 34.66 4.45
325 326 2.595009 GAAAGCTAGGTCGCCCCAGG 62.595 65.000 0.00 0.00 34.66 4.45
336 337 2.683475 CCCCAGGGGCCAAACTAG 59.317 66.667 13.35 0.00 35.35 2.57
337 338 2.043953 CCCAGGGGCCAAACTAGC 60.044 66.667 4.39 0.00 0.00 3.42
338 339 2.438434 CCAGGGGCCAAACTAGCG 60.438 66.667 4.39 0.00 0.00 4.26
339 340 3.134127 CAGGGGCCAAACTAGCGC 61.134 66.667 4.39 0.00 42.07 5.92
344 345 3.053896 GCCAAACTAGCGCCGGTT 61.054 61.111 2.29 6.80 0.00 4.44
345 346 3.035576 GCCAAACTAGCGCCGGTTC 62.036 63.158 14.41 0.00 0.00 3.62
346 347 1.669760 CCAAACTAGCGCCGGTTCA 60.670 57.895 14.41 0.00 0.00 3.18
347 348 1.495951 CAAACTAGCGCCGGTTCAC 59.504 57.895 14.41 0.00 0.00 3.18
348 349 1.670083 AAACTAGCGCCGGTTCACC 60.670 57.895 14.41 0.00 0.00 4.02
349 350 3.600898 AACTAGCGCCGGTTCACCC 62.601 63.158 2.29 0.00 0.00 4.61
350 351 4.832608 CTAGCGCCGGTTCACCCC 62.833 72.222 2.29 0.00 0.00 4.95
354 355 3.697747 CGCCGGTTCACCCCTGTA 61.698 66.667 1.90 0.00 0.00 2.74
355 356 2.046604 GCCGGTTCACCCCTGTAC 60.047 66.667 1.90 0.00 0.00 2.90
356 357 2.666812 CCGGTTCACCCCTGTACC 59.333 66.667 0.00 0.00 35.07 3.34
358 359 2.046604 GGTTCACCCCTGTACCGC 60.047 66.667 0.00 0.00 29.06 5.68
359 360 2.590114 GGTTCACCCCTGTACCGCT 61.590 63.158 0.00 0.00 29.06 5.52
360 361 1.259840 GGTTCACCCCTGTACCGCTA 61.260 60.000 0.00 0.00 29.06 4.26
361 362 0.828677 GTTCACCCCTGTACCGCTAT 59.171 55.000 0.00 0.00 0.00 2.97
362 363 1.208776 GTTCACCCCTGTACCGCTATT 59.791 52.381 0.00 0.00 0.00 1.73
363 364 1.575419 TCACCCCTGTACCGCTATTT 58.425 50.000 0.00 0.00 0.00 1.40
364 365 1.910671 TCACCCCTGTACCGCTATTTT 59.089 47.619 0.00 0.00 0.00 1.82
365 366 2.306512 TCACCCCTGTACCGCTATTTTT 59.693 45.455 0.00 0.00 0.00 1.94
393 394 4.685467 GGGGCCGAACGGACGAAA 62.685 66.667 17.63 0.00 46.59 3.46
394 395 2.435410 GGGCCGAACGGACGAAAT 60.435 61.111 17.63 0.00 46.59 2.17
395 396 2.746803 GGGCCGAACGGACGAAATG 61.747 63.158 17.63 0.00 46.59 2.32
396 397 1.738830 GGCCGAACGGACGAAATGA 60.739 57.895 17.63 0.00 37.50 2.57
397 398 1.293267 GGCCGAACGGACGAAATGAA 61.293 55.000 17.63 0.00 37.50 2.57
398 399 0.179233 GCCGAACGGACGAAATGAAC 60.179 55.000 17.63 0.00 37.50 3.18
399 400 0.092351 CCGAACGGACGAAATGAACG 59.908 55.000 7.53 0.00 37.50 3.95
400 401 0.092351 CGAACGGACGAAATGAACGG 59.908 55.000 0.00 0.00 35.09 4.44
401 402 0.179233 GAACGGACGAAATGAACGGC 60.179 55.000 0.00 0.00 38.12 5.68
402 403 1.893168 AACGGACGAAATGAACGGCG 61.893 55.000 4.80 4.80 39.91 6.46
403 404 2.782615 GGACGAAATGAACGGCGG 59.217 61.111 13.24 0.00 39.91 6.13
404 405 2.097728 GACGAAATGAACGGCGGC 59.902 61.111 13.24 0.00 34.93 6.53
405 406 3.695933 GACGAAATGAACGGCGGCG 62.696 63.158 31.06 31.06 34.93 6.46
406 407 4.514569 CGAAATGAACGGCGGCGG 62.515 66.667 35.05 17.25 0.00 6.13
407 408 4.829518 GAAATGAACGGCGGCGGC 62.830 66.667 35.05 24.75 38.90 6.53
425 426 2.679996 GGCGGCCCCAATGAAGTT 60.680 61.111 8.12 0.00 0.00 2.66
426 427 2.573340 GCGGCCCCAATGAAGTTG 59.427 61.111 0.00 0.00 37.57 3.16
427 428 2.573340 CGGCCCCAATGAAGTTGC 59.427 61.111 0.00 0.00 36.46 4.17
428 429 1.978617 CGGCCCCAATGAAGTTGCT 60.979 57.895 0.00 0.00 36.46 3.91
429 430 1.535204 CGGCCCCAATGAAGTTGCTT 61.535 55.000 0.00 0.00 36.46 3.91
449 450 9.409949 GTTGCTTTAATTATGATATCGATACGC 57.590 33.333 7.41 3.76 0.00 4.42
468 469 5.957842 ACGCTCAGATTGGAACATAAAAA 57.042 34.783 0.00 0.00 39.30 1.94
469 470 5.699839 ACGCTCAGATTGGAACATAAAAAC 58.300 37.500 0.00 0.00 39.30 2.43
470 471 5.240623 ACGCTCAGATTGGAACATAAAAACA 59.759 36.000 0.00 0.00 39.30 2.83
472 473 5.863935 GCTCAGATTGGAACATAAAAACACC 59.136 40.000 0.00 0.00 39.30 4.16
475 476 8.017418 TCAGATTGGAACATAAAAACACCTTT 57.983 30.769 0.00 0.00 39.30 3.11
476 477 7.925483 TCAGATTGGAACATAAAAACACCTTTG 59.075 33.333 0.00 0.00 39.30 2.77
477 478 7.171337 CAGATTGGAACATAAAAACACCTTTGG 59.829 37.037 0.00 0.00 39.30 3.28
478 479 4.698575 TGGAACATAAAAACACCTTTGGC 58.301 39.130 0.00 0.00 0.00 4.52
480 481 4.443598 GGAACATAAAAACACCTTTGGCCA 60.444 41.667 0.00 0.00 0.00 5.36
481 482 4.066646 ACATAAAAACACCTTTGGCCAC 57.933 40.909 3.88 0.00 0.00 5.01
482 483 3.709141 ACATAAAAACACCTTTGGCCACT 59.291 39.130 3.88 0.00 0.00 4.00
483 484 4.163268 ACATAAAAACACCTTTGGCCACTT 59.837 37.500 3.88 0.00 0.00 3.16
484 485 2.689553 AAAACACCTTTGGCCACTTG 57.310 45.000 3.88 2.25 0.00 3.16
485 486 1.859302 AAACACCTTTGGCCACTTGA 58.141 45.000 3.88 0.00 0.00 3.02
486 487 1.859302 AACACCTTTGGCCACTTGAA 58.141 45.000 3.88 0.00 0.00 2.69
487 488 2.086610 ACACCTTTGGCCACTTGAAT 57.913 45.000 3.88 0.00 0.00 2.57
488 489 2.397597 ACACCTTTGGCCACTTGAATT 58.602 42.857 3.88 0.00 0.00 2.17
489 490 2.102925 ACACCTTTGGCCACTTGAATTG 59.897 45.455 3.88 0.00 0.00 2.32
490 491 1.693606 ACCTTTGGCCACTTGAATTGG 59.306 47.619 3.88 0.00 37.17 3.16
493 494 3.306019 CCTTTGGCCACTTGAATTGGTAC 60.306 47.826 3.88 0.00 36.40 3.34
506 508 3.887621 ATTGGTACGATCGGGATATGG 57.112 47.619 20.98 0.00 0.00 2.74
545 547 4.083431 GCGAAATGATAGCTCAGATTGCAT 60.083 41.667 0.00 0.00 34.12 3.96
546 548 5.562307 GCGAAATGATAGCTCAGATTGCATT 60.562 40.000 0.00 0.00 34.12 3.56
558 560 9.160496 AGCTCAGATTGCATTAGTAAATATAGC 57.840 33.333 0.00 0.00 0.00 2.97
560 562 7.963981 TCAGATTGCATTAGTAAATATAGCGC 58.036 34.615 0.00 0.00 0.00 5.92
574 576 9.530129 GTAAATATAGCGCATCTTGTTTACATC 57.470 33.333 11.47 0.00 33.38 3.06
577 579 2.420022 AGCGCATCTTGTTTACATCCAC 59.580 45.455 11.47 0.00 0.00 4.02
582 584 4.669197 GCATCTTGTTTACATCCACACGAC 60.669 45.833 0.00 0.00 0.00 4.34
596 598 0.590732 CACGACACCGCCGATAGTAC 60.591 60.000 0.00 0.00 39.95 2.73
597 599 0.745845 ACGACACCGCCGATAGTACT 60.746 55.000 0.00 0.00 39.95 2.73
602 609 1.805345 CACCGCCGATAGTACTAGGAG 59.195 57.143 8.85 6.82 0.00 3.69
668 683 3.680786 TCCGACTGTCTGGCCACG 61.681 66.667 0.00 1.93 0.00 4.94
688 703 3.502237 CCATTGACTGGCAAGTTGC 57.498 52.632 19.87 19.87 44.08 4.17
697 712 3.670377 GCAAGTTGCCCCCACGAC 61.670 66.667 17.36 0.00 37.42 4.34
698 713 3.353836 CAAGTTGCCCCCACGACG 61.354 66.667 0.00 0.00 0.00 5.12
699 714 3.552384 AAGTTGCCCCCACGACGA 61.552 61.111 0.00 0.00 0.00 4.20
700 715 3.819877 AAGTTGCCCCCACGACGAC 62.820 63.158 0.00 0.00 0.00 4.34
706 721 4.303993 CCCCACGACGACGGGTTT 62.304 66.667 20.64 0.00 41.83 3.27
707 722 2.735857 CCCACGACGACGGGTTTC 60.736 66.667 12.58 0.00 41.83 2.78
708 723 2.735857 CCACGACGACGGGTTTCC 60.736 66.667 12.58 0.00 41.83 3.13
709 724 2.735857 CACGACGACGGGTTTCCC 60.736 66.667 12.58 0.00 44.46 3.97
719 734 2.197324 GGTTTCCCCACCAGCACA 59.803 61.111 0.00 0.00 36.73 4.57
720 735 1.903404 GGTTTCCCCACCAGCACAG 60.903 63.158 0.00 0.00 36.73 3.66
721 736 2.203480 TTTCCCCACCAGCACAGC 60.203 61.111 0.00 0.00 0.00 4.40
722 737 3.067084 TTTCCCCACCAGCACAGCA 62.067 57.895 0.00 0.00 0.00 4.41
723 738 3.790416 TTCCCCACCAGCACAGCAC 62.790 63.158 0.00 0.00 0.00 4.40
724 739 4.584518 CCCCACCAGCACAGCACA 62.585 66.667 0.00 0.00 0.00 4.57
725 740 2.981909 CCCACCAGCACAGCACAG 60.982 66.667 0.00 0.00 0.00 3.66
726 741 2.203252 CCACCAGCACAGCACAGT 60.203 61.111 0.00 0.00 0.00 3.55
727 742 1.071299 CCACCAGCACAGCACAGTA 59.929 57.895 0.00 0.00 0.00 2.74
728 743 1.230635 CCACCAGCACAGCACAGTAC 61.231 60.000 0.00 0.00 0.00 2.73
729 744 1.071471 ACCAGCACAGCACAGTACC 59.929 57.895 0.00 0.00 0.00 3.34
730 745 1.071299 CCAGCACAGCACAGTACCA 59.929 57.895 0.00 0.00 0.00 3.25
1030 1049 3.998672 GGAGGGTGTCGTTCCGCA 61.999 66.667 0.00 0.00 0.00 5.69
1132 1152 0.464554 GGTTCATCCCTGTAGGCTGC 60.465 60.000 0.00 0.00 34.51 5.25
1149 1169 2.811317 CAGCGCGGTGTCTCCTTC 60.811 66.667 29.05 0.00 0.00 3.46
1164 1184 1.884926 CTTCGAGATTCCTGCGGCC 60.885 63.158 0.00 0.00 0.00 6.13
1247 1270 2.202479 GAGCGCGTGGCCATTTTC 60.202 61.111 9.72 0.00 45.17 2.29
1361 1384 3.405831 CGGATATTGTGCCATCTGATGT 58.594 45.455 15.95 0.00 30.41 3.06
1371 1394 2.540361 GCCATCTGATGTGCAACGATTC 60.540 50.000 19.52 0.00 42.39 2.52
1372 1395 2.941064 CCATCTGATGTGCAACGATTCT 59.059 45.455 15.95 0.00 42.39 2.40
1404 1429 6.073548 CCTGCTTCTATATTGGTCAAATCGAC 60.074 42.308 0.00 0.00 44.57 4.20
1431 1456 1.193874 GTTGGCGGAAGTTCGTTGTAG 59.806 52.381 0.00 0.00 0.00 2.74
1439 1464 3.992427 GGAAGTTCGTTGTAGAAATCGGT 59.008 43.478 0.00 0.00 0.00 4.69
1487 1512 1.398390 GCATTCAACCCTAGTTCTGCG 59.602 52.381 0.00 0.00 32.45 5.18
1574 1599 3.057596 TGAAAGTGCAGCTTTTATTCCGG 60.058 43.478 13.21 0.00 46.54 5.14
1575 1600 2.200373 AGTGCAGCTTTTATTCCGGT 57.800 45.000 0.00 0.00 0.00 5.28
1576 1601 2.514803 AGTGCAGCTTTTATTCCGGTT 58.485 42.857 0.00 0.00 0.00 4.44
1634 1659 3.915437 AAACAATGTTAGTTGCGGAGG 57.085 42.857 0.00 0.00 32.32 4.30
2062 2088 5.339990 CCATCGACGGCTTTTCAATATTTT 58.660 37.500 0.00 0.00 0.00 1.82
2157 2183 5.959583 AAGGTTTGCTAGCTATCCTTACT 57.040 39.130 28.89 13.77 32.17 2.24
2191 2217 4.080186 TGATGATGGATCGATGCCCATTAT 60.080 41.667 18.03 18.03 42.80 1.28
2255 2281 0.464554 GGGTCAGTGGGCAAGATAGC 60.465 60.000 0.00 0.00 0.00 2.97
2262 2288 2.240667 AGTGGGCAAGATAGCTGATTGT 59.759 45.455 0.00 0.00 34.17 2.71
2539 2565 5.886960 AGTGCTTAAATGTTTCTAGCTGG 57.113 39.130 0.00 0.00 32.44 4.85
2558 2584 1.468736 GGTAAGTAACCTCTGTCGCCG 60.469 57.143 0.00 0.00 45.75 6.46
2572 2598 1.889105 CGCCGTATGGATGCTGCTT 60.889 57.895 4.73 0.00 37.49 3.91
2622 2820 4.442073 GCTATTTATGTTTTGCTCCATGCG 59.558 41.667 0.00 0.00 46.63 4.73
2771 2969 1.468914 GGAAAATCTGAACCAGGACGC 59.531 52.381 0.00 0.00 31.51 5.19
2872 3073 7.027874 ACTTATTTTCCAGGATCCAGTAACA 57.972 36.000 15.82 0.00 0.00 2.41
2998 3199 2.744202 CAATTTAGTCGCACTCAGGCTT 59.256 45.455 0.00 0.00 0.00 4.35
3032 3233 1.966451 GCAGGCCGCAACAGTAAGT 60.966 57.895 13.61 0.00 41.79 2.24
3109 3310 6.718912 TGTCAAATGGTTGAGAATCCACATAA 59.281 34.615 0.00 0.00 44.44 1.90
3138 3339 1.448985 TCCTTCGCCATTAGTTGCAC 58.551 50.000 0.00 0.00 0.00 4.57
3151 3352 7.645340 GCCATTAGTTGCACTGTTATTATTCAG 59.355 37.037 0.00 0.00 37.65 3.02
3332 3533 8.131100 CCAATATGTGTGATAATGTGAACTTCC 58.869 37.037 0.00 0.00 0.00 3.46
3784 3987 2.602878 GTCTACATTTCTGTTCGCCGA 58.397 47.619 0.00 0.00 36.79 5.54
3863 4066 4.253685 TCAAGGCTAATTACAGCTGACAC 58.746 43.478 23.35 1.96 41.50 3.67
3946 4149 7.043059 GCTACGAAAAATGAACCAAATCAACAA 60.043 33.333 0.00 0.00 32.06 2.83
4375 4581 6.183360 GCCTGAAGAACACAATACCAGAATAC 60.183 42.308 0.00 0.00 0.00 1.89
4639 4857 6.047870 AGATCTCATGCTGCTAACTAAAGTG 58.952 40.000 0.00 0.00 0.00 3.16
4644 4862 7.278646 TCTCATGCTGCTAACTAAAGTGTATTG 59.721 37.037 0.00 0.00 0.00 1.90
4731 4949 9.277783 ACTGCAATGATCTTATATGTTCCTTAC 57.722 33.333 0.00 0.00 0.00 2.34
4740 4958 7.573710 TCTTATATGTTCCTTACATGGCAAGT 58.426 34.615 0.00 0.00 46.81 3.16
4953 5171 4.567159 CAGTTCCAGGTATTCGAAGTAAGC 59.433 45.833 3.35 1.54 0.00 3.09
5293 5514 4.260620 CCATATAAGCCACAAACTACACGC 60.261 45.833 0.00 0.00 0.00 5.34
5395 5616 6.646267 TGGTCTAAACTGTACTTGAAGTTGT 58.354 36.000 1.97 0.00 36.75 3.32
5812 6033 3.511934 AGCAAGTTCGTGATCTCCTAAGT 59.488 43.478 0.00 0.00 0.00 2.24
5890 6111 3.541242 TTTTGTCCCAGTGGAATCCAT 57.459 42.857 11.95 0.00 44.07 3.41
5966 6187 2.949447 AGCAATGGTCTGTTCAACCTT 58.051 42.857 0.00 0.00 37.69 3.50
6080 6301 5.587844 AGCAATGAACAATAGAAGCAGTAGG 59.412 40.000 0.00 0.00 0.00 3.18
6102 6323 1.261619 CTCACAGGTTTGAGTTCGCAC 59.738 52.381 0.00 0.00 38.61 5.34
7053 7275 8.644619 CAGAATTTTGCATTTATCTCTGTGTTG 58.355 33.333 0.00 0.00 0.00 3.33
7414 7636 4.256920 GACAAGGAGTGCAGTATTGATGT 58.743 43.478 20.35 10.51 0.00 3.06
7423 7645 4.455533 GTGCAGTATTGATGTCTTCAACCA 59.544 41.667 3.44 0.00 46.80 3.67
7556 7778 4.927267 TGTCCCCAACATTATCTGAAGT 57.073 40.909 0.00 0.00 31.20 3.01
7574 7796 0.459237 GTGCCAGTCGGACATGAGAG 60.459 60.000 11.27 0.00 0.00 3.20
7580 7802 2.088423 AGTCGGACATGAGAGTGAGAC 58.912 52.381 11.27 0.00 0.00 3.36
8899 9122 2.237893 TCCATCTCAAGCTGAGCATGAA 59.762 45.455 13.65 5.57 43.95 2.57
9076 9299 5.296780 GGTTACATAACATGTGGATGGAGTG 59.703 44.000 19.80 5.97 44.60 3.51
9139 9370 9.506018 TTTGTTGTATTCTGAATCTCTGAATGA 57.494 29.630 6.10 3.70 42.46 2.57
9183 9414 4.708177 TGATTCAGATTAACCTAGCAGCC 58.292 43.478 0.00 0.00 0.00 4.85
9225 9456 6.949352 ATGTAATTTCATGGCTACTTCTGG 57.051 37.500 0.00 0.00 0.00 3.86
9248 9479 5.746721 GGAACATTTTTGTAACTGCTCGTTT 59.253 36.000 0.00 0.00 37.05 3.60
9335 9595 6.752815 GCTTACGCTTTAGAGTCTTCACTTAT 59.247 38.462 0.00 0.00 30.63 1.73
9365 9628 5.248248 TCCATCAGTTTCAGACAACCAGATA 59.752 40.000 0.00 0.00 0.00 1.98
9366 9629 5.352569 CCATCAGTTTCAGACAACCAGATAC 59.647 44.000 0.00 0.00 0.00 2.24
9367 9630 5.808366 TCAGTTTCAGACAACCAGATACT 57.192 39.130 0.00 0.00 0.00 2.12
9368 9631 6.174720 TCAGTTTCAGACAACCAGATACTT 57.825 37.500 0.00 0.00 0.00 2.24
9369 9632 5.991606 TCAGTTTCAGACAACCAGATACTTG 59.008 40.000 0.00 0.00 0.00 3.16
9371 9634 5.071788 AGTTTCAGACAACCAGATACTTGGA 59.928 40.000 0.00 0.00 40.87 3.53
9385 9648 3.418684 ACTTGGAGGCTCGTATTGTTT 57.581 42.857 8.69 0.00 0.00 2.83
9439 9706 9.076596 GTGGCAAGAAATATTAGATTTGACAAC 57.923 33.333 9.78 4.11 35.54 3.32
9452 9719 2.839486 TGACAACATGACTGGTCCTC 57.161 50.000 0.00 0.00 0.00 3.71
9461 9728 4.141390 ACATGACTGGTCCTCTTTCAGTTT 60.141 41.667 0.00 0.00 41.24 2.66
9466 9733 6.002653 ACTGGTCCTCTTTCAGTTTAGTTT 57.997 37.500 0.00 0.00 38.44 2.66
9467 9734 6.056236 ACTGGTCCTCTTTCAGTTTAGTTTC 58.944 40.000 0.00 0.00 38.44 2.78
9468 9735 6.126739 ACTGGTCCTCTTTCAGTTTAGTTTCT 60.127 38.462 0.00 0.00 38.44 2.52
9469 9736 6.659824 TGGTCCTCTTTCAGTTTAGTTTCTT 58.340 36.000 0.00 0.00 0.00 2.52
9470 9737 7.116736 TGGTCCTCTTTCAGTTTAGTTTCTTT 58.883 34.615 0.00 0.00 0.00 2.52
9471 9738 7.614192 TGGTCCTCTTTCAGTTTAGTTTCTTTT 59.386 33.333 0.00 0.00 0.00 2.27
9472 9739 8.467598 GGTCCTCTTTCAGTTTAGTTTCTTTTT 58.532 33.333 0.00 0.00 0.00 1.94
9492 9759 6.538945 TTTTTGCAGGGACTCTTTTAGTTT 57.461 33.333 0.00 0.00 39.07 2.66
9493 9760 7.648039 TTTTTGCAGGGACTCTTTTAGTTTA 57.352 32.000 0.00 0.00 39.07 2.01
9494 9761 6.877611 TTTGCAGGGACTCTTTTAGTTTAG 57.122 37.500 0.00 0.00 39.07 1.85
9495 9762 5.562298 TGCAGGGACTCTTTTAGTTTAGT 57.438 39.130 0.00 0.00 39.07 2.24
9496 9763 5.937111 TGCAGGGACTCTTTTAGTTTAGTT 58.063 37.500 0.00 0.00 39.07 2.24
9497 9764 6.362248 TGCAGGGACTCTTTTAGTTTAGTTT 58.638 36.000 0.00 0.00 39.07 2.66
9498 9765 7.511268 TGCAGGGACTCTTTTAGTTTAGTTTA 58.489 34.615 0.00 0.00 39.07 2.01
9499 9766 7.994334 TGCAGGGACTCTTTTAGTTTAGTTTAA 59.006 33.333 0.00 0.00 39.07 1.52
9500 9767 9.011095 GCAGGGACTCTTTTAGTTTAGTTTAAT 57.989 33.333 0.00 0.00 39.07 1.40
9610 10028 0.324275 ACCGGCCTTTGCATGGTTAT 60.324 50.000 0.00 0.00 42.99 1.89
9611 10029 1.064314 ACCGGCCTTTGCATGGTTATA 60.064 47.619 0.00 0.00 42.99 0.98
9677 10095 3.620821 GGCACTAAGTCAGAATCTGAAGC 59.379 47.826 15.28 11.43 42.46 3.86
9705 10123 6.702282 GCTGTTGACTCTTTCAGTAAAGTAGT 59.298 38.462 0.00 0.00 42.36 2.73
9726 10144 2.108075 TGAGGGAAAAAGAGGCATGTCA 59.892 45.455 0.00 0.00 0.00 3.58
9819 10237 2.906389 TGGACAAGCAAGACTCCTGTAT 59.094 45.455 0.00 0.00 0.00 2.29
9820 10238 4.081642 GTGGACAAGCAAGACTCCTGTATA 60.082 45.833 0.00 0.00 0.00 1.47
9821 10239 4.160439 TGGACAAGCAAGACTCCTGTATAG 59.840 45.833 0.00 0.00 0.00 1.31
9827 10245 8.798402 ACAAGCAAGACTCCTGTATAGTATATC 58.202 37.037 0.00 0.00 0.00 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.499737 GTCATCACGCGGGCTTGG 61.500 66.667 12.47 0.00 0.00 3.61
12 13 3.853330 CGTCATCACGCGGGCTTG 61.853 66.667 12.47 8.04 39.69 4.01
21 22 1.805945 GTCGTGGAGGCGTCATCAC 60.806 63.158 8.91 7.18 0.00 3.06
22 23 2.571757 GTCGTGGAGGCGTCATCA 59.428 61.111 8.91 0.00 0.00 3.07
23 24 2.579787 CGTCGTGGAGGCGTCATC 60.580 66.667 8.91 0.00 44.05 2.92
33 34 3.371097 ATACTGCTGGGCGTCGTGG 62.371 63.158 0.00 0.00 0.00 4.94
34 35 1.878522 GATACTGCTGGGCGTCGTG 60.879 63.158 0.00 0.00 0.00 4.35
35 36 2.494918 GATACTGCTGGGCGTCGT 59.505 61.111 0.00 0.00 0.00 4.34
36 37 2.407846 ATCGATACTGCTGGGCGTCG 62.408 60.000 0.00 0.00 0.00 5.12
37 38 0.941463 CATCGATACTGCTGGGCGTC 60.941 60.000 0.00 0.00 0.00 5.19
38 39 1.068083 CATCGATACTGCTGGGCGT 59.932 57.895 0.00 0.00 0.00 5.68
39 40 2.313172 GCATCGATACTGCTGGGCG 61.313 63.158 0.00 0.00 36.68 6.13
40 41 1.963338 GGCATCGATACTGCTGGGC 60.963 63.158 9.20 0.84 39.60 5.36
41 42 1.665916 CGGCATCGATACTGCTGGG 60.666 63.158 9.95 0.00 41.36 4.45
42 43 2.313172 GCGGCATCGATACTGCTGG 61.313 63.158 20.16 8.90 44.47 4.85
43 44 2.652079 CGCGGCATCGATACTGCTG 61.652 63.158 23.61 18.46 46.55 4.41
44 45 2.355126 CGCGGCATCGATACTGCT 60.355 61.111 23.61 0.00 39.60 4.24
45 46 4.064491 GCGCGGCATCGATACTGC 62.064 66.667 17.97 17.97 39.00 4.40
46 47 3.406361 GGCGCGGCATCGATACTG 61.406 66.667 29.32 0.00 39.00 2.74
48 49 4.994201 TCGGCGCGGCATCGATAC 62.994 66.667 32.60 0.00 39.00 2.24
49 50 4.994201 GTCGGCGCGGCATCGATA 62.994 66.667 32.60 7.09 39.00 2.92
72 73 3.497932 GAGCTGCTTCTGCGCTGG 61.498 66.667 14.70 4.50 44.35 4.85
73 74 3.497932 GGAGCTGCTTCTGCGCTG 61.498 66.667 9.73 8.88 44.35 5.18
76 77 3.184683 GTCGGAGCTGCTTCTGCG 61.185 66.667 2.53 11.94 46.98 5.18
77 78 2.047844 TGTCGGAGCTGCTTCTGC 60.048 61.111 2.53 0.00 40.20 4.26
78 79 1.739562 GGTGTCGGAGCTGCTTCTG 60.740 63.158 2.53 2.63 0.00 3.02
79 80 2.659610 GGTGTCGGAGCTGCTTCT 59.340 61.111 2.53 0.00 0.00 2.85
80 81 2.811317 CGGTGTCGGAGCTGCTTC 60.811 66.667 2.53 0.00 0.00 3.86
84 85 4.680237 TTGGCGGTGTCGGAGCTG 62.680 66.667 0.00 0.00 36.79 4.24
85 86 4.379243 CTTGGCGGTGTCGGAGCT 62.379 66.667 0.00 0.00 36.79 4.09
86 87 4.681978 ACTTGGCGGTGTCGGAGC 62.682 66.667 0.00 0.00 36.79 4.70
87 88 2.432628 GACTTGGCGGTGTCGGAG 60.433 66.667 0.00 0.00 36.79 4.63
88 89 3.998672 GGACTTGGCGGTGTCGGA 61.999 66.667 0.00 0.00 36.79 4.55
91 92 4.980805 TGCGGACTTGGCGGTGTC 62.981 66.667 0.00 0.00 0.00 3.67
99 100 3.276091 TTGGCGTGTGCGGACTTG 61.276 61.111 8.99 1.39 44.10 3.16
100 101 3.276846 GTTGGCGTGTGCGGACTT 61.277 61.111 8.99 0.00 44.10 3.01
101 102 4.235762 AGTTGGCGTGTGCGGACT 62.236 61.111 8.99 0.00 44.10 3.85
102 103 3.712881 GAGTTGGCGTGTGCGGAC 61.713 66.667 0.00 0.00 44.10 4.79
103 104 3.923864 AGAGTTGGCGTGTGCGGA 61.924 61.111 0.00 0.00 44.10 5.54
104 105 3.716006 CAGAGTTGGCGTGTGCGG 61.716 66.667 0.00 0.00 44.10 5.69
105 106 4.374702 GCAGAGTTGGCGTGTGCG 62.375 66.667 0.00 0.00 44.10 5.34
106 107 4.030452 GGCAGAGTTGGCGTGTGC 62.030 66.667 0.00 0.00 40.30 4.57
113 114 4.379243 AGGCGTCGGCAGAGTTGG 62.379 66.667 21.79 0.00 42.47 3.77
114 115 3.114616 CAGGCGTCGGCAGAGTTG 61.115 66.667 21.79 6.07 42.47 3.16
115 116 4.379243 CCAGGCGTCGGCAGAGTT 62.379 66.667 21.79 0.00 42.47 3.01
135 136 1.521010 CATCACTCGGCAGGCTCTG 60.521 63.158 0.00 0.00 34.12 3.35
136 137 2.898738 CATCACTCGGCAGGCTCT 59.101 61.111 0.00 0.00 0.00 4.09
137 138 2.894387 GCATCACTCGGCAGGCTC 60.894 66.667 0.00 0.00 0.00 4.70
138 139 4.827087 CGCATCACTCGGCAGGCT 62.827 66.667 0.00 0.00 0.00 4.58
139 140 4.819761 TCGCATCACTCGGCAGGC 62.820 66.667 0.00 0.00 0.00 4.85
140 141 2.125552 TTCGCATCACTCGGCAGG 60.126 61.111 0.00 0.00 0.00 4.85
141 142 2.792290 CGTTCGCATCACTCGGCAG 61.792 63.158 0.00 0.00 0.00 4.85
142 143 2.809174 CGTTCGCATCACTCGGCA 60.809 61.111 0.00 0.00 0.00 5.69
143 144 4.210304 GCGTTCGCATCACTCGGC 62.210 66.667 12.33 0.00 0.00 5.54
144 145 1.896339 TTTGCGTTCGCATCACTCGG 61.896 55.000 20.02 0.00 41.05 4.63
145 146 0.785708 GTTTGCGTTCGCATCACTCG 60.786 55.000 20.02 0.00 41.05 4.18
146 147 0.512952 AGTTTGCGTTCGCATCACTC 59.487 50.000 20.02 9.31 41.05 3.51
147 148 0.944386 AAGTTTGCGTTCGCATCACT 59.056 45.000 20.02 19.80 41.05 3.41
148 149 1.069906 AGAAGTTTGCGTTCGCATCAC 60.070 47.619 20.02 18.13 41.05 3.06
149 150 1.069973 CAGAAGTTTGCGTTCGCATCA 60.070 47.619 20.02 7.96 41.05 3.07
150 151 1.595609 CAGAAGTTTGCGTTCGCATC 58.404 50.000 20.02 14.19 41.05 3.91
151 152 0.385974 GCAGAAGTTTGCGTTCGCAT 60.386 50.000 20.02 5.74 41.05 4.73
152 153 1.010125 GCAGAAGTTTGCGTTCGCA 60.010 52.632 15.82 15.82 39.59 5.10
153 154 1.725973 GGCAGAAGTTTGCGTTCGC 60.726 57.895 10.34 10.34 45.00 4.70
154 155 1.438710 CGGCAGAAGTTTGCGTTCG 60.439 57.895 0.00 0.00 45.00 3.95
155 156 1.725973 GCGGCAGAAGTTTGCGTTC 60.726 57.895 0.00 0.00 45.00 3.95
156 157 2.117941 GAGCGGCAGAAGTTTGCGTT 62.118 55.000 1.45 0.00 45.00 4.84
157 158 2.591715 AGCGGCAGAAGTTTGCGT 60.592 55.556 1.45 0.00 45.00 5.24
158 159 1.014044 TAGAGCGGCAGAAGTTTGCG 61.014 55.000 1.45 0.00 45.00 4.85
159 160 1.373570 ATAGAGCGGCAGAAGTTTGC 58.626 50.000 1.45 2.54 43.34 3.68
160 161 4.425577 AAAATAGAGCGGCAGAAGTTTG 57.574 40.909 1.45 0.00 0.00 2.93
179 180 1.169661 ATCGGACAGGCGCACAAAAA 61.170 50.000 10.83 0.00 0.00 1.94
180 181 1.573829 GATCGGACAGGCGCACAAAA 61.574 55.000 10.83 0.00 0.00 2.44
181 182 2.031919 ATCGGACAGGCGCACAAA 59.968 55.556 10.83 0.00 0.00 2.83
182 183 2.434185 GATCGGACAGGCGCACAA 60.434 61.111 10.83 0.00 0.00 3.33
183 184 4.794439 CGATCGGACAGGCGCACA 62.794 66.667 10.83 0.00 0.00 4.57
184 185 4.796231 ACGATCGGACAGGCGCAC 62.796 66.667 20.98 0.00 0.00 5.34
185 186 4.492160 GACGATCGGACAGGCGCA 62.492 66.667 20.98 0.00 0.00 6.09
187 188 3.391160 TTCGACGATCGGACAGGCG 62.391 63.158 20.98 12.32 40.88 5.52
188 189 2.488355 TTCGACGATCGGACAGGC 59.512 61.111 20.98 0.47 40.88 4.85
193 194 0.167470 GTCACAGTTCGACGATCGGA 59.833 55.000 20.98 4.89 40.88 4.55
194 195 0.168348 AGTCACAGTTCGACGATCGG 59.832 55.000 20.98 2.12 40.88 4.18
195 196 1.644295 CAAGTCACAGTTCGACGATCG 59.356 52.381 14.88 14.88 42.10 3.69
196 197 1.387084 GCAAGTCACAGTTCGACGATC 59.613 52.381 0.00 0.00 38.46 3.69
197 198 1.419374 GCAAGTCACAGTTCGACGAT 58.581 50.000 0.00 0.00 38.46 3.73
198 199 0.933047 CGCAAGTCACAGTTCGACGA 60.933 55.000 0.00 0.00 38.46 4.20
199 200 0.933047 TCGCAAGTCACAGTTCGACG 60.933 55.000 0.00 0.00 38.46 5.12
200 201 1.387084 GATCGCAAGTCACAGTTCGAC 59.613 52.381 0.00 0.00 39.48 4.20
201 202 1.698165 GATCGCAAGTCACAGTTCGA 58.302 50.000 0.00 0.00 39.48 3.71
202 203 0.363512 CGATCGCAAGTCACAGTTCG 59.636 55.000 0.26 0.00 39.48 3.95
203 204 0.093705 GCGATCGCAAGTCACAGTTC 59.906 55.000 33.89 0.00 41.49 3.01
204 205 1.291877 GGCGATCGCAAGTCACAGTT 61.292 55.000 38.00 0.00 44.11 3.16
205 206 1.738099 GGCGATCGCAAGTCACAGT 60.738 57.895 38.00 0.00 44.11 3.55
206 207 2.792290 CGGCGATCGCAAGTCACAG 61.792 63.158 38.00 15.91 44.11 3.66
207 208 2.809174 CGGCGATCGCAAGTCACA 60.809 61.111 38.00 0.00 44.11 3.58
208 209 3.554692 CCGGCGATCGCAAGTCAC 61.555 66.667 38.00 20.34 44.11 3.67
209 210 2.572095 AATCCGGCGATCGCAAGTCA 62.572 55.000 38.00 20.49 44.11 3.41
210 211 1.429148 AAATCCGGCGATCGCAAGTC 61.429 55.000 38.00 21.41 44.11 3.01
211 212 1.449601 AAATCCGGCGATCGCAAGT 60.450 52.632 38.00 20.85 44.11 3.16
212 213 1.010797 CAAATCCGGCGATCGCAAG 60.011 57.895 38.00 29.70 44.11 4.01
213 214 1.743623 ACAAATCCGGCGATCGCAA 60.744 52.632 38.00 24.19 44.11 4.85
214 215 2.125310 ACAAATCCGGCGATCGCA 60.125 55.556 38.00 21.11 44.11 5.10
215 216 2.324477 CACAAATCCGGCGATCGC 59.676 61.111 31.52 31.52 41.06 4.58
216 217 1.081556 TCACACAAATCCGGCGATCG 61.082 55.000 11.69 11.69 38.88 3.69
217 218 0.373716 GTCACACAAATCCGGCGATC 59.626 55.000 9.30 0.00 0.00 3.69
218 219 1.358725 CGTCACACAAATCCGGCGAT 61.359 55.000 9.30 0.00 0.00 4.58
219 220 2.024868 CGTCACACAAATCCGGCGA 61.025 57.895 9.30 0.00 0.00 5.54
220 221 1.009903 TACGTCACACAAATCCGGCG 61.010 55.000 0.00 0.00 0.00 6.46
221 222 1.365699 ATACGTCACACAAATCCGGC 58.634 50.000 0.00 0.00 0.00 6.13
222 223 4.155449 CAAAATACGTCACACAAATCCGG 58.845 43.478 0.00 0.00 0.00 5.14
223 224 4.610951 CACAAAATACGTCACACAAATCCG 59.389 41.667 0.00 0.00 0.00 4.18
224 225 5.753744 TCACAAAATACGTCACACAAATCC 58.246 37.500 0.00 0.00 0.00 3.01
225 226 5.339611 GCTCACAAAATACGTCACACAAATC 59.660 40.000 0.00 0.00 0.00 2.17
226 227 5.212194 GCTCACAAAATACGTCACACAAAT 58.788 37.500 0.00 0.00 0.00 2.32
227 228 4.593157 GCTCACAAAATACGTCACACAAA 58.407 39.130 0.00 0.00 0.00 2.83
228 229 3.302805 CGCTCACAAAATACGTCACACAA 60.303 43.478 0.00 0.00 0.00 3.33
229 230 2.219903 CGCTCACAAAATACGTCACACA 59.780 45.455 0.00 0.00 0.00 3.72
230 231 2.473609 TCGCTCACAAAATACGTCACAC 59.526 45.455 0.00 0.00 0.00 3.82
231 232 2.729360 CTCGCTCACAAAATACGTCACA 59.271 45.455 0.00 0.00 0.00 3.58
232 233 2.984471 TCTCGCTCACAAAATACGTCAC 59.016 45.455 0.00 0.00 0.00 3.67
233 234 3.291809 TCTCGCTCACAAAATACGTCA 57.708 42.857 0.00 0.00 0.00 4.35
234 235 3.479866 CGTTCTCGCTCACAAAATACGTC 60.480 47.826 0.00 0.00 0.00 4.34
235 236 2.407361 CGTTCTCGCTCACAAAATACGT 59.593 45.455 0.00 0.00 0.00 3.57
236 237 2.659757 TCGTTCTCGCTCACAAAATACG 59.340 45.455 0.00 0.00 36.96 3.06
237 238 4.326278 TGATCGTTCTCGCTCACAAAATAC 59.674 41.667 0.00 0.00 37.30 1.89
238 239 4.490743 TGATCGTTCTCGCTCACAAAATA 58.509 39.130 0.00 0.00 37.30 1.40
239 240 3.325870 TGATCGTTCTCGCTCACAAAAT 58.674 40.909 0.00 0.00 37.30 1.82
240 241 2.749776 TGATCGTTCTCGCTCACAAAA 58.250 42.857 0.00 0.00 37.30 2.44
241 242 2.432206 TGATCGTTCTCGCTCACAAA 57.568 45.000 0.00 0.00 37.30 2.83
242 243 2.328473 CTTGATCGTTCTCGCTCACAA 58.672 47.619 0.00 0.00 40.92 3.33
243 244 1.982612 CTTGATCGTTCTCGCTCACA 58.017 50.000 0.00 0.00 40.92 3.58
244 245 0.642800 GCTTGATCGTTCTCGCTCAC 59.357 55.000 0.00 0.00 40.92 3.51
245 246 0.528017 AGCTTGATCGTTCTCGCTCA 59.472 50.000 4.85 0.00 39.79 4.26
246 247 1.196200 GAGCTTGATCGTTCTCGCTC 58.804 55.000 16.22 16.22 37.54 5.03
247 248 0.524392 CGAGCTTGATCGTTCTCGCT 60.524 55.000 14.35 8.98 41.25 4.93
248 249 0.523546 TCGAGCTTGATCGTTCTCGC 60.524 55.000 19.13 3.46 45.51 5.03
249 250 1.896345 TTCGAGCTTGATCGTTCTCG 58.104 50.000 18.32 18.32 46.78 4.04
250 251 4.849111 AAATTCGAGCTTGATCGTTCTC 57.151 40.909 3.98 0.00 43.20 2.87
251 252 4.093556 GGAAAATTCGAGCTTGATCGTTCT 59.906 41.667 3.98 0.00 43.20 3.01
252 253 4.335272 GGAAAATTCGAGCTTGATCGTTC 58.665 43.478 3.98 8.23 43.20 3.95
253 254 3.181520 CGGAAAATTCGAGCTTGATCGTT 60.182 43.478 3.98 0.00 43.20 3.85
254 255 2.348666 CGGAAAATTCGAGCTTGATCGT 59.651 45.455 3.98 0.00 43.20 3.73
255 256 2.847254 GCGGAAAATTCGAGCTTGATCG 60.847 50.000 3.98 1.58 44.07 3.69
256 257 2.709636 GCGGAAAATTCGAGCTTGATC 58.290 47.619 3.98 0.00 0.00 2.92
257 258 1.062587 CGCGGAAAATTCGAGCTTGAT 59.937 47.619 3.98 0.00 32.04 2.57
258 259 0.442310 CGCGGAAAATTCGAGCTTGA 59.558 50.000 0.00 0.00 32.04 3.02
259 260 0.165944 ACGCGGAAAATTCGAGCTTG 59.834 50.000 12.47 0.00 32.04 4.01
260 261 0.442699 GACGCGGAAAATTCGAGCTT 59.557 50.000 12.47 2.24 32.04 3.74
261 262 1.359459 GGACGCGGAAAATTCGAGCT 61.359 55.000 12.47 0.00 32.04 4.09
262 263 1.060465 GGACGCGGAAAATTCGAGC 59.940 57.895 12.47 3.22 0.00 5.03
263 264 0.370273 CAGGACGCGGAAAATTCGAG 59.630 55.000 12.47 0.00 0.00 4.04
264 265 1.017177 CCAGGACGCGGAAAATTCGA 61.017 55.000 12.47 0.00 0.00 3.71
265 266 1.423845 CCAGGACGCGGAAAATTCG 59.576 57.895 12.47 0.00 0.00 3.34
266 267 0.675522 TCCCAGGACGCGGAAAATTC 60.676 55.000 12.47 0.00 0.00 2.17
267 268 0.958876 GTCCCAGGACGCGGAAAATT 60.959 55.000 12.47 0.00 35.30 1.82
268 269 1.376812 GTCCCAGGACGCGGAAAAT 60.377 57.895 12.47 0.00 35.30 1.82
269 270 2.031465 GTCCCAGGACGCGGAAAA 59.969 61.111 12.47 0.00 35.30 2.29
277 278 4.436998 CAGACGCCGTCCCAGGAC 62.437 72.222 14.60 6.77 41.40 3.85
288 289 4.101448 AGTCATGCCCCCAGACGC 62.101 66.667 0.00 0.00 37.36 5.19
289 290 2.124983 CAGTCATGCCCCCAGACG 60.125 66.667 0.00 0.00 37.36 4.18
290 291 0.038166 TTTCAGTCATGCCCCCAGAC 59.962 55.000 0.00 0.00 0.00 3.51
291 292 0.329261 CTTTCAGTCATGCCCCCAGA 59.671 55.000 0.00 0.00 0.00 3.86
292 293 1.318158 GCTTTCAGTCATGCCCCCAG 61.318 60.000 0.00 0.00 0.00 4.45
293 294 1.304381 GCTTTCAGTCATGCCCCCA 60.304 57.895 0.00 0.00 0.00 4.96
294 295 0.255890 TAGCTTTCAGTCATGCCCCC 59.744 55.000 0.00 0.00 0.00 5.40
295 296 1.673168 CTAGCTTTCAGTCATGCCCC 58.327 55.000 0.00 0.00 0.00 5.80
296 297 1.065126 ACCTAGCTTTCAGTCATGCCC 60.065 52.381 0.00 0.00 0.00 5.36
297 298 2.284190 GACCTAGCTTTCAGTCATGCC 58.716 52.381 0.00 0.00 0.00 4.40
298 299 1.929836 CGACCTAGCTTTCAGTCATGC 59.070 52.381 0.00 0.00 0.00 4.06
299 300 1.929836 GCGACCTAGCTTTCAGTCATG 59.070 52.381 0.00 0.00 0.00 3.07
300 301 1.134670 GGCGACCTAGCTTTCAGTCAT 60.135 52.381 0.00 0.00 37.29 3.06
301 302 0.246635 GGCGACCTAGCTTTCAGTCA 59.753 55.000 0.00 0.00 37.29 3.41
302 303 3.052181 GGCGACCTAGCTTTCAGTC 57.948 57.895 0.00 0.00 37.29 3.51
320 321 2.043953 GCTAGTTTGGCCCCTGGG 60.044 66.667 5.50 5.50 38.57 4.45
321 322 2.438434 CGCTAGTTTGGCCCCTGG 60.438 66.667 0.00 0.00 0.00 4.45
322 323 3.134127 GCGCTAGTTTGGCCCCTG 61.134 66.667 0.00 0.00 0.00 4.45
323 324 4.426313 GGCGCTAGTTTGGCCCCT 62.426 66.667 7.64 0.00 41.01 4.79
327 328 3.035576 GAACCGGCGCTAGTTTGGC 62.036 63.158 7.64 0.00 0.00 4.52
328 329 1.669760 TGAACCGGCGCTAGTTTGG 60.670 57.895 7.64 2.50 0.00 3.28
329 330 1.495951 GTGAACCGGCGCTAGTTTG 59.504 57.895 7.64 0.00 0.00 2.93
330 331 1.670083 GGTGAACCGGCGCTAGTTT 60.670 57.895 7.64 0.00 0.00 2.66
331 332 2.047560 GGTGAACCGGCGCTAGTT 60.048 61.111 7.64 11.60 0.00 2.24
332 333 4.078516 GGGTGAACCGGCGCTAGT 62.079 66.667 7.64 1.37 36.71 2.57
333 334 4.832608 GGGGTGAACCGGCGCTAG 62.833 72.222 7.64 0.59 41.60 3.42
337 338 3.697747 TACAGGGGTGAACCGGCG 61.698 66.667 0.00 0.00 41.60 6.46
338 339 2.046604 GTACAGGGGTGAACCGGC 60.047 66.667 0.00 0.00 41.60 6.13
339 340 2.666812 GGTACAGGGGTGAACCGG 59.333 66.667 0.00 0.00 41.60 5.28
341 342 1.259840 TAGCGGTACAGGGGTGAACC 61.260 60.000 0.00 0.00 39.11 3.62
342 343 0.828677 ATAGCGGTACAGGGGTGAAC 59.171 55.000 0.00 0.00 0.00 3.18
343 344 1.575419 AATAGCGGTACAGGGGTGAA 58.425 50.000 0.00 0.00 0.00 3.18
344 345 1.575419 AAATAGCGGTACAGGGGTGA 58.425 50.000 0.00 0.00 0.00 4.02
345 346 2.413310 AAAATAGCGGTACAGGGGTG 57.587 50.000 0.00 0.00 0.00 4.61
362 363 2.036572 CCCCCAGGGCGCTAAAAA 59.963 61.111 7.64 0.00 35.35 1.94
376 377 3.963687 ATTTCGTCCGTTCGGCCCC 62.964 63.158 6.35 0.00 0.00 5.80
377 378 2.435410 ATTTCGTCCGTTCGGCCC 60.435 61.111 6.35 0.00 0.00 5.80
378 379 1.293267 TTCATTTCGTCCGTTCGGCC 61.293 55.000 6.35 0.00 0.00 6.13
379 380 0.179233 GTTCATTTCGTCCGTTCGGC 60.179 55.000 6.35 1.44 0.00 5.54
380 381 0.092351 CGTTCATTTCGTCCGTTCGG 59.908 55.000 4.74 4.74 0.00 4.30
381 382 0.092351 CCGTTCATTTCGTCCGTTCG 59.908 55.000 0.00 0.00 0.00 3.95
382 383 0.179233 GCCGTTCATTTCGTCCGTTC 60.179 55.000 0.00 0.00 0.00 3.95
383 384 1.864176 GCCGTTCATTTCGTCCGTT 59.136 52.632 0.00 0.00 0.00 4.44
384 385 2.377310 CGCCGTTCATTTCGTCCGT 61.377 57.895 0.00 0.00 0.00 4.69
385 386 2.394136 CGCCGTTCATTTCGTCCG 59.606 61.111 0.00 0.00 0.00 4.79
386 387 2.782615 CCGCCGTTCATTTCGTCC 59.217 61.111 0.00 0.00 0.00 4.79
387 388 2.097728 GCCGCCGTTCATTTCGTC 59.902 61.111 0.00 0.00 0.00 4.20
388 389 3.784412 CGCCGCCGTTCATTTCGT 61.784 61.111 0.00 0.00 0.00 3.85
389 390 4.514569 CCGCCGCCGTTCATTTCG 62.515 66.667 0.00 0.00 0.00 3.46
390 391 4.829518 GCCGCCGCCGTTCATTTC 62.830 66.667 0.00 0.00 0.00 2.17
408 409 2.679996 AACTTCATTGGGGCCGCC 60.680 61.111 18.45 10.45 0.00 6.13
409 410 2.573340 CAACTTCATTGGGGCCGC 59.427 61.111 14.01 14.01 34.34 6.53
410 411 1.535204 AAGCAACTTCATTGGGGCCG 61.535 55.000 0.00 0.00 38.88 6.13
411 412 0.686789 AAAGCAACTTCATTGGGGCC 59.313 50.000 0.00 0.00 38.88 5.80
412 413 3.676291 TTAAAGCAACTTCATTGGGGC 57.324 42.857 0.00 0.00 38.88 5.80
413 414 7.555087 TCATAATTAAAGCAACTTCATTGGGG 58.445 34.615 0.00 0.00 38.88 4.96
423 424 9.409949 GCGTATCGATATCATAATTAAAGCAAC 57.590 33.333 8.66 0.00 0.00 4.17
424 425 9.366216 AGCGTATCGATATCATAATTAAAGCAA 57.634 29.630 8.66 0.00 0.00 3.91
425 426 8.926715 AGCGTATCGATATCATAATTAAAGCA 57.073 30.769 8.66 0.00 0.00 3.91
426 427 9.020813 TGAGCGTATCGATATCATAATTAAAGC 57.979 33.333 8.66 0.00 0.00 3.51
440 441 3.068165 TGTTCCAATCTGAGCGTATCGAT 59.932 43.478 2.16 2.16 0.00 3.59
447 448 5.569059 GTGTTTTTATGTTCCAATCTGAGCG 59.431 40.000 0.00 0.00 0.00 5.03
449 450 7.219484 AGGTGTTTTTATGTTCCAATCTGAG 57.781 36.000 0.00 0.00 0.00 3.35
468 469 2.086610 ATTCAAGTGGCCAAAGGTGT 57.913 45.000 7.24 0.00 0.00 4.16
469 470 2.548493 CCAATTCAAGTGGCCAAAGGTG 60.548 50.000 7.24 3.09 0.00 4.00
470 471 1.693606 CCAATTCAAGTGGCCAAAGGT 59.306 47.619 7.24 0.00 0.00 3.50
472 473 3.611530 CGTACCAATTCAAGTGGCCAAAG 60.612 47.826 7.24 0.00 40.02 2.77
475 476 1.072489 TCGTACCAATTCAAGTGGCCA 59.928 47.619 0.00 0.00 40.02 5.36
476 477 1.816074 TCGTACCAATTCAAGTGGCC 58.184 50.000 3.07 0.00 40.02 5.36
477 478 2.030457 CGATCGTACCAATTCAAGTGGC 59.970 50.000 3.07 0.00 40.02 5.01
478 479 2.607635 CCGATCGTACCAATTCAAGTGG 59.392 50.000 15.09 1.24 42.28 4.00
480 481 2.498481 TCCCGATCGTACCAATTCAAGT 59.502 45.455 15.09 0.00 0.00 3.16
481 482 3.173668 TCCCGATCGTACCAATTCAAG 57.826 47.619 15.09 0.00 0.00 3.02
482 483 3.830744 ATCCCGATCGTACCAATTCAA 57.169 42.857 15.09 0.00 0.00 2.69
483 484 4.322424 CCATATCCCGATCGTACCAATTCA 60.322 45.833 15.09 0.00 0.00 2.57
484 485 4.181578 CCATATCCCGATCGTACCAATTC 58.818 47.826 15.09 0.00 0.00 2.17
485 486 3.581332 ACCATATCCCGATCGTACCAATT 59.419 43.478 15.09 0.00 0.00 2.32
486 487 3.170717 ACCATATCCCGATCGTACCAAT 58.829 45.455 15.09 2.63 0.00 3.16
487 488 2.559668 GACCATATCCCGATCGTACCAA 59.440 50.000 15.09 0.00 0.00 3.67
488 489 2.165167 GACCATATCCCGATCGTACCA 58.835 52.381 15.09 0.00 0.00 3.25
489 490 2.163815 CTGACCATATCCCGATCGTACC 59.836 54.545 15.09 0.00 0.00 3.34
490 491 3.079578 TCTGACCATATCCCGATCGTAC 58.920 50.000 15.09 0.00 0.00 3.67
493 494 3.515630 CAATCTGACCATATCCCGATCG 58.484 50.000 8.51 8.51 0.00 3.69
506 508 2.209838 TCGCTCGATTCCAATCTGAC 57.790 50.000 0.00 0.00 33.24 3.51
546 548 9.752961 TGTAAACAAGATGCGCTATATTTACTA 57.247 29.630 21.48 12.42 33.64 1.82
556 558 2.420022 GTGGATGTAAACAAGATGCGCT 59.580 45.455 9.73 0.00 28.59 5.92
558 560 3.724716 CGTGTGGATGTAAACAAGATGCG 60.725 47.826 0.00 0.00 0.00 4.73
560 562 4.450757 TGTCGTGTGGATGTAAACAAGATG 59.549 41.667 0.00 0.00 37.19 2.90
574 576 3.345209 TATCGGCGGTGTCGTGTGG 62.345 63.158 7.21 0.00 38.89 4.17
577 579 0.590732 GTACTATCGGCGGTGTCGTG 60.591 60.000 7.21 0.00 38.89 4.35
582 584 1.805345 CTCCTAGTACTATCGGCGGTG 59.195 57.143 7.21 0.00 0.00 4.94
596 598 2.028190 CCATGCCGACGCTCCTAG 59.972 66.667 0.00 0.00 35.36 3.02
597 599 2.758327 ACCATGCCGACGCTCCTA 60.758 61.111 0.00 0.00 35.36 2.94
625 632 0.842030 TTCAGGTGGTGCTCCTCCAT 60.842 55.000 23.88 9.54 46.51 3.41
680 695 3.670377 GTCGTGGGGGCAACTTGC 61.670 66.667 5.08 5.08 44.08 4.01
681 696 3.353836 CGTCGTGGGGGCAACTTG 61.354 66.667 0.00 0.00 0.00 3.16
682 697 3.552384 TCGTCGTGGGGGCAACTT 61.552 61.111 0.00 0.00 0.00 2.66
683 698 4.309950 GTCGTCGTGGGGGCAACT 62.310 66.667 0.00 0.00 0.00 3.16
691 706 2.735857 GGAAACCCGTCGTCGTGG 60.736 66.667 0.71 4.83 34.95 4.94
703 718 2.564721 GCTGTGCTGGTGGGGAAAC 61.565 63.158 0.00 0.00 0.00 2.78
704 719 2.203480 GCTGTGCTGGTGGGGAAA 60.203 61.111 0.00 0.00 0.00 3.13
705 720 3.497115 TGCTGTGCTGGTGGGGAA 61.497 61.111 0.00 0.00 0.00 3.97
706 721 4.269523 GTGCTGTGCTGGTGGGGA 62.270 66.667 0.00 0.00 0.00 4.81
707 722 4.584518 TGTGCTGTGCTGGTGGGG 62.585 66.667 0.00 0.00 0.00 4.96
708 723 2.395988 TACTGTGCTGTGCTGGTGGG 62.396 60.000 0.00 0.00 0.00 4.61
709 724 1.071299 TACTGTGCTGTGCTGGTGG 59.929 57.895 0.00 0.00 0.00 4.61
710 725 1.230635 GGTACTGTGCTGTGCTGGTG 61.231 60.000 0.00 0.00 0.00 4.17
711 726 1.071471 GGTACTGTGCTGTGCTGGT 59.929 57.895 0.00 0.00 0.00 4.00
712 727 0.952497 CTGGTACTGTGCTGTGCTGG 60.952 60.000 0.00 0.00 0.00 4.85
713 728 0.952497 CCTGGTACTGTGCTGTGCTG 60.952 60.000 0.00 0.00 0.00 4.41
714 729 1.121407 TCCTGGTACTGTGCTGTGCT 61.121 55.000 0.00 0.00 0.00 4.40
715 730 0.671781 CTCCTGGTACTGTGCTGTGC 60.672 60.000 0.00 0.00 0.00 4.57
716 731 0.036952 CCTCCTGGTACTGTGCTGTG 60.037 60.000 0.00 0.00 0.00 3.66
717 732 1.831652 GCCTCCTGGTACTGTGCTGT 61.832 60.000 0.00 0.00 35.27 4.40
718 733 1.078848 GCCTCCTGGTACTGTGCTG 60.079 63.158 0.00 0.00 35.27 4.41
719 734 2.294078 GGCCTCCTGGTACTGTGCT 61.294 63.158 0.00 0.00 35.27 4.40
720 735 2.269241 GGCCTCCTGGTACTGTGC 59.731 66.667 0.00 0.00 35.27 4.57
721 736 2.579201 CGGCCTCCTGGTACTGTG 59.421 66.667 0.00 0.00 35.27 3.66
722 737 2.683933 CCGGCCTCCTGGTACTGT 60.684 66.667 0.00 0.00 35.27 3.55
723 738 4.162690 GCCGGCCTCCTGGTACTG 62.163 72.222 18.11 0.00 35.27 2.74
774 789 3.140225 GATCGGACGGACAGGGAGC 62.140 68.421 0.00 0.00 0.00 4.70
798 814 3.458163 GGATCTCGACACCGCCCA 61.458 66.667 0.00 0.00 35.37 5.36
1132 1152 2.811317 GAAGGAGACACCGCGCTG 60.811 66.667 5.56 0.00 44.74 5.18
1143 1163 3.264666 CGCAGGAATCTCGAAGGAG 57.735 57.895 0.00 0.00 41.89 3.69
1164 1184 4.061596 AGCAAGAAAGAAGAAGAAGACGG 58.938 43.478 0.00 0.00 0.00 4.79
1166 1186 4.610231 CGCAGCAAGAAAGAAGAAGAAGAC 60.610 45.833 0.00 0.00 0.00 3.01
1247 1270 0.512085 TACTAAAACAAACGCGCCCG 59.488 50.000 5.73 0.00 41.14 6.13
1314 1337 4.041198 GGATCCCGTGATTCAATAAGGGTA 59.959 45.833 0.00 5.60 39.78 3.69
1315 1338 3.181443 GGATCCCGTGATTCAATAAGGGT 60.181 47.826 0.00 0.00 39.78 4.34
1316 1339 3.073062 AGGATCCCGTGATTCAATAAGGG 59.927 47.826 8.55 10.02 40.16 3.95
1317 1340 4.067896 CAGGATCCCGTGATTCAATAAGG 58.932 47.826 8.55 0.00 0.00 2.69
1318 1341 3.499918 GCAGGATCCCGTGATTCAATAAG 59.500 47.826 8.55 0.00 0.00 1.73
1319 1342 3.476552 GCAGGATCCCGTGATTCAATAA 58.523 45.455 8.55 0.00 0.00 1.40
1379 1402 5.991606 TCGATTTGACCAATATAGAAGCAGG 59.008 40.000 0.00 0.00 0.00 4.85
1381 1404 5.462068 CGTCGATTTGACCAATATAGAAGCA 59.538 40.000 0.00 0.00 45.23 3.91
1382 1405 5.612709 GCGTCGATTTGACCAATATAGAAGC 60.613 44.000 0.00 0.00 45.23 3.86
1385 1408 3.978855 CGCGTCGATTTGACCAATATAGA 59.021 43.478 0.00 0.00 45.23 1.98
1388 1411 1.260561 GCGCGTCGATTTGACCAATAT 59.739 47.619 8.43 0.00 45.23 1.28
1389 1412 0.648441 GCGCGTCGATTTGACCAATA 59.352 50.000 8.43 0.00 45.23 1.90
1390 1413 1.019278 AGCGCGTCGATTTGACCAAT 61.019 50.000 8.43 0.00 45.23 3.16
1392 1415 1.666553 AAGCGCGTCGATTTGACCA 60.667 52.632 8.43 0.00 45.23 4.02
1431 1456 2.662156 GAGTCTGACGAACACCGATTTC 59.338 50.000 1.52 0.00 41.76 2.17
1487 1512 6.867662 ATTCAGGAATCACCGAAACATATC 57.132 37.500 0.00 0.00 44.74 1.63
1634 1659 6.024552 TGCACAATCTGGTTTAGGATTTTC 57.975 37.500 0.00 0.00 30.81 2.29
1799 1824 5.182001 GTGAGCCAATGAGATTTACACAAGT 59.818 40.000 0.00 0.00 0.00 3.16
1939 1965 0.034756 TGCCGTTTCTTAGAGCAGCA 59.965 50.000 0.00 0.00 0.00 4.41
2056 2082 7.775120 AGAAATTGCGGATGTTCTCAAAATAT 58.225 30.769 0.00 0.00 0.00 1.28
2062 2088 3.191162 CCAAGAAATTGCGGATGTTCTCA 59.809 43.478 3.60 0.00 30.10 3.27
2157 2183 6.581712 TCGATCCATCATCAAGATTAACACA 58.418 36.000 0.00 0.00 33.72 3.72
2191 2217 1.801771 CAACCAAATTAGCGTCGTGGA 59.198 47.619 4.48 0.00 33.39 4.02
2255 2281 6.128336 GGACTTCAGAGAATTGACACAATCAG 60.128 42.308 0.00 0.00 38.99 2.90
2262 2288 4.838423 TGGTAGGACTTCAGAGAATTGACA 59.162 41.667 0.00 0.00 0.00 3.58
2539 2565 1.200948 ACGGCGACAGAGGTTACTTAC 59.799 52.381 16.62 0.00 0.00 2.34
2558 2584 5.586243 TCAACTAAAGAAGCAGCATCCATAC 59.414 40.000 0.00 0.00 0.00 2.39
2622 2820 6.237313 ACCAAGTCGCTGAAATTAGTTAAC 57.763 37.500 0.00 0.00 0.00 2.01
2771 2969 8.446599 TTGTTGACTAAGGACCTTTTTAAGAG 57.553 34.615 13.11 4.95 0.00 2.85
2872 3073 9.461312 TGATTTGATAAAATAGTGCCAACTAGT 57.539 29.630 0.00 0.00 42.16 2.57
2899 3100 4.236527 AGTCACCTGTTCTTTTTCCAGT 57.763 40.909 0.00 0.00 0.00 4.00
2998 3199 4.396790 CGGCCTGCCTATAAAACAAAAGTA 59.603 41.667 6.60 0.00 0.00 2.24
3032 3233 3.491964 CCGAATATGGAAAGACGCAGGTA 60.492 47.826 0.00 0.00 0.00 3.08
3109 3310 6.299141 ACTAATGGCGAAGGAATCACATATT 58.701 36.000 0.00 0.00 0.00 1.28
3117 3318 2.423538 GTGCAACTAATGGCGAAGGAAT 59.576 45.455 0.00 0.00 0.00 3.01
3138 3339 7.918033 ACTGAGACGTCATCTGAATAATAACAG 59.082 37.037 19.50 8.23 38.00 3.16
3151 3352 7.234187 TGCAAAAATATACTGAGACGTCATC 57.766 36.000 19.50 12.61 30.18 2.92
3863 4066 4.191033 TGAACTGCATAAAAGGCATTGG 57.809 40.909 0.00 0.00 41.06 3.16
4081 4284 3.211045 GTGTCTTTAGGCTTGTCAACCA 58.789 45.455 0.00 0.00 0.00 3.67
4415 4621 8.362464 TCAGAAGCTAGAGTTATTTGACCTTA 57.638 34.615 0.00 0.00 0.00 2.69
4534 4746 7.805071 CGAGTTTGAGCACTGAAAGAAAATAAT 59.195 33.333 0.00 0.00 37.43 1.28
4551 4769 6.019961 GTCTATTCTCATTCTGCGAGTTTGAG 60.020 42.308 0.00 0.00 36.09 3.02
4639 4857 8.201554 TGATGCTGACTATCAAACTTCAATAC 57.798 34.615 0.00 0.00 31.98 1.89
4644 4862 5.819379 TGGATGATGCTGACTATCAAACTTC 59.181 40.000 0.00 0.00 38.01 3.01
4731 4949 4.984161 CACAAAGAGGTAAAACTTGCCATG 59.016 41.667 0.00 0.00 37.96 3.66
4740 4958 5.017490 TGTTGAACCCACAAAGAGGTAAAA 58.983 37.500 0.00 0.00 34.45 1.52
4953 5171 3.689649 ACCGCTAAAGCTTGTAAATGGAG 59.310 43.478 0.00 0.00 39.32 3.86
5293 5514 8.652810 AAATTTGGTTGAACTGAAAGATCTTG 57.347 30.769 9.17 0.00 36.60 3.02
5439 5660 3.654806 CCCTGTAAATCTCATCTGGGGAT 59.345 47.826 0.00 0.00 36.07 3.85
5695 5916 4.333649 AGATCGTTCAGTGCCATGTAATTG 59.666 41.667 0.00 0.00 0.00 2.32
5812 6033 7.224753 GGATATTTCGTGCTTGAAGTATCTTCA 59.775 37.037 21.48 7.92 42.54 3.02
5890 6111 5.888724 TCAGGAACCAACACAGTTATGAAAA 59.111 36.000 0.00 0.00 0.00 2.29
5966 6187 1.466856 GGCACATCTTTGCATCTGGA 58.533 50.000 0.00 0.00 44.94 3.86
6080 6301 1.527311 GCGAACTCAAACCTGTGAGAC 59.473 52.381 9.10 2.62 46.76 3.36
6102 6323 3.933861 AAAGGTTACTGGGGCAGATAG 57.066 47.619 0.00 0.00 35.18 2.08
6566 6788 5.450592 TCAGTGATTTTGCATGCACTTAA 57.549 34.783 22.58 15.21 39.40 1.85
7053 7275 9.573133 AGCAATAAAAATTCAATGTACACTAGC 57.427 29.630 0.00 0.00 0.00 3.42
7337 7559 2.293122 CGCTGAAACAGGTGATTTTGGA 59.707 45.455 0.00 0.00 31.21 3.53
7414 7636 3.882888 GTGGATCTTTGTGTGGTTGAAGA 59.117 43.478 0.00 0.00 33.17 2.87
7556 7778 0.900182 ACTCTCATGTCCGACTGGCA 60.900 55.000 0.00 0.00 34.14 4.92
7574 7796 6.552629 TCATCTGTTGTAACTATCGTCTCAC 58.447 40.000 0.00 0.00 0.00 3.51
7580 7802 6.436261 ACCGTATCATCTGTTGTAACTATCG 58.564 40.000 0.00 0.00 0.00 2.92
8899 9122 3.274455 CTCGGCAGCTATCGCGGAT 62.274 63.158 6.13 0.75 42.32 4.18
9076 9299 5.705609 TCTTTACTTGCTTCCATTTCCAC 57.294 39.130 0.00 0.00 0.00 4.02
9139 9370 3.988379 TTTTGCATTGCTTTCTCGACT 57.012 38.095 10.49 0.00 0.00 4.18
9183 9414 5.571784 ACATATGCCAAATCTGACACTTG 57.428 39.130 1.58 0.00 0.00 3.16
9225 9456 6.291585 CCAAACGAGCAGTTACAAAAATGTTC 60.292 38.462 0.00 0.00 43.37 3.18
9248 9479 1.684450 GAAAAAGGAAAACCGAGGCCA 59.316 47.619 5.01 0.00 0.00 5.36
9365 9628 3.418684 AAACAATACGAGCCTCCAAGT 57.581 42.857 0.00 0.00 0.00 3.16
9366 9629 3.751175 TCAAAACAATACGAGCCTCCAAG 59.249 43.478 0.00 0.00 0.00 3.61
9367 9630 3.745799 TCAAAACAATACGAGCCTCCAA 58.254 40.909 0.00 0.00 0.00 3.53
9368 9631 3.007506 TCTCAAAACAATACGAGCCTCCA 59.992 43.478 0.00 0.00 0.00 3.86
9369 9632 3.596214 TCTCAAAACAATACGAGCCTCC 58.404 45.455 0.00 0.00 0.00 4.30
9371 9634 4.246458 GTCTCTCAAAACAATACGAGCCT 58.754 43.478 0.00 0.00 0.00 4.58
9385 9648 1.133181 TGTGCCCCATGGTCTCTCAA 61.133 55.000 11.73 0.00 0.00 3.02
9439 9706 3.692257 ACTGAAAGAGGACCAGTCATG 57.308 47.619 0.00 0.00 36.51 3.07
9445 9712 6.248569 AGAAACTAAACTGAAAGAGGACCA 57.751 37.500 0.00 0.00 37.43 4.02
9469 9736 6.538945 AAACTAAAAGAGTCCCTGCAAAAA 57.461 33.333 0.00 0.00 37.44 1.94
9470 9737 6.831868 ACTAAACTAAAAGAGTCCCTGCAAAA 59.168 34.615 0.00 0.00 37.44 2.44
9471 9738 6.362248 ACTAAACTAAAAGAGTCCCTGCAAA 58.638 36.000 0.00 0.00 37.44 3.68
9472 9739 5.937111 ACTAAACTAAAAGAGTCCCTGCAA 58.063 37.500 0.00 0.00 37.44 4.08
9473 9740 5.562298 ACTAAACTAAAAGAGTCCCTGCA 57.438 39.130 0.00 0.00 37.44 4.41
9474 9741 6.879276 AAACTAAACTAAAAGAGTCCCTGC 57.121 37.500 0.00 0.00 37.44 4.85
9483 9750 9.807386 CGACAGGTGATTAAACTAAACTAAAAG 57.193 33.333 0.00 0.00 0.00 2.27
9484 9751 8.776470 CCGACAGGTGATTAAACTAAACTAAAA 58.224 33.333 0.00 0.00 0.00 1.52
9485 9752 7.388500 CCCGACAGGTGATTAAACTAAACTAAA 59.612 37.037 0.00 0.00 35.12 1.85
9486 9753 6.875195 CCCGACAGGTGATTAAACTAAACTAA 59.125 38.462 0.00 0.00 35.12 2.24
9487 9754 6.211184 TCCCGACAGGTGATTAAACTAAACTA 59.789 38.462 0.00 0.00 36.75 2.24
9488 9755 5.012354 TCCCGACAGGTGATTAAACTAAACT 59.988 40.000 0.00 0.00 36.75 2.66
9489 9756 5.240121 TCCCGACAGGTGATTAAACTAAAC 58.760 41.667 0.00 0.00 36.75 2.01
9490 9757 5.486735 TCCCGACAGGTGATTAAACTAAA 57.513 39.130 0.00 0.00 36.75 1.85
9491 9758 5.424757 CATCCCGACAGGTGATTAAACTAA 58.575 41.667 0.00 0.00 36.75 2.24
9492 9759 4.682320 GCATCCCGACAGGTGATTAAACTA 60.682 45.833 0.00 0.00 36.75 2.24
9493 9760 3.873910 CATCCCGACAGGTGATTAAACT 58.126 45.455 0.00 0.00 36.75 2.66
9494 9761 2.354821 GCATCCCGACAGGTGATTAAAC 59.645 50.000 0.00 0.00 36.75 2.01
9495 9762 2.026729 TGCATCCCGACAGGTGATTAAA 60.027 45.455 0.00 0.00 36.75 1.52
9496 9763 1.557371 TGCATCCCGACAGGTGATTAA 59.443 47.619 0.00 0.00 36.75 1.40
9497 9764 1.199615 TGCATCCCGACAGGTGATTA 58.800 50.000 0.00 0.00 36.75 1.75
9498 9765 0.327924 TTGCATCCCGACAGGTGATT 59.672 50.000 0.00 0.00 36.75 2.57
9499 9766 0.548031 ATTGCATCCCGACAGGTGAT 59.452 50.000 0.00 0.00 36.75 3.06
9500 9767 0.327924 AATTGCATCCCGACAGGTGA 59.672 50.000 0.00 0.00 36.75 4.02
9501 9768 1.135315 CAAATTGCATCCCGACAGGTG 60.135 52.381 0.00 0.00 36.75 4.00
9502 9769 1.176527 CAAATTGCATCCCGACAGGT 58.823 50.000 0.00 0.00 36.75 4.00
9503 9770 0.457035 CCAAATTGCATCCCGACAGG 59.543 55.000 0.00 0.00 37.24 4.00
9504 9771 1.176527 ACCAAATTGCATCCCGACAG 58.823 50.000 0.00 0.00 0.00 3.51
9505 9772 1.626686 AACCAAATTGCATCCCGACA 58.373 45.000 0.00 0.00 0.00 4.35
9569 9987 1.173913 GTGCCCACTGGGTTTGTATC 58.826 55.000 16.03 0.00 46.51 2.24
9610 10028 5.491323 TGATGTTGGTTGTGTGTATCCTA 57.509 39.130 0.00 0.00 0.00 2.94
9611 10029 4.365514 TGATGTTGGTTGTGTGTATCCT 57.634 40.909 0.00 0.00 0.00 3.24
9660 10078 3.445450 AGCTCGCTTCAGATTCTGACTTA 59.555 43.478 15.90 1.29 40.46 2.24
9677 10095 2.748605 ACTGAAAGAGTCAACAGCTCG 58.251 47.619 9.89 0.00 37.99 5.03
9705 10123 2.108075 TGACATGCCTCTTTTTCCCTCA 59.892 45.455 0.00 0.00 0.00 3.86
9726 10144 4.404715 CCTTCATTGCTCCCAATTCAATCT 59.595 41.667 0.00 0.00 39.60 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.