Multiple sequence alignment - TraesCS3A01G169400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G169400 chr3A 100.000 2705 0 0 1 2705 177670775 177673479 0.000000e+00 4996.0
1 TraesCS3A01G169400 chr3A 96.320 1114 35 3 721 1828 177888055 177889168 0.000000e+00 1825.0
2 TraesCS3A01G169400 chr3A 83.385 1288 118 40 590 1833 159831883 159833118 0.000000e+00 1105.0
3 TraesCS3A01G169400 chr3A 83.471 1089 123 21 648 1706 181104832 181105893 0.000000e+00 961.0
4 TraesCS3A01G169400 chr3A 94.507 619 27 5 2087 2705 177105990 177106601 0.000000e+00 948.0
5 TraesCS3A01G169400 chr3A 89.259 270 27 2 1 270 599781593 599781326 1.200000e-88 337.0
6 TraesCS3A01G169400 chr3A 90.400 125 10 2 1972 2094 177105075 177105199 2.150000e-36 163.0
7 TraesCS3A01G169400 chr3A 90.909 99 4 3 1851 1944 737369172 737369270 7.860000e-26 128.0
8 TraesCS3A01G169400 chr3A 90.426 94 5 2 1855 1944 703187872 703187965 1.320000e-23 121.0
9 TraesCS3A01G169400 chr3A 93.333 45 2 1 1935 1978 177889214 177889258 6.250000e-07 65.8
10 TraesCS3A01G169400 chr3D 94.465 1337 51 8 543 1856 152852199 152850863 0.000000e+00 2037.0
11 TraesCS3A01G169400 chr3D 93.777 916 47 5 543 1451 152702590 152701678 0.000000e+00 1367.0
12 TraesCS3A01G169400 chr3D 81.427 1486 176 51 396 1822 149770266 149768822 0.000000e+00 1123.0
13 TraesCS3A01G169400 chr3D 97.577 619 11 2 2087 2705 152849900 152849286 0.000000e+00 1057.0
14 TraesCS3A01G169400 chr3D 90.801 587 42 7 2120 2705 153083119 153082544 0.000000e+00 774.0
15 TraesCS3A01G169400 chr3D 91.284 436 24 6 1407 1828 152701797 152701362 1.400000e-162 582.0
16 TraesCS3A01G169400 chr3D 96.154 156 6 0 1939 2094 152850861 152850706 3.460000e-64 255.0
17 TraesCS3A01G169400 chr3D 90.260 154 7 6 393 541 152852379 152852229 7.640000e-46 195.0
18 TraesCS3A01G169400 chr3D 90.411 146 8 5 1972 2115 153084044 153083903 1.280000e-43 187.0
19 TraesCS3A01G169400 chr3D 92.135 89 3 2 1851 1935 147277474 147277386 3.660000e-24 122.0
20 TraesCS3A01G169400 chr3D 97.500 40 1 0 1939 1978 152701308 152701269 4.830000e-08 69.4
21 TraesCS3A01G169400 chr3B 93.363 1326 62 4 543 1856 224164563 224163252 0.000000e+00 1938.0
22 TraesCS3A01G169400 chr3B 93.380 1299 59 7 543 1828 224287047 224285763 0.000000e+00 1897.0
23 TraesCS3A01G169400 chr3B 92.129 1334 80 13 543 1856 223678079 223676751 0.000000e+00 1858.0
24 TraesCS3A01G169400 chr3B 82.140 1299 147 37 582 1835 203345614 203346872 0.000000e+00 1035.0
25 TraesCS3A01G169400 chr3B 95.511 646 24 4 543 1185 223558883 223558240 0.000000e+00 1027.0
26 TraesCS3A01G169400 chr3B 95.153 619 23 4 2087 2705 224318528 224317917 0.000000e+00 970.0
27 TraesCS3A01G169400 chr3B 90.339 590 46 7 2120 2705 224284778 224284196 0.000000e+00 763.0
28 TraesCS3A01G169400 chr3B 90.290 587 49 6 2120 2705 223675805 223675226 0.000000e+00 761.0
29 TraesCS3A01G169400 chr3B 88.087 596 48 11 2120 2705 224162321 224161739 0.000000e+00 686.0
30 TraesCS3A01G169400 chr3B 90.487 431 26 4 1407 1828 223558128 223557704 3.040000e-154 555.0
31 TraesCS3A01G169400 chr3B 88.158 228 24 3 155 381 812788610 812788385 4.440000e-68 268.0
32 TraesCS3A01G169400 chr3B 96.154 156 6 0 1939 2094 224163250 224163095 3.460000e-64 255.0
33 TraesCS3A01G169400 chr3B 95.513 156 7 0 1939 2094 223676749 223676594 1.610000e-62 250.0
34 TraesCS3A01G169400 chr3B 94.872 156 8 0 1939 2094 224285710 224285555 7.480000e-61 244.0
35 TraesCS3A01G169400 chr3B 78.497 386 74 9 1 382 418827137 418826757 7.480000e-61 244.0
36 TraesCS3A01G169400 chr3B 84.768 151 17 4 1407 1554 224163784 224163637 2.170000e-31 147.0
37 TraesCS3A01G169400 chr3B 92.500 40 3 0 1939 1978 223557650 223557611 1.050000e-04 58.4
38 TraesCS3A01G169400 chr2B 89.683 378 32 4 1 378 546825179 546824809 2.440000e-130 475.0
39 TraesCS3A01G169400 chr5D 87.696 382 46 1 1 382 37831885 37832265 6.870000e-121 444.0
40 TraesCS3A01G169400 chr5D 86.379 301 31 6 90 382 482344951 482344653 1.210000e-83 320.0
41 TraesCS3A01G169400 chr5D 86.792 106 8 4 1850 1949 540267743 540267638 2.200000e-21 113.0
42 TraesCS3A01G169400 chr4A 86.911 382 47 3 1 381 574930064 574929685 2.490000e-115 425.0
43 TraesCS3A01G169400 chr4A 89.615 260 26 1 1 260 73168753 73169011 2.010000e-86 329.0
44 TraesCS3A01G169400 chr6A 86.614 381 31 9 1 381 499787832 499788192 1.170000e-108 403.0
45 TraesCS3A01G169400 chr6B 84.595 383 55 4 1 382 471153586 471153965 7.070000e-101 377.0
46 TraesCS3A01G169400 chr6B 84.615 117 10 4 1852 1963 179236343 179236230 2.850000e-20 110.0
47 TraesCS3A01G169400 chr1D 90.426 94 5 2 1855 1944 42391803 42391710 1.320000e-23 121.0
48 TraesCS3A01G169400 chr1D 89.000 100 6 3 1840 1935 250421762 250421664 4.730000e-23 119.0
49 TraesCS3A01G169400 chr2A 91.011 89 4 2 1851 1935 145199966 145199878 1.700000e-22 117.0
50 TraesCS3A01G169400 chr1B 88.776 98 8 2 1852 1947 662552694 662552790 1.700000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G169400 chr3A 177670775 177673479 2704 False 4996.000000 4996 100.000000 1 2705 1 chr3A.!!$F2 2704
1 TraesCS3A01G169400 chr3A 159831883 159833118 1235 False 1105.000000 1105 83.385000 590 1833 1 chr3A.!!$F1 1243
2 TraesCS3A01G169400 chr3A 181104832 181105893 1061 False 961.000000 961 83.471000 648 1706 1 chr3A.!!$F3 1058
3 TraesCS3A01G169400 chr3A 177888055 177889258 1203 False 945.400000 1825 94.826500 721 1978 2 chr3A.!!$F7 1257
4 TraesCS3A01G169400 chr3A 177105075 177106601 1526 False 555.500000 948 92.453500 1972 2705 2 chr3A.!!$F6 733
5 TraesCS3A01G169400 chr3D 149768822 149770266 1444 True 1123.000000 1123 81.427000 396 1822 1 chr3D.!!$R2 1426
6 TraesCS3A01G169400 chr3D 152849286 152852379 3093 True 886.000000 2037 94.614000 393 2705 4 chr3D.!!$R4 2312
7 TraesCS3A01G169400 chr3D 152701269 152702590 1321 True 672.800000 1367 94.187000 543 1978 3 chr3D.!!$R3 1435
8 TraesCS3A01G169400 chr3D 153082544 153084044 1500 True 480.500000 774 90.606000 1972 2705 2 chr3D.!!$R5 733
9 TraesCS3A01G169400 chr3B 203345614 203346872 1258 False 1035.000000 1035 82.140000 582 1835 1 chr3B.!!$F1 1253
10 TraesCS3A01G169400 chr3B 224317917 224318528 611 True 970.000000 970 95.153000 2087 2705 1 chr3B.!!$R1 618
11 TraesCS3A01G169400 chr3B 224284196 224287047 2851 True 968.000000 1897 92.863667 543 2705 3 chr3B.!!$R7 2162
12 TraesCS3A01G169400 chr3B 223675226 223678079 2853 True 956.333333 1858 92.644000 543 2705 3 chr3B.!!$R5 2162
13 TraesCS3A01G169400 chr3B 224161739 224164563 2824 True 756.500000 1938 90.593000 543 2705 4 chr3B.!!$R6 2162
14 TraesCS3A01G169400 chr3B 223557611 223558883 1272 True 546.800000 1027 92.832667 543 1978 3 chr3B.!!$R4 1435

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
121 122 0.033504 TCAACCTCTGGAACACTCGC 59.966 55.0 0.0 0.0 0.0 5.03 F
372 373 0.035458 AAGCTCTCAGTGTTTCCCGG 59.965 55.0 0.0 0.0 0.0 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1696 1955 0.603065 GGGTGGTTCATTCAGTTGGC 59.397 55.0 0.0 0.0 0.00 4.52 R
2007 2320 0.968901 TGGGTGCGATTACGAGGAGT 60.969 55.0 0.0 0.0 42.66 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.626686 ATCCTCTCATAGTGGAGGCG 58.373 55.000 4.31 0.00 46.22 5.52
20 21 0.551396 TCCTCTCATAGTGGAGGCGA 59.449 55.000 4.31 0.00 46.22 5.54
21 22 1.145945 TCCTCTCATAGTGGAGGCGAT 59.854 52.381 4.31 0.00 46.22 4.58
22 23 1.271934 CCTCTCATAGTGGAGGCGATG 59.728 57.143 0.00 0.00 41.92 3.84
23 24 1.271934 CTCTCATAGTGGAGGCGATGG 59.728 57.143 0.00 0.00 35.58 3.51
24 25 1.133482 TCTCATAGTGGAGGCGATGGA 60.133 52.381 0.00 0.00 35.58 3.41
25 26 1.688735 CTCATAGTGGAGGCGATGGAA 59.311 52.381 0.00 0.00 0.00 3.53
26 27 1.688735 TCATAGTGGAGGCGATGGAAG 59.311 52.381 0.00 0.00 0.00 3.46
27 28 1.414181 CATAGTGGAGGCGATGGAAGT 59.586 52.381 0.00 0.00 0.00 3.01
28 29 0.824109 TAGTGGAGGCGATGGAAGTG 59.176 55.000 0.00 0.00 0.00 3.16
29 30 2.109126 GTGGAGGCGATGGAAGTGC 61.109 63.158 0.00 0.00 0.00 4.40
30 31 2.892425 GGAGGCGATGGAAGTGCG 60.892 66.667 0.00 0.00 0.00 5.34
31 32 2.184322 GAGGCGATGGAAGTGCGA 59.816 61.111 0.00 0.00 0.00 5.10
32 33 1.880340 GAGGCGATGGAAGTGCGAG 60.880 63.158 0.00 0.00 0.00 5.03
33 34 2.184322 GGCGATGGAAGTGCGAGA 59.816 61.111 0.00 0.00 0.00 4.04
34 35 1.447838 GGCGATGGAAGTGCGAGAA 60.448 57.895 0.00 0.00 0.00 2.87
35 36 0.811616 GGCGATGGAAGTGCGAGAAT 60.812 55.000 0.00 0.00 0.00 2.40
36 37 0.302890 GCGATGGAAGTGCGAGAATG 59.697 55.000 0.00 0.00 0.00 2.67
37 38 1.645034 CGATGGAAGTGCGAGAATGT 58.355 50.000 0.00 0.00 0.00 2.71
38 39 1.325640 CGATGGAAGTGCGAGAATGTG 59.674 52.381 0.00 0.00 0.00 3.21
39 40 2.350522 GATGGAAGTGCGAGAATGTGT 58.649 47.619 0.00 0.00 0.00 3.72
40 41 2.254546 TGGAAGTGCGAGAATGTGTT 57.745 45.000 0.00 0.00 0.00 3.32
41 42 3.394674 TGGAAGTGCGAGAATGTGTTA 57.605 42.857 0.00 0.00 0.00 2.41
42 43 3.937814 TGGAAGTGCGAGAATGTGTTAT 58.062 40.909 0.00 0.00 0.00 1.89
43 44 3.932710 TGGAAGTGCGAGAATGTGTTATC 59.067 43.478 0.00 0.00 0.00 1.75
44 45 4.184629 GGAAGTGCGAGAATGTGTTATCT 58.815 43.478 0.00 0.00 0.00 1.98
45 46 4.631813 GGAAGTGCGAGAATGTGTTATCTT 59.368 41.667 0.00 0.00 0.00 2.40
46 47 5.220491 GGAAGTGCGAGAATGTGTTATCTTC 60.220 44.000 0.00 0.00 0.00 2.87
47 48 3.859961 AGTGCGAGAATGTGTTATCTTCG 59.140 43.478 0.00 0.00 0.00 3.79
48 49 2.603110 TGCGAGAATGTGTTATCTTCGC 59.397 45.455 8.80 8.80 39.92 4.70
49 50 2.033662 GCGAGAATGTGTTATCTTCGCC 60.034 50.000 4.78 0.00 36.81 5.54
50 51 3.186909 CGAGAATGTGTTATCTTCGCCA 58.813 45.455 0.00 0.00 0.00 5.69
51 52 3.616821 CGAGAATGTGTTATCTTCGCCAA 59.383 43.478 0.00 0.00 0.00 4.52
52 53 4.492570 CGAGAATGTGTTATCTTCGCCAAC 60.493 45.833 0.00 0.00 0.00 3.77
53 54 4.579869 AGAATGTGTTATCTTCGCCAACT 58.420 39.130 0.00 0.00 0.00 3.16
54 55 5.003804 AGAATGTGTTATCTTCGCCAACTT 58.996 37.500 0.00 0.00 0.00 2.66
55 56 4.685169 ATGTGTTATCTTCGCCAACTTG 57.315 40.909 0.00 0.00 0.00 3.16
56 57 3.734463 TGTGTTATCTTCGCCAACTTGA 58.266 40.909 0.00 0.00 0.00 3.02
57 58 3.745975 TGTGTTATCTTCGCCAACTTGAG 59.254 43.478 0.00 0.00 0.00 3.02
58 59 3.125316 GTGTTATCTTCGCCAACTTGAGG 59.875 47.826 0.00 0.00 0.00 3.86
59 60 2.678336 GTTATCTTCGCCAACTTGAGGG 59.322 50.000 0.00 0.00 0.00 4.30
60 61 0.693049 ATCTTCGCCAACTTGAGGGT 59.307 50.000 0.00 0.00 0.00 4.34
61 62 0.472471 TCTTCGCCAACTTGAGGGTT 59.528 50.000 0.00 0.00 0.00 4.11
62 63 1.133915 TCTTCGCCAACTTGAGGGTTT 60.134 47.619 0.00 0.00 0.00 3.27
63 64 1.681264 CTTCGCCAACTTGAGGGTTTT 59.319 47.619 0.00 0.00 0.00 2.43
64 65 1.770294 TCGCCAACTTGAGGGTTTTT 58.230 45.000 0.00 0.00 0.00 1.94
83 84 5.568685 TTTTTCAAACATCGTGTTGGAGA 57.431 34.783 7.64 2.66 40.99 3.71
84 85 4.545823 TTTCAAACATCGTGTTGGAGAC 57.454 40.909 7.64 0.00 40.99 3.36
85 86 2.131972 TCAAACATCGTGTTGGAGACG 58.868 47.619 4.51 0.00 40.14 4.18
86 87 1.194547 CAAACATCGTGTTGGAGACGG 59.805 52.381 4.51 0.00 40.14 4.79
87 88 0.677288 AACATCGTGTTGGAGACGGA 59.323 50.000 3.13 0.00 39.45 4.69
88 89 0.038526 ACATCGTGTTGGAGACGGAC 60.039 55.000 0.00 0.00 37.43 4.79
89 90 0.243907 CATCGTGTTGGAGACGGACT 59.756 55.000 0.00 0.00 37.43 3.85
90 91 0.243907 ATCGTGTTGGAGACGGACTG 59.756 55.000 0.00 0.00 37.43 3.51
91 92 1.105167 TCGTGTTGGAGACGGACTGT 61.105 55.000 0.00 0.00 37.43 3.55
99 100 4.098847 GACGGACTGTCTGGAGGT 57.901 61.111 20.03 0.00 44.58 3.85
100 101 3.261250 GACGGACTGTCTGGAGGTA 57.739 57.895 20.03 0.00 44.58 3.08
101 102 1.096416 GACGGACTGTCTGGAGGTAG 58.904 60.000 20.03 0.03 44.58 3.18
102 103 0.404812 ACGGACTGTCTGGAGGTAGT 59.595 55.000 20.03 0.00 0.00 2.73
103 104 1.096416 CGGACTGTCTGGAGGTAGTC 58.904 60.000 8.80 0.00 38.98 2.59
104 105 1.613520 CGGACTGTCTGGAGGTAGTCA 60.614 57.143 8.80 0.00 40.91 3.41
105 106 2.526432 GGACTGTCTGGAGGTAGTCAA 58.474 52.381 7.85 0.00 40.91 3.18
106 107 2.231721 GGACTGTCTGGAGGTAGTCAAC 59.768 54.545 7.85 0.00 40.91 3.18
117 118 3.041508 GGTAGTCAACCTCTGGAACAC 57.958 52.381 0.00 0.00 45.75 3.32
118 119 2.633481 GGTAGTCAACCTCTGGAACACT 59.367 50.000 0.00 0.00 45.75 3.55
119 120 3.306156 GGTAGTCAACCTCTGGAACACTC 60.306 52.174 0.00 0.00 45.75 3.51
120 121 1.341531 AGTCAACCTCTGGAACACTCG 59.658 52.381 0.00 0.00 0.00 4.18
121 122 0.033504 TCAACCTCTGGAACACTCGC 59.966 55.000 0.00 0.00 0.00 5.03
122 123 0.951040 CAACCTCTGGAACACTCGCC 60.951 60.000 0.00 0.00 0.00 5.54
123 124 1.407656 AACCTCTGGAACACTCGCCA 61.408 55.000 0.00 0.00 0.00 5.69
124 125 1.374758 CCTCTGGAACACTCGCCAC 60.375 63.158 0.00 0.00 0.00 5.01
125 126 1.734477 CTCTGGAACACTCGCCACG 60.734 63.158 0.00 0.00 0.00 4.94
126 127 2.142357 CTCTGGAACACTCGCCACGA 62.142 60.000 0.00 0.00 0.00 4.35
127 128 1.079819 CTGGAACACTCGCCACGAT 60.080 57.895 0.00 0.00 34.61 3.73
128 129 0.670546 CTGGAACACTCGCCACGATT 60.671 55.000 0.00 0.00 34.61 3.34
129 130 0.669318 TGGAACACTCGCCACGATTC 60.669 55.000 0.00 0.00 34.61 2.52
130 131 0.389948 GGAACACTCGCCACGATTCT 60.390 55.000 0.00 0.00 34.61 2.40
131 132 1.429463 GAACACTCGCCACGATTCTT 58.571 50.000 0.00 0.00 34.61 2.52
132 133 1.126846 GAACACTCGCCACGATTCTTG 59.873 52.381 0.00 0.00 34.61 3.02
133 134 0.317160 ACACTCGCCACGATTCTTGA 59.683 50.000 0.00 0.00 34.61 3.02
134 135 1.066858 ACACTCGCCACGATTCTTGAT 60.067 47.619 0.00 0.00 34.61 2.57
135 136 1.590238 CACTCGCCACGATTCTTGATC 59.410 52.381 0.00 0.00 34.61 2.92
144 145 0.931005 GATTCTTGATCGGTCGTGGC 59.069 55.000 0.00 0.00 0.00 5.01
145 146 0.537188 ATTCTTGATCGGTCGTGGCT 59.463 50.000 0.00 0.00 0.00 4.75
146 147 0.108804 TTCTTGATCGGTCGTGGCTC 60.109 55.000 0.00 0.00 0.00 4.70
147 148 1.519455 CTTGATCGGTCGTGGCTCC 60.519 63.158 0.00 0.00 0.00 4.70
148 149 1.949847 CTTGATCGGTCGTGGCTCCT 61.950 60.000 0.00 0.00 0.00 3.69
149 150 0.681887 TTGATCGGTCGTGGCTCCTA 60.682 55.000 0.00 0.00 0.00 2.94
150 151 0.467474 TGATCGGTCGTGGCTCCTAT 60.467 55.000 0.00 0.00 0.00 2.57
151 152 0.241481 GATCGGTCGTGGCTCCTATC 59.759 60.000 0.00 0.00 0.00 2.08
152 153 0.178987 ATCGGTCGTGGCTCCTATCT 60.179 55.000 0.00 0.00 0.00 1.98
153 154 0.395311 TCGGTCGTGGCTCCTATCTT 60.395 55.000 0.00 0.00 0.00 2.40
154 155 1.134007 TCGGTCGTGGCTCCTATCTTA 60.134 52.381 0.00 0.00 0.00 2.10
155 156 1.267261 CGGTCGTGGCTCCTATCTTAG 59.733 57.143 0.00 0.00 0.00 2.18
156 157 2.308690 GGTCGTGGCTCCTATCTTAGT 58.691 52.381 0.00 0.00 0.00 2.24
157 158 3.484407 GGTCGTGGCTCCTATCTTAGTA 58.516 50.000 0.00 0.00 0.00 1.82
158 159 3.502979 GGTCGTGGCTCCTATCTTAGTAG 59.497 52.174 0.00 0.00 0.00 2.57
159 160 4.387598 GTCGTGGCTCCTATCTTAGTAGA 58.612 47.826 0.00 0.00 34.21 2.59
160 161 4.820716 GTCGTGGCTCCTATCTTAGTAGAA 59.179 45.833 0.00 0.00 33.20 2.10
161 162 5.298777 GTCGTGGCTCCTATCTTAGTAGAAA 59.701 44.000 0.00 0.00 33.20 2.52
162 163 6.016108 GTCGTGGCTCCTATCTTAGTAGAAAT 60.016 42.308 0.00 0.00 33.20 2.17
163 164 6.550108 TCGTGGCTCCTATCTTAGTAGAAATT 59.450 38.462 0.00 0.00 33.20 1.82
164 165 6.642950 CGTGGCTCCTATCTTAGTAGAAATTG 59.357 42.308 0.00 0.00 33.20 2.32
165 166 6.931840 GTGGCTCCTATCTTAGTAGAAATTGG 59.068 42.308 0.00 0.00 33.20 3.16
166 167 6.844388 TGGCTCCTATCTTAGTAGAAATTGGA 59.156 38.462 0.00 0.00 33.20 3.53
167 168 7.015682 TGGCTCCTATCTTAGTAGAAATTGGAG 59.984 40.741 0.00 0.00 38.30 3.86
168 169 7.233757 GGCTCCTATCTTAGTAGAAATTGGAGA 59.766 40.741 13.45 0.00 37.94 3.71
169 170 8.303876 GCTCCTATCTTAGTAGAAATTGGAGAG 58.696 40.741 13.45 0.00 37.94 3.20
170 171 8.184304 TCCTATCTTAGTAGAAATTGGAGAGC 57.816 38.462 0.00 0.00 33.20 4.09
171 172 8.007742 TCCTATCTTAGTAGAAATTGGAGAGCT 58.992 37.037 0.00 0.00 33.20 4.09
172 173 8.646900 CCTATCTTAGTAGAAATTGGAGAGCTT 58.353 37.037 0.00 0.00 33.20 3.74
173 174 9.474920 CTATCTTAGTAGAAATTGGAGAGCTTG 57.525 37.037 0.00 0.00 33.20 4.01
174 175 7.482169 TCTTAGTAGAAATTGGAGAGCTTGA 57.518 36.000 0.00 0.00 0.00 3.02
175 176 8.083828 TCTTAGTAGAAATTGGAGAGCTTGAT 57.916 34.615 0.00 0.00 0.00 2.57
176 177 7.984050 TCTTAGTAGAAATTGGAGAGCTTGATG 59.016 37.037 0.00 0.00 0.00 3.07
177 178 5.435291 AGTAGAAATTGGAGAGCTTGATGG 58.565 41.667 0.00 0.00 0.00 3.51
178 179 4.313020 AGAAATTGGAGAGCTTGATGGT 57.687 40.909 0.00 0.00 0.00 3.55
179 180 5.441718 AGAAATTGGAGAGCTTGATGGTA 57.558 39.130 0.00 0.00 0.00 3.25
180 181 5.435291 AGAAATTGGAGAGCTTGATGGTAG 58.565 41.667 0.00 0.00 0.00 3.18
181 182 4.851639 AATTGGAGAGCTTGATGGTAGT 57.148 40.909 0.00 0.00 0.00 2.73
182 183 4.851639 ATTGGAGAGCTTGATGGTAGTT 57.148 40.909 0.00 0.00 0.00 2.24
183 184 4.640771 TTGGAGAGCTTGATGGTAGTTT 57.359 40.909 0.00 0.00 0.00 2.66
184 185 5.755409 TTGGAGAGCTTGATGGTAGTTTA 57.245 39.130 0.00 0.00 0.00 2.01
185 186 5.755409 TGGAGAGCTTGATGGTAGTTTAA 57.245 39.130 0.00 0.00 0.00 1.52
186 187 6.121776 TGGAGAGCTTGATGGTAGTTTAAA 57.878 37.500 0.00 0.00 0.00 1.52
187 188 6.721318 TGGAGAGCTTGATGGTAGTTTAAAT 58.279 36.000 0.00 0.00 0.00 1.40
188 189 7.175104 TGGAGAGCTTGATGGTAGTTTAAATT 58.825 34.615 0.00 0.00 0.00 1.82
189 190 7.336931 TGGAGAGCTTGATGGTAGTTTAAATTC 59.663 37.037 0.00 0.00 0.00 2.17
190 191 7.554476 GGAGAGCTTGATGGTAGTTTAAATTCT 59.446 37.037 0.00 0.00 0.00 2.40
191 192 8.870075 AGAGCTTGATGGTAGTTTAAATTCTT 57.130 30.769 0.00 0.00 0.00 2.52
192 193 9.301897 AGAGCTTGATGGTAGTTTAAATTCTTT 57.698 29.630 0.00 0.00 0.00 2.52
193 194 9.914131 GAGCTTGATGGTAGTTTAAATTCTTTT 57.086 29.630 0.00 0.00 0.00 2.27
219 220 6.426980 TGTTCATCATGTTGTAAGATCAGC 57.573 37.500 3.76 0.00 0.00 4.26
220 221 5.355071 TGTTCATCATGTTGTAAGATCAGCC 59.645 40.000 3.76 0.00 0.00 4.85
221 222 5.101648 TCATCATGTTGTAAGATCAGCCA 57.898 39.130 3.76 0.00 0.00 4.75
222 223 5.499313 TCATCATGTTGTAAGATCAGCCAA 58.501 37.500 3.76 0.00 0.00 4.52
223 224 5.355071 TCATCATGTTGTAAGATCAGCCAAC 59.645 40.000 12.03 12.03 38.10 3.77
224 225 3.684305 TCATGTTGTAAGATCAGCCAACG 59.316 43.478 13.32 0.00 39.95 4.10
225 226 2.422597 TGTTGTAAGATCAGCCAACGG 58.577 47.619 13.32 0.00 39.95 4.44
226 227 2.224426 TGTTGTAAGATCAGCCAACGGT 60.224 45.455 13.32 0.00 39.95 4.83
227 228 2.380084 TGTAAGATCAGCCAACGGTC 57.620 50.000 0.00 0.00 0.00 4.79
228 229 1.066430 TGTAAGATCAGCCAACGGTCC 60.066 52.381 0.00 0.00 0.00 4.46
229 230 0.539986 TAAGATCAGCCAACGGTCCC 59.460 55.000 0.00 0.00 0.00 4.46
230 231 2.124695 GATCAGCCAACGGTCCCC 60.125 66.667 0.00 0.00 0.00 4.81
240 241 3.778955 CGGTCCCCGCTCATATCT 58.221 61.111 0.00 0.00 41.17 1.98
241 242 2.957060 CGGTCCCCGCTCATATCTA 58.043 57.895 0.00 0.00 41.17 1.98
242 243 1.475403 CGGTCCCCGCTCATATCTAT 58.525 55.000 0.00 0.00 41.17 1.98
243 244 1.135139 CGGTCCCCGCTCATATCTATG 59.865 57.143 0.00 0.00 41.17 2.23
244 245 1.134670 GGTCCCCGCTCATATCTATGC 60.135 57.143 0.00 0.00 33.76 3.14
245 246 1.827969 GTCCCCGCTCATATCTATGCT 59.172 52.381 0.00 0.00 33.76 3.79
246 247 3.024547 GTCCCCGCTCATATCTATGCTA 58.975 50.000 0.00 0.00 33.76 3.49
247 248 3.447586 GTCCCCGCTCATATCTATGCTAA 59.552 47.826 0.00 0.00 33.76 3.09
248 249 3.701542 TCCCCGCTCATATCTATGCTAAG 59.298 47.826 0.00 0.00 33.76 2.18
249 250 3.452474 CCCGCTCATATCTATGCTAAGC 58.548 50.000 0.00 0.00 33.76 3.09
250 251 3.118992 CCCGCTCATATCTATGCTAAGCA 60.119 47.826 0.00 0.00 44.86 3.91
287 288 9.977762 ATTAACGTAATCGAAAACTGGATTAAC 57.022 29.630 0.00 0.00 37.00 2.01
288 289 7.424227 AACGTAATCGAAAACTGGATTAACA 57.576 32.000 0.00 0.00 37.00 2.41
289 290 7.424227 ACGTAATCGAAAACTGGATTAACAA 57.576 32.000 0.00 0.00 37.00 2.83
290 291 8.036273 ACGTAATCGAAAACTGGATTAACAAT 57.964 30.769 0.00 0.00 37.00 2.71
291 292 7.960738 ACGTAATCGAAAACTGGATTAACAATG 59.039 33.333 0.00 0.00 37.00 2.82
292 293 7.960738 CGTAATCGAAAACTGGATTAACAATGT 59.039 33.333 0.00 0.00 37.00 2.71
293 294 9.620660 GTAATCGAAAACTGGATTAACAATGTT 57.379 29.630 3.43 3.43 37.00 2.71
294 295 8.742554 AATCGAAAACTGGATTAACAATGTTC 57.257 30.769 0.22 0.00 31.41 3.18
295 296 7.504924 TCGAAAACTGGATTAACAATGTTCT 57.495 32.000 0.22 0.00 0.00 3.01
296 297 7.936584 TCGAAAACTGGATTAACAATGTTCTT 58.063 30.769 0.22 0.00 0.00 2.52
297 298 9.058174 TCGAAAACTGGATTAACAATGTTCTTA 57.942 29.630 0.22 0.00 0.00 2.10
298 299 9.329913 CGAAAACTGGATTAACAATGTTCTTAG 57.670 33.333 0.22 0.00 0.00 2.18
299 300 9.129209 GAAAACTGGATTAACAATGTTCTTAGC 57.871 33.333 0.22 0.00 0.00 3.09
300 301 8.409358 AAACTGGATTAACAATGTTCTTAGCT 57.591 30.769 0.22 0.00 0.00 3.32
301 302 8.409358 AACTGGATTAACAATGTTCTTAGCTT 57.591 30.769 0.22 0.00 0.00 3.74
302 303 8.045176 ACTGGATTAACAATGTTCTTAGCTTC 57.955 34.615 0.22 0.00 0.00 3.86
303 304 7.121315 ACTGGATTAACAATGTTCTTAGCTTCC 59.879 37.037 0.22 1.13 0.00 3.46
304 305 7.175104 TGGATTAACAATGTTCTTAGCTTCCT 58.825 34.615 0.22 0.00 0.00 3.36
305 306 7.121168 TGGATTAACAATGTTCTTAGCTTCCTG 59.879 37.037 0.22 0.00 0.00 3.86
306 307 7.336931 GGATTAACAATGTTCTTAGCTTCCTGA 59.663 37.037 0.22 0.00 0.00 3.86
307 308 5.948992 AACAATGTTCTTAGCTTCCTGAC 57.051 39.130 0.00 0.00 0.00 3.51
308 309 4.327680 ACAATGTTCTTAGCTTCCTGACC 58.672 43.478 0.00 0.00 0.00 4.02
309 310 4.202461 ACAATGTTCTTAGCTTCCTGACCA 60.202 41.667 0.00 0.00 0.00 4.02
310 311 3.685139 TGTTCTTAGCTTCCTGACCAG 57.315 47.619 0.00 0.00 0.00 4.00
311 312 2.972713 TGTTCTTAGCTTCCTGACCAGT 59.027 45.455 0.00 0.00 0.00 4.00
312 313 4.157246 TGTTCTTAGCTTCCTGACCAGTA 58.843 43.478 0.00 0.00 0.00 2.74
313 314 4.220821 TGTTCTTAGCTTCCTGACCAGTAG 59.779 45.833 0.00 0.00 0.00 2.57
314 315 2.761208 TCTTAGCTTCCTGACCAGTAGC 59.239 50.000 0.00 11.20 35.63 3.58
315 316 1.486211 TAGCTTCCTGACCAGTAGCC 58.514 55.000 13.97 2.46 35.85 3.93
316 317 0.252467 AGCTTCCTGACCAGTAGCCT 60.252 55.000 13.97 4.06 35.85 4.58
317 318 0.107945 GCTTCCTGACCAGTAGCCTG 60.108 60.000 9.06 0.00 38.50 4.85
318 319 1.270907 CTTCCTGACCAGTAGCCTGT 58.729 55.000 0.00 0.00 36.95 4.00
319 320 1.625818 CTTCCTGACCAGTAGCCTGTT 59.374 52.381 0.00 0.00 36.95 3.16
320 321 2.615986 TCCTGACCAGTAGCCTGTTA 57.384 50.000 0.00 0.00 36.95 2.41
321 322 2.457598 TCCTGACCAGTAGCCTGTTAG 58.542 52.381 0.00 0.00 36.95 2.34
322 323 1.134670 CCTGACCAGTAGCCTGTTAGC 60.135 57.143 0.00 0.00 36.95 3.09
323 324 0.530744 TGACCAGTAGCCTGTTAGCG 59.469 55.000 0.00 0.00 36.95 4.26
324 325 0.179108 GACCAGTAGCCTGTTAGCGG 60.179 60.000 0.00 0.00 36.95 5.52
325 326 0.613853 ACCAGTAGCCTGTTAGCGGA 60.614 55.000 0.00 0.00 36.95 5.54
326 327 0.753262 CCAGTAGCCTGTTAGCGGAT 59.247 55.000 0.00 0.00 36.95 4.18
327 328 1.139058 CCAGTAGCCTGTTAGCGGATT 59.861 52.381 0.00 0.00 36.95 3.01
328 329 2.205074 CAGTAGCCTGTTAGCGGATTG 58.795 52.381 0.00 0.00 38.01 2.67
329 330 0.938008 GTAGCCTGTTAGCGGATTGC 59.062 55.000 0.00 0.00 46.98 3.56
330 331 5.849626 CAGTAGCCTGTTAGCGGATTGCT 62.850 52.174 0.00 0.00 44.69 3.91
338 339 4.223964 GCGGATTGCTCGGCGAAC 62.224 66.667 12.13 7.32 41.73 3.95
339 340 3.913573 CGGATTGCTCGGCGAACG 61.914 66.667 12.13 0.48 46.11 3.95
340 341 4.223964 GGATTGCTCGGCGAACGC 62.224 66.667 12.13 12.92 43.86 4.84
341 342 3.188786 GATTGCTCGGCGAACGCT 61.189 61.111 19.72 3.64 43.86 5.07
342 343 2.740714 GATTGCTCGGCGAACGCTT 61.741 57.895 19.72 9.18 43.86 4.68
343 344 2.240612 GATTGCTCGGCGAACGCTTT 62.241 55.000 19.72 8.87 43.86 3.51
344 345 1.852067 ATTGCTCGGCGAACGCTTTT 61.852 50.000 19.72 4.46 43.86 2.27
345 346 1.222766 TTGCTCGGCGAACGCTTTTA 61.223 50.000 19.72 0.00 43.86 1.52
346 347 1.017177 TGCTCGGCGAACGCTTTTAT 61.017 50.000 19.72 0.00 43.86 1.40
347 348 0.096454 GCTCGGCGAACGCTTTTATT 59.904 50.000 12.13 0.00 43.86 1.40
348 349 1.850905 GCTCGGCGAACGCTTTTATTC 60.851 52.381 12.13 0.00 43.86 1.75
349 350 1.392168 CTCGGCGAACGCTTTTATTCA 59.608 47.619 12.13 0.00 43.86 2.57
350 351 1.799403 TCGGCGAACGCTTTTATTCAA 59.201 42.857 18.14 0.00 43.86 2.69
351 352 2.417239 TCGGCGAACGCTTTTATTCAAT 59.583 40.909 18.14 0.00 43.86 2.57
352 353 3.617706 TCGGCGAACGCTTTTATTCAATA 59.382 39.130 18.14 0.00 43.86 1.90
353 354 4.093115 TCGGCGAACGCTTTTATTCAATAA 59.907 37.500 18.14 0.00 43.86 1.40
354 355 4.789119 CGGCGAACGCTTTTATTCAATAAA 59.211 37.500 18.14 0.00 41.60 1.40
355 356 5.053286 CGGCGAACGCTTTTATTCAATAAAG 60.053 40.000 18.14 0.23 41.60 1.85
356 357 5.275741 GGCGAACGCTTTTATTCAATAAAGC 60.276 40.000 18.14 8.98 41.60 3.51
357 358 5.511729 GCGAACGCTTTTATTCAATAAAGCT 59.488 36.000 11.97 0.79 36.23 3.74
358 359 6.290592 GCGAACGCTTTTATTCAATAAAGCTC 60.291 38.462 11.97 7.88 36.23 4.09
359 360 6.961554 CGAACGCTTTTATTCAATAAAGCTCT 59.038 34.615 15.08 4.62 36.23 4.09
360 361 7.162708 CGAACGCTTTTATTCAATAAAGCTCTC 59.837 37.037 15.08 10.79 36.23 3.20
361 362 7.377766 ACGCTTTTATTCAATAAAGCTCTCA 57.622 32.000 15.08 0.00 36.23 3.27
362 363 7.467623 ACGCTTTTATTCAATAAAGCTCTCAG 58.532 34.615 15.08 7.33 36.23 3.35
363 364 7.119846 ACGCTTTTATTCAATAAAGCTCTCAGT 59.880 33.333 15.08 5.12 36.23 3.41
364 365 7.427606 CGCTTTTATTCAATAAAGCTCTCAGTG 59.572 37.037 15.08 8.46 36.23 3.66
365 366 8.239998 GCTTTTATTCAATAAAGCTCTCAGTGT 58.760 33.333 11.20 0.00 36.23 3.55
369 370 6.560253 TTCAATAAAGCTCTCAGTGTTTCC 57.440 37.500 0.00 0.00 0.00 3.13
370 371 5.003804 TCAATAAAGCTCTCAGTGTTTCCC 58.996 41.667 0.00 0.00 0.00 3.97
371 372 1.884235 AAAGCTCTCAGTGTTTCCCG 58.116 50.000 0.00 0.00 0.00 5.14
372 373 0.035458 AAGCTCTCAGTGTTTCCCGG 59.965 55.000 0.00 0.00 0.00 5.73
373 374 2.035442 GCTCTCAGTGTTTCCCGGC 61.035 63.158 0.00 0.00 0.00 6.13
374 375 1.371183 CTCTCAGTGTTTCCCGGCA 59.629 57.895 0.00 0.00 0.00 5.69
375 376 0.250295 CTCTCAGTGTTTCCCGGCAA 60.250 55.000 0.00 0.00 0.00 4.52
376 377 0.181587 TCTCAGTGTTTCCCGGCAAA 59.818 50.000 0.00 0.00 0.00 3.68
377 378 1.028905 CTCAGTGTTTCCCGGCAAAA 58.971 50.000 0.00 0.00 0.00 2.44
378 379 1.407258 CTCAGTGTTTCCCGGCAAAAA 59.593 47.619 0.00 0.00 0.00 1.94
450 451 0.392461 GTTCCCGCTAATCACAGCCA 60.392 55.000 0.00 0.00 38.37 4.75
452 453 0.546122 TCCCGCTAATCACAGCCATT 59.454 50.000 0.00 0.00 38.37 3.16
453 454 1.765904 TCCCGCTAATCACAGCCATTA 59.234 47.619 0.00 0.00 38.37 1.90
454 455 2.146342 CCCGCTAATCACAGCCATTAG 58.854 52.381 0.00 0.00 38.37 1.73
497 499 7.318141 CACAGCCTTTGATTTGTTGATTAGAT 58.682 34.615 0.00 0.00 0.00 1.98
521 527 2.032680 AATAGCGCCAACCACGTAAT 57.967 45.000 2.29 0.00 0.00 1.89
522 528 1.295792 ATAGCGCCAACCACGTAATG 58.704 50.000 2.29 0.00 0.00 1.90
671 749 4.163649 CCCTAGTTTCCGATCCCTAGTTTT 59.836 45.833 0.00 0.00 0.00 2.43
1086 1190 0.106268 ATTGGGATTGCCGCACCATA 60.106 50.000 2.25 0.00 37.45 2.74
1266 1370 4.612412 TGTGGGTTGGACGACGCC 62.612 66.667 0.00 0.00 0.00 5.68
1394 1510 4.347453 CACAAGCCCTTGCGGTGC 62.347 66.667 7.88 0.00 44.03 5.01
1538 1793 1.888215 CCGCAGCCTCACATGATAAT 58.112 50.000 0.00 0.00 0.00 1.28
1696 1955 0.393077 CTGCCCCTACTTCGTATGGG 59.607 60.000 9.28 9.28 43.69 4.00
1857 2169 8.732746 ATGTAATTGGTGTCTGAATTAGTACC 57.267 34.615 0.00 0.00 36.18 3.34
1858 2170 7.107542 TGTAATTGGTGTCTGAATTAGTACCC 58.892 38.462 0.00 0.00 35.37 3.69
1859 2171 4.563140 TTGGTGTCTGAATTAGTACCCC 57.437 45.455 0.00 0.00 35.37 4.95
1860 2172 2.841881 TGGTGTCTGAATTAGTACCCCC 59.158 50.000 0.00 0.00 35.37 5.40
1861 2173 3.113043 GGTGTCTGAATTAGTACCCCCT 58.887 50.000 0.00 0.00 32.35 4.79
1862 2174 3.134262 GGTGTCTGAATTAGTACCCCCTC 59.866 52.174 0.00 0.00 32.35 4.30
1863 2175 4.031611 GTGTCTGAATTAGTACCCCCTCT 58.968 47.826 0.00 0.00 0.00 3.69
1864 2176 4.030913 TGTCTGAATTAGTACCCCCTCTG 58.969 47.826 0.00 0.00 0.00 3.35
1865 2177 4.031611 GTCTGAATTAGTACCCCCTCTGT 58.968 47.826 0.00 0.00 0.00 3.41
1866 2178 5.206587 GTCTGAATTAGTACCCCCTCTGTA 58.793 45.833 0.00 0.00 0.00 2.74
1867 2179 5.659971 GTCTGAATTAGTACCCCCTCTGTAA 59.340 44.000 0.00 0.00 0.00 2.41
1868 2180 6.155737 GTCTGAATTAGTACCCCCTCTGTAAA 59.844 42.308 0.00 0.00 0.00 2.01
1869 2181 6.155737 TCTGAATTAGTACCCCCTCTGTAAAC 59.844 42.308 0.00 0.00 0.00 2.01
1870 2182 5.786457 TGAATTAGTACCCCCTCTGTAAACA 59.214 40.000 0.00 0.00 0.00 2.83
1871 2183 6.272792 TGAATTAGTACCCCCTCTGTAAACAA 59.727 38.462 0.00 0.00 0.00 2.83
1872 2184 6.707273 ATTAGTACCCCCTCTGTAAACAAA 57.293 37.500 0.00 0.00 0.00 2.83
1873 2185 6.707273 TTAGTACCCCCTCTGTAAACAAAT 57.293 37.500 0.00 0.00 0.00 2.32
1874 2186 7.811482 TTAGTACCCCCTCTGTAAACAAATA 57.189 36.000 0.00 0.00 0.00 1.40
1875 2187 6.903340 AGTACCCCCTCTGTAAACAAATAT 57.097 37.500 0.00 0.00 0.00 1.28
1876 2188 9.504705 TTAGTACCCCCTCTGTAAACAAATATA 57.495 33.333 0.00 0.00 0.00 0.86
1877 2189 8.396619 AGTACCCCCTCTGTAAACAAATATAA 57.603 34.615 0.00 0.00 0.00 0.98
1878 2190 8.491958 AGTACCCCCTCTGTAAACAAATATAAG 58.508 37.037 0.00 0.00 0.00 1.73
1879 2191 7.280044 ACCCCCTCTGTAAACAAATATAAGT 57.720 36.000 0.00 0.00 0.00 2.24
1880 2192 7.116736 ACCCCCTCTGTAAACAAATATAAGTG 58.883 38.462 0.00 0.00 0.00 3.16
1881 2193 7.116736 CCCCCTCTGTAAACAAATATAAGTGT 58.883 38.462 0.00 0.00 0.00 3.55
1882 2194 7.614192 CCCCCTCTGTAAACAAATATAAGTGTT 59.386 37.037 0.00 0.00 39.63 3.32
1883 2195 9.020731 CCCCTCTGTAAACAAATATAAGTGTTT 57.979 33.333 16.76 16.76 46.73 2.83
1930 2242 8.888579 ACACTCTTATATTTCTTTACGGATGG 57.111 34.615 0.00 0.00 0.00 3.51
1931 2243 8.701895 ACACTCTTATATTTCTTTACGGATGGA 58.298 33.333 0.00 0.00 0.00 3.41
1932 2244 9.197694 CACTCTTATATTTCTTTACGGATGGAG 57.802 37.037 0.00 0.00 0.00 3.86
1933 2245 8.925338 ACTCTTATATTTCTTTACGGATGGAGT 58.075 33.333 0.00 0.00 0.00 3.85
2007 2320 1.533033 TCTCTCCGGCACCTTGACA 60.533 57.895 0.00 0.00 0.00 3.58
2039 2352 1.315257 GCACCCATTTCTCCGCACAT 61.315 55.000 0.00 0.00 0.00 3.21
2222 3480 8.514594 CATGACAACACAAGTTTATTACTGGAT 58.485 33.333 0.00 0.00 37.12 3.41
2266 3527 8.099537 AGATACATAATTATTCCACCAGAGCTG 58.900 37.037 0.00 0.00 0.00 4.24
2333 3604 9.961265 CGTGAATAGAACCTATCACTAACAATA 57.039 33.333 0.00 0.00 39.94 1.90
2447 3722 4.942761 ATGCAAAAAGGAACACATCACT 57.057 36.364 0.00 0.00 0.00 3.41
2520 3795 3.166489 GCATTCAGCGGTTCTAGTACT 57.834 47.619 0.00 0.00 0.00 2.73
2523 3798 5.290386 GCATTCAGCGGTTCTAGTACTTAT 58.710 41.667 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.332195 TCCATCGCCTCCACTATGAG 58.668 55.000 0.00 0.00 0.00 2.90
6 7 1.688735 CTTCCATCGCCTCCACTATGA 59.311 52.381 0.00 0.00 0.00 2.15
7 8 1.414181 ACTTCCATCGCCTCCACTATG 59.586 52.381 0.00 0.00 0.00 2.23
8 9 1.414181 CACTTCCATCGCCTCCACTAT 59.586 52.381 0.00 0.00 0.00 2.12
9 10 0.824109 CACTTCCATCGCCTCCACTA 59.176 55.000 0.00 0.00 0.00 2.74
10 11 1.599047 CACTTCCATCGCCTCCACT 59.401 57.895 0.00 0.00 0.00 4.00
11 12 2.109126 GCACTTCCATCGCCTCCAC 61.109 63.158 0.00 0.00 0.00 4.02
12 13 2.268920 GCACTTCCATCGCCTCCA 59.731 61.111 0.00 0.00 0.00 3.86
13 14 2.892425 CGCACTTCCATCGCCTCC 60.892 66.667 0.00 0.00 0.00 4.30
14 15 1.880340 CTCGCACTTCCATCGCCTC 60.880 63.158 0.00 0.00 0.00 4.70
15 16 1.888436 TTCTCGCACTTCCATCGCCT 61.888 55.000 0.00 0.00 0.00 5.52
16 17 0.811616 ATTCTCGCACTTCCATCGCC 60.812 55.000 0.00 0.00 0.00 5.54
17 18 0.302890 CATTCTCGCACTTCCATCGC 59.697 55.000 0.00 0.00 0.00 4.58
18 19 1.325640 CACATTCTCGCACTTCCATCG 59.674 52.381 0.00 0.00 0.00 3.84
19 20 2.350522 ACACATTCTCGCACTTCCATC 58.649 47.619 0.00 0.00 0.00 3.51
20 21 2.479566 ACACATTCTCGCACTTCCAT 57.520 45.000 0.00 0.00 0.00 3.41
21 22 2.254546 AACACATTCTCGCACTTCCA 57.745 45.000 0.00 0.00 0.00 3.53
22 23 4.184629 AGATAACACATTCTCGCACTTCC 58.815 43.478 0.00 0.00 0.00 3.46
23 24 5.499334 CGAAGATAACACATTCTCGCACTTC 60.499 44.000 0.00 0.00 0.00 3.01
24 25 4.327357 CGAAGATAACACATTCTCGCACTT 59.673 41.667 0.00 0.00 0.00 3.16
25 26 3.859961 CGAAGATAACACATTCTCGCACT 59.140 43.478 0.00 0.00 0.00 4.40
26 27 3.542291 GCGAAGATAACACATTCTCGCAC 60.542 47.826 8.52 0.00 37.88 5.34
27 28 2.603110 GCGAAGATAACACATTCTCGCA 59.397 45.455 8.52 0.00 37.88 5.10
28 29 2.033662 GGCGAAGATAACACATTCTCGC 60.034 50.000 5.06 5.06 37.57 5.03
29 30 3.186909 TGGCGAAGATAACACATTCTCG 58.813 45.455 0.00 0.00 0.00 4.04
30 31 4.631813 AGTTGGCGAAGATAACACATTCTC 59.368 41.667 0.00 0.00 0.00 2.87
31 32 4.579869 AGTTGGCGAAGATAACACATTCT 58.420 39.130 0.00 0.00 0.00 2.40
32 33 4.946784 AGTTGGCGAAGATAACACATTC 57.053 40.909 0.00 0.00 0.00 2.67
33 34 4.759693 TCAAGTTGGCGAAGATAACACATT 59.240 37.500 2.34 0.00 0.00 2.71
34 35 4.323417 TCAAGTTGGCGAAGATAACACAT 58.677 39.130 2.34 0.00 0.00 3.21
35 36 3.734463 TCAAGTTGGCGAAGATAACACA 58.266 40.909 2.34 0.00 0.00 3.72
36 37 3.125316 CCTCAAGTTGGCGAAGATAACAC 59.875 47.826 2.34 0.00 0.00 3.32
37 38 3.334691 CCTCAAGTTGGCGAAGATAACA 58.665 45.455 2.34 0.00 0.00 2.41
38 39 2.678336 CCCTCAAGTTGGCGAAGATAAC 59.322 50.000 2.34 0.00 0.00 1.89
39 40 2.304761 ACCCTCAAGTTGGCGAAGATAA 59.695 45.455 2.34 0.00 0.00 1.75
40 41 1.906574 ACCCTCAAGTTGGCGAAGATA 59.093 47.619 2.34 0.00 0.00 1.98
41 42 0.693049 ACCCTCAAGTTGGCGAAGAT 59.307 50.000 2.34 0.00 0.00 2.40
42 43 0.472471 AACCCTCAAGTTGGCGAAGA 59.528 50.000 2.34 0.00 0.00 2.87
43 44 1.318576 AAACCCTCAAGTTGGCGAAG 58.681 50.000 2.34 0.00 0.00 3.79
44 45 1.770294 AAAACCCTCAAGTTGGCGAA 58.230 45.000 2.34 0.00 0.00 4.70
45 46 1.770294 AAAAACCCTCAAGTTGGCGA 58.230 45.000 2.34 0.00 0.00 5.54
61 62 5.336744 GTCTCCAACACGATGTTTGAAAAA 58.663 37.500 0.00 0.00 38.77 1.94
62 63 4.495019 CGTCTCCAACACGATGTTTGAAAA 60.495 41.667 0.00 0.00 38.77 2.29
63 64 3.001838 CGTCTCCAACACGATGTTTGAAA 59.998 43.478 0.00 0.00 38.77 2.69
64 65 2.542178 CGTCTCCAACACGATGTTTGAA 59.458 45.455 0.00 0.00 38.77 2.69
65 66 2.131972 CGTCTCCAACACGATGTTTGA 58.868 47.619 0.00 0.00 38.77 2.69
66 67 1.194547 CCGTCTCCAACACGATGTTTG 59.805 52.381 0.00 0.00 38.77 2.93
67 68 1.069513 TCCGTCTCCAACACGATGTTT 59.930 47.619 0.00 0.00 38.77 2.83
68 69 0.677288 TCCGTCTCCAACACGATGTT 59.323 50.000 0.00 0.00 42.08 2.71
69 70 0.038526 GTCCGTCTCCAACACGATGT 60.039 55.000 0.00 0.00 39.75 3.06
70 71 0.243907 AGTCCGTCTCCAACACGATG 59.756 55.000 0.00 0.00 39.75 3.84
71 72 0.243907 CAGTCCGTCTCCAACACGAT 59.756 55.000 0.00 0.00 39.75 3.73
72 73 1.105167 ACAGTCCGTCTCCAACACGA 61.105 55.000 0.00 0.00 39.75 4.35
73 74 0.663568 GACAGTCCGTCTCCAACACG 60.664 60.000 0.00 0.00 41.81 4.49
74 75 3.196613 GACAGTCCGTCTCCAACAC 57.803 57.895 0.00 0.00 41.81 3.32
82 83 1.096416 CTACCTCCAGACAGTCCGTC 58.904 60.000 0.00 0.00 45.77 4.79
83 84 0.404812 ACTACCTCCAGACAGTCCGT 59.595 55.000 0.00 0.00 0.00 4.69
84 85 1.096416 GACTACCTCCAGACAGTCCG 58.904 60.000 0.00 0.00 32.93 4.79
85 86 2.217510 TGACTACCTCCAGACAGTCC 57.782 55.000 0.00 0.00 37.25 3.85
86 87 2.231721 GGTTGACTACCTCCAGACAGTC 59.768 54.545 0.00 0.00 44.10 3.51
87 88 2.249139 GGTTGACTACCTCCAGACAGT 58.751 52.381 0.00 0.00 44.10 3.55
98 99 3.612004 CGAGTGTTCCAGAGGTTGACTAC 60.612 52.174 0.00 0.00 0.00 2.73
99 100 2.557056 CGAGTGTTCCAGAGGTTGACTA 59.443 50.000 0.00 0.00 0.00 2.59
100 101 1.341531 CGAGTGTTCCAGAGGTTGACT 59.658 52.381 0.00 0.00 0.00 3.41
101 102 1.784525 CGAGTGTTCCAGAGGTTGAC 58.215 55.000 0.00 0.00 0.00 3.18
102 103 0.033504 GCGAGTGTTCCAGAGGTTGA 59.966 55.000 0.00 0.00 0.00 3.18
103 104 0.951040 GGCGAGTGTTCCAGAGGTTG 60.951 60.000 0.00 0.00 0.00 3.77
104 105 1.371558 GGCGAGTGTTCCAGAGGTT 59.628 57.895 0.00 0.00 0.00 3.50
105 106 1.837051 TGGCGAGTGTTCCAGAGGT 60.837 57.895 0.00 0.00 0.00 3.85
106 107 1.374758 GTGGCGAGTGTTCCAGAGG 60.375 63.158 0.00 0.00 32.15 3.69
107 108 1.734477 CGTGGCGAGTGTTCCAGAG 60.734 63.158 0.00 0.00 32.15 3.35
108 109 1.532604 ATCGTGGCGAGTGTTCCAGA 61.533 55.000 0.00 0.00 39.91 3.86
109 110 0.670546 AATCGTGGCGAGTGTTCCAG 60.671 55.000 0.00 0.00 39.91 3.86
110 111 0.669318 GAATCGTGGCGAGTGTTCCA 60.669 55.000 0.00 0.00 39.91 3.53
111 112 0.389948 AGAATCGTGGCGAGTGTTCC 60.390 55.000 0.00 0.00 39.91 3.62
112 113 1.126846 CAAGAATCGTGGCGAGTGTTC 59.873 52.381 0.00 0.00 35.49 3.18
113 114 1.148310 CAAGAATCGTGGCGAGTGTT 58.852 50.000 0.00 0.00 37.88 3.32
114 115 0.317160 TCAAGAATCGTGGCGAGTGT 59.683 50.000 0.00 0.00 39.91 3.55
115 116 1.590238 GATCAAGAATCGTGGCGAGTG 59.410 52.381 0.00 0.00 39.91 3.51
116 117 1.927895 GATCAAGAATCGTGGCGAGT 58.072 50.000 0.00 0.00 39.91 4.18
125 126 0.931005 GCCACGACCGATCAAGAATC 59.069 55.000 0.00 0.00 0.00 2.52
126 127 0.537188 AGCCACGACCGATCAAGAAT 59.463 50.000 0.00 0.00 0.00 2.40
127 128 0.108804 GAGCCACGACCGATCAAGAA 60.109 55.000 0.00 0.00 0.00 2.52
128 129 1.511305 GAGCCACGACCGATCAAGA 59.489 57.895 0.00 0.00 0.00 3.02
129 130 1.519455 GGAGCCACGACCGATCAAG 60.519 63.158 0.00 0.00 0.00 3.02
130 131 0.681887 TAGGAGCCACGACCGATCAA 60.682 55.000 0.00 0.00 0.00 2.57
131 132 0.467474 ATAGGAGCCACGACCGATCA 60.467 55.000 0.00 0.00 0.00 2.92
132 133 0.241481 GATAGGAGCCACGACCGATC 59.759 60.000 0.00 0.00 32.96 3.69
133 134 0.178987 AGATAGGAGCCACGACCGAT 60.179 55.000 0.00 0.00 0.00 4.18
134 135 0.395311 AAGATAGGAGCCACGACCGA 60.395 55.000 0.00 0.00 0.00 4.69
135 136 1.267261 CTAAGATAGGAGCCACGACCG 59.733 57.143 0.00 0.00 0.00 4.79
136 137 2.308690 ACTAAGATAGGAGCCACGACC 58.691 52.381 0.00 0.00 0.00 4.79
137 138 4.387598 TCTACTAAGATAGGAGCCACGAC 58.612 47.826 0.00 0.00 36.65 4.34
138 139 4.701651 TCTACTAAGATAGGAGCCACGA 57.298 45.455 0.00 0.00 36.65 4.35
139 140 5.769484 TTTCTACTAAGATAGGAGCCACG 57.231 43.478 0.00 0.00 36.65 4.94
140 141 6.931840 CCAATTTCTACTAAGATAGGAGCCAC 59.068 42.308 0.00 0.00 36.65 5.01
141 142 6.844388 TCCAATTTCTACTAAGATAGGAGCCA 59.156 38.462 0.00 0.00 36.65 4.75
142 143 7.233757 TCTCCAATTTCTACTAAGATAGGAGCC 59.766 40.741 0.00 0.00 36.65 4.70
143 144 8.184304 TCTCCAATTTCTACTAAGATAGGAGC 57.816 38.462 0.00 0.00 36.65 4.70
144 145 8.303876 GCTCTCCAATTTCTACTAAGATAGGAG 58.696 40.741 0.00 0.00 38.14 3.69
145 146 8.007742 AGCTCTCCAATTTCTACTAAGATAGGA 58.992 37.037 0.00 0.00 0.00 2.94
146 147 8.189119 AGCTCTCCAATTTCTACTAAGATAGG 57.811 38.462 0.00 0.00 0.00 2.57
147 148 9.474920 CAAGCTCTCCAATTTCTACTAAGATAG 57.525 37.037 0.00 0.00 0.00 2.08
148 149 9.201989 TCAAGCTCTCCAATTTCTACTAAGATA 57.798 33.333 0.00 0.00 0.00 1.98
149 150 8.083828 TCAAGCTCTCCAATTTCTACTAAGAT 57.916 34.615 0.00 0.00 0.00 2.40
150 151 7.482169 TCAAGCTCTCCAATTTCTACTAAGA 57.518 36.000 0.00 0.00 0.00 2.10
151 152 7.226325 CCATCAAGCTCTCCAATTTCTACTAAG 59.774 40.741 0.00 0.00 0.00 2.18
152 153 7.050377 CCATCAAGCTCTCCAATTTCTACTAA 58.950 38.462 0.00 0.00 0.00 2.24
153 154 6.156949 ACCATCAAGCTCTCCAATTTCTACTA 59.843 38.462 0.00 0.00 0.00 1.82
154 155 5.045286 ACCATCAAGCTCTCCAATTTCTACT 60.045 40.000 0.00 0.00 0.00 2.57
155 156 5.189180 ACCATCAAGCTCTCCAATTTCTAC 58.811 41.667 0.00 0.00 0.00 2.59
156 157 5.441718 ACCATCAAGCTCTCCAATTTCTA 57.558 39.130 0.00 0.00 0.00 2.10
157 158 4.313020 ACCATCAAGCTCTCCAATTTCT 57.687 40.909 0.00 0.00 0.00 2.52
158 159 5.189180 ACTACCATCAAGCTCTCCAATTTC 58.811 41.667 0.00 0.00 0.00 2.17
159 160 5.184892 ACTACCATCAAGCTCTCCAATTT 57.815 39.130 0.00 0.00 0.00 1.82
160 161 4.851639 ACTACCATCAAGCTCTCCAATT 57.148 40.909 0.00 0.00 0.00 2.32
161 162 4.851639 AACTACCATCAAGCTCTCCAAT 57.148 40.909 0.00 0.00 0.00 3.16
162 163 4.640771 AAACTACCATCAAGCTCTCCAA 57.359 40.909 0.00 0.00 0.00 3.53
163 164 5.755409 TTAAACTACCATCAAGCTCTCCA 57.245 39.130 0.00 0.00 0.00 3.86
164 165 7.554476 AGAATTTAAACTACCATCAAGCTCTCC 59.446 37.037 0.00 0.00 0.00 3.71
165 166 8.499403 AGAATTTAAACTACCATCAAGCTCTC 57.501 34.615 0.00 0.00 0.00 3.20
166 167 8.870075 AAGAATTTAAACTACCATCAAGCTCT 57.130 30.769 0.00 0.00 0.00 4.09
167 168 9.914131 AAAAGAATTTAAACTACCATCAAGCTC 57.086 29.630 0.00 0.00 37.28 4.09
193 194 8.615211 GCTGATCTTACAACATGATGAACATAA 58.385 33.333 10.29 0.00 37.46 1.90
194 195 7.227314 GGCTGATCTTACAACATGATGAACATA 59.773 37.037 10.29 0.00 37.46 2.29
195 196 6.039047 GGCTGATCTTACAACATGATGAACAT 59.961 38.462 10.29 0.00 40.17 2.71
196 197 5.355071 GGCTGATCTTACAACATGATGAACA 59.645 40.000 10.29 0.00 0.00 3.18
197 198 5.355071 TGGCTGATCTTACAACATGATGAAC 59.645 40.000 10.29 0.00 0.00 3.18
198 199 5.499313 TGGCTGATCTTACAACATGATGAA 58.501 37.500 10.29 0.00 0.00 2.57
199 200 5.101648 TGGCTGATCTTACAACATGATGA 57.898 39.130 10.29 0.00 0.00 2.92
200 201 5.575957 GTTGGCTGATCTTACAACATGATG 58.424 41.667 16.58 0.00 41.95 3.07
201 202 4.333649 CGTTGGCTGATCTTACAACATGAT 59.666 41.667 19.41 0.00 42.35 2.45
202 203 3.684305 CGTTGGCTGATCTTACAACATGA 59.316 43.478 19.41 0.00 42.35 3.07
203 204 3.181507 CCGTTGGCTGATCTTACAACATG 60.182 47.826 19.41 0.00 42.35 3.21
204 205 3.009723 CCGTTGGCTGATCTTACAACAT 58.990 45.455 19.41 0.00 42.35 2.71
205 206 2.224426 ACCGTTGGCTGATCTTACAACA 60.224 45.455 19.41 0.43 42.35 3.33
206 207 2.415512 GACCGTTGGCTGATCTTACAAC 59.584 50.000 13.41 13.41 39.70 3.32
207 208 2.614481 GGACCGTTGGCTGATCTTACAA 60.614 50.000 0.00 0.00 0.00 2.41
208 209 1.066430 GGACCGTTGGCTGATCTTACA 60.066 52.381 0.00 0.00 0.00 2.41
209 210 1.653151 GGACCGTTGGCTGATCTTAC 58.347 55.000 0.00 0.00 0.00 2.34
210 211 0.539986 GGGACCGTTGGCTGATCTTA 59.460 55.000 0.00 0.00 0.00 2.10
211 212 1.299976 GGGACCGTTGGCTGATCTT 59.700 57.895 0.00 0.00 0.00 2.40
212 213 2.670148 GGGGACCGTTGGCTGATCT 61.670 63.158 0.00 0.00 40.86 2.75
213 214 2.124695 GGGGACCGTTGGCTGATC 60.125 66.667 0.00 0.00 40.86 2.92
224 225 1.134670 GCATAGATATGAGCGGGGACC 60.135 57.143 4.01 0.00 39.89 4.46
225 226 1.827969 AGCATAGATATGAGCGGGGAC 59.172 52.381 4.01 0.00 35.75 4.46
226 227 2.238084 AGCATAGATATGAGCGGGGA 57.762 50.000 4.01 0.00 35.75 4.81
227 228 3.739519 GCTTAGCATAGATATGAGCGGGG 60.740 52.174 0.00 0.00 35.75 5.73
228 229 3.118992 TGCTTAGCATAGATATGAGCGGG 60.119 47.826 1.39 0.00 35.20 6.13
229 230 4.115401 TGCTTAGCATAGATATGAGCGG 57.885 45.455 1.39 0.00 35.20 5.52
261 262 9.977762 GTTAATCCAGTTTTCGATTACGTTAAT 57.022 29.630 0.00 0.00 40.69 1.40
262 263 8.986847 TGTTAATCCAGTTTTCGATTACGTTAA 58.013 29.630 0.00 0.00 40.69 2.01
263 264 8.531622 TGTTAATCCAGTTTTCGATTACGTTA 57.468 30.769 0.00 0.00 40.69 3.18
264 265 7.424227 TGTTAATCCAGTTTTCGATTACGTT 57.576 32.000 0.00 0.00 40.69 3.99
265 266 7.424227 TTGTTAATCCAGTTTTCGATTACGT 57.576 32.000 0.00 0.00 40.69 3.57
266 267 7.960738 ACATTGTTAATCCAGTTTTCGATTACG 59.039 33.333 0.00 0.00 41.26 3.18
267 268 9.620660 AACATTGTTAATCCAGTTTTCGATTAC 57.379 29.630 0.00 0.00 32.15 1.89
268 269 9.834628 GAACATTGTTAATCCAGTTTTCGATTA 57.165 29.630 1.15 0.00 31.33 1.75
269 270 8.576442 AGAACATTGTTAATCCAGTTTTCGATT 58.424 29.630 1.15 0.00 33.39 3.34
270 271 8.110860 AGAACATTGTTAATCCAGTTTTCGAT 57.889 30.769 1.15 0.00 0.00 3.59
271 272 7.504924 AGAACATTGTTAATCCAGTTTTCGA 57.495 32.000 1.15 0.00 0.00 3.71
272 273 9.329913 CTAAGAACATTGTTAATCCAGTTTTCG 57.670 33.333 1.15 0.00 0.00 3.46
273 274 9.129209 GCTAAGAACATTGTTAATCCAGTTTTC 57.871 33.333 1.15 0.00 0.00 2.29
274 275 8.860088 AGCTAAGAACATTGTTAATCCAGTTTT 58.140 29.630 1.15 0.00 0.00 2.43
275 276 8.409358 AGCTAAGAACATTGTTAATCCAGTTT 57.591 30.769 1.15 0.00 0.00 2.66
276 277 8.409358 AAGCTAAGAACATTGTTAATCCAGTT 57.591 30.769 1.15 0.00 0.00 3.16
277 278 7.121315 GGAAGCTAAGAACATTGTTAATCCAGT 59.879 37.037 1.15 0.00 0.00 4.00
278 279 7.337942 AGGAAGCTAAGAACATTGTTAATCCAG 59.662 37.037 1.15 0.00 0.00 3.86
279 280 7.121168 CAGGAAGCTAAGAACATTGTTAATCCA 59.879 37.037 1.15 0.00 0.00 3.41
280 281 7.336931 TCAGGAAGCTAAGAACATTGTTAATCC 59.663 37.037 1.15 3.48 0.00 3.01
281 282 8.178313 GTCAGGAAGCTAAGAACATTGTTAATC 58.822 37.037 1.15 0.00 0.00 1.75
282 283 7.121315 GGTCAGGAAGCTAAGAACATTGTTAAT 59.879 37.037 1.15 0.00 0.00 1.40
283 284 6.430000 GGTCAGGAAGCTAAGAACATTGTTAA 59.570 38.462 1.15 0.00 0.00 2.01
284 285 5.938125 GGTCAGGAAGCTAAGAACATTGTTA 59.062 40.000 1.15 0.00 0.00 2.41
285 286 4.762251 GGTCAGGAAGCTAAGAACATTGTT 59.238 41.667 0.63 0.63 0.00 2.83
286 287 4.202461 TGGTCAGGAAGCTAAGAACATTGT 60.202 41.667 0.00 0.00 0.00 2.71
287 288 4.326826 TGGTCAGGAAGCTAAGAACATTG 58.673 43.478 0.00 0.00 0.00 2.82
288 289 4.042187 ACTGGTCAGGAAGCTAAGAACATT 59.958 41.667 2.87 0.00 0.00 2.71
289 290 3.584848 ACTGGTCAGGAAGCTAAGAACAT 59.415 43.478 2.87 0.00 0.00 2.71
290 291 2.972713 ACTGGTCAGGAAGCTAAGAACA 59.027 45.455 2.87 0.00 0.00 3.18
291 292 3.686916 ACTGGTCAGGAAGCTAAGAAC 57.313 47.619 2.87 0.00 0.00 3.01
292 293 3.195825 GCTACTGGTCAGGAAGCTAAGAA 59.804 47.826 15.64 0.00 38.06 2.52
293 294 2.761208 GCTACTGGTCAGGAAGCTAAGA 59.239 50.000 15.64 0.00 38.06 2.10
294 295 2.159028 GGCTACTGGTCAGGAAGCTAAG 60.159 54.545 19.59 0.00 39.78 2.18
295 296 1.831736 GGCTACTGGTCAGGAAGCTAA 59.168 52.381 19.59 0.00 39.78 3.09
296 297 1.007238 AGGCTACTGGTCAGGAAGCTA 59.993 52.381 19.59 0.00 39.78 3.32
297 298 0.252467 AGGCTACTGGTCAGGAAGCT 60.252 55.000 19.59 9.09 39.78 3.74
298 299 0.107945 CAGGCTACTGGTCAGGAAGC 60.108 60.000 14.98 14.98 41.13 3.86
299 300 1.625818 AACAGGCTACTGGTCAGGAAG 59.374 52.381 2.87 1.33 42.11 3.46
300 301 1.729586 AACAGGCTACTGGTCAGGAA 58.270 50.000 2.87 0.00 42.11 3.36
301 302 2.457598 CTAACAGGCTACTGGTCAGGA 58.542 52.381 2.87 0.00 42.11 3.86
302 303 1.134670 GCTAACAGGCTACTGGTCAGG 60.135 57.143 2.87 0.00 42.11 3.86
303 304 1.469940 CGCTAACAGGCTACTGGTCAG 60.470 57.143 0.00 0.00 42.11 3.51
304 305 0.530744 CGCTAACAGGCTACTGGTCA 59.469 55.000 0.00 0.00 42.11 4.02
305 306 0.179108 CCGCTAACAGGCTACTGGTC 60.179 60.000 0.00 0.00 42.11 4.02
308 309 3.627002 GCAATCCGCTAACAGGCTACTG 61.627 54.545 0.00 0.00 43.64 2.74
309 310 1.473434 GCAATCCGCTAACAGGCTACT 60.473 52.381 0.00 0.00 37.77 2.57
310 311 0.938008 GCAATCCGCTAACAGGCTAC 59.062 55.000 0.00 0.00 37.77 3.58
311 312 3.379650 GCAATCCGCTAACAGGCTA 57.620 52.632 0.00 0.00 37.77 3.93
312 313 4.225497 GCAATCCGCTAACAGGCT 57.775 55.556 0.00 0.00 37.77 4.58
321 322 4.223964 GTTCGCCGAGCAATCCGC 62.224 66.667 0.00 0.00 42.91 5.54
322 323 3.913573 CGTTCGCCGAGCAATCCG 61.914 66.667 1.08 0.00 39.56 4.18
323 324 4.223964 GCGTTCGCCGAGCAATCC 62.224 66.667 5.87 0.00 39.56 3.01
324 325 2.240612 AAAGCGTTCGCCGAGCAATC 62.241 55.000 13.54 0.00 39.56 2.67
325 326 1.852067 AAAAGCGTTCGCCGAGCAAT 61.852 50.000 13.54 0.00 39.56 3.56
326 327 1.222766 TAAAAGCGTTCGCCGAGCAA 61.223 50.000 13.54 0.00 39.56 3.91
327 328 1.017177 ATAAAAGCGTTCGCCGAGCA 61.017 50.000 13.54 0.00 39.56 4.26
328 329 0.096454 AATAAAAGCGTTCGCCGAGC 59.904 50.000 13.54 0.00 39.56 5.03
329 330 1.392168 TGAATAAAAGCGTTCGCCGAG 59.608 47.619 13.54 0.00 39.56 4.63
330 331 1.430479 TGAATAAAAGCGTTCGCCGA 58.570 45.000 13.54 0.00 39.56 5.54
331 332 2.235238 TTGAATAAAAGCGTTCGCCG 57.765 45.000 13.54 0.00 40.40 6.46
332 333 5.275741 GCTTTATTGAATAAAAGCGTTCGCC 60.276 40.000 13.54 0.00 34.59 5.54
333 334 5.511729 AGCTTTATTGAATAAAAGCGTTCGC 59.488 36.000 11.12 9.24 35.72 4.70
334 335 6.961554 AGAGCTTTATTGAATAAAAGCGTTCG 59.038 34.615 11.12 0.43 35.72 3.95
335 336 7.962918 TGAGAGCTTTATTGAATAAAAGCGTTC 59.037 33.333 11.12 15.66 35.72 3.95
336 337 7.816640 TGAGAGCTTTATTGAATAAAAGCGTT 58.183 30.769 11.12 9.82 35.72 4.84
337 338 7.119846 ACTGAGAGCTTTATTGAATAAAAGCGT 59.880 33.333 11.12 9.42 35.72 5.07
338 339 7.427606 CACTGAGAGCTTTATTGAATAAAAGCG 59.572 37.037 11.12 2.30 35.72 4.68
339 340 8.239998 ACACTGAGAGCTTTATTGAATAAAAGC 58.760 33.333 11.12 14.56 34.59 3.51
343 344 8.730680 GGAAACACTGAGAGCTTTATTGAATAA 58.269 33.333 0.00 0.00 0.00 1.40
344 345 7.336931 GGGAAACACTGAGAGCTTTATTGAATA 59.663 37.037 0.00 0.00 0.00 1.75
345 346 6.151817 GGGAAACACTGAGAGCTTTATTGAAT 59.848 38.462 0.00 0.00 0.00 2.57
346 347 5.473504 GGGAAACACTGAGAGCTTTATTGAA 59.526 40.000 0.00 0.00 0.00 2.69
347 348 5.003804 GGGAAACACTGAGAGCTTTATTGA 58.996 41.667 0.00 0.00 0.00 2.57
348 349 4.142816 CGGGAAACACTGAGAGCTTTATTG 60.143 45.833 0.00 0.00 0.00 1.90
349 350 4.003648 CGGGAAACACTGAGAGCTTTATT 58.996 43.478 0.00 0.00 0.00 1.40
350 351 3.600388 CGGGAAACACTGAGAGCTTTAT 58.400 45.455 0.00 0.00 0.00 1.40
351 352 2.289444 CCGGGAAACACTGAGAGCTTTA 60.289 50.000 0.00 0.00 0.00 1.85
352 353 1.543429 CCGGGAAACACTGAGAGCTTT 60.543 52.381 0.00 0.00 0.00 3.51
353 354 0.035458 CCGGGAAACACTGAGAGCTT 59.965 55.000 0.00 0.00 0.00 3.74
354 355 1.674057 CCGGGAAACACTGAGAGCT 59.326 57.895 0.00 0.00 0.00 4.09
355 356 2.035442 GCCGGGAAACACTGAGAGC 61.035 63.158 2.18 0.00 0.00 4.09
356 357 0.250295 TTGCCGGGAAACACTGAGAG 60.250 55.000 5.67 0.00 0.00 3.20
357 358 0.181587 TTTGCCGGGAAACACTGAGA 59.818 50.000 18.09 0.00 0.00 3.27
358 359 1.028905 TTTTGCCGGGAAACACTGAG 58.971 50.000 21.81 0.00 0.00 3.35
359 360 1.475403 TTTTTGCCGGGAAACACTGA 58.525 45.000 21.81 2.78 0.00 3.41
406 407 2.676839 CAATGGCTGTGCTAGAAGACTG 59.323 50.000 0.00 0.00 0.00 3.51
471 472 3.731652 TCAACAAATCAAAGGCTGTGG 57.268 42.857 4.51 0.00 0.00 4.17
497 499 2.004017 CGTGGTTGGCGCTATTTCTAA 58.996 47.619 7.64 0.00 0.00 2.10
540 601 4.982701 GCTTGGGGCAGGCACAGT 62.983 66.667 0.00 0.00 41.35 3.55
1086 1190 2.983930 GCGGCACTCTGACTCGAGT 61.984 63.158 20.18 20.18 44.72 4.18
1696 1955 0.603065 GGGTGGTTCATTCAGTTGGC 59.397 55.000 0.00 0.00 0.00 4.52
1720 1979 3.131223 GCTGAGCTACACTGAATCTGGTA 59.869 47.826 0.00 0.00 0.00 3.25
1856 2168 7.116736 ACACTTATATTTGTTTACAGAGGGGG 58.883 38.462 0.00 0.00 0.00 5.40
1857 2169 8.575649 AACACTTATATTTGTTTACAGAGGGG 57.424 34.615 0.00 0.00 31.78 4.79
1904 2216 9.326413 CCATCCGTAAAGAAATATAAGAGTGTT 57.674 33.333 0.00 0.00 0.00 3.32
1905 2217 8.701895 TCCATCCGTAAAGAAATATAAGAGTGT 58.298 33.333 0.00 0.00 0.00 3.55
1906 2218 9.197694 CTCCATCCGTAAAGAAATATAAGAGTG 57.802 37.037 0.00 0.00 0.00 3.51
1907 2219 8.925338 ACTCCATCCGTAAAGAAATATAAGAGT 58.075 33.333 0.00 0.00 0.00 3.24
2007 2320 0.968901 TGGGTGCGATTACGAGGAGT 60.969 55.000 0.00 0.00 42.66 3.85
2039 2352 4.519350 AGATCTATCTAAATCGACGGTGCA 59.481 41.667 0.00 0.00 34.85 4.57
2285 3547 8.308931 TCACGGTAAACTGTAATTAGTCAGAAT 58.691 33.333 9.44 2.08 35.84 2.40
2447 3722 6.496565 ACCAACAGATGTGGGAAATAATTTCA 59.503 34.615 13.48 0.00 41.85 2.69
2520 3795 6.350103 TGAGTTTGATATTACACGGGCATAA 58.650 36.000 0.00 0.00 0.00 1.90
2523 3798 4.209307 TGAGTTTGATATTACACGGGCA 57.791 40.909 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.