Multiple sequence alignment - TraesCS3A01G169100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G169100 chr3A 100.000 2678 0 0 1 2678 177086106 177088783 0.000000e+00 4946.0
1 TraesCS3A01G169100 chr3D 92.620 2168 76 34 474 2610 153090559 153088445 0.000000e+00 3040.0
2 TraesCS3A01G169100 chr3D 91.463 164 13 1 223 385 153091827 153091664 9.650000e-55 224.0
3 TraesCS3A01G169100 chr3D 84.058 69 10 1 384 451 405822180 405822112 6.190000e-07 65.8
4 TraesCS3A01G169100 chr3B 90.649 2096 82 40 564 2610 224428674 224426644 0.000000e+00 2680.0
5 TraesCS3A01G169100 chr1A 99.111 225 2 0 1 225 471242556 471242780 3.210000e-109 405.0
6 TraesCS3A01G169100 chr1A 98.678 227 3 0 1 227 23771587 23771813 1.150000e-108 403.0
7 TraesCS3A01G169100 chr7B 98.678 227 3 0 1 227 220982639 220982865 1.150000e-108 403.0
8 TraesCS3A01G169100 chr7B 82.927 246 17 5 1178 1414 740683038 740682809 5.850000e-47 198.0
9 TraesCS3A01G169100 chr5A 98.678 227 3 0 1 227 11950274 11950500 1.150000e-108 403.0
10 TraesCS3A01G169100 chr5A 100.000 28 0 0 414 441 487917355 487917382 5.000000e-03 52.8
11 TraesCS3A01G169100 chr4B 97.845 232 3 1 1 230 217277936 217278167 1.490000e-107 399.0
12 TraesCS3A01G169100 chr4A 98.253 229 2 2 1 228 636650410 636650637 1.490000e-107 399.0
13 TraesCS3A01G169100 chr2A 97.071 239 4 2 1 239 754458046 754457811 1.490000e-107 399.0
14 TraesCS3A01G169100 chr7A 96.250 240 9 0 1 240 478499034 478498795 6.950000e-106 394.0
15 TraesCS3A01G169100 chr2B 96.653 239 4 4 1 238 178704214 178703979 6.950000e-106 394.0
16 TraesCS3A01G169100 chr2B 90.385 52 4 1 387 437 144435229 144435280 1.720000e-07 67.6
17 TraesCS3A01G169100 chr6B 89.024 246 18 1 1178 1414 655148131 655148376 2.020000e-76 296.0
18 TraesCS3A01G169100 chr6B 88.211 246 20 1 1178 1414 655182301 655182546 4.360000e-73 285.0
19 TraesCS3A01G169100 chr2D 93.617 47 3 0 405 451 585675322 585675276 1.330000e-08 71.3
20 TraesCS3A01G169100 chr6D 82.051 78 12 2 375 451 411402418 411402494 6.190000e-07 65.8
21 TraesCS3A01G169100 chrUn 84.746 59 9 0 393 451 266778858 266778916 2.880000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G169100 chr3A 177086106 177088783 2677 False 4946 4946 100.0000 1 2678 1 chr3A.!!$F1 2677
1 TraesCS3A01G169100 chr3D 153088445 153091827 3382 True 1632 3040 92.0415 223 2610 2 chr3D.!!$R2 2387
2 TraesCS3A01G169100 chr3B 224426644 224428674 2030 True 2680 2680 90.6490 564 2610 1 chr3B.!!$R1 2046

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
184 185 0.117541 TTCACCTGTAGCCTACCCCA 59.882 55.0 0.0 0.0 0.0 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1769 2840 0.174845 CCTCTCGCGGTAACAATCCA 59.825 55.0 6.13 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.071580 GAATGTCAAGAGAGGGCGG 57.928 57.895 0.00 0.00 0.00 6.13
19 20 0.462759 GAATGTCAAGAGAGGGCGGG 60.463 60.000 0.00 0.00 0.00 6.13
20 21 1.915078 AATGTCAAGAGAGGGCGGGG 61.915 60.000 0.00 0.00 0.00 5.73
21 22 3.003763 GTCAAGAGAGGGCGGGGT 61.004 66.667 0.00 0.00 0.00 4.95
22 23 2.683933 TCAAGAGAGGGCGGGGTC 60.684 66.667 0.00 0.00 0.00 4.46
23 24 4.148825 CAAGAGAGGGCGGGGTCG 62.149 72.222 0.00 0.00 39.81 4.79
24 25 4.377760 AAGAGAGGGCGGGGTCGA 62.378 66.667 0.00 0.00 39.00 4.20
35 36 2.463592 GGGGTCGACCGATTTTGAC 58.536 57.895 27.68 11.35 41.60 3.18
36 37 0.320946 GGGGTCGACCGATTTTGACA 60.321 55.000 27.68 0.00 41.60 3.58
37 38 1.677820 GGGGTCGACCGATTTTGACAT 60.678 52.381 27.68 0.00 41.60 3.06
38 39 1.396996 GGGTCGACCGATTTTGACATG 59.603 52.381 27.68 0.00 36.71 3.21
39 40 1.396996 GGTCGACCGATTTTGACATGG 59.603 52.381 20.85 0.00 32.13 3.66
40 41 2.343101 GTCGACCGATTTTGACATGGA 58.657 47.619 3.51 0.00 31.01 3.41
41 42 2.739913 GTCGACCGATTTTGACATGGAA 59.260 45.455 3.51 0.00 31.01 3.53
42 43 3.000041 TCGACCGATTTTGACATGGAAG 59.000 45.455 0.00 0.00 0.00 3.46
43 44 2.095853 CGACCGATTTTGACATGGAAGG 59.904 50.000 0.00 0.00 0.00 3.46
44 45 3.343617 GACCGATTTTGACATGGAAGGA 58.656 45.455 0.00 0.00 0.00 3.36
45 46 3.347216 ACCGATTTTGACATGGAAGGAG 58.653 45.455 0.00 0.00 0.00 3.69
46 47 3.244911 ACCGATTTTGACATGGAAGGAGT 60.245 43.478 0.00 0.00 0.00 3.85
47 48 3.375299 CCGATTTTGACATGGAAGGAGTC 59.625 47.826 0.00 0.00 0.00 3.36
58 59 3.786516 GGAAGGAGTCCGTTAAGAGAG 57.213 52.381 2.76 0.00 36.40 3.20
59 60 3.354467 GGAAGGAGTCCGTTAAGAGAGA 58.646 50.000 2.76 0.00 36.40 3.10
60 61 3.129113 GGAAGGAGTCCGTTAAGAGAGAC 59.871 52.174 2.76 0.00 36.40 3.36
61 62 2.725637 AGGAGTCCGTTAAGAGAGACC 58.274 52.381 2.76 0.00 0.00 3.85
62 63 2.309458 AGGAGTCCGTTAAGAGAGACCT 59.691 50.000 2.76 0.00 0.00 3.85
63 64 2.424246 GGAGTCCGTTAAGAGAGACCTG 59.576 54.545 0.00 0.00 0.00 4.00
64 65 3.345414 GAGTCCGTTAAGAGAGACCTGA 58.655 50.000 0.00 0.00 0.00 3.86
65 66 3.757493 GAGTCCGTTAAGAGAGACCTGAA 59.243 47.826 0.00 0.00 0.00 3.02
66 67 3.759618 AGTCCGTTAAGAGAGACCTGAAG 59.240 47.826 0.00 0.00 0.00 3.02
67 68 3.090037 TCCGTTAAGAGAGACCTGAAGG 58.910 50.000 0.00 0.00 42.17 3.46
68 69 3.090037 CCGTTAAGAGAGACCTGAAGGA 58.910 50.000 2.62 0.00 38.94 3.36
69 70 3.702045 CCGTTAAGAGAGACCTGAAGGAT 59.298 47.826 2.62 0.00 38.94 3.24
70 71 4.160626 CCGTTAAGAGAGACCTGAAGGATT 59.839 45.833 2.62 0.00 38.94 3.01
71 72 5.105752 CGTTAAGAGAGACCTGAAGGATTG 58.894 45.833 2.62 0.00 38.94 2.67
72 73 5.423886 GTTAAGAGAGACCTGAAGGATTGG 58.576 45.833 2.62 0.00 38.94 3.16
73 74 3.481559 AGAGAGACCTGAAGGATTGGA 57.518 47.619 2.62 0.00 38.94 3.53
74 75 3.373830 AGAGAGACCTGAAGGATTGGAG 58.626 50.000 2.62 0.00 38.94 3.86
75 76 3.103742 GAGAGACCTGAAGGATTGGAGT 58.896 50.000 2.62 0.00 38.94 3.85
76 77 4.017037 AGAGAGACCTGAAGGATTGGAGTA 60.017 45.833 2.62 0.00 38.94 2.59
77 78 4.889780 AGAGACCTGAAGGATTGGAGTAT 58.110 43.478 2.62 0.00 38.94 2.12
78 79 4.898861 AGAGACCTGAAGGATTGGAGTATC 59.101 45.833 2.62 0.00 38.94 2.24
79 80 3.639094 AGACCTGAAGGATTGGAGTATCG 59.361 47.826 2.62 0.00 38.94 2.92
80 81 3.637229 GACCTGAAGGATTGGAGTATCGA 59.363 47.826 2.62 0.00 38.94 3.59
81 82 3.385111 ACCTGAAGGATTGGAGTATCGAC 59.615 47.826 2.62 0.00 38.94 4.20
82 83 3.384789 CCTGAAGGATTGGAGTATCGACA 59.615 47.826 0.00 0.00 37.39 4.35
83 84 4.141937 CCTGAAGGATTGGAGTATCGACAA 60.142 45.833 0.00 0.00 37.39 3.18
84 85 5.414789 TGAAGGATTGGAGTATCGACAAA 57.585 39.130 0.00 0.00 34.37 2.83
85 86 5.419542 TGAAGGATTGGAGTATCGACAAAG 58.580 41.667 0.00 0.00 34.37 2.77
86 87 5.186992 TGAAGGATTGGAGTATCGACAAAGA 59.813 40.000 0.00 0.00 34.37 2.52
87 88 5.269505 AGGATTGGAGTATCGACAAAGAG 57.730 43.478 0.00 0.00 34.37 2.85
88 89 3.804873 GGATTGGAGTATCGACAAAGAGC 59.195 47.826 0.00 0.00 34.37 4.09
89 90 4.442192 GGATTGGAGTATCGACAAAGAGCT 60.442 45.833 0.00 0.00 34.37 4.09
90 91 5.221263 GGATTGGAGTATCGACAAAGAGCTA 60.221 44.000 0.00 0.00 34.37 3.32
91 92 4.902443 TGGAGTATCGACAAAGAGCTAG 57.098 45.455 0.00 0.00 34.37 3.42
92 93 3.066900 TGGAGTATCGACAAAGAGCTAGC 59.933 47.826 6.62 6.62 34.37 3.42
93 94 3.316868 GGAGTATCGACAAAGAGCTAGCT 59.683 47.826 19.45 19.45 34.37 3.32
94 95 4.515944 GGAGTATCGACAAAGAGCTAGCTA 59.484 45.833 19.38 0.00 34.37 3.32
95 96 5.182380 GGAGTATCGACAAAGAGCTAGCTAT 59.818 44.000 19.38 12.73 34.37 2.97
96 97 6.007936 AGTATCGACAAAGAGCTAGCTATG 57.992 41.667 19.38 18.66 0.00 2.23
97 98 3.717400 TCGACAAAGAGCTAGCTATGG 57.283 47.619 19.38 13.23 0.00 2.74
98 99 3.288092 TCGACAAAGAGCTAGCTATGGA 58.712 45.455 19.38 8.12 0.00 3.41
99 100 3.066900 TCGACAAAGAGCTAGCTATGGAC 59.933 47.826 19.38 10.10 0.00 4.02
100 101 3.181486 CGACAAAGAGCTAGCTATGGACA 60.181 47.826 19.38 0.00 0.00 4.02
101 102 4.367450 GACAAAGAGCTAGCTATGGACAG 58.633 47.826 19.38 6.25 0.00 3.51
102 103 3.133721 ACAAAGAGCTAGCTATGGACAGG 59.866 47.826 19.38 4.81 0.00 4.00
103 104 2.008242 AGAGCTAGCTATGGACAGGG 57.992 55.000 19.38 0.00 0.00 4.45
104 105 0.972883 GAGCTAGCTATGGACAGGGG 59.027 60.000 19.38 0.00 0.00 4.79
105 106 0.266152 AGCTAGCTATGGACAGGGGT 59.734 55.000 17.69 0.00 0.00 4.95
106 107 0.394565 GCTAGCTATGGACAGGGGTG 59.605 60.000 7.70 0.00 0.00 4.61
107 108 0.394565 CTAGCTATGGACAGGGGTGC 59.605 60.000 0.00 0.00 35.66 5.01
108 109 1.399744 TAGCTATGGACAGGGGTGCG 61.400 60.000 0.00 0.00 38.35 5.34
109 110 3.031417 GCTATGGACAGGGGTGCGT 62.031 63.158 0.00 0.00 38.35 5.24
110 111 1.153369 CTATGGACAGGGGTGCGTG 60.153 63.158 0.00 0.00 38.35 5.34
111 112 2.593468 CTATGGACAGGGGTGCGTGG 62.593 65.000 0.00 0.00 38.35 4.94
113 114 3.948719 GGACAGGGGTGCGTGGAA 61.949 66.667 0.00 0.00 0.00 3.53
114 115 2.358737 GACAGGGGTGCGTGGAAG 60.359 66.667 0.00 0.00 0.00 3.46
115 116 4.643387 ACAGGGGTGCGTGGAAGC 62.643 66.667 0.00 0.00 37.71 3.86
116 117 4.335647 CAGGGGTGCGTGGAAGCT 62.336 66.667 0.00 0.00 38.13 3.74
117 118 3.570212 AGGGGTGCGTGGAAGCTT 61.570 61.111 0.00 0.00 38.13 3.74
118 119 3.365265 GGGGTGCGTGGAAGCTTG 61.365 66.667 2.10 0.00 38.13 4.01
119 120 4.043200 GGGTGCGTGGAAGCTTGC 62.043 66.667 11.58 11.58 38.13 4.01
120 121 2.980233 GGTGCGTGGAAGCTTGCT 60.980 61.111 19.34 0.00 38.13 3.91
121 122 1.671054 GGTGCGTGGAAGCTTGCTA 60.671 57.895 19.34 2.82 38.13 3.49
122 123 1.026718 GGTGCGTGGAAGCTTGCTAT 61.027 55.000 19.34 0.00 38.13 2.97
123 124 0.375106 GTGCGTGGAAGCTTGCTATC 59.625 55.000 19.34 8.59 38.13 2.08
124 125 0.744414 TGCGTGGAAGCTTGCTATCC 60.744 55.000 19.34 6.99 38.13 2.59
125 126 0.744414 GCGTGGAAGCTTGCTATCCA 60.744 55.000 19.34 9.80 40.84 3.41
126 127 1.959042 CGTGGAAGCTTGCTATCCAT 58.041 50.000 19.34 0.00 44.55 3.41
127 128 1.600957 CGTGGAAGCTTGCTATCCATG 59.399 52.381 19.34 20.51 44.55 3.66
128 129 2.648059 GTGGAAGCTTGCTATCCATGT 58.352 47.619 19.34 0.00 44.55 3.21
129 130 2.357009 GTGGAAGCTTGCTATCCATGTG 59.643 50.000 19.34 0.00 44.55 3.21
130 131 1.336125 GGAAGCTTGCTATCCATGTGC 59.664 52.381 11.19 0.00 33.30 4.57
131 132 1.336125 GAAGCTTGCTATCCATGTGCC 59.664 52.381 2.10 0.00 0.00 5.01
132 133 0.256752 AGCTTGCTATCCATGTGCCA 59.743 50.000 0.00 0.00 0.00 4.92
133 134 0.666913 GCTTGCTATCCATGTGCCAG 59.333 55.000 0.00 0.00 0.00 4.85
134 135 1.748244 GCTTGCTATCCATGTGCCAGA 60.748 52.381 0.00 0.00 0.00 3.86
135 136 2.219458 CTTGCTATCCATGTGCCAGAG 58.781 52.381 0.00 0.00 0.00 3.35
136 137 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.00 40.48 4.09
137 138 0.888285 GCTATCCATGTGCCAGAGCC 60.888 60.000 0.00 0.00 38.69 4.70
138 139 0.471191 CTATCCATGTGCCAGAGCCA 59.529 55.000 0.00 0.00 38.69 4.75
139 140 1.073444 CTATCCATGTGCCAGAGCCAT 59.927 52.381 0.00 0.00 38.69 4.40
140 141 0.467474 ATCCATGTGCCAGAGCCATG 60.467 55.000 8.59 8.59 42.54 3.66
141 142 1.077285 CCATGTGCCAGAGCCATGA 60.077 57.895 14.22 0.00 44.14 3.07
142 143 1.101635 CCATGTGCCAGAGCCATGAG 61.102 60.000 14.22 5.17 44.14 2.90
143 144 0.393944 CATGTGCCAGAGCCATGAGT 60.394 55.000 0.00 0.00 44.14 3.41
144 145 0.330604 ATGTGCCAGAGCCATGAGTT 59.669 50.000 0.00 0.00 38.69 3.01
145 146 0.607217 TGTGCCAGAGCCATGAGTTG 60.607 55.000 0.00 0.00 38.69 3.16
154 155 3.231734 CCATGAGTTGGTTGCGAGA 57.768 52.632 0.00 0.00 40.99 4.04
155 156 1.742761 CCATGAGTTGGTTGCGAGAT 58.257 50.000 0.00 0.00 40.99 2.75
156 157 1.667724 CCATGAGTTGGTTGCGAGATC 59.332 52.381 0.00 0.00 40.99 2.75
157 158 2.625737 CATGAGTTGGTTGCGAGATCT 58.374 47.619 0.00 0.00 0.00 2.75
158 159 2.839486 TGAGTTGGTTGCGAGATCTT 57.161 45.000 0.00 0.00 0.00 2.40
159 160 3.953712 TGAGTTGGTTGCGAGATCTTA 57.046 42.857 0.00 0.00 0.00 2.10
160 161 4.471904 TGAGTTGGTTGCGAGATCTTAT 57.528 40.909 0.00 0.00 0.00 1.73
161 162 4.183865 TGAGTTGGTTGCGAGATCTTATG 58.816 43.478 0.00 0.00 0.00 1.90
162 163 3.535561 AGTTGGTTGCGAGATCTTATGG 58.464 45.455 0.00 0.00 0.00 2.74
163 164 2.614057 GTTGGTTGCGAGATCTTATGGG 59.386 50.000 0.00 0.00 0.00 4.00
164 165 1.837439 TGGTTGCGAGATCTTATGGGT 59.163 47.619 0.00 0.00 0.00 4.51
165 166 2.238646 TGGTTGCGAGATCTTATGGGTT 59.761 45.455 0.00 0.00 0.00 4.11
166 167 3.279434 GGTTGCGAGATCTTATGGGTTT 58.721 45.455 0.00 0.00 0.00 3.27
167 168 3.312697 GGTTGCGAGATCTTATGGGTTTC 59.687 47.826 0.00 0.00 0.00 2.78
168 169 3.904800 TGCGAGATCTTATGGGTTTCA 57.095 42.857 0.00 0.00 0.00 2.69
169 170 3.531538 TGCGAGATCTTATGGGTTTCAC 58.468 45.455 0.00 0.00 0.00 3.18
170 171 2.872858 GCGAGATCTTATGGGTTTCACC 59.127 50.000 0.00 0.00 37.60 4.02
171 172 3.432326 GCGAGATCTTATGGGTTTCACCT 60.432 47.826 0.00 0.00 38.64 4.00
172 173 4.122776 CGAGATCTTATGGGTTTCACCTG 58.877 47.826 0.00 0.00 38.64 4.00
173 174 4.383118 CGAGATCTTATGGGTTTCACCTGT 60.383 45.833 0.00 0.00 38.64 4.00
174 175 5.163447 CGAGATCTTATGGGTTTCACCTGTA 60.163 44.000 0.00 0.00 38.64 2.74
175 176 6.240549 AGATCTTATGGGTTTCACCTGTAG 57.759 41.667 0.00 0.00 38.64 2.74
176 177 4.216411 TCTTATGGGTTTCACCTGTAGC 57.784 45.455 0.00 0.00 38.64 3.58
177 178 3.054655 TCTTATGGGTTTCACCTGTAGCC 60.055 47.826 0.00 0.00 38.64 3.93
178 179 1.372501 ATGGGTTTCACCTGTAGCCT 58.627 50.000 0.00 0.00 38.64 4.58
179 180 2.032965 TGGGTTTCACCTGTAGCCTA 57.967 50.000 0.00 0.00 38.64 3.93
180 181 1.626825 TGGGTTTCACCTGTAGCCTAC 59.373 52.381 0.00 0.00 38.64 3.18
181 182 1.065636 GGGTTTCACCTGTAGCCTACC 60.066 57.143 0.00 0.00 38.64 3.18
182 183 1.065636 GGTTTCACCTGTAGCCTACCC 60.066 57.143 0.00 0.00 34.73 3.69
183 184 1.065636 GTTTCACCTGTAGCCTACCCC 60.066 57.143 0.00 0.00 0.00 4.95
184 185 0.117541 TTCACCTGTAGCCTACCCCA 59.882 55.000 0.00 0.00 0.00 4.96
185 186 0.117541 TCACCTGTAGCCTACCCCAA 59.882 55.000 0.00 0.00 0.00 4.12
186 187 0.252197 CACCTGTAGCCTACCCCAAC 59.748 60.000 0.00 0.00 0.00 3.77
187 188 0.118547 ACCTGTAGCCTACCCCAACT 59.881 55.000 0.00 0.00 0.00 3.16
188 189 1.286248 CCTGTAGCCTACCCCAACTT 58.714 55.000 0.00 0.00 0.00 2.66
189 190 1.065418 CCTGTAGCCTACCCCAACTTG 60.065 57.143 0.00 0.00 0.00 3.16
190 191 1.628846 CTGTAGCCTACCCCAACTTGT 59.371 52.381 0.00 0.00 0.00 3.16
191 192 2.039879 CTGTAGCCTACCCCAACTTGTT 59.960 50.000 0.00 0.00 0.00 2.83
192 193 2.444010 TGTAGCCTACCCCAACTTGTTT 59.556 45.455 0.00 0.00 0.00 2.83
193 194 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
204 205 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
205 206 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
206 207 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
207 208 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
208 209 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
209 210 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
210 211 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
211 212 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
212 213 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
213 214 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
214 215 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
215 216 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
216 217 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
217 218 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
218 219 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
219 220 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
220 221 6.227522 ACTAAAGGCTTTGTTGTTGTTGTTT 58.772 32.000 22.32 0.00 0.00 2.83
221 222 5.355467 AAAGGCTTTGTTGTTGTTGTTTG 57.645 34.783 12.53 0.00 0.00 2.93
239 240 8.826710 TGTTGTTTGTAGTTCAACATCTCTAAG 58.173 33.333 5.97 0.00 43.82 2.18
305 306 2.996621 AGATCAACGTGACTAAGCTTGC 59.003 45.455 9.86 0.00 0.00 4.01
347 348 6.609237 TCCTCAATCGATTAAGCATCTTTG 57.391 37.500 10.97 0.00 0.00 2.77
386 388 8.159344 CAAATTTTGCCCCTTTGTAATTAACA 57.841 30.769 0.00 0.00 35.88 2.41
397 1418 7.812669 CCCTTTGTAATTAACATGGTCAAACTC 59.187 37.037 0.00 0.00 38.10 3.01
402 1424 8.661257 TGTAATTAACATGGTCAAACTCATACG 58.339 33.333 0.00 0.00 31.43 3.06
429 1451 5.665381 GACCTCAGTCAAAGCTAATATGC 57.335 43.478 0.00 0.00 42.99 3.14
431 1453 4.141937 ACCTCAGTCAAAGCTAATATGCGA 60.142 41.667 0.00 0.00 38.13 5.10
432 1454 4.811024 CCTCAGTCAAAGCTAATATGCGAA 59.189 41.667 0.00 0.00 38.13 4.70
433 1455 5.050499 CCTCAGTCAAAGCTAATATGCGAAG 60.050 44.000 0.00 0.00 38.13 3.79
434 1456 5.419542 TCAGTCAAAGCTAATATGCGAAGT 58.580 37.500 0.00 0.00 38.13 3.01
435 1457 6.569780 TCAGTCAAAGCTAATATGCGAAGTA 58.430 36.000 0.00 0.00 38.13 2.24
437 1459 7.547722 TCAGTCAAAGCTAATATGCGAAGTAAA 59.452 33.333 0.00 0.00 38.13 2.01
438 1460 8.338259 CAGTCAAAGCTAATATGCGAAGTAAAT 58.662 33.333 0.00 0.00 38.13 1.40
444 1466 9.931210 AAGCTAATATGCGAAGTAAATAACAAC 57.069 29.630 0.00 0.00 38.13 3.32
445 1467 9.104965 AGCTAATATGCGAAGTAAATAACAACA 57.895 29.630 0.00 0.00 38.13 3.33
446 1468 9.370126 GCTAATATGCGAAGTAAATAACAACAG 57.630 33.333 0.00 0.00 0.00 3.16
449 1471 5.856126 TGCGAAGTAAATAACAACAGAGG 57.144 39.130 0.00 0.00 0.00 3.69
452 1474 4.935808 CGAAGTAAATAACAACAGAGGGCT 59.064 41.667 0.00 0.00 0.00 5.19
453 1475 5.411669 CGAAGTAAATAACAACAGAGGGCTT 59.588 40.000 0.00 0.00 0.00 4.35
454 1476 6.592607 CGAAGTAAATAACAACAGAGGGCTTA 59.407 38.462 0.00 0.00 0.00 3.09
455 1477 7.280205 CGAAGTAAATAACAACAGAGGGCTTAT 59.720 37.037 0.00 0.00 0.00 1.73
459 1481 2.808906 ACAACAGAGGGCTTATTCCC 57.191 50.000 0.00 0.00 46.93 3.97
467 1489 2.979814 GGGCTTATTCCCGCATTTTT 57.020 45.000 0.00 0.00 36.38 1.94
609 1632 1.713830 GCGCACTCAATAACGACCC 59.286 57.895 0.30 0.00 0.00 4.46
619 1642 0.325860 ATAACGACCCCTGCCTACCA 60.326 55.000 0.00 0.00 0.00 3.25
626 1653 1.194781 CCCCTGCCTACCATAGCGAT 61.195 60.000 0.00 0.00 0.00 4.58
732 1772 3.706373 CACCACCTCCCCTCACCG 61.706 72.222 0.00 0.00 0.00 4.94
787 1829 0.249073 CCACTCGCTAATCACCTCCG 60.249 60.000 0.00 0.00 0.00 4.63
844 1886 3.313791 GGAAAGCTAATCTCTCCTCCCT 58.686 50.000 0.00 0.00 0.00 4.20
845 1887 3.323691 GGAAAGCTAATCTCTCCTCCCTC 59.676 52.174 0.00 0.00 0.00 4.30
846 1888 2.694616 AGCTAATCTCTCCTCCCTCC 57.305 55.000 0.00 0.00 0.00 4.30
847 1889 1.149077 AGCTAATCTCTCCTCCCTCCC 59.851 57.143 0.00 0.00 0.00 4.30
893 1935 2.520458 CACCACCACCACCACCAT 59.480 61.111 0.00 0.00 0.00 3.55
895 1937 2.035626 CCACCACCACCACCATCC 59.964 66.667 0.00 0.00 0.00 3.51
1026 2074 0.961358 CTATAGGCGGGTCCTCCTCG 60.961 65.000 1.23 0.00 43.20 4.63
1456 2516 2.048222 CGCCGTTGCTCAAGGAGA 60.048 61.111 4.11 0.00 34.43 3.71
1457 2517 1.667830 CGCCGTTGCTCAAGGAGAA 60.668 57.895 4.11 0.00 34.43 2.87
1696 2756 4.200283 GGTCTGAGCCTCGCCTCG 62.200 72.222 0.00 0.00 34.56 4.63
1697 2757 4.863925 GTCTGAGCCTCGCCTCGC 62.864 72.222 0.00 0.00 34.56 5.03
1721 2781 3.090952 CGAGAGGGAGATTGATGACAC 57.909 52.381 0.00 0.00 0.00 3.67
1722 2782 2.542618 CGAGAGGGAGATTGATGACACG 60.543 54.545 0.00 0.00 0.00 4.49
1747 2818 1.873591 CTCGGGGAAATAAGGCGATTG 59.126 52.381 0.00 0.00 0.00 2.67
1765 2836 4.692625 CGATTGATTACTGGATGGATGGAC 59.307 45.833 0.00 0.00 0.00 4.02
1769 2840 2.398754 TACTGGATGGATGGACGGAT 57.601 50.000 0.00 0.00 0.00 4.18
1770 2841 0.761187 ACTGGATGGATGGACGGATG 59.239 55.000 0.00 0.00 0.00 3.51
1771 2842 0.035881 CTGGATGGATGGACGGATGG 59.964 60.000 0.00 0.00 0.00 3.51
1772 2843 0.399806 TGGATGGATGGACGGATGGA 60.400 55.000 0.00 0.00 0.00 3.41
1913 2995 1.688269 ATGCTGCTCTGCTCCTCTCC 61.688 60.000 0.00 0.00 0.00 3.71
1940 3022 5.765182 TGTTCTTGAAATGTTCTTCCTCCTC 59.235 40.000 0.00 0.00 0.00 3.71
1972 3054 2.616458 GGGGGATTCCTGTGCCTGT 61.616 63.158 2.01 0.00 35.33 4.00
1999 3081 1.338973 CCTGCGGATTGGATTGGATTG 59.661 52.381 0.00 0.00 0.00 2.67
2000 3082 1.338973 CTGCGGATTGGATTGGATTGG 59.661 52.381 0.00 0.00 0.00 3.16
2001 3083 1.064091 TGCGGATTGGATTGGATTGGA 60.064 47.619 0.00 0.00 0.00 3.53
2002 3084 2.031120 GCGGATTGGATTGGATTGGAA 58.969 47.619 0.00 0.00 0.00 3.53
2003 3085 2.629617 GCGGATTGGATTGGATTGGAAT 59.370 45.455 0.00 0.00 0.00 3.01
2004 3086 3.070015 GCGGATTGGATTGGATTGGAATT 59.930 43.478 0.00 0.00 0.00 2.17
2005 3087 4.624015 CGGATTGGATTGGATTGGAATTG 58.376 43.478 0.00 0.00 0.00 2.32
2006 3088 4.501915 CGGATTGGATTGGATTGGAATTGG 60.502 45.833 0.00 0.00 0.00 3.16
2007 3089 4.655186 GGATTGGATTGGATTGGAATTGGA 59.345 41.667 0.00 0.00 0.00 3.53
2008 3090 5.308759 GGATTGGATTGGATTGGAATTGGAT 59.691 40.000 0.00 0.00 0.00 3.41
2009 3091 6.183361 GGATTGGATTGGATTGGAATTGGATT 60.183 38.462 0.00 0.00 0.00 3.01
2059 3141 8.626526 GGTGAATTAGGAGTTTTGTTTCTTGTA 58.373 33.333 0.00 0.00 0.00 2.41
2079 3161 4.569162 TGTATAAGTGCAATGCTAACCGTC 59.431 41.667 6.82 0.00 0.00 4.79
2112 3194 0.249197 TCCTCGAGCTGCATTCGATG 60.249 55.000 19.64 17.27 45.00 3.84
2128 3210 2.441822 GATGGGATTCCTCGAGGCGG 62.442 65.000 27.39 4.45 34.44 6.13
2147 3229 1.717937 CAATTTCTGCTCGCGAGGG 59.282 57.895 35.10 14.75 0.00 4.30
2179 3261 2.134201 CGAATTCGATCGGATGGACA 57.866 50.000 23.29 0.00 43.02 4.02
2197 3279 4.067896 GGACAGAGACAAGAGAATTTGCA 58.932 43.478 0.00 0.00 0.00 4.08
2247 3329 0.533308 TCAACCACCGCGCTTAAACT 60.533 50.000 5.56 0.00 0.00 2.66
2248 3330 1.149987 CAACCACCGCGCTTAAACTA 58.850 50.000 5.56 0.00 0.00 2.24
2249 3331 1.532007 CAACCACCGCGCTTAAACTAA 59.468 47.619 5.56 0.00 0.00 2.24
2250 3332 1.150827 ACCACCGCGCTTAAACTAAC 58.849 50.000 5.56 0.00 0.00 2.34
2251 3333 1.270465 ACCACCGCGCTTAAACTAACT 60.270 47.619 5.56 0.00 0.00 2.24
2396 3478 1.535028 TGCTGCCAGAAATGTGTTACG 59.465 47.619 0.00 0.00 0.00 3.18
2397 3479 1.535462 GCTGCCAGAAATGTGTTACGT 59.465 47.619 0.00 0.00 0.00 3.57
2398 3480 2.739913 GCTGCCAGAAATGTGTTACGTA 59.260 45.455 0.00 0.00 0.00 3.57
2399 3481 3.424433 GCTGCCAGAAATGTGTTACGTAC 60.424 47.826 0.00 0.00 0.00 3.67
2419 3501 1.460504 TGCTGCGCAGTACTACTAGT 58.539 50.000 35.80 0.00 33.32 2.57
2422 3504 1.402259 CTGCGCAGTACTACTAGTGCT 59.598 52.381 29.24 1.17 44.35 4.40
2456 3538 0.602562 TCTGCGGCAAATTTTCTGGG 59.397 50.000 3.44 0.00 0.00 4.45
2538 3620 1.738350 TCGTCGTCATCCTCTCTGTTC 59.262 52.381 0.00 0.00 0.00 3.18
2551 3633 4.994217 CCTCTCTGTTCTCCTTCTTTTCAC 59.006 45.833 0.00 0.00 0.00 3.18
2557 3639 6.763610 TCTGTTCTCCTTCTTTTCACTCTTTC 59.236 38.462 0.00 0.00 0.00 2.62
2562 3644 7.282585 TCTCCTTCTTTTCACTCTTTCAATGA 58.717 34.615 0.00 0.00 0.00 2.57
2566 3648 8.574737 CCTTCTTTTCACTCTTTCAATGAAGAT 58.425 33.333 0.00 0.00 35.27 2.40
2567 3649 9.609950 CTTCTTTTCACTCTTTCAATGAAGATC 57.390 33.333 0.00 0.00 35.27 2.75
2610 3692 0.541392 GGATGGGGAATTTGGTTGGC 59.459 55.000 0.00 0.00 0.00 4.52
2611 3693 1.571955 GATGGGGAATTTGGTTGGCT 58.428 50.000 0.00 0.00 0.00 4.75
2612 3694 2.625617 GGATGGGGAATTTGGTTGGCTA 60.626 50.000 0.00 0.00 0.00 3.93
2613 3695 2.704190 TGGGGAATTTGGTTGGCTAA 57.296 45.000 0.00 0.00 0.00 3.09
2614 3696 2.534990 TGGGGAATTTGGTTGGCTAAG 58.465 47.619 0.00 0.00 0.00 2.18
2615 3697 1.207089 GGGGAATTTGGTTGGCTAAGC 59.793 52.381 4.89 4.89 34.93 3.09
2616 3698 2.179427 GGGAATTTGGTTGGCTAAGCT 58.821 47.619 13.36 0.00 35.38 3.74
2617 3699 2.094026 GGGAATTTGGTTGGCTAAGCTG 60.094 50.000 13.36 0.00 35.38 4.24
2618 3700 2.825532 GGAATTTGGTTGGCTAAGCTGA 59.174 45.455 13.36 2.28 35.38 4.26
2619 3701 3.258123 GGAATTTGGTTGGCTAAGCTGAA 59.742 43.478 13.36 8.40 35.38 3.02
2620 3702 4.262420 GGAATTTGGTTGGCTAAGCTGAAA 60.262 41.667 13.36 6.75 35.38 2.69
2621 3703 3.726291 TTTGGTTGGCTAAGCTGAAAC 57.274 42.857 13.36 0.00 35.38 2.78
2622 3704 2.656947 TGGTTGGCTAAGCTGAAACT 57.343 45.000 13.36 0.00 35.38 2.66
2623 3705 2.504367 TGGTTGGCTAAGCTGAAACTC 58.496 47.619 13.36 0.00 35.38 3.01
2624 3706 1.464997 GGTTGGCTAAGCTGAAACTCG 59.535 52.381 4.57 0.00 0.00 4.18
2625 3707 1.464997 GTTGGCTAAGCTGAAACTCGG 59.535 52.381 0.00 0.00 0.00 4.63
2631 3713 3.491652 GCTGAAACTCGGCGAGCC 61.492 66.667 34.76 23.67 39.19 4.70
2632 3714 2.815647 CTGAAACTCGGCGAGCCC 60.816 66.667 34.76 23.33 32.04 5.19
2633 3715 4.388499 TGAAACTCGGCGAGCCCC 62.388 66.667 34.76 23.00 32.04 5.80
2634 3716 4.083862 GAAACTCGGCGAGCCCCT 62.084 66.667 34.76 17.53 32.04 4.79
2635 3717 3.607370 GAAACTCGGCGAGCCCCTT 62.607 63.158 34.76 22.32 32.04 3.95
2636 3718 2.234913 GAAACTCGGCGAGCCCCTTA 62.235 60.000 34.76 0.00 32.04 2.69
2637 3719 1.623542 AAACTCGGCGAGCCCCTTAT 61.624 55.000 34.76 12.49 32.04 1.73
2638 3720 2.029307 AACTCGGCGAGCCCCTTATC 62.029 60.000 34.76 0.00 32.04 1.75
2639 3721 2.443203 TCGGCGAGCCCCTTATCA 60.443 61.111 4.99 0.00 0.00 2.15
2640 3722 2.029666 CGGCGAGCCCCTTATCAG 59.970 66.667 0.00 0.00 0.00 2.90
2641 3723 2.797278 CGGCGAGCCCCTTATCAGT 61.797 63.158 0.00 0.00 0.00 3.41
2642 3724 1.527370 GGCGAGCCCCTTATCAGTT 59.473 57.895 1.97 0.00 0.00 3.16
2643 3725 0.815615 GGCGAGCCCCTTATCAGTTG 60.816 60.000 1.97 0.00 0.00 3.16
2644 3726 0.107654 GCGAGCCCCTTATCAGTTGT 60.108 55.000 0.00 0.00 0.00 3.32
2645 3727 1.679032 GCGAGCCCCTTATCAGTTGTT 60.679 52.381 0.00 0.00 0.00 2.83
2646 3728 2.711542 CGAGCCCCTTATCAGTTGTTT 58.288 47.619 0.00 0.00 0.00 2.83
2647 3729 2.420022 CGAGCCCCTTATCAGTTGTTTG 59.580 50.000 0.00 0.00 0.00 2.93
2648 3730 2.164422 GAGCCCCTTATCAGTTGTTTGC 59.836 50.000 0.00 0.00 0.00 3.68
2649 3731 1.892474 GCCCCTTATCAGTTGTTTGCA 59.108 47.619 0.00 0.00 0.00 4.08
2650 3732 2.298729 GCCCCTTATCAGTTGTTTGCAA 59.701 45.455 0.00 0.00 0.00 4.08
2664 3746 5.259832 TGTTTGCAACAGATGTTTCATCA 57.740 34.783 0.00 0.75 36.25 3.07
2665 3747 5.283294 TGTTTGCAACAGATGTTTCATCAG 58.717 37.500 0.00 6.56 36.25 2.90
2666 3748 5.163530 TGTTTGCAACAGATGTTTCATCAGT 60.164 36.000 0.00 7.13 36.25 3.41
2667 3749 4.754372 TGCAACAGATGTTTCATCAGTC 57.246 40.909 11.47 1.39 35.83 3.51
2668 3750 4.136051 TGCAACAGATGTTTCATCAGTCA 58.864 39.130 11.47 3.53 35.83 3.41
2669 3751 4.763279 TGCAACAGATGTTTCATCAGTCAT 59.237 37.500 11.47 0.00 35.83 3.06
2670 3752 5.939296 TGCAACAGATGTTTCATCAGTCATA 59.061 36.000 11.47 0.00 35.83 2.15
2671 3753 6.600427 TGCAACAGATGTTTCATCAGTCATAT 59.400 34.615 11.47 0.00 35.83 1.78
2672 3754 7.769970 TGCAACAGATGTTTCATCAGTCATATA 59.230 33.333 11.47 0.00 35.83 0.86
2673 3755 8.615211 GCAACAGATGTTTCATCAGTCATATAA 58.385 33.333 11.47 0.00 35.83 0.98
2676 3758 9.671279 ACAGATGTTTCATCAGTCATATAAACA 57.329 29.630 11.47 0.00 40.07 2.83
2677 3759 9.926751 CAGATGTTTCATCAGTCATATAAACAC 57.073 33.333 11.47 0.00 39.01 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.462759 CCCGCCCTCTCTTGACATTC 60.463 60.000 0.00 0.00 0.00 2.67
1 2 1.604378 CCCGCCCTCTCTTGACATT 59.396 57.895 0.00 0.00 0.00 2.71
2 3 2.370445 CCCCGCCCTCTCTTGACAT 61.370 63.158 0.00 0.00 0.00 3.06
3 4 3.003173 CCCCGCCCTCTCTTGACA 61.003 66.667 0.00 0.00 0.00 3.58
4 5 3.003763 ACCCCGCCCTCTCTTGAC 61.004 66.667 0.00 0.00 0.00 3.18
5 6 2.683933 GACCCCGCCCTCTCTTGA 60.684 66.667 0.00 0.00 0.00 3.02
6 7 4.148825 CGACCCCGCCCTCTCTTG 62.149 72.222 0.00 0.00 0.00 3.02
7 8 4.377760 TCGACCCCGCCCTCTCTT 62.378 66.667 0.00 0.00 35.37 2.85
17 18 0.320946 TGTCAAAATCGGTCGACCCC 60.321 55.000 28.52 5.39 0.00 4.95
18 19 1.396996 CATGTCAAAATCGGTCGACCC 59.603 52.381 28.52 12.33 0.00 4.46
19 20 1.396996 CCATGTCAAAATCGGTCGACC 59.603 52.381 25.28 25.28 0.00 4.79
20 21 2.343101 TCCATGTCAAAATCGGTCGAC 58.657 47.619 7.13 7.13 0.00 4.20
21 22 2.753055 TCCATGTCAAAATCGGTCGA 57.247 45.000 0.00 0.00 0.00 4.20
22 23 2.095853 CCTTCCATGTCAAAATCGGTCG 59.904 50.000 0.00 0.00 0.00 4.79
23 24 3.343617 TCCTTCCATGTCAAAATCGGTC 58.656 45.455 0.00 0.00 0.00 4.79
24 25 3.244911 ACTCCTTCCATGTCAAAATCGGT 60.245 43.478 0.00 0.00 0.00 4.69
25 26 3.347216 ACTCCTTCCATGTCAAAATCGG 58.653 45.455 0.00 0.00 0.00 4.18
26 27 3.375299 GGACTCCTTCCATGTCAAAATCG 59.625 47.826 0.00 0.00 45.10 3.34
27 28 3.375299 CGGACTCCTTCCATGTCAAAATC 59.625 47.826 0.00 0.00 46.29 2.17
28 29 3.244911 ACGGACTCCTTCCATGTCAAAAT 60.245 43.478 0.00 0.00 46.29 1.82
29 30 2.105821 ACGGACTCCTTCCATGTCAAAA 59.894 45.455 0.00 0.00 46.29 2.44
30 31 1.697432 ACGGACTCCTTCCATGTCAAA 59.303 47.619 0.00 0.00 46.29 2.69
31 32 1.348064 ACGGACTCCTTCCATGTCAA 58.652 50.000 0.00 0.00 46.29 3.18
32 33 1.348064 AACGGACTCCTTCCATGTCA 58.652 50.000 0.00 0.00 46.29 3.58
33 34 3.194968 TCTTAACGGACTCCTTCCATGTC 59.805 47.826 0.00 0.00 46.29 3.06
34 35 3.170717 TCTTAACGGACTCCTTCCATGT 58.829 45.455 0.00 0.00 46.29 3.21
35 36 3.447586 TCTCTTAACGGACTCCTTCCATG 59.552 47.826 0.00 0.00 46.29 3.66
36 37 3.702045 CTCTCTTAACGGACTCCTTCCAT 59.298 47.826 0.00 0.00 46.29 3.41
37 38 3.090037 CTCTCTTAACGGACTCCTTCCA 58.910 50.000 0.00 0.00 46.29 3.53
38 39 3.129113 GTCTCTCTTAACGGACTCCTTCC 59.871 52.174 0.00 0.00 41.75 3.46
39 40 3.129113 GGTCTCTCTTAACGGACTCCTTC 59.871 52.174 0.00 0.00 0.00 3.46
40 41 3.090790 GGTCTCTCTTAACGGACTCCTT 58.909 50.000 0.00 0.00 0.00 3.36
41 42 2.309458 AGGTCTCTCTTAACGGACTCCT 59.691 50.000 0.00 0.00 0.00 3.69
42 43 2.424246 CAGGTCTCTCTTAACGGACTCC 59.576 54.545 0.00 0.00 0.00 3.85
43 44 3.345414 TCAGGTCTCTCTTAACGGACTC 58.655 50.000 0.00 0.00 0.00 3.36
44 45 3.436577 TCAGGTCTCTCTTAACGGACT 57.563 47.619 0.00 0.00 0.00 3.85
45 46 3.119424 CCTTCAGGTCTCTCTTAACGGAC 60.119 52.174 0.00 0.00 0.00 4.79
46 47 3.090037 CCTTCAGGTCTCTCTTAACGGA 58.910 50.000 0.00 0.00 0.00 4.69
47 48 3.090037 TCCTTCAGGTCTCTCTTAACGG 58.910 50.000 0.00 0.00 36.34 4.44
48 49 4.993029 ATCCTTCAGGTCTCTCTTAACG 57.007 45.455 0.00 0.00 36.34 3.18
49 50 5.187967 TCCAATCCTTCAGGTCTCTCTTAAC 59.812 44.000 0.00 0.00 36.34 2.01
50 51 5.342017 TCCAATCCTTCAGGTCTCTCTTAA 58.658 41.667 0.00 0.00 36.34 1.85
51 52 4.947883 TCCAATCCTTCAGGTCTCTCTTA 58.052 43.478 0.00 0.00 36.34 2.10
52 53 3.774216 CTCCAATCCTTCAGGTCTCTCTT 59.226 47.826 0.00 0.00 36.34 2.85
53 54 3.245948 ACTCCAATCCTTCAGGTCTCTCT 60.246 47.826 0.00 0.00 36.34 3.10
54 55 3.103742 ACTCCAATCCTTCAGGTCTCTC 58.896 50.000 0.00 0.00 36.34 3.20
55 56 3.197927 ACTCCAATCCTTCAGGTCTCT 57.802 47.619 0.00 0.00 36.34 3.10
56 57 4.261825 CGATACTCCAATCCTTCAGGTCTC 60.262 50.000 0.00 0.00 36.34 3.36
57 58 3.639094 CGATACTCCAATCCTTCAGGTCT 59.361 47.826 0.00 0.00 36.34 3.85
58 59 3.637229 TCGATACTCCAATCCTTCAGGTC 59.363 47.826 0.00 0.00 36.34 3.85
59 60 3.385111 GTCGATACTCCAATCCTTCAGGT 59.615 47.826 0.00 0.00 36.34 4.00
60 61 3.384789 TGTCGATACTCCAATCCTTCAGG 59.615 47.826 0.00 0.00 0.00 3.86
61 62 4.655762 TGTCGATACTCCAATCCTTCAG 57.344 45.455 0.00 0.00 0.00 3.02
62 63 5.186992 TCTTTGTCGATACTCCAATCCTTCA 59.813 40.000 0.00 0.00 0.00 3.02
63 64 5.661458 TCTTTGTCGATACTCCAATCCTTC 58.339 41.667 0.00 0.00 0.00 3.46
64 65 5.665459 CTCTTTGTCGATACTCCAATCCTT 58.335 41.667 0.00 0.00 0.00 3.36
65 66 4.442192 GCTCTTTGTCGATACTCCAATCCT 60.442 45.833 0.00 0.00 0.00 3.24
66 67 3.804873 GCTCTTTGTCGATACTCCAATCC 59.195 47.826 0.00 0.00 0.00 3.01
67 68 4.688021 AGCTCTTTGTCGATACTCCAATC 58.312 43.478 0.00 0.00 0.00 2.67
68 69 4.744795 AGCTCTTTGTCGATACTCCAAT 57.255 40.909 0.00 0.00 0.00 3.16
69 70 4.440250 GCTAGCTCTTTGTCGATACTCCAA 60.440 45.833 7.70 0.00 0.00 3.53
70 71 3.066900 GCTAGCTCTTTGTCGATACTCCA 59.933 47.826 7.70 0.00 0.00 3.86
71 72 3.316868 AGCTAGCTCTTTGTCGATACTCC 59.683 47.826 12.68 0.00 0.00 3.85
72 73 4.561735 AGCTAGCTCTTTGTCGATACTC 57.438 45.455 12.68 0.00 0.00 2.59
73 74 5.048364 CCATAGCTAGCTCTTTGTCGATACT 60.048 44.000 23.26 0.00 0.00 2.12
74 75 5.048643 TCCATAGCTAGCTCTTTGTCGATAC 60.049 44.000 23.26 0.00 0.00 2.24
75 76 5.048643 GTCCATAGCTAGCTCTTTGTCGATA 60.049 44.000 23.26 0.00 0.00 2.92
76 77 3.891977 TCCATAGCTAGCTCTTTGTCGAT 59.108 43.478 23.26 3.19 0.00 3.59
77 78 3.066900 GTCCATAGCTAGCTCTTTGTCGA 59.933 47.826 23.26 8.50 0.00 4.20
78 79 3.181486 TGTCCATAGCTAGCTCTTTGTCG 60.181 47.826 23.26 6.37 0.00 4.35
79 80 4.367450 CTGTCCATAGCTAGCTCTTTGTC 58.633 47.826 23.26 12.44 0.00 3.18
80 81 3.133721 CCTGTCCATAGCTAGCTCTTTGT 59.866 47.826 23.26 0.00 0.00 2.83
81 82 3.494048 CCCTGTCCATAGCTAGCTCTTTG 60.494 52.174 23.26 16.78 0.00 2.77
82 83 2.703007 CCCTGTCCATAGCTAGCTCTTT 59.297 50.000 23.26 4.57 0.00 2.52
83 84 2.324541 CCCTGTCCATAGCTAGCTCTT 58.675 52.381 23.26 7.47 0.00 2.85
84 85 1.482177 CCCCTGTCCATAGCTAGCTCT 60.482 57.143 23.26 9.05 0.00 4.09
85 86 0.972883 CCCCTGTCCATAGCTAGCTC 59.027 60.000 23.26 7.00 0.00 4.09
86 87 0.266152 ACCCCTGTCCATAGCTAGCT 59.734 55.000 23.12 23.12 0.00 3.32
87 88 0.394565 CACCCCTGTCCATAGCTAGC 59.605 60.000 6.62 6.62 0.00 3.42
88 89 0.394565 GCACCCCTGTCCATAGCTAG 59.605 60.000 0.00 0.00 0.00 3.42
89 90 1.399744 CGCACCCCTGTCCATAGCTA 61.400 60.000 0.00 0.00 0.00 3.32
90 91 2.735772 CGCACCCCTGTCCATAGCT 61.736 63.158 0.00 0.00 0.00 3.32
91 92 2.203070 CGCACCCCTGTCCATAGC 60.203 66.667 0.00 0.00 0.00 2.97
92 93 1.153369 CACGCACCCCTGTCCATAG 60.153 63.158 0.00 0.00 0.00 2.23
93 94 2.665089 CCACGCACCCCTGTCCATA 61.665 63.158 0.00 0.00 0.00 2.74
94 95 4.033776 CCACGCACCCCTGTCCAT 62.034 66.667 0.00 0.00 0.00 3.41
96 97 3.901797 CTTCCACGCACCCCTGTCC 62.902 68.421 0.00 0.00 0.00 4.02
97 98 2.358737 CTTCCACGCACCCCTGTC 60.359 66.667 0.00 0.00 0.00 3.51
98 99 4.643387 GCTTCCACGCACCCCTGT 62.643 66.667 0.00 0.00 0.00 4.00
99 100 3.850098 AAGCTTCCACGCACCCCTG 62.850 63.158 0.00 0.00 0.00 4.45
100 101 3.570212 AAGCTTCCACGCACCCCT 61.570 61.111 0.00 0.00 0.00 4.79
101 102 3.365265 CAAGCTTCCACGCACCCC 61.365 66.667 0.00 0.00 0.00 4.95
102 103 4.043200 GCAAGCTTCCACGCACCC 62.043 66.667 0.00 0.00 0.00 4.61
103 104 1.026718 ATAGCAAGCTTCCACGCACC 61.027 55.000 8.96 0.00 0.00 5.01
104 105 0.375106 GATAGCAAGCTTCCACGCAC 59.625 55.000 8.96 0.00 0.00 5.34
105 106 0.744414 GGATAGCAAGCTTCCACGCA 60.744 55.000 8.96 0.00 0.00 5.24
106 107 0.744414 TGGATAGCAAGCTTCCACGC 60.744 55.000 16.61 0.00 34.65 5.34
107 108 1.600957 CATGGATAGCAAGCTTCCACG 59.399 52.381 20.41 13.24 42.09 4.94
108 109 2.357009 CACATGGATAGCAAGCTTCCAC 59.643 50.000 20.41 0.00 42.09 4.02
109 110 2.646930 CACATGGATAGCAAGCTTCCA 58.353 47.619 20.33 20.33 43.37 3.53
110 111 1.336125 GCACATGGATAGCAAGCTTCC 59.664 52.381 0.00 7.95 0.00 3.46
111 112 1.336125 GGCACATGGATAGCAAGCTTC 59.664 52.381 0.00 0.00 0.00 3.86
112 113 1.341285 TGGCACATGGATAGCAAGCTT 60.341 47.619 0.00 0.00 0.00 3.74
113 114 0.256752 TGGCACATGGATAGCAAGCT 59.743 50.000 0.00 0.00 0.00 3.74
114 115 0.666913 CTGGCACATGGATAGCAAGC 59.333 55.000 0.00 0.00 38.20 4.01
115 116 2.219458 CTCTGGCACATGGATAGCAAG 58.781 52.381 0.00 0.00 38.20 4.01
116 117 1.748244 GCTCTGGCACATGGATAGCAA 60.748 52.381 0.00 0.00 38.20 3.91
117 118 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.00 38.20 3.49
118 119 0.888285 GGCTCTGGCACATGGATAGC 60.888 60.000 0.00 0.00 38.20 2.97
119 120 0.471191 TGGCTCTGGCACATGGATAG 59.529 55.000 0.00 0.00 38.20 2.08
120 121 1.142936 ATGGCTCTGGCACATGGATA 58.857 50.000 0.00 0.00 41.84 2.59
121 122 0.467474 CATGGCTCTGGCACATGGAT 60.467 55.000 7.68 0.00 41.84 3.41
122 123 1.077285 CATGGCTCTGGCACATGGA 60.077 57.895 7.68 0.00 41.84 3.41
123 124 1.077285 TCATGGCTCTGGCACATGG 60.077 57.895 13.76 0.00 41.84 3.66
124 125 0.393944 ACTCATGGCTCTGGCACATG 60.394 55.000 8.97 8.97 41.84 3.21
125 126 0.330604 AACTCATGGCTCTGGCACAT 59.669 50.000 0.00 0.00 41.84 3.21
126 127 0.607217 CAACTCATGGCTCTGGCACA 60.607 55.000 0.00 0.00 41.84 4.57
127 128 1.310933 CCAACTCATGGCTCTGGCAC 61.311 60.000 0.00 0.00 43.80 5.01
128 129 1.001764 CCAACTCATGGCTCTGGCA 60.002 57.895 0.00 0.00 43.80 4.92
129 130 3.915575 CCAACTCATGGCTCTGGC 58.084 61.111 0.00 0.00 43.80 4.85
137 138 2.625737 AGATCTCGCAACCAACTCATG 58.374 47.619 0.00 0.00 0.00 3.07
138 139 3.340814 AAGATCTCGCAACCAACTCAT 57.659 42.857 0.00 0.00 0.00 2.90
139 140 2.839486 AAGATCTCGCAACCAACTCA 57.161 45.000 0.00 0.00 0.00 3.41
140 141 3.557595 CCATAAGATCTCGCAACCAACTC 59.442 47.826 0.00 0.00 0.00 3.01
141 142 3.535561 CCATAAGATCTCGCAACCAACT 58.464 45.455 0.00 0.00 0.00 3.16
142 143 2.614057 CCCATAAGATCTCGCAACCAAC 59.386 50.000 0.00 0.00 0.00 3.77
143 144 2.238646 ACCCATAAGATCTCGCAACCAA 59.761 45.455 0.00 0.00 0.00 3.67
144 145 1.837439 ACCCATAAGATCTCGCAACCA 59.163 47.619 0.00 0.00 0.00 3.67
145 146 2.622064 ACCCATAAGATCTCGCAACC 57.378 50.000 0.00 0.00 0.00 3.77
146 147 3.938963 TGAAACCCATAAGATCTCGCAAC 59.061 43.478 0.00 0.00 0.00 4.17
147 148 3.938963 GTGAAACCCATAAGATCTCGCAA 59.061 43.478 0.00 0.00 0.00 4.85
148 149 3.531538 GTGAAACCCATAAGATCTCGCA 58.468 45.455 0.00 0.00 0.00 5.10
163 164 1.065636 GGGGTAGGCTACAGGTGAAAC 60.066 57.143 24.96 5.94 0.00 2.78
164 165 1.282382 GGGGTAGGCTACAGGTGAAA 58.718 55.000 24.96 0.00 0.00 2.69
165 166 0.117541 TGGGGTAGGCTACAGGTGAA 59.882 55.000 24.96 2.75 0.00 3.18
166 167 0.117541 TTGGGGTAGGCTACAGGTGA 59.882 55.000 24.96 5.13 0.00 4.02
167 168 0.252197 GTTGGGGTAGGCTACAGGTG 59.748 60.000 24.96 0.00 0.00 4.00
168 169 0.118547 AGTTGGGGTAGGCTACAGGT 59.881 55.000 24.96 1.67 0.00 4.00
169 170 1.065418 CAAGTTGGGGTAGGCTACAGG 60.065 57.143 24.96 2.56 0.00 4.00
170 171 1.628846 ACAAGTTGGGGTAGGCTACAG 59.371 52.381 24.96 7.35 0.00 2.74
171 172 1.737199 ACAAGTTGGGGTAGGCTACA 58.263 50.000 24.96 3.05 0.00 2.74
172 173 2.817844 CAAACAAGTTGGGGTAGGCTAC 59.182 50.000 16.40 16.40 33.18 3.58
173 174 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
174 175 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
183 184 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
184 185 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
185 186 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
186 187 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
187 188 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
188 189 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
189 190 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
190 191 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
191 192 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
192 193 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
193 194 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
194 195 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
195 196 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
196 197 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
197 198 6.147000 ACAAACAACAACAACAAAGCCTTTAG 59.853 34.615 0.00 0.00 0.00 1.85
198 199 5.992217 ACAAACAACAACAACAAAGCCTTTA 59.008 32.000 0.00 0.00 0.00 1.85
199 200 4.819088 ACAAACAACAACAACAAAGCCTTT 59.181 33.333 0.00 0.00 0.00 3.11
200 201 4.384940 ACAAACAACAACAACAAAGCCTT 58.615 34.783 0.00 0.00 0.00 4.35
201 202 4.001618 ACAAACAACAACAACAAAGCCT 57.998 36.364 0.00 0.00 0.00 4.58
202 203 4.926832 ACTACAAACAACAACAACAAAGCC 59.073 37.500 0.00 0.00 0.00 4.35
203 204 6.144724 TGAACTACAAACAACAACAACAAAGC 59.855 34.615 0.00 0.00 0.00 3.51
204 205 7.630470 TGAACTACAAACAACAACAACAAAG 57.370 32.000 0.00 0.00 0.00 2.77
205 206 7.491372 TGTTGAACTACAAACAACAACAACAAA 59.509 29.630 0.00 0.00 46.56 2.83
206 207 6.978659 TGTTGAACTACAAACAACAACAACAA 59.021 30.769 0.00 0.00 46.56 2.83
207 208 6.504398 TGTTGAACTACAAACAACAACAACA 58.496 32.000 0.00 0.00 46.56 3.33
208 209 6.994868 TGTTGAACTACAAACAACAACAAC 57.005 33.333 0.00 0.00 46.56 3.32
214 215 8.283291 CCTTAGAGATGTTGAACTACAAACAAC 58.717 37.037 0.00 0.00 42.51 3.32
215 216 7.041372 GCCTTAGAGATGTTGAACTACAAACAA 60.041 37.037 0.00 0.00 40.36 2.83
216 217 6.426937 GCCTTAGAGATGTTGAACTACAAACA 59.573 38.462 0.00 0.00 40.36 2.83
217 218 6.426937 TGCCTTAGAGATGTTGAACTACAAAC 59.573 38.462 0.00 0.00 40.36 2.93
218 219 6.530120 TGCCTTAGAGATGTTGAACTACAAA 58.470 36.000 0.00 0.00 40.36 2.83
219 220 6.109156 TGCCTTAGAGATGTTGAACTACAA 57.891 37.500 0.00 0.00 36.02 2.41
220 221 5.738619 TGCCTTAGAGATGTTGAACTACA 57.261 39.130 0.00 0.00 0.00 2.74
221 222 7.435068 TTTTGCCTTAGAGATGTTGAACTAC 57.565 36.000 0.00 0.00 0.00 2.73
278 279 4.748892 CTTAGTCACGTTGATCTCATGGT 58.251 43.478 0.00 0.00 0.00 3.55
284 285 2.996621 GCAAGCTTAGTCACGTTGATCT 59.003 45.455 0.00 0.00 0.00 2.75
286 287 2.996621 GAGCAAGCTTAGTCACGTTGAT 59.003 45.455 0.00 0.00 0.00 2.57
288 289 1.125021 CGAGCAAGCTTAGTCACGTTG 59.875 52.381 0.00 0.00 0.00 4.10
291 292 1.698165 TTCGAGCAAGCTTAGTCACG 58.302 50.000 0.00 2.44 0.00 4.35
305 306 6.800543 TGAGGATCTTTAAGTCTCATTCGAG 58.199 40.000 9.71 0.00 36.90 4.04
347 348 5.922739 CAAAATTTGCCTCCAAGTTTACC 57.077 39.130 0.00 0.00 39.16 2.85
377 379 8.875803 TCGTATGAGTTTGACCATGTTAATTAC 58.124 33.333 0.00 0.00 0.00 1.89
385 387 6.421377 TCAAATCGTATGAGTTTGACCATG 57.579 37.500 13.79 0.00 37.05 3.66
425 1447 6.537301 CCCTCTGTTGTTATTTACTTCGCATA 59.463 38.462 0.00 0.00 0.00 3.14
426 1448 5.354234 CCCTCTGTTGTTATTTACTTCGCAT 59.646 40.000 0.00 0.00 0.00 4.73
427 1449 4.693566 CCCTCTGTTGTTATTTACTTCGCA 59.306 41.667 0.00 0.00 0.00 5.10
428 1450 4.436986 GCCCTCTGTTGTTATTTACTTCGC 60.437 45.833 0.00 0.00 0.00 4.70
429 1451 4.935808 AGCCCTCTGTTGTTATTTACTTCG 59.064 41.667 0.00 0.00 0.00 3.79
431 1453 8.879427 AATAAGCCCTCTGTTGTTATTTACTT 57.121 30.769 0.00 0.00 0.00 2.24
432 1454 7.556635 GGAATAAGCCCTCTGTTGTTATTTACT 59.443 37.037 0.00 0.00 0.00 2.24
433 1455 7.201794 GGGAATAAGCCCTCTGTTGTTATTTAC 60.202 40.741 0.00 0.00 45.12 2.01
434 1456 6.831868 GGGAATAAGCCCTCTGTTGTTATTTA 59.168 38.462 0.00 0.00 45.12 1.40
435 1457 5.656859 GGGAATAAGCCCTCTGTTGTTATTT 59.343 40.000 0.00 0.00 45.12 1.40
437 1459 4.686122 CGGGAATAAGCCCTCTGTTGTTAT 60.686 45.833 0.00 0.00 46.44 1.89
438 1460 3.370103 CGGGAATAAGCCCTCTGTTGTTA 60.370 47.826 0.00 0.00 46.44 2.41
440 1462 1.065418 CGGGAATAAGCCCTCTGTTGT 60.065 52.381 0.00 0.00 46.44 3.32
441 1463 1.668419 CGGGAATAAGCCCTCTGTTG 58.332 55.000 0.00 0.00 46.44 3.33
443 1465 1.271840 TGCGGGAATAAGCCCTCTGT 61.272 55.000 0.00 0.00 46.44 3.41
444 1466 0.109342 ATGCGGGAATAAGCCCTCTG 59.891 55.000 0.00 0.00 46.44 3.35
445 1467 0.846693 AATGCGGGAATAAGCCCTCT 59.153 50.000 0.00 0.00 46.44 3.69
446 1468 1.692411 AAATGCGGGAATAAGCCCTC 58.308 50.000 0.00 0.00 46.44 4.30
447 1469 2.159179 AAAATGCGGGAATAAGCCCT 57.841 45.000 0.00 0.00 46.44 5.19
448 1470 2.979814 AAAAATGCGGGAATAAGCCC 57.020 45.000 0.00 0.00 45.10 5.19
467 1489 9.887406 GAAATGTGGAAGATACGTCTTTTAAAA 57.113 29.630 0.00 0.00 44.57 1.52
468 1490 8.225107 CGAAATGTGGAAGATACGTCTTTTAAA 58.775 33.333 0.00 0.00 44.57 1.52
469 1491 7.622672 GCGAAATGTGGAAGATACGTCTTTTAA 60.623 37.037 0.00 0.00 44.57 1.52
470 1492 6.183360 GCGAAATGTGGAAGATACGTCTTTTA 60.183 38.462 0.00 0.00 44.57 1.52
471 1493 5.390567 GCGAAATGTGGAAGATACGTCTTTT 60.391 40.000 0.00 0.00 44.57 2.27
472 1494 4.092968 GCGAAATGTGGAAGATACGTCTTT 59.907 41.667 0.00 0.00 44.57 2.52
474 1496 3.187700 GCGAAATGTGGAAGATACGTCT 58.812 45.455 0.00 0.00 35.82 4.18
475 1497 2.284417 GGCGAAATGTGGAAGATACGTC 59.716 50.000 0.00 0.00 0.00 4.34
476 1498 2.277084 GGCGAAATGTGGAAGATACGT 58.723 47.619 0.00 0.00 0.00 3.57
571 1593 3.608073 CGCGCTTTCTTATTTCCCTTTTG 59.392 43.478 5.56 0.00 0.00 2.44
609 1632 0.109086 CGATCGCTATGGTAGGCAGG 60.109 60.000 0.26 0.00 0.00 4.85
619 1642 2.174592 CGCTCGCTCGATCGCTAT 59.825 61.111 11.09 0.00 0.00 2.97
732 1772 1.889530 AAGGAGGAGTAGTGCGGTGC 61.890 60.000 0.00 0.00 0.00 5.01
787 1829 1.131693 GTACTTATTTGGTGGTGCGGC 59.868 52.381 0.00 0.00 0.00 6.53
796 1838 1.385528 GGGTGGGCGTACTTATTTGG 58.614 55.000 0.00 0.00 0.00 3.28
844 1886 3.780850 GGAGTATGAAGAAGAAAGGGGGA 59.219 47.826 0.00 0.00 0.00 4.81
845 1887 3.117851 GGGAGTATGAAGAAGAAAGGGGG 60.118 52.174 0.00 0.00 0.00 5.40
846 1888 3.523564 TGGGAGTATGAAGAAGAAAGGGG 59.476 47.826 0.00 0.00 0.00 4.79
847 1889 4.518249 GTGGGAGTATGAAGAAGAAAGGG 58.482 47.826 0.00 0.00 0.00 3.95
893 1935 0.840722 GGTGGGTGGGAGAAAGAGGA 60.841 60.000 0.00 0.00 0.00 3.71
895 1937 1.068121 AAGGTGGGTGGGAGAAAGAG 58.932 55.000 0.00 0.00 0.00 2.85
968 2016 1.485397 CACCTCGATCGAGCAATCAG 58.515 55.000 34.54 23.26 40.69 2.90
1456 2516 1.128188 AGCCGGTCCTTCACCTTCTT 61.128 55.000 1.90 0.00 44.21 2.52
1457 2517 1.536662 AGCCGGTCCTTCACCTTCT 60.537 57.895 1.90 0.00 44.21 2.85
1652 2712 4.271816 CCATCTCGGCCTCGTCGG 62.272 72.222 0.00 0.00 37.69 4.79
1700 2760 2.034878 TGTCATCAATCTCCCTCTCGG 58.965 52.381 0.00 0.00 0.00 4.63
1705 2765 2.103771 CCATCGTGTCATCAATCTCCCT 59.896 50.000 0.00 0.00 0.00 4.20
1722 2782 1.897560 CCTTATTTCCCCGAGCCATC 58.102 55.000 0.00 0.00 0.00 3.51
1747 2818 2.632996 TCCGTCCATCCATCCAGTAATC 59.367 50.000 0.00 0.00 0.00 1.75
1765 2836 0.528901 TCGCGGTAACAATCCATCCG 60.529 55.000 6.13 0.00 43.37 4.18
1769 2840 0.174845 CCTCTCGCGGTAACAATCCA 59.825 55.000 6.13 0.00 0.00 3.41
1770 2841 0.529992 CCCTCTCGCGGTAACAATCC 60.530 60.000 6.13 0.00 0.00 3.01
1771 2842 0.529992 CCCCTCTCGCGGTAACAATC 60.530 60.000 6.13 0.00 0.00 2.67
1772 2843 1.520666 CCCCTCTCGCGGTAACAAT 59.479 57.895 6.13 0.00 0.00 2.71
1913 2995 6.382869 AGGAAGAACATTTCAAGAACACAG 57.617 37.500 0.00 0.00 0.00 3.66
1940 3022 4.397348 CCCCCGTCTTGTTTCAGG 57.603 61.111 0.00 0.00 0.00 3.86
1999 3081 6.403527 GCCAAACAAAAGCATAATCCAATTCC 60.404 38.462 0.00 0.00 0.00 3.01
2000 3082 6.372381 AGCCAAACAAAAGCATAATCCAATTC 59.628 34.615 0.00 0.00 0.00 2.17
2001 3083 6.149807 CAGCCAAACAAAAGCATAATCCAATT 59.850 34.615 0.00 0.00 0.00 2.32
2002 3084 5.644636 CAGCCAAACAAAAGCATAATCCAAT 59.355 36.000 0.00 0.00 0.00 3.16
2003 3085 4.996122 CAGCCAAACAAAAGCATAATCCAA 59.004 37.500 0.00 0.00 0.00 3.53
2004 3086 4.040217 ACAGCCAAACAAAAGCATAATCCA 59.960 37.500 0.00 0.00 0.00 3.41
2005 3087 4.389687 CACAGCCAAACAAAAGCATAATCC 59.610 41.667 0.00 0.00 0.00 3.01
2006 3088 4.143052 GCACAGCCAAACAAAAGCATAATC 60.143 41.667 0.00 0.00 0.00 1.75
2007 3089 3.747529 GCACAGCCAAACAAAAGCATAAT 59.252 39.130 0.00 0.00 0.00 1.28
2008 3090 3.129871 GCACAGCCAAACAAAAGCATAA 58.870 40.909 0.00 0.00 0.00 1.90
2009 3091 2.753296 GCACAGCCAAACAAAAGCATA 58.247 42.857 0.00 0.00 0.00 3.14
2059 3141 3.623060 CAGACGGTTAGCATTGCACTTAT 59.377 43.478 11.91 0.00 0.00 1.73
2060 3142 3.000041 CAGACGGTTAGCATTGCACTTA 59.000 45.455 11.91 0.00 0.00 2.24
2079 3161 2.871022 CTCGAGGAAGCCATGAAATCAG 59.129 50.000 3.91 0.00 0.00 2.90
2112 3194 4.610714 GCCGCCTCGAGGAATCCC 62.611 72.222 35.69 15.61 37.39 3.85
2147 3229 5.331905 CGATCGAATTCGGATTTCTGTTCTC 60.332 44.000 26.47 5.23 40.29 2.87
2174 3256 4.067896 GCAAATTCTCTTGTCTCTGTCCA 58.932 43.478 0.00 0.00 0.00 4.02
2179 3261 4.518211 CCACTTGCAAATTCTCTTGTCTCT 59.482 41.667 0.00 0.00 0.00 3.10
2197 3279 0.669625 GTTTACGAGCCGAGCCACTT 60.670 55.000 1.50 0.00 0.00 3.16
2247 3329 9.512435 GTCTGATCTTTGTTAGCGTTATAGTTA 57.488 33.333 0.00 0.00 0.00 2.24
2248 3330 8.033038 TGTCTGATCTTTGTTAGCGTTATAGTT 58.967 33.333 0.00 0.00 0.00 2.24
2249 3331 7.544622 TGTCTGATCTTTGTTAGCGTTATAGT 58.455 34.615 0.00 0.00 0.00 2.12
2250 3332 7.987268 TGTCTGATCTTTGTTAGCGTTATAG 57.013 36.000 0.00 0.00 0.00 1.31
2251 3333 7.491372 CCTTGTCTGATCTTTGTTAGCGTTATA 59.509 37.037 0.00 0.00 0.00 0.98
2286 3368 0.618458 ACCAGCCAGCGGAATCTTTA 59.382 50.000 7.38 0.00 0.00 1.85
2367 3449 5.750067 CACATTTCTGGCAGCAAATAATACC 59.250 40.000 10.34 0.00 0.00 2.73
2422 3504 3.573229 AGAAGGCCCAGTGCTGCA 61.573 61.111 0.00 0.00 40.92 4.41
2424 3506 3.060615 GCAGAAGGCCCAGTGCTG 61.061 66.667 12.45 4.00 40.92 4.41
2425 3507 4.711949 CGCAGAAGGCCCAGTGCT 62.712 66.667 16.40 0.00 40.31 4.40
2538 3620 7.502120 TCATTGAAAGAGTGAAAAGAAGGAG 57.498 36.000 0.00 0.00 0.00 3.69
2551 3633 4.847365 TTCGCGATCTTCATTGAAAGAG 57.153 40.909 10.88 0.00 38.60 2.85
2557 3639 5.997732 AAAACATTTCGCGATCTTCATTG 57.002 34.783 10.88 3.77 0.00 2.82
2562 3644 4.854399 TGTCAAAAACATTTCGCGATCTT 58.146 34.783 10.88 0.00 31.20 2.40
2566 3648 3.728221 CACATGTCAAAAACATTTCGCGA 59.272 39.130 3.71 3.71 46.73 5.87
2567 3649 3.121396 CCACATGTCAAAAACATTTCGCG 60.121 43.478 0.00 0.00 46.73 5.87
2610 3692 1.272781 CTCGCCGAGTTTCAGCTTAG 58.727 55.000 5.82 0.00 0.00 2.18
2611 3693 0.736325 GCTCGCCGAGTTTCAGCTTA 60.736 55.000 16.50 0.00 31.39 3.09
2612 3694 2.029844 GCTCGCCGAGTTTCAGCTT 61.030 57.895 16.50 0.00 31.39 3.74
2613 3695 2.433318 GCTCGCCGAGTTTCAGCT 60.433 61.111 16.50 0.00 31.39 4.24
2614 3696 3.491652 GGCTCGCCGAGTTTCAGC 61.492 66.667 16.50 0.04 31.39 4.26
2615 3697 2.815647 GGGCTCGCCGAGTTTCAG 60.816 66.667 16.50 0.00 36.85 3.02
2616 3698 4.388499 GGGGCTCGCCGAGTTTCA 62.388 66.667 16.50 0.00 36.85 2.69
2617 3699 2.234913 TAAGGGGCTCGCCGAGTTTC 62.235 60.000 16.50 5.90 36.85 2.78
2618 3700 1.623542 ATAAGGGGCTCGCCGAGTTT 61.624 55.000 16.50 8.03 36.85 2.66
2619 3701 2.029307 GATAAGGGGCTCGCCGAGTT 62.029 60.000 16.50 4.46 36.85 3.01
2620 3702 2.444140 ATAAGGGGCTCGCCGAGT 60.444 61.111 16.50 0.00 36.85 4.18
2621 3703 2.340443 GATAAGGGGCTCGCCGAG 59.660 66.667 10.36 10.36 36.85 4.63
2622 3704 2.443203 TGATAAGGGGCTCGCCGA 60.443 61.111 1.24 0.00 36.85 5.54
2623 3705 2.029666 CTGATAAGGGGCTCGCCG 59.970 66.667 1.24 0.00 36.85 6.46
2624 3706 0.815615 CAACTGATAAGGGGCTCGCC 60.816 60.000 0.00 0.00 0.00 5.54
2625 3707 0.107654 ACAACTGATAAGGGGCTCGC 60.108 55.000 0.00 0.00 0.00 5.03
2626 3708 2.403252 AACAACTGATAAGGGGCTCG 57.597 50.000 0.00 0.00 0.00 5.03
2627 3709 2.164422 GCAAACAACTGATAAGGGGCTC 59.836 50.000 0.00 0.00 0.00 4.70
2628 3710 2.171003 GCAAACAACTGATAAGGGGCT 58.829 47.619 0.00 0.00 0.00 5.19
2629 3711 1.892474 TGCAAACAACTGATAAGGGGC 59.108 47.619 0.00 0.00 0.00 5.80
2643 3725 5.284079 ACTGATGAAACATCTGTTGCAAAC 58.716 37.500 7.79 6.32 45.87 2.93
2644 3726 5.067544 TGACTGATGAAACATCTGTTGCAAA 59.932 36.000 19.40 0.00 45.87 3.68
2645 3727 4.579753 TGACTGATGAAACATCTGTTGCAA 59.420 37.500 19.40 0.00 45.87 4.08
2646 3728 4.136051 TGACTGATGAAACATCTGTTGCA 58.864 39.130 19.40 6.21 46.71 4.08
2647 3729 4.754372 TGACTGATGAAACATCTGTTGC 57.246 40.909 19.40 11.76 38.44 4.17
2650 3732 9.671279 TGTTTATATGACTGATGAAACATCTGT 57.329 29.630 18.80 18.80 33.21 3.41
2651 3733 9.926751 GTGTTTATATGACTGATGAAACATCTG 57.073 33.333 13.99 13.99 38.59 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.