Multiple sequence alignment - TraesCS3A01G168900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G168900 chr3A 100.000 5508 0 0 1 5508 176931096 176936603 0.000000e+00 10172.0
1 TraesCS3A01G168900 chr3A 88.746 311 32 3 1829 2136 176932576 176932886 1.450000e-100 377.0
2 TraesCS3A01G168900 chr3A 88.746 311 32 3 1481 1791 176932924 176933231 1.450000e-100 377.0
3 TraesCS3A01G168900 chr3D 89.290 3744 215 75 1831 5443 153172166 153168478 0.000000e+00 4521.0
4 TraesCS3A01G168900 chr3D 89.397 1160 61 33 667 1799 153172975 153171851 0.000000e+00 1404.0
5 TraesCS3A01G168900 chr3B 89.213 2364 161 39 1835 4129 224487441 224485103 0.000000e+00 2867.0
6 TraesCS3A01G168900 chr3B 93.858 749 28 6 4175 4912 224485098 224484357 0.000000e+00 1112.0
7 TraesCS3A01G168900 chr3B 89.538 736 61 11 514 1237 224488394 224487663 0.000000e+00 918.0
8 TraesCS3A01G168900 chr3B 91.682 541 37 7 1264 1799 224487667 224487130 0.000000e+00 743.0
9 TraesCS3A01G168900 chr3B 86.513 519 60 7 3 516 224502629 224502116 3.730000e-156 562.0
10 TraesCS3A01G168900 chr3B 86.667 480 26 15 5040 5508 224483958 224483506 1.070000e-136 497.0
11 TraesCS3A01G168900 chr3B 82.463 268 42 5 216 480 133389755 133389490 4.290000e-56 230.0
12 TraesCS3A01G168900 chr3B 78.333 120 14 5 4926 5041 224484236 224484125 3.560000e-07 67.6
13 TraesCS3A01G168900 chr6D 80.705 482 70 12 4 481 9342430 9341968 2.440000e-93 353.0
14 TraesCS3A01G168900 chr6B 80.294 477 73 12 5 479 17276633 17276176 1.900000e-89 340.0
15 TraesCS3A01G168900 chr6B 78.858 473 79 12 4 473 17309924 17309470 3.230000e-77 300.0
16 TraesCS3A01G168900 chr6B 78.234 487 86 10 4 488 17290089 17289621 1.500000e-75 294.0
17 TraesCS3A01G168900 chr6B 78.481 474 81 13 4 474 17274703 17274248 1.940000e-74 291.0
18 TraesCS3A01G168900 chr6B 78.224 473 82 10 4 473 17295170 17294716 3.250000e-72 283.0
19 TraesCS3A01G168900 chr6B 78.013 473 78 15 4 471 17329512 17329061 1.950000e-69 274.0
20 TraesCS3A01G168900 chr5B 80.929 409 68 7 3 402 571630992 571630585 1.150000e-81 315.0
21 TraesCS3A01G168900 chr4B 77.885 208 34 7 267 473 44813341 44813537 9.690000e-23 119.0
22 TraesCS3A01G168900 chr4B 77.885 208 33 8 267 473 44591061 44591256 3.490000e-22 117.0
23 TraesCS3A01G168900 chr4A 79.032 124 22 4 503 623 37019327 37019449 1.270000e-11 82.4
24 TraesCS3A01G168900 chr7B 77.049 122 26 2 503 623 79054865 79054985 9.900000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G168900 chr3A 176931096 176936603 5507 False 10172.0 10172 100.000000 1 5508 1 chr3A.!!$F1 5507
1 TraesCS3A01G168900 chr3A 176932576 176933231 655 False 377.0 377 88.746000 1481 2136 2 chr3A.!!$F2 655
2 TraesCS3A01G168900 chr3D 153168478 153172975 4497 True 2962.5 4521 89.343500 667 5443 2 chr3D.!!$R1 4776
3 TraesCS3A01G168900 chr3B 224483506 224488394 4888 True 1034.1 2867 88.215167 514 5508 6 chr3B.!!$R3 4994
4 TraesCS3A01G168900 chr3B 224502116 224502629 513 True 562.0 562 86.513000 3 516 1 chr3B.!!$R2 513
5 TraesCS3A01G168900 chr6B 17274248 17276633 2385 True 315.5 340 79.387500 4 479 2 chr6B.!!$R5 475

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 0.382515 AGCAGACTAACCGATCGAGC 59.617 55.000 18.66 7.11 0.00 5.03 F
1888 2276 0.039708 GGTCAGCTGAGCAAACAAGC 60.040 55.000 34.86 13.09 41.81 4.01 F
1939 2327 0.034670 GCAGAGCAAGAACAGGGGAT 60.035 55.000 0.00 0.00 0.00 3.85 F
2011 2399 0.316937 CGCTTTGTGTTGTCATGCGT 60.317 50.000 0.00 0.00 36.62 5.24 F
2646 3093 0.669318 CTTTCGTACTGGCCTTCGCA 60.669 55.000 3.32 0.00 36.38 5.10 F
2651 3098 1.470979 CGTACTGGCCTTCGCAGTTAT 60.471 52.381 3.32 0.00 36.38 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1920 2308 0.034670 ATCCCCTGTTCTTGCTCTGC 60.035 55.000 0.0 0.0 0.00 4.26 R
3685 4822 0.462047 AGTCAAAATAGGCCCGCTCG 60.462 55.000 0.0 0.0 0.00 5.03 R
3765 4902 3.128589 GGAACTCAAGCACTGAACAAACA 59.871 43.478 0.0 0.0 32.17 2.83 R
3970 5115 0.035881 TGCAGGCCTTCAGAACTCAG 59.964 55.000 0.0 0.0 0.00 3.35 R
4292 5672 2.207501 TAGACGACGAGGCCCCTTCT 62.208 60.000 0.0 0.0 0.00 2.85 R
4531 6234 4.040952 ACTCAGCAAGTCAGAATGGTAAGT 59.959 41.667 0.0 0.0 36.16 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 0.382515 AGCAGACTAACCGATCGAGC 59.617 55.000 18.66 7.11 0.00 5.03
123 124 1.453015 GCGTCAACATGGGGGCATA 60.453 57.895 0.00 0.00 0.00 3.14
135 136 2.298610 GGGGGCATAGAGCTTTTGTAC 58.701 52.381 0.00 0.00 44.79 2.90
190 192 3.959975 GGCGGCGCTTTGTTGTCA 61.960 61.111 32.30 0.00 0.00 3.58
231 233 4.263727 ACAAGTGGTGGCATAGTTCCAATA 60.264 41.667 0.00 0.00 35.01 1.90
242 244 7.670364 GGCATAGTTCCAATATGGCTTATTTT 58.330 34.615 9.71 0.00 46.90 1.82
261 263 2.124403 GGCATGCTGGTCCTCCTG 60.124 66.667 18.92 0.00 36.04 3.86
265 267 2.228711 ATGCTGGTCCTCCTGGATG 58.771 57.895 0.00 0.00 45.29 3.51
282 284 3.051803 TGGATGGAGGATAGTGACTTCCT 60.052 47.826 13.65 13.65 45.12 3.36
286 288 2.359531 GGAGGATAGTGACTTCCTGACG 59.640 54.545 17.17 0.00 42.48 4.35
307 309 3.424829 CGTCTTTAATCTGTGCGCACAAT 60.425 43.478 39.43 30.41 41.33 2.71
313 315 0.534877 TCTGTGCGCACAATCAAGGT 60.535 50.000 39.43 0.00 41.33 3.50
318 320 1.052287 GCGCACAATCAAGGTTTTCG 58.948 50.000 0.30 0.00 0.00 3.46
324 326 2.693074 ACAATCAAGGTTTTCGTTGGCT 59.307 40.909 0.00 0.00 43.31 4.75
343 348 2.125106 CGGTAGGGAGCAGCAACC 60.125 66.667 0.00 0.00 0.00 3.77
393 398 1.148498 GGCTAGATTGGTTCCCCGG 59.852 63.158 0.00 0.00 0.00 5.73
406 411 1.076339 CCCCGGGGTGCAATTGTAT 60.076 57.895 33.25 0.00 0.00 2.29
407 412 0.686112 CCCCGGGGTGCAATTGTATT 60.686 55.000 33.25 0.00 0.00 1.89
451 456 6.470557 TGCGTTGTACCACTACTTATTTTC 57.529 37.500 0.00 0.00 0.00 2.29
487 492 3.753294 TCTTCTCGCAAAAAGAGACCT 57.247 42.857 0.00 0.00 43.61 3.85
509 514 5.447279 CCTTGATAAGTGTTATTCGTGTGGC 60.447 44.000 0.00 0.00 0.00 5.01
511 516 4.390603 TGATAAGTGTTATTCGTGTGGCAC 59.609 41.667 11.55 11.55 0.00 5.01
527 532 1.473080 GGCACAAACACATGGCAACTT 60.473 47.619 0.00 0.00 40.91 2.66
532 537 2.774439 AACACATGGCAACTTCGAAC 57.226 45.000 0.00 0.00 37.61 3.95
541 546 3.810941 TGGCAACTTCGAACGTTTTCTAT 59.189 39.130 0.46 0.00 37.61 1.98
544 549 5.390567 GGCAACTTCGAACGTTTTCTATGAT 60.391 40.000 0.46 0.00 0.00 2.45
562 567 9.546428 TTCTATGATAAATTTGATGAAGCGAGA 57.454 29.630 0.00 0.00 0.00 4.04
566 571 8.212317 TGATAAATTTGATGAAGCGAGAATGA 57.788 30.769 0.00 0.00 0.00 2.57
571 576 5.641777 TTGATGAAGCGAGAATGATAACG 57.358 39.130 0.00 0.00 0.00 3.18
584 589 7.839837 CGAGAATGATAACGTTAGTTGTTAAGC 59.160 37.037 14.25 0.00 41.35 3.09
586 591 8.656849 AGAATGATAACGTTAGTTGTTAAGCAG 58.343 33.333 14.25 0.00 41.35 4.24
591 597 3.818773 ACGTTAGTTGTTAAGCAGGCAAT 59.181 39.130 0.00 0.00 0.00 3.56
601 607 5.006165 TGTTAAGCAGGCAATTTTGTTTTCG 59.994 36.000 0.00 0.00 0.00 3.46
602 608 3.451141 AGCAGGCAATTTTGTTTTCGA 57.549 38.095 0.00 0.00 0.00 3.71
604 610 3.555547 AGCAGGCAATTTTGTTTTCGAAC 59.444 39.130 0.00 0.00 0.00 3.95
683 693 3.114616 CTGGAGTGCTTCGTGCCG 61.115 66.667 1.30 0.00 42.00 5.69
702 712 1.393196 CGCATGTGTGACGCTTATCAA 59.607 47.619 0.00 0.00 0.00 2.57
752 769 7.963465 GCGGAGAAGTAATAAGGAAAGAAAAAG 59.037 37.037 0.00 0.00 0.00 2.27
927 961 2.497273 TGCATCTCAGAATTCGAGACCA 59.503 45.455 23.15 20.22 42.12 4.02
1094 1133 1.154150 CGTCTCCGTGACCGTAACC 60.154 63.158 1.10 0.00 42.49 2.85
1162 1201 1.952102 TACTTAGCTTGCCGTCGGGG 61.952 60.000 14.38 0.00 39.58 5.73
1184 1223 3.414700 GTCGTTGGCCTGCTGTCG 61.415 66.667 3.32 0.00 0.00 4.35
1222 1261 3.288290 CCGTCGCTAGATCCGGCT 61.288 66.667 0.00 0.00 30.92 5.52
1238 1277 2.556287 CTGGTTTCTCGGCGTTGC 59.444 61.111 6.85 0.00 0.00 4.17
1297 1337 1.415374 TTTGACTAGTCAGCGTTCGC 58.585 50.000 23.97 9.24 41.13 4.70
1320 1360 2.029020 GGCTGGTTTGTTTTCTGATCCC 60.029 50.000 0.00 0.00 0.00 3.85
1427 1467 0.829333 AGAGATCCGCACATGCTTCT 59.171 50.000 1.82 1.83 39.32 2.85
1428 1468 1.209019 AGAGATCCGCACATGCTTCTT 59.791 47.619 1.82 0.00 39.32 2.52
1436 1476 1.130749 GCACATGCTTCTTGCTCAGAG 59.869 52.381 0.00 0.00 43.37 3.35
1457 1497 7.283127 TCAGAGTTGGGCATAATTCAAGAATAC 59.717 37.037 0.00 0.00 0.00 1.89
1458 1498 7.284034 CAGAGTTGGGCATAATTCAAGAATACT 59.716 37.037 0.00 0.00 0.00 2.12
1728 2116 4.781934 AGGATAGTGTCAATTTACCTGGC 58.218 43.478 0.00 0.00 0.00 4.85
1729 2117 4.227300 AGGATAGTGTCAATTTACCTGGCA 59.773 41.667 0.00 0.00 0.00 4.92
1730 2118 5.103940 AGGATAGTGTCAATTTACCTGGCAT 60.104 40.000 0.00 0.00 29.72 4.40
1731 2119 5.594317 GGATAGTGTCAATTTACCTGGCATT 59.406 40.000 0.00 0.00 29.72 3.56
1732 2120 6.238759 GGATAGTGTCAATTTACCTGGCATTC 60.239 42.308 0.00 0.00 29.72 2.67
1733 2121 4.406456 AGTGTCAATTTACCTGGCATTCA 58.594 39.130 0.00 0.00 29.72 2.57
1734 2122 4.460382 AGTGTCAATTTACCTGGCATTCAG 59.540 41.667 0.00 0.00 43.00 3.02
1742 2130 3.963733 CTGGCATTCAGGGACAAGA 57.036 52.632 0.00 0.00 39.76 3.02
1743 2131 2.431954 CTGGCATTCAGGGACAAGAT 57.568 50.000 0.00 0.00 39.76 2.40
1744 2132 3.565764 CTGGCATTCAGGGACAAGATA 57.434 47.619 0.00 0.00 39.76 1.98
1745 2133 3.474600 CTGGCATTCAGGGACAAGATAG 58.525 50.000 0.00 0.00 39.76 2.08
1746 2134 2.846206 TGGCATTCAGGGACAAGATAGT 59.154 45.455 0.00 0.00 0.00 2.12
1747 2135 3.209410 GGCATTCAGGGACAAGATAGTG 58.791 50.000 0.00 0.00 0.00 2.74
1748 2136 3.370953 GGCATTCAGGGACAAGATAGTGT 60.371 47.826 0.00 0.00 0.00 3.55
1749 2137 4.265073 GCATTCAGGGACAAGATAGTGTT 58.735 43.478 0.00 0.00 0.00 3.32
1750 2138 4.333926 GCATTCAGGGACAAGATAGTGTTC 59.666 45.833 0.00 0.00 0.00 3.18
1751 2139 5.491070 CATTCAGGGACAAGATAGTGTTCA 58.509 41.667 0.00 0.00 0.00 3.18
1752 2140 4.808414 TCAGGGACAAGATAGTGTTCAG 57.192 45.455 0.00 0.00 0.00 3.02
1753 2141 4.416516 TCAGGGACAAGATAGTGTTCAGA 58.583 43.478 0.00 0.00 0.00 3.27
1754 2142 5.026121 TCAGGGACAAGATAGTGTTCAGAT 58.974 41.667 0.00 0.00 0.00 2.90
1755 2143 5.485353 TCAGGGACAAGATAGTGTTCAGATT 59.515 40.000 0.00 0.00 0.00 2.40
1756 2144 6.013379 TCAGGGACAAGATAGTGTTCAGATTT 60.013 38.462 0.00 0.00 0.00 2.17
1757 2145 6.093219 CAGGGACAAGATAGTGTTCAGATTTG 59.907 42.308 0.00 0.00 0.00 2.32
1758 2146 5.940470 GGGACAAGATAGTGTTCAGATTTGT 59.060 40.000 0.00 0.00 0.00 2.83
1759 2147 7.038302 AGGGACAAGATAGTGTTCAGATTTGTA 60.038 37.037 0.00 0.00 0.00 2.41
1760 2148 7.064728 GGGACAAGATAGTGTTCAGATTTGTAC 59.935 40.741 0.00 0.00 0.00 2.90
1761 2149 7.602644 GGACAAGATAGTGTTCAGATTTGTACA 59.397 37.037 0.00 0.00 32.96 2.90
1762 2150 8.539770 ACAAGATAGTGTTCAGATTTGTACAG 57.460 34.615 0.00 0.00 35.61 2.74
1763 2151 7.118390 ACAAGATAGTGTTCAGATTTGTACAGC 59.882 37.037 0.00 0.00 35.61 4.40
1764 2152 6.701340 AGATAGTGTTCAGATTTGTACAGCA 58.299 36.000 0.00 0.00 35.61 4.41
1765 2153 7.161404 AGATAGTGTTCAGATTTGTACAGCAA 58.839 34.615 0.00 0.00 35.61 3.91
1766 2154 5.679734 AGTGTTCAGATTTGTACAGCAAG 57.320 39.130 0.00 0.00 35.61 4.01
1767 2155 4.023707 AGTGTTCAGATTTGTACAGCAAGC 60.024 41.667 0.00 0.00 35.61 4.01
1768 2156 3.882288 TGTTCAGATTTGTACAGCAAGCA 59.118 39.130 0.00 0.00 38.47 3.91
1769 2157 4.337836 TGTTCAGATTTGTACAGCAAGCAA 59.662 37.500 0.00 0.00 38.47 3.91
1770 2158 5.163571 TGTTCAGATTTGTACAGCAAGCAAA 60.164 36.000 0.00 0.00 38.47 3.68
1771 2159 5.112220 TCAGATTTGTACAGCAAGCAAAG 57.888 39.130 0.00 0.00 38.47 2.77
1772 2160 4.821260 TCAGATTTGTACAGCAAGCAAAGA 59.179 37.500 0.00 0.00 38.47 2.52
1773 2161 5.299028 TCAGATTTGTACAGCAAGCAAAGAA 59.701 36.000 0.00 0.00 38.47 2.52
1774 2162 5.978919 CAGATTTGTACAGCAAGCAAAGAAA 59.021 36.000 0.00 0.00 38.47 2.52
1775 2163 5.979517 AGATTTGTACAGCAAGCAAAGAAAC 59.020 36.000 0.00 0.00 38.47 2.78
1776 2164 3.708563 TGTACAGCAAGCAAAGAAACC 57.291 42.857 0.00 0.00 0.00 3.27
1777 2165 3.020274 TGTACAGCAAGCAAAGAAACCA 58.980 40.909 0.00 0.00 0.00 3.67
1778 2166 2.584492 ACAGCAAGCAAAGAAACCAC 57.416 45.000 0.00 0.00 0.00 4.16
1779 2167 1.824230 ACAGCAAGCAAAGAAACCACA 59.176 42.857 0.00 0.00 0.00 4.17
1780 2168 2.195922 CAGCAAGCAAAGAAACCACAC 58.804 47.619 0.00 0.00 0.00 3.82
1781 2169 1.136891 AGCAAGCAAAGAAACCACACC 59.863 47.619 0.00 0.00 0.00 4.16
1782 2170 1.134848 GCAAGCAAAGAAACCACACCA 60.135 47.619 0.00 0.00 0.00 4.17
1783 2171 2.813061 CAAGCAAAGAAACCACACCAG 58.187 47.619 0.00 0.00 0.00 4.00
1784 2172 2.143876 AGCAAAGAAACCACACCAGT 57.856 45.000 0.00 0.00 0.00 4.00
1785 2173 3.290948 AGCAAAGAAACCACACCAGTA 57.709 42.857 0.00 0.00 0.00 2.74
1786 2174 3.214328 AGCAAAGAAACCACACCAGTAG 58.786 45.455 0.00 0.00 0.00 2.57
1787 2175 2.949644 GCAAAGAAACCACACCAGTAGT 59.050 45.455 0.00 0.00 0.00 2.73
1788 2176 4.131596 GCAAAGAAACCACACCAGTAGTA 58.868 43.478 0.00 0.00 0.00 1.82
1789 2177 4.213482 GCAAAGAAACCACACCAGTAGTAG 59.787 45.833 0.00 0.00 0.00 2.57
1790 2178 5.365619 CAAAGAAACCACACCAGTAGTAGT 58.634 41.667 0.00 0.00 0.00 2.73
1791 2179 4.868314 AGAAACCACACCAGTAGTAGTC 57.132 45.455 0.00 0.00 0.00 2.59
1792 2180 4.220724 AGAAACCACACCAGTAGTAGTCA 58.779 43.478 0.00 0.00 0.00 3.41
1793 2181 4.038883 AGAAACCACACCAGTAGTAGTCAC 59.961 45.833 0.00 0.00 0.00 3.67
1794 2182 2.245582 ACCACACCAGTAGTAGTCACC 58.754 52.381 0.00 0.00 0.00 4.02
1795 2183 2.244695 CCACACCAGTAGTAGTCACCA 58.755 52.381 0.00 0.00 0.00 4.17
1796 2184 2.231478 CCACACCAGTAGTAGTCACCAG 59.769 54.545 0.00 0.00 0.00 4.00
1797 2185 2.891580 CACACCAGTAGTAGTCACCAGT 59.108 50.000 0.00 0.00 0.00 4.00
1798 2186 3.057456 CACACCAGTAGTAGTCACCAGTC 60.057 52.174 0.00 0.00 0.00 3.51
1799 2187 2.492484 CACCAGTAGTAGTCACCAGTCC 59.508 54.545 0.00 0.00 0.00 3.85
1800 2188 2.379226 ACCAGTAGTAGTCACCAGTCCT 59.621 50.000 0.00 0.00 0.00 3.85
1801 2189 3.018149 CCAGTAGTAGTCACCAGTCCTC 58.982 54.545 0.00 0.00 0.00 3.71
1802 2190 3.561528 CCAGTAGTAGTCACCAGTCCTCA 60.562 52.174 0.00 0.00 0.00 3.86
1803 2191 4.274147 CAGTAGTAGTCACCAGTCCTCAT 58.726 47.826 0.00 0.00 0.00 2.90
1804 2192 4.336993 CAGTAGTAGTCACCAGTCCTCATC 59.663 50.000 0.00 0.00 0.00 2.92
1805 2193 2.741145 AGTAGTCACCAGTCCTCATCC 58.259 52.381 0.00 0.00 0.00 3.51
1806 2194 2.313342 AGTAGTCACCAGTCCTCATCCT 59.687 50.000 0.00 0.00 0.00 3.24
1807 2195 1.566211 AGTCACCAGTCCTCATCCTG 58.434 55.000 0.00 0.00 0.00 3.86
1808 2196 1.203237 AGTCACCAGTCCTCATCCTGT 60.203 52.381 0.00 0.00 0.00 4.00
1809 2197 1.066573 GTCACCAGTCCTCATCCTGTG 60.067 57.143 0.00 0.00 0.00 3.66
1810 2198 0.251354 CACCAGTCCTCATCCTGTGG 59.749 60.000 0.00 0.00 32.56 4.17
1811 2199 0.178891 ACCAGTCCTCATCCTGTGGT 60.179 55.000 0.00 0.00 33.07 4.16
1812 2200 0.251354 CCAGTCCTCATCCTGTGGTG 59.749 60.000 0.00 0.00 33.07 4.17
1813 2201 0.392193 CAGTCCTCATCCTGTGGTGC 60.392 60.000 0.00 0.00 33.07 5.01
1814 2202 1.078143 GTCCTCATCCTGTGGTGCC 60.078 63.158 0.00 0.00 33.07 5.01
1815 2203 2.124983 CCTCATCCTGTGGTGCCG 60.125 66.667 0.00 0.00 0.00 5.69
1816 2204 2.659063 CCTCATCCTGTGGTGCCGA 61.659 63.158 0.00 0.00 0.00 5.54
1817 2205 1.448540 CTCATCCTGTGGTGCCGAC 60.449 63.158 0.00 0.00 0.00 4.79
1818 2206 2.815211 CATCCTGTGGTGCCGACG 60.815 66.667 0.00 0.00 0.00 5.12
1819 2207 4.082523 ATCCTGTGGTGCCGACGG 62.083 66.667 10.29 10.29 0.00 4.79
1821 2209 4.619227 CCTGTGGTGCCGACGGTT 62.619 66.667 16.73 0.00 0.00 4.44
1822 2210 2.590575 CTGTGGTGCCGACGGTTT 60.591 61.111 16.73 0.00 0.00 3.27
1823 2211 2.589442 TGTGGTGCCGACGGTTTC 60.589 61.111 16.73 6.18 0.00 2.78
1824 2212 2.280592 GTGGTGCCGACGGTTTCT 60.281 61.111 16.73 0.00 0.00 2.52
1825 2213 1.890510 GTGGTGCCGACGGTTTCTT 60.891 57.895 16.73 0.00 0.00 2.52
1826 2214 0.600782 GTGGTGCCGACGGTTTCTTA 60.601 55.000 16.73 0.00 0.00 2.10
1827 2215 0.600782 TGGTGCCGACGGTTTCTTAC 60.601 55.000 16.73 5.51 0.00 2.34
1828 2216 0.320160 GGTGCCGACGGTTTCTTACT 60.320 55.000 16.73 0.00 0.00 2.24
1829 2217 1.067635 GGTGCCGACGGTTTCTTACTA 60.068 52.381 16.73 0.00 0.00 1.82
1830 2218 2.417787 GGTGCCGACGGTTTCTTACTAT 60.418 50.000 16.73 0.00 0.00 2.12
1831 2219 2.601763 GTGCCGACGGTTTCTTACTATG 59.398 50.000 16.73 0.00 0.00 2.23
1832 2220 2.231964 TGCCGACGGTTTCTTACTATGT 59.768 45.455 16.73 0.00 0.00 2.29
1833 2221 2.856557 GCCGACGGTTTCTTACTATGTC 59.143 50.000 16.73 0.00 0.00 3.06
1834 2222 3.428589 GCCGACGGTTTCTTACTATGTCT 60.429 47.826 16.73 0.00 0.00 3.41
1835 2223 4.103357 CCGACGGTTTCTTACTATGTCTG 58.897 47.826 5.48 0.00 0.00 3.51
1836 2224 4.380233 CCGACGGTTTCTTACTATGTCTGT 60.380 45.833 5.48 0.00 0.00 3.41
1837 2225 5.159209 CGACGGTTTCTTACTATGTCTGTT 58.841 41.667 0.00 0.00 0.00 3.16
1838 2226 5.632347 CGACGGTTTCTTACTATGTCTGTTT 59.368 40.000 0.00 0.00 0.00 2.83
1839 2227 6.803320 CGACGGTTTCTTACTATGTCTGTTTA 59.197 38.462 0.00 0.00 0.00 2.01
1840 2228 7.326789 CGACGGTTTCTTACTATGTCTGTTTAA 59.673 37.037 0.00 0.00 0.00 1.52
1841 2229 8.530269 ACGGTTTCTTACTATGTCTGTTTAAG 57.470 34.615 0.00 0.00 0.00 1.85
1842 2230 8.362639 ACGGTTTCTTACTATGTCTGTTTAAGA 58.637 33.333 0.00 0.00 0.00 2.10
1843 2231 9.367444 CGGTTTCTTACTATGTCTGTTTAAGAT 57.633 33.333 0.00 0.00 37.23 2.40
1852 2240 9.553064 ACTATGTCTGTTTAAGATGGATGATTC 57.447 33.333 0.00 0.00 37.23 2.52
1853 2241 9.551734 CTATGTCTGTTTAAGATGGATGATTCA 57.448 33.333 0.00 0.00 37.23 2.57
1854 2242 8.812513 ATGTCTGTTTAAGATGGATGATTCAA 57.187 30.769 0.00 0.00 37.23 2.69
1855 2243 8.044060 TGTCTGTTTAAGATGGATGATTCAAC 57.956 34.615 0.00 0.00 37.23 3.18
1856 2244 7.665145 TGTCTGTTTAAGATGGATGATTCAACA 59.335 33.333 0.00 0.00 37.23 3.33
1857 2245 8.514594 GTCTGTTTAAGATGGATGATTCAACAA 58.485 33.333 0.00 0.00 37.23 2.83
1858 2246 8.514594 TCTGTTTAAGATGGATGATTCAACAAC 58.485 33.333 0.00 0.00 0.00 3.32
1859 2247 7.601856 TGTTTAAGATGGATGATTCAACAACC 58.398 34.615 0.00 0.00 34.10 3.77
1860 2248 7.232330 TGTTTAAGATGGATGATTCAACAACCA 59.768 33.333 0.00 0.00 44.38 3.67
1861 2249 5.909621 AAGATGGATGATTCAACAACCAG 57.090 39.130 0.00 0.00 43.73 4.00
1862 2250 3.698040 AGATGGATGATTCAACAACCAGC 59.302 43.478 0.00 0.00 45.08 4.85
1863 2251 3.159213 TGGATGATTCAACAACCAGCT 57.841 42.857 0.00 0.00 37.70 4.24
1864 2252 2.821378 TGGATGATTCAACAACCAGCTG 59.179 45.455 6.78 6.78 37.70 4.24
1865 2253 2.165030 GGATGATTCAACAACCAGCTGG 59.835 50.000 31.60 31.60 42.17 4.85
1884 2272 2.558313 GCGGTCAGCTGAGCAAAC 59.442 61.111 37.01 24.99 42.28 2.93
1885 2273 2.253758 GCGGTCAGCTGAGCAAACA 61.254 57.895 37.01 5.81 42.28 2.83
1886 2274 1.785041 GCGGTCAGCTGAGCAAACAA 61.785 55.000 37.01 5.04 42.28 2.83
1887 2275 0.236711 CGGTCAGCTGAGCAAACAAG 59.763 55.000 37.01 20.75 42.28 3.16
1888 2276 0.039708 GGTCAGCTGAGCAAACAAGC 60.040 55.000 34.86 13.09 41.81 4.01
1889 2277 0.664761 GTCAGCTGAGCAAACAAGCA 59.335 50.000 18.89 0.00 36.85 3.91
1890 2278 1.066002 GTCAGCTGAGCAAACAAGCAA 59.934 47.619 18.89 0.00 36.85 3.91
1891 2279 1.750206 TCAGCTGAGCAAACAAGCAAA 59.250 42.857 13.74 0.00 36.85 3.68
1892 2280 2.363038 TCAGCTGAGCAAACAAGCAAAT 59.637 40.909 13.74 0.00 36.85 2.32
1893 2281 2.475111 CAGCTGAGCAAACAAGCAAATG 59.525 45.455 8.42 0.00 36.85 2.32
1894 2282 2.363038 AGCTGAGCAAACAAGCAAATGA 59.637 40.909 7.39 0.00 36.85 2.57
1895 2283 3.125316 GCTGAGCAAACAAGCAAATGAA 58.875 40.909 0.00 0.00 36.85 2.57
1896 2284 3.183775 GCTGAGCAAACAAGCAAATGAAG 59.816 43.478 0.00 0.00 36.85 3.02
1897 2285 4.365723 CTGAGCAAACAAGCAAATGAAGT 58.634 39.130 0.00 0.00 36.85 3.01
1898 2286 4.114073 TGAGCAAACAAGCAAATGAAGTG 58.886 39.130 0.00 0.00 36.85 3.16
1899 2287 3.460103 AGCAAACAAGCAAATGAAGTGG 58.540 40.909 0.00 0.00 36.85 4.00
1900 2288 2.032636 GCAAACAAGCAAATGAAGTGGC 60.033 45.455 0.00 0.00 0.00 5.01
1901 2289 3.196463 CAAACAAGCAAATGAAGTGGCA 58.804 40.909 0.00 0.00 0.00 4.92
1902 2290 2.806608 ACAAGCAAATGAAGTGGCAG 57.193 45.000 0.00 0.00 0.00 4.85
1903 2291 2.309613 ACAAGCAAATGAAGTGGCAGA 58.690 42.857 0.00 0.00 0.00 4.26
1904 2292 2.295349 ACAAGCAAATGAAGTGGCAGAG 59.705 45.455 0.00 0.00 0.00 3.35
1905 2293 2.555325 CAAGCAAATGAAGTGGCAGAGA 59.445 45.455 0.00 0.00 0.00 3.10
1906 2294 2.157738 AGCAAATGAAGTGGCAGAGAC 58.842 47.619 0.00 0.00 0.00 3.36
1907 2295 1.200948 GCAAATGAAGTGGCAGAGACC 59.799 52.381 0.00 0.00 0.00 3.85
1908 2296 2.507484 CAAATGAAGTGGCAGAGACCA 58.493 47.619 0.00 0.00 37.38 4.02
1909 2297 3.087031 CAAATGAAGTGGCAGAGACCAT 58.913 45.455 0.00 0.00 43.01 3.55
1910 2298 2.414994 ATGAAGTGGCAGAGACCATG 57.585 50.000 0.00 0.00 43.01 3.66
1911 2299 0.321919 TGAAGTGGCAGAGACCATGC 60.322 55.000 0.00 0.00 43.01 4.06
1912 2300 1.364626 GAAGTGGCAGAGACCATGCG 61.365 60.000 0.00 0.00 44.80 4.73
1913 2301 2.046892 GTGGCAGAGACCATGCGT 60.047 61.111 0.00 0.00 44.80 5.24
1914 2302 2.046988 TGGCAGAGACCATGCGTG 60.047 61.111 0.00 0.00 44.80 5.34
1915 2303 2.046892 GGCAGAGACCATGCGTGT 60.047 61.111 4.96 0.00 44.80 4.49
1916 2304 2.393768 GGCAGAGACCATGCGTGTG 61.394 63.158 4.96 0.00 44.80 3.82
1917 2305 1.669115 GCAGAGACCATGCGTGTGT 60.669 57.895 4.96 2.39 33.31 3.72
1918 2306 1.630244 GCAGAGACCATGCGTGTGTC 61.630 60.000 15.68 15.68 33.31 3.67
1919 2307 0.319813 CAGAGACCATGCGTGTGTCA 60.320 55.000 21.86 0.00 31.77 3.58
1920 2308 0.037882 AGAGACCATGCGTGTGTCAG 60.038 55.000 21.86 4.43 31.77 3.51
1921 2309 1.630244 GAGACCATGCGTGTGTCAGC 61.630 60.000 21.86 13.48 31.77 4.26
1926 2314 2.662857 TGCGTGTGTCAGCAGAGC 60.663 61.111 0.00 0.00 38.59 4.09
1927 2315 2.662857 GCGTGTGTCAGCAGAGCA 60.663 61.111 0.00 0.00 0.00 4.26
1928 2316 2.246739 GCGTGTGTCAGCAGAGCAA 61.247 57.895 0.00 0.00 0.00 3.91
1929 2317 1.858041 CGTGTGTCAGCAGAGCAAG 59.142 57.895 0.00 0.00 0.00 4.01
1930 2318 0.598419 CGTGTGTCAGCAGAGCAAGA 60.598 55.000 0.00 0.00 0.00 3.02
1931 2319 1.586422 GTGTGTCAGCAGAGCAAGAA 58.414 50.000 0.00 0.00 0.00 2.52
1932 2320 1.262683 GTGTGTCAGCAGAGCAAGAAC 59.737 52.381 0.00 0.00 0.00 3.01
1933 2321 1.134431 TGTGTCAGCAGAGCAAGAACA 60.134 47.619 0.00 0.00 0.00 3.18
1934 2322 1.530293 GTGTCAGCAGAGCAAGAACAG 59.470 52.381 0.00 0.00 0.00 3.16
1935 2323 1.155042 GTCAGCAGAGCAAGAACAGG 58.845 55.000 0.00 0.00 0.00 4.00
1936 2324 0.035881 TCAGCAGAGCAAGAACAGGG 59.964 55.000 0.00 0.00 0.00 4.45
1937 2325 0.959372 CAGCAGAGCAAGAACAGGGG 60.959 60.000 0.00 0.00 0.00 4.79
1938 2326 1.130054 AGCAGAGCAAGAACAGGGGA 61.130 55.000 0.00 0.00 0.00 4.81
1939 2327 0.034670 GCAGAGCAAGAACAGGGGAT 60.035 55.000 0.00 0.00 0.00 3.85
1940 2328 2.016096 GCAGAGCAAGAACAGGGGATC 61.016 57.143 0.00 0.00 0.00 3.36
1941 2329 1.280133 CAGAGCAAGAACAGGGGATCA 59.720 52.381 0.00 0.00 0.00 2.92
1942 2330 1.558756 AGAGCAAGAACAGGGGATCAG 59.441 52.381 0.00 0.00 0.00 2.90
1943 2331 1.556911 GAGCAAGAACAGGGGATCAGA 59.443 52.381 0.00 0.00 0.00 3.27
1944 2332 1.558756 AGCAAGAACAGGGGATCAGAG 59.441 52.381 0.00 0.00 0.00 3.35
1945 2333 2.016096 GCAAGAACAGGGGATCAGAGC 61.016 57.143 0.00 0.00 0.00 4.09
1946 2334 1.280133 CAAGAACAGGGGATCAGAGCA 59.720 52.381 0.00 0.00 0.00 4.26
1947 2335 1.890552 AGAACAGGGGATCAGAGCAT 58.109 50.000 0.00 0.00 0.00 3.79
1948 2336 2.203584 AGAACAGGGGATCAGAGCATT 58.796 47.619 0.00 0.00 0.00 3.56
1949 2337 2.172293 AGAACAGGGGATCAGAGCATTC 59.828 50.000 0.00 0.00 0.00 2.67
1950 2338 1.890552 ACAGGGGATCAGAGCATTCT 58.109 50.000 0.00 0.00 0.00 2.40
1962 2350 5.886715 CAGAGCATTCTGTTAGATTCTCG 57.113 43.478 0.00 0.00 44.74 4.04
1963 2351 5.586339 CAGAGCATTCTGTTAGATTCTCGA 58.414 41.667 0.00 0.00 44.74 4.04
1964 2352 6.215121 CAGAGCATTCTGTTAGATTCTCGAT 58.785 40.000 0.00 0.00 44.74 3.59
1965 2353 6.363088 CAGAGCATTCTGTTAGATTCTCGATC 59.637 42.308 0.00 0.00 44.74 3.69
1966 2354 6.040278 AGAGCATTCTGTTAGATTCTCGATCA 59.960 38.462 0.00 0.00 32.80 2.92
1967 2355 5.982516 AGCATTCTGTTAGATTCTCGATCAC 59.017 40.000 0.00 0.00 37.22 3.06
1968 2356 5.108065 GCATTCTGTTAGATTCTCGATCACG 60.108 44.000 0.00 0.00 37.22 4.35
1969 2357 4.553756 TCTGTTAGATTCTCGATCACGG 57.446 45.455 0.00 0.00 40.21 4.94
1970 2358 4.196971 TCTGTTAGATTCTCGATCACGGA 58.803 43.478 0.00 0.00 40.21 4.69
1971 2359 4.273724 TCTGTTAGATTCTCGATCACGGAG 59.726 45.833 0.00 0.00 40.21 4.63
1972 2360 3.315470 TGTTAGATTCTCGATCACGGAGG 59.685 47.826 0.00 0.00 40.21 4.30
1973 2361 2.350057 AGATTCTCGATCACGGAGGA 57.650 50.000 0.00 0.00 40.21 3.71
1974 2362 2.870175 AGATTCTCGATCACGGAGGAT 58.130 47.619 0.00 0.00 40.21 3.24
1975 2363 3.226777 AGATTCTCGATCACGGAGGATT 58.773 45.455 0.00 0.00 40.21 3.01
1976 2364 2.871182 TTCTCGATCACGGAGGATTG 57.129 50.000 0.00 0.00 40.21 2.67
1977 2365 1.763968 TCTCGATCACGGAGGATTGT 58.236 50.000 0.00 0.00 40.21 2.71
1978 2366 1.405463 TCTCGATCACGGAGGATTGTG 59.595 52.381 0.00 0.00 40.21 3.33
1979 2367 1.135139 CTCGATCACGGAGGATTGTGT 59.865 52.381 0.00 0.00 40.21 3.72
1980 2368 1.135112 TCGATCACGGAGGATTGTGTG 60.135 52.381 0.00 0.00 40.21 3.82
1981 2369 1.009829 GATCACGGAGGATTGTGTGC 58.990 55.000 0.00 0.00 37.38 4.57
1982 2370 0.615331 ATCACGGAGGATTGTGTGCT 59.385 50.000 0.00 0.00 37.38 4.40
1983 2371 0.396435 TCACGGAGGATTGTGTGCTT 59.604 50.000 0.00 0.00 37.38 3.91
1984 2372 1.202758 TCACGGAGGATTGTGTGCTTT 60.203 47.619 0.00 0.00 37.38 3.51
1985 2373 2.037902 TCACGGAGGATTGTGTGCTTTA 59.962 45.455 0.00 0.00 37.38 1.85
1986 2374 3.009723 CACGGAGGATTGTGTGCTTTAT 58.990 45.455 0.00 0.00 0.00 1.40
1987 2375 3.009723 ACGGAGGATTGTGTGCTTTATG 58.990 45.455 0.00 0.00 0.00 1.90
1988 2376 3.270027 CGGAGGATTGTGTGCTTTATGA 58.730 45.455 0.00 0.00 0.00 2.15
1989 2377 3.310774 CGGAGGATTGTGTGCTTTATGAG 59.689 47.826 0.00 0.00 0.00 2.90
1990 2378 4.517285 GGAGGATTGTGTGCTTTATGAGA 58.483 43.478 0.00 0.00 0.00 3.27
1991 2379 4.574013 GGAGGATTGTGTGCTTTATGAGAG 59.426 45.833 0.00 0.00 0.00 3.20
1992 2380 3.944015 AGGATTGTGTGCTTTATGAGAGC 59.056 43.478 0.00 0.00 40.53 4.09
1993 2381 3.242543 GGATTGTGTGCTTTATGAGAGCG 60.243 47.826 0.00 0.00 43.02 5.03
1998 2386 2.778659 GTGCTTTATGAGAGCGCTTTG 58.221 47.619 13.26 0.00 44.88 2.77
1999 2387 2.160417 GTGCTTTATGAGAGCGCTTTGT 59.840 45.455 13.26 0.00 44.88 2.83
2000 2388 2.160219 TGCTTTATGAGAGCGCTTTGTG 59.840 45.455 13.26 0.00 43.02 3.33
2001 2389 2.160417 GCTTTATGAGAGCGCTTTGTGT 59.840 45.455 13.26 0.00 0.00 3.72
2002 2390 3.365364 GCTTTATGAGAGCGCTTTGTGTT 60.365 43.478 13.26 0.00 0.00 3.32
2003 2391 3.811722 TTATGAGAGCGCTTTGTGTTG 57.188 42.857 13.26 0.00 0.00 3.33
2004 2392 1.597742 ATGAGAGCGCTTTGTGTTGT 58.402 45.000 13.26 0.00 0.00 3.32
2005 2393 0.937304 TGAGAGCGCTTTGTGTTGTC 59.063 50.000 13.26 0.00 0.00 3.18
2006 2394 0.937304 GAGAGCGCTTTGTGTTGTCA 59.063 50.000 13.26 0.00 0.00 3.58
2007 2395 1.532868 GAGAGCGCTTTGTGTTGTCAT 59.467 47.619 13.26 0.00 0.00 3.06
2008 2396 1.265095 AGAGCGCTTTGTGTTGTCATG 59.735 47.619 13.26 0.00 0.00 3.07
2009 2397 0.318107 AGCGCTTTGTGTTGTCATGC 60.318 50.000 2.64 0.00 0.00 4.06
2010 2398 1.599422 GCGCTTTGTGTTGTCATGCG 61.599 55.000 0.00 0.00 40.56 4.73
2011 2399 0.316937 CGCTTTGTGTTGTCATGCGT 60.317 50.000 0.00 0.00 36.62 5.24
2012 2400 1.838913 GCTTTGTGTTGTCATGCGTT 58.161 45.000 0.00 0.00 0.00 4.84
2013 2401 1.780860 GCTTTGTGTTGTCATGCGTTC 59.219 47.619 0.00 0.00 0.00 3.95
2014 2402 2.794282 GCTTTGTGTTGTCATGCGTTCA 60.794 45.455 0.00 0.00 0.00 3.18
2015 2403 3.433709 CTTTGTGTTGTCATGCGTTCAA 58.566 40.909 0.00 0.00 0.00 2.69
2016 2404 3.494045 TTGTGTTGTCATGCGTTCAAA 57.506 38.095 0.00 0.00 0.00 2.69
2017 2405 3.706802 TGTGTTGTCATGCGTTCAAAT 57.293 38.095 0.00 0.00 0.00 2.32
2018 2406 4.820284 TGTGTTGTCATGCGTTCAAATA 57.180 36.364 0.00 0.00 0.00 1.40
2019 2407 4.782156 TGTGTTGTCATGCGTTCAAATAG 58.218 39.130 0.00 0.00 0.00 1.73
2020 2408 4.513318 TGTGTTGTCATGCGTTCAAATAGA 59.487 37.500 0.00 0.00 0.00 1.98
2021 2409 5.181056 TGTGTTGTCATGCGTTCAAATAGAT 59.819 36.000 0.00 0.00 0.00 1.98
2022 2410 6.086222 GTGTTGTCATGCGTTCAAATAGATT 58.914 36.000 0.00 0.00 0.00 2.40
2023 2411 6.032775 GTGTTGTCATGCGTTCAAATAGATTG 59.967 38.462 0.00 0.00 40.58 2.67
2024 2412 4.661125 TGTCATGCGTTCAAATAGATTGC 58.339 39.130 0.00 0.00 38.98 3.56
2025 2413 4.155644 TGTCATGCGTTCAAATAGATTGCA 59.844 37.500 0.00 0.00 39.88 4.08
2026 2414 4.731961 GTCATGCGTTCAAATAGATTGCAG 59.268 41.667 0.00 0.00 39.24 4.41
2027 2415 3.763097 TGCGTTCAAATAGATTGCAGG 57.237 42.857 0.00 0.00 38.98 4.85
2028 2416 2.159393 TGCGTTCAAATAGATTGCAGGC 60.159 45.455 0.00 0.00 43.36 4.85
2029 2417 2.098117 GCGTTCAAATAGATTGCAGGCT 59.902 45.455 0.00 0.00 41.03 4.58
2030 2418 3.428045 GCGTTCAAATAGATTGCAGGCTT 60.428 43.478 0.00 0.00 41.03 4.35
2031 2419 4.346129 CGTTCAAATAGATTGCAGGCTTC 58.654 43.478 0.00 0.00 38.98 3.86
2032 2420 4.095483 CGTTCAAATAGATTGCAGGCTTCT 59.905 41.667 0.00 0.00 38.98 2.85
2033 2421 5.338365 GTTCAAATAGATTGCAGGCTTCTG 58.662 41.667 7.32 0.00 38.98 3.02
2049 2437 3.791245 CTTCTGCTGGAAGTCCATCTAC 58.209 50.000 0.00 0.00 46.46 2.59
2050 2438 3.107402 TCTGCTGGAAGTCCATCTACT 57.893 47.619 0.00 0.00 46.46 2.57
2051 2439 4.251103 TCTGCTGGAAGTCCATCTACTA 57.749 45.455 0.00 0.00 46.46 1.82
2052 2440 4.211125 TCTGCTGGAAGTCCATCTACTAG 58.789 47.826 0.00 0.00 46.46 2.57
2053 2441 3.300388 TGCTGGAAGTCCATCTACTAGG 58.700 50.000 0.00 0.00 46.46 3.02
2054 2442 3.052869 TGCTGGAAGTCCATCTACTAGGA 60.053 47.826 0.00 0.00 46.46 2.94
2055 2443 4.156477 GCTGGAAGTCCATCTACTAGGAT 58.844 47.826 0.00 0.00 46.46 3.24
2056 2444 5.162980 TGCTGGAAGTCCATCTACTAGGATA 60.163 44.000 0.00 0.00 46.46 2.59
2057 2445 5.184287 GCTGGAAGTCCATCTACTAGGATAC 59.816 48.000 0.00 0.00 46.46 2.24
2058 2446 6.532119 TGGAAGTCCATCTACTAGGATACT 57.468 41.667 0.00 0.00 46.90 2.12
2059 2447 6.307776 TGGAAGTCCATCTACTAGGATACTG 58.692 44.000 0.00 0.00 45.37 2.74
2060 2448 6.126156 TGGAAGTCCATCTACTAGGATACTGT 60.126 42.308 0.00 0.00 45.37 3.55
2061 2449 6.431852 GGAAGTCCATCTACTAGGATACTGTC 59.568 46.154 0.00 0.00 41.74 3.51
2062 2450 7.909573 GGAAGTCCATCTACTAGGATACTGTCA 60.910 44.444 0.00 0.00 41.74 3.58
2136 2524 6.687105 GCAAAGAAAACACACAAGTAGTAGTG 59.313 38.462 0.00 0.00 41.40 2.74
2155 2543 7.055378 AGTAGTGAACTAGTCAGTATTCCGAT 58.945 38.462 0.00 0.00 42.78 4.18
2158 2546 6.603997 AGTGAACTAGTCAGTATTCCGATCTT 59.396 38.462 0.00 0.00 38.19 2.40
2166 2554 3.941483 CAGTATTCCGATCTTGCCTTGTT 59.059 43.478 0.00 0.00 0.00 2.83
2203 2591 9.237187 TCTGGATGACAATATGTAGATAGAGTC 57.763 37.037 7.26 7.26 0.00 3.36
2238 2626 0.991355 AGGGATGCCGGGGTATCAAA 60.991 55.000 16.10 0.00 38.66 2.69
2317 2724 5.411053 GCATTAGCTTGTTTTTGCCCAATTA 59.589 36.000 0.00 0.00 37.91 1.40
2329 2736 9.051679 GTTTTTGCCCAATTATGTAAAGAAAGT 57.948 29.630 0.00 0.00 0.00 2.66
2334 2741 8.474025 TGCCCAATTATGTAAAGAAAGTATTGG 58.526 33.333 0.00 0.00 40.11 3.16
2377 2784 2.238144 CAATCTGTGTGGATCCTCTGGT 59.762 50.000 14.23 1.55 0.00 4.00
2378 2785 2.030027 TCTGTGTGGATCCTCTGGTT 57.970 50.000 14.23 0.00 0.00 3.67
2425 2833 3.141398 GGTTTCTGCTTGTCATGACAGA 58.859 45.455 26.48 18.13 42.94 3.41
2442 2850 5.368145 TGACAGACTAACATTGAGTTTGCT 58.632 37.500 0.00 0.00 41.64 3.91
2477 2885 3.448093 TGTTGATCCAATGGGCTGTAA 57.552 42.857 0.00 0.00 0.00 2.41
2486 2894 3.181497 CCAATGGGCTGTAAAATGAGTCG 60.181 47.826 0.00 0.00 0.00 4.18
2632 3079 4.048820 AGATAAACACGCGTTTCTTTCG 57.951 40.909 10.22 0.00 44.27 3.46
2644 3091 2.074547 TTCTTTCGTACTGGCCTTCG 57.925 50.000 3.32 3.63 0.00 3.79
2646 3093 0.669318 CTTTCGTACTGGCCTTCGCA 60.669 55.000 3.32 0.00 36.38 5.10
2651 3098 1.470979 CGTACTGGCCTTCGCAGTTAT 60.471 52.381 3.32 0.00 36.38 1.89
2652 3099 2.629051 GTACTGGCCTTCGCAGTTATT 58.371 47.619 3.32 0.00 36.38 1.40
2656 3103 3.244976 CTGGCCTTCGCAGTTATTTTTG 58.755 45.455 3.32 0.00 36.38 2.44
2694 3141 2.040012 TCCACAGGCCACGGTTTTTATA 59.960 45.455 5.01 0.00 0.00 0.98
2702 3149 6.002082 AGGCCACGGTTTTTATAGGATATTC 58.998 40.000 5.01 0.00 0.00 1.75
2896 3343 4.142138 GCTCATTATAGGGGGTACTCATCG 60.142 50.000 0.00 0.00 0.00 3.84
2908 3355 3.495001 GGTACTCATCGGCTGAAAATAGC 59.505 47.826 0.00 0.00 42.94 2.97
2954 3402 5.114081 AGTAGCACACCCATTACGATTTAC 58.886 41.667 0.00 0.00 0.00 2.01
2986 3434 6.402222 AGAACTAATCCAGAAACTAGCAGTG 58.598 40.000 0.00 0.00 0.00 3.66
2987 3435 4.508662 ACTAATCCAGAAACTAGCAGTGC 58.491 43.478 7.13 7.13 0.00 4.40
2988 3436 3.423539 AATCCAGAAACTAGCAGTGCA 57.576 42.857 19.20 2.32 0.00 4.57
3137 3586 5.414454 TCAACAACATTGGACAATAGTAGCC 59.586 40.000 0.00 0.00 0.00 3.93
3396 3846 9.868160 TCAGGACTAGTTCTGAAGATTATATGA 57.132 33.333 28.40 4.48 37.11 2.15
3463 3913 6.013293 ACAAAGAAGGTTGGTCTCTATAGCTT 60.013 38.462 0.00 0.00 32.50 3.74
3464 3914 5.862678 AGAAGGTTGGTCTCTATAGCTTC 57.137 43.478 0.00 0.00 42.45 3.86
3478 3928 8.535335 TCTCTATAGCTTCCATGATCAATTACC 58.465 37.037 0.00 0.00 0.00 2.85
3621 4071 5.132897 TGCCAAAATTGAACAGTCCATAC 57.867 39.130 0.00 0.00 0.00 2.39
3625 4075 5.243730 CCAAAATTGAACAGTCCATACCAGT 59.756 40.000 0.00 0.00 0.00 4.00
3637 4544 6.597672 CAGTCCATACCAGTTACTGCATAAAA 59.402 38.462 6.88 0.00 32.02 1.52
3669 4576 9.195411 CAGTTTTCAGCATTTAAATTGCTCTTA 57.805 29.630 17.03 7.78 36.69 2.10
3759 4896 3.577649 TCCTTCTGTAGCTTCAGTTCG 57.422 47.619 18.55 9.07 36.85 3.95
3760 4897 3.154710 TCCTTCTGTAGCTTCAGTTCGA 58.845 45.455 18.55 10.10 36.85 3.71
3765 4902 6.073003 CCTTCTGTAGCTTCAGTTCGATTTTT 60.073 38.462 18.55 0.00 36.85 1.94
3958 5103 9.264719 AGTTCATCTTTGATTTTGCCTAAAAAG 57.735 29.630 0.00 0.00 41.00 2.27
3970 5115 5.767816 TGCCTAAAAAGGTTCAGTTCTTC 57.232 39.130 0.00 0.00 0.00 2.87
4123 5503 6.350949 GGGTATGTTACTGATGGTTTTGCATT 60.351 38.462 0.00 0.00 0.00 3.56
4126 5506 9.072294 GTATGTTACTGATGGTTTTGCATTAAC 57.928 33.333 0.00 0.00 31.98 2.01
4130 5510 4.832266 ACTGATGGTTTTGCATTAACCTCA 59.168 37.500 23.84 21.56 44.32 3.86
4137 5517 7.957002 TGGTTTTGCATTAACCTCATCTTTTA 58.043 30.769 23.84 5.76 44.32 1.52
4153 5533 9.146984 CTCATCTTTTAAACGTGTAATGACCTA 57.853 33.333 0.00 0.00 0.00 3.08
4292 5672 1.336517 GGAATCTCGTGTTGTCGGTGA 60.337 52.381 0.00 0.00 0.00 4.02
4311 5691 1.751927 GAAGGGGCCTCGTCGTCTA 60.752 63.158 1.69 0.00 0.00 2.59
4508 6211 9.246670 TGTGAATGGATATCTCTGTTTTTGAAT 57.753 29.630 2.05 0.00 0.00 2.57
4530 6233 3.000684 TCCAGTGATCAGCGTACTACT 57.999 47.619 0.00 0.00 0.00 2.57
4531 6234 4.146745 TCCAGTGATCAGCGTACTACTA 57.853 45.455 0.00 0.00 0.00 1.82
4532 6235 3.875727 TCCAGTGATCAGCGTACTACTAC 59.124 47.826 0.00 0.00 0.00 2.73
4567 6271 0.727122 GCTGAGTTGCGTTGCATCAC 60.727 55.000 0.00 0.00 38.76 3.06
4609 6318 3.991605 ATGTGCGTCGTATTCTTGTTC 57.008 42.857 0.00 0.00 0.00 3.18
4611 6320 2.984471 TGTGCGTCGTATTCTTGTTCTC 59.016 45.455 0.00 0.00 0.00 2.87
4718 6432 2.420022 GTGCTGAGCCACAAACGAATAT 59.580 45.455 0.23 0.00 35.80 1.28
4779 6495 7.786178 AAAAAGGCATTGTTTCCTAAAGTTC 57.214 32.000 0.00 0.00 31.24 3.01
4813 6529 1.986882 AGGGCCAGTGCTAATATTGC 58.013 50.000 6.18 0.76 37.74 3.56
4833 6549 3.923017 CCAAAGATCTTGGCGTTTCTT 57.077 42.857 9.17 0.00 32.18 2.52
4845 6567 2.029918 GGCGTTTCTTTGCTTGGAGATT 60.030 45.455 0.00 0.00 0.00 2.40
4921 6643 8.095792 TGGATTAGAAACGTCCTGTAAAATACA 58.904 33.333 0.00 0.00 37.13 2.29
4960 6794 7.019656 AGAAATTAAGGTGGATGCCAATTTT 57.980 32.000 0.00 0.00 34.18 1.82
4974 6822 3.437741 GCCAATTTTCTGCCATGAAAAGG 59.562 43.478 12.52 10.62 45.35 3.11
4975 6823 4.803588 GCCAATTTTCTGCCATGAAAAGGA 60.804 41.667 12.52 0.00 45.35 3.36
4984 6832 3.245371 TGCCATGAAAAGGAGATGGTCTT 60.245 43.478 0.00 0.00 39.17 3.01
4990 6838 4.141274 TGAAAAGGAGATGGTCTTTGGTCA 60.141 41.667 0.00 0.00 33.96 4.02
4992 6840 4.664688 AAGGAGATGGTCTTTGGTCATT 57.335 40.909 0.00 0.00 0.00 2.57
5033 6888 1.192534 GAGCTCAACAACACGTGCTAC 59.807 52.381 17.22 0.00 32.46 3.58
5049 7065 4.496183 CGTGCTACGTTTATCTGAAGTCTC 59.504 45.833 0.00 0.00 36.74 3.36
5064 7089 4.528206 TGAAGTCTCAAGATGCCTAGACAA 59.472 41.667 0.00 0.00 40.65 3.18
5068 7097 4.629200 GTCTCAAGATGCCTAGACAAAGTG 59.371 45.833 0.00 0.00 38.56 3.16
5076 7106 1.298859 CTAGACAAAGTGGTGCGGGC 61.299 60.000 0.00 0.00 0.00 6.13
5081 7111 4.643387 AAGTGGTGCGGGCTGGAC 62.643 66.667 9.79 9.79 38.37 4.02
5263 7298 0.110192 CTCGCTCGCAAAGAAAACCC 60.110 55.000 0.00 0.00 0.00 4.11
5265 7300 0.660300 CGCTCGCAAAGAAAACCCAC 60.660 55.000 0.00 0.00 0.00 4.61
5290 7325 2.481952 GAGATGACTTGACAACACCAGC 59.518 50.000 0.00 0.00 0.00 4.85
5291 7326 2.158769 AGATGACTTGACAACACCAGCA 60.159 45.455 0.00 0.00 0.00 4.41
5292 7327 1.378531 TGACTTGACAACACCAGCAC 58.621 50.000 0.00 0.00 0.00 4.40
5306 7341 0.603707 CAGCACCACCAGAACGACAT 60.604 55.000 0.00 0.00 0.00 3.06
5352 7387 1.446792 AGGCATGACAACTCTCGCG 60.447 57.895 0.00 0.00 0.00 5.87
5386 7421 0.606604 TCCTTCCAGTTCCAGTACGC 59.393 55.000 0.00 0.00 0.00 4.42
5438 7473 4.170062 CACATTCTGCGGCGCCAG 62.170 66.667 30.82 24.61 0.00 4.85
5454 7489 1.654954 CCAGAAGTGGCAGCATCAGC 61.655 60.000 0.00 0.00 36.89 4.26
5468 7503 1.120530 ATCAGCTACTAACCCGGGTG 58.879 55.000 31.05 19.16 0.00 4.61
5480 7515 1.227263 CCGGGTGCGTTATCCTCTG 60.227 63.158 0.00 0.00 0.00 3.35
5483 7518 1.335132 GGGTGCGTTATCCTCTGGGA 61.335 60.000 0.00 0.00 46.81 4.37
5494 7529 1.633915 CCTCTGGGAAGCCAGCTGAT 61.634 60.000 17.39 0.00 37.69 2.90
5498 7533 3.001514 GGAAGCCAGCTGATCCCA 58.998 61.111 17.39 0.00 0.00 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.434520 GGTTAGTCTGCTACAAGATCCAC 58.565 47.826 0.00 0.00 0.00 4.02
16 17 0.683504 ACCAGGCTCGATCGGTTAGT 60.684 55.000 16.41 3.04 0.00 2.24
123 124 1.419374 CACGCTCGTACAAAAGCTCT 58.581 50.000 9.42 0.00 36.35 4.09
135 136 1.938657 ATCCAGAGTCACCACGCTCG 61.939 60.000 0.00 0.00 36.88 5.03
184 185 2.650608 GGCTTGTTGAACGATGACAAC 58.349 47.619 0.00 0.00 44.21 3.32
185 186 1.262950 CGGCTTGTTGAACGATGACAA 59.737 47.619 0.00 0.00 0.00 3.18
190 192 0.865769 GTGTCGGCTTGTTGAACGAT 59.134 50.000 0.00 0.00 37.69 3.73
221 223 6.016610 GCCGAAAATAAGCCATATTGGAACTA 60.017 38.462 0.00 0.00 40.96 2.24
231 233 2.034124 AGCATGCCGAAAATAAGCCAT 58.966 42.857 15.66 0.00 0.00 4.40
242 244 3.785859 GGAGGACCAGCATGCCGA 61.786 66.667 15.66 0.00 35.97 5.54
261 263 3.323403 CAGGAAGTCACTATCCTCCATCC 59.677 52.174 5.76 0.00 44.26 3.51
265 267 2.359531 CGTCAGGAAGTCACTATCCTCC 59.640 54.545 5.76 0.00 44.26 4.30
282 284 1.724623 GCGCACAGATTAAAGACGTCA 59.275 47.619 19.50 0.00 0.00 4.35
286 288 3.536158 TTGTGCGCACAGATTAAAGAC 57.464 42.857 38.37 11.20 42.94 3.01
307 309 1.314730 GGAGCCAACGAAAACCTTGA 58.685 50.000 0.00 0.00 0.00 3.02
313 315 0.320946 CCTACCGGAGCCAACGAAAA 60.321 55.000 9.46 0.00 0.00 2.29
324 326 2.284331 TTGCTGCTCCCTACCGGA 60.284 61.111 9.46 0.00 38.83 5.14
423 428 1.050204 TAGTGGTACAACGCAACCCT 58.950 50.000 0.00 0.00 44.16 4.34
451 456 8.378172 TGCGAGAAGAACCCTAAATTATATTG 57.622 34.615 0.00 0.00 0.00 1.90
462 467 3.142174 CTCTTTTTGCGAGAAGAACCCT 58.858 45.455 8.21 0.00 31.99 4.34
465 470 3.810386 AGGTCTCTTTTTGCGAGAAGAAC 59.190 43.478 8.21 8.86 39.08 3.01
474 479 6.319141 ACACTTATCAAGGTCTCTTTTTGC 57.681 37.500 0.00 0.00 0.00 3.68
487 492 4.998033 TGCCACACGAATAACACTTATCAA 59.002 37.500 0.00 0.00 0.00 2.57
509 514 2.118683 CGAAGTTGCCATGTGTTTGTG 58.881 47.619 0.00 0.00 0.00 3.33
511 516 2.772568 TCGAAGTTGCCATGTGTTTG 57.227 45.000 0.00 0.00 0.00 2.93
541 546 8.212317 TCATTCTCGCTTCATCAAATTTATCA 57.788 30.769 0.00 0.00 0.00 2.15
544 549 9.935682 GTTATCATTCTCGCTTCATCAAATTTA 57.064 29.630 0.00 0.00 0.00 1.40
562 567 7.625606 GCCTGCTTAACAACTAACGTTATCATT 60.626 37.037 8.76 1.33 0.00 2.57
566 571 4.998672 TGCCTGCTTAACAACTAACGTTAT 59.001 37.500 8.76 0.00 0.00 1.89
571 576 6.478673 ACAAAATTGCCTGCTTAACAACTAAC 59.521 34.615 0.00 0.00 0.00 2.34
584 589 3.060607 CCGTTCGAAAACAAAATTGCCTG 60.061 43.478 0.00 0.00 34.93 4.85
586 591 2.348125 GCCGTTCGAAAACAAAATTGCC 60.348 45.455 0.00 0.00 34.93 4.52
591 597 5.120208 TGAAAATTGCCGTTCGAAAACAAAA 59.880 32.000 0.00 0.00 34.93 2.44
625 631 0.673985 GTTGCCACTTGAAGAACCCC 59.326 55.000 0.00 0.00 0.00 4.95
628 634 5.500645 ACTAAAGTTGCCACTTGAAGAAC 57.499 39.130 15.99 0.00 42.89 3.01
660 669 2.671177 CGAAGCACTCCAGCCAACG 61.671 63.158 0.00 0.00 34.23 4.10
661 670 1.598130 ACGAAGCACTCCAGCCAAC 60.598 57.895 0.00 0.00 34.23 3.77
662 671 1.597854 CACGAAGCACTCCAGCCAA 60.598 57.895 0.00 0.00 34.23 4.52
664 673 3.426568 GCACGAAGCACTCCAGCC 61.427 66.667 0.00 0.00 44.79 4.85
683 693 3.680642 ATTGATAAGCGTCACACATGC 57.319 42.857 0.00 0.00 37.27 4.06
718 731 6.538742 TCCTTATTACTTCTCCGCTGAAAATG 59.461 38.462 0.00 0.00 0.00 2.32
772 794 5.840693 AGGACATTTTTCTTCCTGTGGATTT 59.159 36.000 0.00 0.00 38.40 2.17
927 961 1.886313 CTGCTGCTGCGATCGGATT 60.886 57.895 18.30 0.00 43.34 3.01
959 993 3.320826 GGAGGTATGTTTGTTTGTTGGCT 59.679 43.478 0.00 0.00 0.00 4.75
960 994 3.068873 TGGAGGTATGTTTGTTTGTTGGC 59.931 43.478 0.00 0.00 0.00 4.52
961 995 4.340950 AGTGGAGGTATGTTTGTTTGTTGG 59.659 41.667 0.00 0.00 0.00 3.77
1082 1121 1.069296 TCACTTACGGTTACGGTCACG 60.069 52.381 0.00 0.00 46.48 4.35
1094 1133 2.882137 GAGGAGGAGGAGATCACTTACG 59.118 54.545 0.00 0.00 0.00 3.18
1184 1223 1.067776 CGGGATCTACCAATCTACGGC 60.068 57.143 0.00 0.00 41.20 5.68
1222 1261 2.975799 GGCAACGCCGAGAAACCA 60.976 61.111 0.00 0.00 39.62 3.67
1238 1277 0.462047 CCTCCCAAATTCGGACGAGG 60.462 60.000 0.00 0.00 30.89 4.63
1297 1337 1.028905 TCAGAAAACAAACCAGCCGG 58.971 50.000 0.00 0.00 38.77 6.13
1320 1360 1.094785 AATTTTCTCCCGCACATCCG 58.905 50.000 0.00 0.00 0.00 4.18
1427 1467 2.877097 TTATGCCCAACTCTGAGCAA 57.123 45.000 4.19 0.00 38.99 3.91
1428 1468 3.282021 GAATTATGCCCAACTCTGAGCA 58.718 45.455 4.19 0.00 40.00 4.26
1436 1476 9.516314 GTAAAGTATTCTTGAATTATGCCCAAC 57.484 33.333 0.95 0.00 33.79 3.77
1457 1497 9.469807 CATACATAGTAAGAAGCAGAGGTAAAG 57.530 37.037 0.00 0.00 0.00 1.85
1458 1498 8.978472 ACATACATAGTAAGAAGCAGAGGTAAA 58.022 33.333 0.00 0.00 0.00 2.01
1724 2112 2.431954 ATCTTGTCCCTGAATGCCAG 57.568 50.000 0.00 0.00 42.55 4.85
1725 2113 2.846206 ACTATCTTGTCCCTGAATGCCA 59.154 45.455 0.00 0.00 0.00 4.92
1726 2114 3.209410 CACTATCTTGTCCCTGAATGCC 58.791 50.000 0.00 0.00 0.00 4.40
1727 2115 3.878778 ACACTATCTTGTCCCTGAATGC 58.121 45.455 0.00 0.00 0.00 3.56
1728 2116 5.491070 TGAACACTATCTTGTCCCTGAATG 58.509 41.667 0.00 0.00 0.00 2.67
1729 2117 5.485353 TCTGAACACTATCTTGTCCCTGAAT 59.515 40.000 0.00 0.00 0.00 2.57
1730 2118 4.838423 TCTGAACACTATCTTGTCCCTGAA 59.162 41.667 0.00 0.00 0.00 3.02
1731 2119 4.416516 TCTGAACACTATCTTGTCCCTGA 58.583 43.478 0.00 0.00 0.00 3.86
1732 2120 4.808414 TCTGAACACTATCTTGTCCCTG 57.192 45.455 0.00 0.00 0.00 4.45
1733 2121 6.176183 CAAATCTGAACACTATCTTGTCCCT 58.824 40.000 0.00 0.00 0.00 4.20
1734 2122 5.940470 ACAAATCTGAACACTATCTTGTCCC 59.060 40.000 0.00 0.00 0.00 4.46
1735 2123 7.602644 TGTACAAATCTGAACACTATCTTGTCC 59.397 37.037 0.00 0.00 0.00 4.02
1736 2124 8.534333 TGTACAAATCTGAACACTATCTTGTC 57.466 34.615 0.00 0.00 0.00 3.18
1737 2125 7.118390 GCTGTACAAATCTGAACACTATCTTGT 59.882 37.037 0.00 0.00 0.00 3.16
1738 2126 7.118245 TGCTGTACAAATCTGAACACTATCTTG 59.882 37.037 0.00 0.00 0.00 3.02
1739 2127 7.161404 TGCTGTACAAATCTGAACACTATCTT 58.839 34.615 0.00 0.00 0.00 2.40
1740 2128 6.701340 TGCTGTACAAATCTGAACACTATCT 58.299 36.000 0.00 0.00 0.00 1.98
1741 2129 6.968131 TGCTGTACAAATCTGAACACTATC 57.032 37.500 0.00 0.00 0.00 2.08
1742 2130 6.128172 GCTTGCTGTACAAATCTGAACACTAT 60.128 38.462 0.00 0.00 37.96 2.12
1743 2131 5.179368 GCTTGCTGTACAAATCTGAACACTA 59.821 40.000 0.00 0.00 37.96 2.74
1744 2132 4.023707 GCTTGCTGTACAAATCTGAACACT 60.024 41.667 0.00 0.00 37.96 3.55
1745 2133 4.222114 GCTTGCTGTACAAATCTGAACAC 58.778 43.478 0.00 0.00 37.96 3.32
1746 2134 3.882288 TGCTTGCTGTACAAATCTGAACA 59.118 39.130 0.00 0.00 37.96 3.18
1747 2135 4.488126 TGCTTGCTGTACAAATCTGAAC 57.512 40.909 0.00 0.00 37.96 3.18
1748 2136 5.299028 TCTTTGCTTGCTGTACAAATCTGAA 59.701 36.000 0.00 0.00 37.96 3.02
1749 2137 4.821260 TCTTTGCTTGCTGTACAAATCTGA 59.179 37.500 0.00 0.00 37.96 3.27
1750 2138 5.112220 TCTTTGCTTGCTGTACAAATCTG 57.888 39.130 0.00 0.00 37.96 2.90
1751 2139 5.772825 TTCTTTGCTTGCTGTACAAATCT 57.227 34.783 0.00 0.00 37.96 2.40
1752 2140 5.175673 GGTTTCTTTGCTTGCTGTACAAATC 59.824 40.000 0.00 0.00 37.96 2.17
1753 2141 5.049828 GGTTTCTTTGCTTGCTGTACAAAT 58.950 37.500 0.00 0.00 37.96 2.32
1754 2142 4.081972 TGGTTTCTTTGCTTGCTGTACAAA 60.082 37.500 0.00 0.00 37.96 2.83
1755 2143 3.445450 TGGTTTCTTTGCTTGCTGTACAA 59.555 39.130 0.00 0.00 36.62 2.41
1756 2144 3.020274 TGGTTTCTTTGCTTGCTGTACA 58.980 40.909 0.00 0.00 0.00 2.90
1757 2145 3.181491 TGTGGTTTCTTTGCTTGCTGTAC 60.181 43.478 0.00 0.00 0.00 2.90
1758 2146 3.020274 TGTGGTTTCTTTGCTTGCTGTA 58.980 40.909 0.00 0.00 0.00 2.74
1759 2147 1.824230 TGTGGTTTCTTTGCTTGCTGT 59.176 42.857 0.00 0.00 0.00 4.40
1760 2148 2.195922 GTGTGGTTTCTTTGCTTGCTG 58.804 47.619 0.00 0.00 0.00 4.41
1761 2149 1.136891 GGTGTGGTTTCTTTGCTTGCT 59.863 47.619 0.00 0.00 0.00 3.91
1762 2150 1.134848 TGGTGTGGTTTCTTTGCTTGC 60.135 47.619 0.00 0.00 0.00 4.01
1763 2151 2.166254 ACTGGTGTGGTTTCTTTGCTTG 59.834 45.455 0.00 0.00 0.00 4.01
1764 2152 2.456577 ACTGGTGTGGTTTCTTTGCTT 58.543 42.857 0.00 0.00 0.00 3.91
1765 2153 2.143876 ACTGGTGTGGTTTCTTTGCT 57.856 45.000 0.00 0.00 0.00 3.91
1766 2154 2.949644 ACTACTGGTGTGGTTTCTTTGC 59.050 45.455 0.00 0.00 34.08 3.68
1767 2155 5.365619 ACTACTACTGGTGTGGTTTCTTTG 58.634 41.667 0.00 0.00 38.78 2.77
1768 2156 5.129815 TGACTACTACTGGTGTGGTTTCTTT 59.870 40.000 0.00 0.00 38.78 2.52
1769 2157 4.652421 TGACTACTACTGGTGTGGTTTCTT 59.348 41.667 0.00 0.00 38.78 2.52
1770 2158 4.038883 GTGACTACTACTGGTGTGGTTTCT 59.961 45.833 0.00 0.00 38.78 2.52
1771 2159 4.304939 GTGACTACTACTGGTGTGGTTTC 58.695 47.826 0.00 0.00 38.78 2.78
1772 2160 3.070590 GGTGACTACTACTGGTGTGGTTT 59.929 47.826 0.00 0.00 38.78 3.27
1773 2161 2.631545 GGTGACTACTACTGGTGTGGTT 59.368 50.000 0.00 0.00 38.78 3.67
1774 2162 2.245582 GGTGACTACTACTGGTGTGGT 58.754 52.381 0.00 0.00 40.92 4.16
1775 2163 2.231478 CTGGTGACTACTACTGGTGTGG 59.769 54.545 0.00 0.00 0.00 4.17
1776 2164 2.891580 ACTGGTGACTACTACTGGTGTG 59.108 50.000 0.00 0.00 0.00 3.82
1777 2165 3.155501 GACTGGTGACTACTACTGGTGT 58.844 50.000 0.00 0.00 0.00 4.16
1778 2166 2.492484 GGACTGGTGACTACTACTGGTG 59.508 54.545 0.00 0.00 0.00 4.17
1779 2167 2.379226 AGGACTGGTGACTACTACTGGT 59.621 50.000 0.00 0.00 0.00 4.00
1780 2168 3.018149 GAGGACTGGTGACTACTACTGG 58.982 54.545 0.00 0.00 0.00 4.00
1781 2169 3.687125 TGAGGACTGGTGACTACTACTG 58.313 50.000 0.00 0.00 0.00 2.74
1782 2170 4.528920 GATGAGGACTGGTGACTACTACT 58.471 47.826 0.00 0.00 0.00 2.57
1783 2171 3.633065 GGATGAGGACTGGTGACTACTAC 59.367 52.174 0.00 0.00 0.00 2.73
1784 2172 3.528078 AGGATGAGGACTGGTGACTACTA 59.472 47.826 0.00 0.00 0.00 1.82
1785 2173 2.313342 AGGATGAGGACTGGTGACTACT 59.687 50.000 0.00 0.00 0.00 2.57
1786 2174 2.428890 CAGGATGAGGACTGGTGACTAC 59.571 54.545 0.00 0.00 39.69 2.73
1787 2175 2.043115 ACAGGATGAGGACTGGTGACTA 59.957 50.000 0.00 0.00 39.69 2.59
1788 2176 1.203237 ACAGGATGAGGACTGGTGACT 60.203 52.381 0.00 0.00 39.69 3.41
1789 2177 1.066573 CACAGGATGAGGACTGGTGAC 60.067 57.143 0.00 0.00 39.69 3.67
1790 2178 1.269958 CACAGGATGAGGACTGGTGA 58.730 55.000 0.00 0.00 39.69 4.02
1791 2179 3.849002 CACAGGATGAGGACTGGTG 57.151 57.895 0.00 0.00 39.69 4.17
1799 2187 1.448540 GTCGGCACCACAGGATGAG 60.449 63.158 0.00 0.00 39.69 2.90
1800 2188 2.662596 GTCGGCACCACAGGATGA 59.337 61.111 0.00 0.00 39.69 2.92
1801 2189 2.815211 CGTCGGCACCACAGGATG 60.815 66.667 0.00 0.00 46.00 3.51
1802 2190 4.082523 CCGTCGGCACCACAGGAT 62.083 66.667 0.00 0.00 0.00 3.24
1804 2192 4.619227 AACCGTCGGCACCACAGG 62.619 66.667 12.28 0.00 0.00 4.00
1805 2193 2.590575 AAACCGTCGGCACCACAG 60.591 61.111 12.28 0.00 0.00 3.66
1806 2194 2.589442 GAAACCGTCGGCACCACA 60.589 61.111 12.28 0.00 0.00 4.17
1807 2195 0.600782 TAAGAAACCGTCGGCACCAC 60.601 55.000 12.28 0.00 0.00 4.16
1808 2196 0.600782 GTAAGAAACCGTCGGCACCA 60.601 55.000 12.28 0.00 0.00 4.17
1809 2197 0.320160 AGTAAGAAACCGTCGGCACC 60.320 55.000 12.28 0.00 0.00 5.01
1810 2198 2.352503 TAGTAAGAAACCGTCGGCAC 57.647 50.000 12.28 2.88 0.00 5.01
1811 2199 2.231964 ACATAGTAAGAAACCGTCGGCA 59.768 45.455 12.28 0.00 0.00 5.69
1812 2200 2.856557 GACATAGTAAGAAACCGTCGGC 59.143 50.000 12.28 0.00 0.00 5.54
1813 2201 4.103357 CAGACATAGTAAGAAACCGTCGG 58.897 47.826 10.48 10.48 31.08 4.79
1814 2202 4.730657 ACAGACATAGTAAGAAACCGTCG 58.269 43.478 0.00 0.00 31.08 5.12
1815 2203 8.524870 TTAAACAGACATAGTAAGAAACCGTC 57.475 34.615 0.00 0.00 0.00 4.79
1816 2204 8.362639 TCTTAAACAGACATAGTAAGAAACCGT 58.637 33.333 0.00 0.00 29.99 4.83
1817 2205 8.752766 TCTTAAACAGACATAGTAAGAAACCG 57.247 34.615 0.00 0.00 29.99 4.44
1826 2214 9.553064 GAATCATCCATCTTAAACAGACATAGT 57.447 33.333 0.00 0.00 32.83 2.12
1827 2215 9.551734 TGAATCATCCATCTTAAACAGACATAG 57.448 33.333 0.00 0.00 32.83 2.23
1828 2216 9.904198 TTGAATCATCCATCTTAAACAGACATA 57.096 29.630 0.00 0.00 32.83 2.29
1829 2217 8.680903 GTTGAATCATCCATCTTAAACAGACAT 58.319 33.333 0.00 0.00 32.83 3.06
1830 2218 7.665145 TGTTGAATCATCCATCTTAAACAGACA 59.335 33.333 0.00 0.00 32.83 3.41
1831 2219 8.044060 TGTTGAATCATCCATCTTAAACAGAC 57.956 34.615 0.00 0.00 32.83 3.51
1832 2220 8.514594 GTTGTTGAATCATCCATCTTAAACAGA 58.485 33.333 0.00 0.00 35.33 3.41
1833 2221 7.756722 GGTTGTTGAATCATCCATCTTAAACAG 59.243 37.037 0.00 0.00 0.00 3.16
1834 2222 7.232330 TGGTTGTTGAATCATCCATCTTAAACA 59.768 33.333 0.00 0.00 33.80 2.83
1835 2223 7.601856 TGGTTGTTGAATCATCCATCTTAAAC 58.398 34.615 0.00 0.00 33.80 2.01
1836 2224 7.577426 GCTGGTTGTTGAATCATCCATCTTAAA 60.577 37.037 0.00 0.00 36.83 1.52
1837 2225 6.127647 GCTGGTTGTTGAATCATCCATCTTAA 60.128 38.462 0.00 0.00 36.83 1.85
1838 2226 5.357878 GCTGGTTGTTGAATCATCCATCTTA 59.642 40.000 0.00 0.00 36.83 2.10
1839 2227 4.159135 GCTGGTTGTTGAATCATCCATCTT 59.841 41.667 0.00 0.00 36.83 2.40
1840 2228 3.698040 GCTGGTTGTTGAATCATCCATCT 59.302 43.478 0.00 0.00 36.83 2.90
1841 2229 3.698040 AGCTGGTTGTTGAATCATCCATC 59.302 43.478 0.00 0.00 36.83 3.51
1842 2230 3.446161 CAGCTGGTTGTTGAATCATCCAT 59.554 43.478 5.57 0.00 36.83 3.41
1843 2231 2.821378 CAGCTGGTTGTTGAATCATCCA 59.179 45.455 5.57 0.00 36.27 3.41
1844 2232 2.165030 CCAGCTGGTTGTTGAATCATCC 59.835 50.000 25.53 0.00 0.00 3.51
1845 2233 3.498927 CCAGCTGGTTGTTGAATCATC 57.501 47.619 25.53 0.00 0.00 2.92
1862 2250 2.433838 CTCAGCTGACCGCACCAG 60.434 66.667 13.74 0.00 42.61 4.00
1863 2251 4.687215 GCTCAGCTGACCGCACCA 62.687 66.667 19.92 0.00 42.61 4.17
1864 2252 4.687215 TGCTCAGCTGACCGCACC 62.687 66.667 22.72 5.04 42.61 5.01
1865 2253 2.253758 TTTGCTCAGCTGACCGCAC 61.254 57.895 25.41 9.02 42.61 5.34
1866 2254 2.110835 TTTGCTCAGCTGACCGCA 59.889 55.556 22.72 22.72 42.61 5.69
1867 2255 1.785041 TTGTTTGCTCAGCTGACCGC 61.785 55.000 13.74 16.59 39.57 5.68
1868 2256 0.236711 CTTGTTTGCTCAGCTGACCG 59.763 55.000 13.74 5.34 0.00 4.79
1869 2257 0.039708 GCTTGTTTGCTCAGCTGACC 60.040 55.000 13.74 7.29 0.00 4.02
1870 2258 0.664761 TGCTTGTTTGCTCAGCTGAC 59.335 50.000 13.74 10.67 0.00 3.51
1871 2259 1.391577 TTGCTTGTTTGCTCAGCTGA 58.608 45.000 17.19 17.19 0.00 4.26
1872 2260 2.212869 TTTGCTTGTTTGCTCAGCTG 57.787 45.000 7.63 7.63 0.00 4.24
1873 2261 2.363038 TCATTTGCTTGTTTGCTCAGCT 59.637 40.909 0.00 0.00 0.00 4.24
1874 2262 2.746269 TCATTTGCTTGTTTGCTCAGC 58.254 42.857 0.00 0.00 0.00 4.26
1875 2263 4.208460 CACTTCATTTGCTTGTTTGCTCAG 59.792 41.667 0.00 0.00 0.00 3.35
1876 2264 4.114073 CACTTCATTTGCTTGTTTGCTCA 58.886 39.130 0.00 0.00 0.00 4.26
1877 2265 3.492011 CCACTTCATTTGCTTGTTTGCTC 59.508 43.478 0.00 0.00 0.00 4.26
1878 2266 3.460103 CCACTTCATTTGCTTGTTTGCT 58.540 40.909 0.00 0.00 0.00 3.91
1879 2267 2.032636 GCCACTTCATTTGCTTGTTTGC 60.033 45.455 0.00 0.00 0.00 3.68
1880 2268 3.196463 TGCCACTTCATTTGCTTGTTTG 58.804 40.909 0.00 0.00 0.00 2.93
1881 2269 3.132646 TCTGCCACTTCATTTGCTTGTTT 59.867 39.130 0.00 0.00 0.00 2.83
1882 2270 2.694628 TCTGCCACTTCATTTGCTTGTT 59.305 40.909 0.00 0.00 0.00 2.83
1883 2271 2.295349 CTCTGCCACTTCATTTGCTTGT 59.705 45.455 0.00 0.00 0.00 3.16
1884 2272 2.555325 TCTCTGCCACTTCATTTGCTTG 59.445 45.455 0.00 0.00 0.00 4.01
1885 2273 2.555757 GTCTCTGCCACTTCATTTGCTT 59.444 45.455 0.00 0.00 0.00 3.91
1886 2274 2.157738 GTCTCTGCCACTTCATTTGCT 58.842 47.619 0.00 0.00 0.00 3.91
1887 2275 1.200948 GGTCTCTGCCACTTCATTTGC 59.799 52.381 0.00 0.00 0.00 3.68
1888 2276 2.507484 TGGTCTCTGCCACTTCATTTG 58.493 47.619 0.00 0.00 32.81 2.32
1889 2277 2.957402 TGGTCTCTGCCACTTCATTT 57.043 45.000 0.00 0.00 32.81 2.32
1890 2278 2.719739 CATGGTCTCTGCCACTTCATT 58.280 47.619 0.00 0.00 41.94 2.57
1891 2279 1.681166 GCATGGTCTCTGCCACTTCAT 60.681 52.381 0.00 0.00 41.94 2.57
1892 2280 0.321919 GCATGGTCTCTGCCACTTCA 60.322 55.000 0.00 0.00 41.94 3.02
1893 2281 1.364626 CGCATGGTCTCTGCCACTTC 61.365 60.000 0.00 0.00 41.94 3.01
1894 2282 1.376424 CGCATGGTCTCTGCCACTT 60.376 57.895 0.00 0.00 41.94 3.16
1895 2283 2.267006 CGCATGGTCTCTGCCACT 59.733 61.111 0.00 0.00 41.94 4.00
1896 2284 2.046892 ACGCATGGTCTCTGCCAC 60.047 61.111 0.00 0.00 41.94 5.01
1897 2285 2.046988 CACGCATGGTCTCTGCCA 60.047 61.111 0.00 0.00 43.48 4.92
1898 2286 2.046892 ACACGCATGGTCTCTGCC 60.047 61.111 0.00 0.00 36.24 4.85
1899 2287 1.630244 GACACACGCATGGTCTCTGC 61.630 60.000 0.00 0.00 36.26 4.26
1900 2288 0.319813 TGACACACGCATGGTCTCTG 60.320 55.000 0.00 0.00 32.84 3.35
1901 2289 0.037882 CTGACACACGCATGGTCTCT 60.038 55.000 0.00 0.00 32.84 3.10
1902 2290 1.630244 GCTGACACACGCATGGTCTC 61.630 60.000 0.00 0.00 32.84 3.36
1903 2291 1.669115 GCTGACACACGCATGGTCT 60.669 57.895 0.00 0.00 32.84 3.85
1904 2292 1.904852 CTGCTGACACACGCATGGTC 61.905 60.000 0.00 0.00 35.32 4.02
1905 2293 1.962822 CTGCTGACACACGCATGGT 60.963 57.895 0.00 0.00 35.32 3.55
1906 2294 1.632948 CTCTGCTGACACACGCATGG 61.633 60.000 0.00 0.00 35.32 3.66
1907 2295 1.785951 CTCTGCTGACACACGCATG 59.214 57.895 0.00 0.00 35.32 4.06
1908 2296 2.031516 GCTCTGCTGACACACGCAT 61.032 57.895 0.00 0.00 35.32 4.73
1909 2297 2.662857 GCTCTGCTGACACACGCA 60.663 61.111 0.00 0.00 34.54 5.24
1910 2298 2.167808 CTTGCTCTGCTGACACACGC 62.168 60.000 0.00 0.00 0.00 5.34
1911 2299 0.598419 TCTTGCTCTGCTGACACACG 60.598 55.000 0.00 0.00 0.00 4.49
1912 2300 1.262683 GTTCTTGCTCTGCTGACACAC 59.737 52.381 0.00 0.00 0.00 3.82
1913 2301 1.134431 TGTTCTTGCTCTGCTGACACA 60.134 47.619 0.00 0.00 0.00 3.72
1914 2302 1.530293 CTGTTCTTGCTCTGCTGACAC 59.470 52.381 0.00 0.00 0.00 3.67
1915 2303 1.541889 CCTGTTCTTGCTCTGCTGACA 60.542 52.381 0.00 0.00 0.00 3.58
1916 2304 1.155042 CCTGTTCTTGCTCTGCTGAC 58.845 55.000 0.00 0.00 0.00 3.51
1917 2305 0.035881 CCCTGTTCTTGCTCTGCTGA 59.964 55.000 0.00 0.00 0.00 4.26
1918 2306 0.959372 CCCCTGTTCTTGCTCTGCTG 60.959 60.000 0.00 0.00 0.00 4.41
1919 2307 1.130054 TCCCCTGTTCTTGCTCTGCT 61.130 55.000 0.00 0.00 0.00 4.24
1920 2308 0.034670 ATCCCCTGTTCTTGCTCTGC 60.035 55.000 0.00 0.00 0.00 4.26
1921 2309 1.280133 TGATCCCCTGTTCTTGCTCTG 59.720 52.381 0.00 0.00 0.00 3.35
1922 2310 1.558756 CTGATCCCCTGTTCTTGCTCT 59.441 52.381 0.00 0.00 0.00 4.09
1923 2311 1.556911 TCTGATCCCCTGTTCTTGCTC 59.443 52.381 0.00 0.00 0.00 4.26
1924 2312 1.558756 CTCTGATCCCCTGTTCTTGCT 59.441 52.381 0.00 0.00 0.00 3.91
1925 2313 2.016096 GCTCTGATCCCCTGTTCTTGC 61.016 57.143 0.00 0.00 0.00 4.01
1926 2314 1.280133 TGCTCTGATCCCCTGTTCTTG 59.720 52.381 0.00 0.00 0.00 3.02
1927 2315 1.661463 TGCTCTGATCCCCTGTTCTT 58.339 50.000 0.00 0.00 0.00 2.52
1928 2316 1.890552 ATGCTCTGATCCCCTGTTCT 58.109 50.000 0.00 0.00 0.00 3.01
1929 2317 2.172293 AGAATGCTCTGATCCCCTGTTC 59.828 50.000 0.00 0.00 0.00 3.18
1930 2318 2.203584 AGAATGCTCTGATCCCCTGTT 58.796 47.619 0.00 0.00 0.00 3.16
1931 2319 1.890552 AGAATGCTCTGATCCCCTGT 58.109 50.000 0.00 0.00 0.00 4.00
1940 2328 7.946552 TGATCGAGAATCTAACAGAATGCTCTG 60.947 40.741 1.57 1.57 43.50 3.35
1941 2329 5.843673 TCGAGAATCTAACAGAATGCTCT 57.156 39.130 0.00 0.00 42.53 4.09
1942 2330 6.143758 GTGATCGAGAATCTAACAGAATGCTC 59.856 42.308 0.00 0.00 35.67 4.26
1943 2331 5.982516 GTGATCGAGAATCTAACAGAATGCT 59.017 40.000 0.00 0.00 35.67 3.79
1944 2332 5.108065 CGTGATCGAGAATCTAACAGAATGC 60.108 44.000 0.00 0.00 38.61 3.56
1945 2333 5.400782 CCGTGATCGAGAATCTAACAGAATG 59.599 44.000 0.00 0.00 40.35 2.67
1946 2334 5.299531 TCCGTGATCGAGAATCTAACAGAAT 59.700 40.000 0.00 0.00 39.71 2.40
1947 2335 4.638865 TCCGTGATCGAGAATCTAACAGAA 59.361 41.667 0.00 0.00 39.71 3.02
1948 2336 4.196971 TCCGTGATCGAGAATCTAACAGA 58.803 43.478 0.00 0.00 39.71 3.41
1949 2337 4.532276 CTCCGTGATCGAGAATCTAACAG 58.468 47.826 0.00 0.00 39.71 3.16
1950 2338 3.315470 CCTCCGTGATCGAGAATCTAACA 59.685 47.826 0.00 0.00 39.71 2.41
1951 2339 3.564644 TCCTCCGTGATCGAGAATCTAAC 59.435 47.826 0.00 0.00 39.71 2.34
1952 2340 3.816994 TCCTCCGTGATCGAGAATCTAA 58.183 45.455 0.00 0.00 39.71 2.10
1953 2341 3.487120 TCCTCCGTGATCGAGAATCTA 57.513 47.619 0.00 0.00 39.71 1.98
1954 2342 2.350057 TCCTCCGTGATCGAGAATCT 57.650 50.000 0.00 0.00 39.71 2.40
1955 2343 3.243569 ACAATCCTCCGTGATCGAGAATC 60.244 47.826 0.00 0.00 39.71 2.52
1956 2344 2.695666 ACAATCCTCCGTGATCGAGAAT 59.304 45.455 0.00 0.00 39.71 2.40
1957 2345 2.100197 ACAATCCTCCGTGATCGAGAA 58.900 47.619 0.00 0.00 39.71 2.87
1958 2346 1.405463 CACAATCCTCCGTGATCGAGA 59.595 52.381 0.00 0.00 39.71 4.04
1959 2347 1.135139 ACACAATCCTCCGTGATCGAG 59.865 52.381 0.00 0.00 39.71 4.04
1960 2348 1.135112 CACACAATCCTCCGTGATCGA 60.135 52.381 0.00 0.00 39.71 3.59
1961 2349 1.280982 CACACAATCCTCCGTGATCG 58.719 55.000 0.00 0.00 36.91 3.69
1962 2350 1.009829 GCACACAATCCTCCGTGATC 58.990 55.000 0.00 0.00 36.91 2.92
1963 2351 0.615331 AGCACACAATCCTCCGTGAT 59.385 50.000 0.00 0.00 36.91 3.06
1964 2352 0.396435 AAGCACACAATCCTCCGTGA 59.604 50.000 0.00 0.00 36.91 4.35
1965 2353 1.238439 AAAGCACACAATCCTCCGTG 58.762 50.000 0.00 0.00 39.10 4.94
1966 2354 2.851263 TAAAGCACACAATCCTCCGT 57.149 45.000 0.00 0.00 0.00 4.69
1967 2355 3.270027 TCATAAAGCACACAATCCTCCG 58.730 45.455 0.00 0.00 0.00 4.63
1968 2356 4.517285 TCTCATAAAGCACACAATCCTCC 58.483 43.478 0.00 0.00 0.00 4.30
1969 2357 4.034975 GCTCTCATAAAGCACACAATCCTC 59.965 45.833 0.00 0.00 39.61 3.71
1970 2358 3.944015 GCTCTCATAAAGCACACAATCCT 59.056 43.478 0.00 0.00 39.61 3.24
1971 2359 3.242543 CGCTCTCATAAAGCACACAATCC 60.243 47.826 0.00 0.00 39.81 3.01
1972 2360 3.786818 GCGCTCTCATAAAGCACACAATC 60.787 47.826 0.00 0.00 39.81 2.67
1973 2361 2.096496 GCGCTCTCATAAAGCACACAAT 59.904 45.455 0.00 0.00 39.81 2.71
1974 2362 1.464608 GCGCTCTCATAAAGCACACAA 59.535 47.619 0.00 0.00 39.81 3.33
1975 2363 1.078709 GCGCTCTCATAAAGCACACA 58.921 50.000 0.00 0.00 39.81 3.72
1976 2364 1.363744 AGCGCTCTCATAAAGCACAC 58.636 50.000 2.64 0.00 39.81 3.82
1977 2365 2.099141 AAGCGCTCTCATAAAGCACA 57.901 45.000 12.06 0.00 39.81 4.57
1978 2366 2.160417 ACAAAGCGCTCTCATAAAGCAC 59.840 45.455 12.06 0.00 39.81 4.40
1979 2367 2.160219 CACAAAGCGCTCTCATAAAGCA 59.840 45.455 12.06 0.00 39.81 3.91
1980 2368 2.160417 ACACAAAGCGCTCTCATAAAGC 59.840 45.455 12.06 0.00 36.38 3.51
1981 2369 4.153986 CAACACAAAGCGCTCTCATAAAG 58.846 43.478 12.06 0.00 0.00 1.85
1982 2370 3.563808 ACAACACAAAGCGCTCTCATAAA 59.436 39.130 12.06 0.00 0.00 1.40
1983 2371 3.138304 ACAACACAAAGCGCTCTCATAA 58.862 40.909 12.06 0.00 0.00 1.90
1984 2372 2.736721 GACAACACAAAGCGCTCTCATA 59.263 45.455 12.06 0.00 0.00 2.15
1985 2373 1.532868 GACAACACAAAGCGCTCTCAT 59.467 47.619 12.06 0.00 0.00 2.90
1986 2374 0.937304 GACAACACAAAGCGCTCTCA 59.063 50.000 12.06 0.00 0.00 3.27
1987 2375 0.937304 TGACAACACAAAGCGCTCTC 59.063 50.000 12.06 0.00 0.00 3.20
1988 2376 1.265095 CATGACAACACAAAGCGCTCT 59.735 47.619 12.06 0.00 0.00 4.09
1989 2377 1.678360 CATGACAACACAAAGCGCTC 58.322 50.000 12.06 0.00 0.00 5.03
1990 2378 0.318107 GCATGACAACACAAAGCGCT 60.318 50.000 2.64 2.64 0.00 5.92
1991 2379 1.599422 CGCATGACAACACAAAGCGC 61.599 55.000 0.00 0.00 39.72 5.92
1992 2380 0.316937 ACGCATGACAACACAAAGCG 60.317 50.000 0.00 0.00 45.96 4.68
1993 2381 1.780860 GAACGCATGACAACACAAAGC 59.219 47.619 0.00 0.00 0.00 3.51
1994 2382 3.063670 TGAACGCATGACAACACAAAG 57.936 42.857 0.00 0.00 0.00 2.77
1995 2383 3.494045 TTGAACGCATGACAACACAAA 57.506 38.095 0.00 0.00 0.00 2.83
1996 2384 3.494045 TTTGAACGCATGACAACACAA 57.506 38.095 0.00 0.00 0.00 3.33
1997 2385 3.706802 ATTTGAACGCATGACAACACA 57.293 38.095 0.00 0.00 0.00 3.72
1998 2386 5.029650 TCTATTTGAACGCATGACAACAC 57.970 39.130 0.00 0.00 0.00 3.32
1999 2387 5.878332 ATCTATTTGAACGCATGACAACA 57.122 34.783 0.00 0.00 0.00 3.33
2000 2388 5.003778 GCAATCTATTTGAACGCATGACAAC 59.996 40.000 0.00 0.00 37.53 3.32
2001 2389 5.094812 GCAATCTATTTGAACGCATGACAA 58.905 37.500 0.00 0.00 37.53 3.18
2002 2390 4.155644 TGCAATCTATTTGAACGCATGACA 59.844 37.500 0.00 0.00 37.53 3.58
2003 2391 4.661125 TGCAATCTATTTGAACGCATGAC 58.339 39.130 0.00 0.00 37.53 3.06
2004 2392 4.201940 CCTGCAATCTATTTGAACGCATGA 60.202 41.667 0.00 0.00 37.53 3.07
2005 2393 4.039703 CCTGCAATCTATTTGAACGCATG 58.960 43.478 0.00 0.00 37.53 4.06
2006 2394 3.489738 GCCTGCAATCTATTTGAACGCAT 60.490 43.478 0.00 0.00 37.53 4.73
2007 2395 2.159393 GCCTGCAATCTATTTGAACGCA 60.159 45.455 0.00 0.00 37.53 5.24
2008 2396 2.098117 AGCCTGCAATCTATTTGAACGC 59.902 45.455 0.00 0.00 37.53 4.84
2009 2397 4.095483 AGAAGCCTGCAATCTATTTGAACG 59.905 41.667 0.00 0.00 37.53 3.95
2010 2398 5.338365 CAGAAGCCTGCAATCTATTTGAAC 58.662 41.667 0.00 0.00 37.53 3.18
2011 2399 5.571784 CAGAAGCCTGCAATCTATTTGAA 57.428 39.130 0.00 0.00 37.53 2.69
2036 2424 6.308566 ACAGTATCCTAGTAGATGGACTTCC 58.691 44.000 0.00 0.00 34.90 3.46
2037 2425 6.999272 TGACAGTATCCTAGTAGATGGACTTC 59.001 42.308 0.00 0.00 34.90 3.01
2038 2426 6.912426 TGACAGTATCCTAGTAGATGGACTT 58.088 40.000 0.00 0.00 34.90 3.01
2039 2427 6.517013 TGACAGTATCCTAGTAGATGGACT 57.483 41.667 0.00 0.00 34.90 3.85
2040 2428 7.768807 ATTGACAGTATCCTAGTAGATGGAC 57.231 40.000 0.00 0.00 34.90 4.02
2041 2429 8.783660 AAATTGACAGTATCCTAGTAGATGGA 57.216 34.615 0.00 0.00 36.72 3.41
2042 2430 9.915629 GTAAATTGACAGTATCCTAGTAGATGG 57.084 37.037 0.00 0.00 0.00 3.51
2043 2431 9.915629 GGTAAATTGACAGTATCCTAGTAGATG 57.084 37.037 0.00 0.00 0.00 2.90
2044 2432 9.884814 AGGTAAATTGACAGTATCCTAGTAGAT 57.115 33.333 0.00 0.00 0.00 1.98
2045 2433 9.132923 CAGGTAAATTGACAGTATCCTAGTAGA 57.867 37.037 0.00 0.00 0.00 2.59
2046 2434 8.361139 CCAGGTAAATTGACAGTATCCTAGTAG 58.639 40.741 0.00 0.00 0.00 2.57
2047 2435 7.201974 GCCAGGTAAATTGACAGTATCCTAGTA 60.202 40.741 0.00 0.00 0.00 1.82
2048 2436 6.408206 GCCAGGTAAATTGACAGTATCCTAGT 60.408 42.308 0.00 0.00 0.00 2.57
2049 2437 5.992217 GCCAGGTAAATTGACAGTATCCTAG 59.008 44.000 0.00 0.00 0.00 3.02
2050 2438 5.427157 TGCCAGGTAAATTGACAGTATCCTA 59.573 40.000 0.00 0.00 0.00 2.94
2051 2439 4.227300 TGCCAGGTAAATTGACAGTATCCT 59.773 41.667 0.00 0.00 0.00 3.24
2052 2440 4.523083 TGCCAGGTAAATTGACAGTATCC 58.477 43.478 0.00 0.00 0.00 2.59
2053 2441 6.318648 TGAATGCCAGGTAAATTGACAGTATC 59.681 38.462 0.00 0.00 0.00 2.24
2054 2442 6.186957 TGAATGCCAGGTAAATTGACAGTAT 58.813 36.000 0.00 0.00 0.00 2.12
2055 2443 5.565509 TGAATGCCAGGTAAATTGACAGTA 58.434 37.500 0.00 0.00 0.00 2.74
2056 2444 4.406456 TGAATGCCAGGTAAATTGACAGT 58.594 39.130 0.00 0.00 0.00 3.55
2057 2445 4.990257 CTGAATGCCAGGTAAATTGACAG 58.010 43.478 0.00 0.00 39.23 3.51
2136 2524 5.688176 GCAAGATCGGAATACTGACTAGTTC 59.312 44.000 0.00 0.00 38.36 3.01
2166 2554 8.753133 CATATTGTCATCCAGAGCCTAAGTATA 58.247 37.037 0.00 0.00 0.00 1.47
2238 2626 4.841422 AGATACAGAAATGAAGCAGCAGT 58.159 39.130 0.00 0.00 0.00 4.40
2317 2724 7.557719 CCATCAGGTCCAATACTTTCTTTACAT 59.442 37.037 0.00 0.00 0.00 2.29
2329 2736 4.871871 TTTTAGCCCATCAGGTCCAATA 57.128 40.909 0.00 0.00 38.26 1.90
2377 2784 9.917129 TTGAGTATCTGTTTTATCGACAACTAA 57.083 29.630 0.00 0.00 34.92 2.24
2378 2785 9.569167 CTTGAGTATCTGTTTTATCGACAACTA 57.431 33.333 0.00 0.00 34.92 2.24
2425 2833 7.282224 TCAAGTACAAGCAAACTCAATGTTAGT 59.718 33.333 0.00 0.00 38.03 2.24
2460 2868 4.608269 TCATTTTACAGCCCATTGGATCA 58.392 39.130 3.62 0.00 0.00 2.92
2477 2885 2.289631 TGGTCAGCACATCGACTCATTT 60.290 45.455 0.00 0.00 32.57 2.32
2486 2894 1.376466 ACCCACTGGTCAGCACATC 59.624 57.895 0.00 0.00 43.06 3.06
2632 3079 2.311124 ATAACTGCGAAGGCCAGTAC 57.689 50.000 5.01 0.00 38.85 2.73
2644 3091 6.667370 CCCATCCAAAAACAAAAATAACTGC 58.333 36.000 0.00 0.00 0.00 4.40
2646 3093 6.600388 AGCCCATCCAAAAACAAAAATAACT 58.400 32.000 0.00 0.00 0.00 2.24
2651 3098 4.494091 TGAGCCCATCCAAAAACAAAAA 57.506 36.364 0.00 0.00 0.00 1.94
2652 3099 4.640364 GATGAGCCCATCCAAAAACAAAA 58.360 39.130 0.00 0.00 42.55 2.44
2694 3141 7.390027 GTCAGGTATGCTAACATGAATATCCT 58.610 38.462 0.00 0.00 41.36 3.24
2702 3149 1.867233 GGCGTCAGGTATGCTAACATG 59.133 52.381 0.00 0.00 40.23 3.21
2805 3252 6.791887 TGTGCTTCAGTTAGAGAAATCAAG 57.208 37.500 0.00 0.00 0.00 3.02
2815 3262 6.551385 AGTCAAAGAATGTGCTTCAGTTAG 57.449 37.500 0.00 0.00 36.24 2.34
2896 3343 1.656652 TCGCTCTGCTATTTTCAGCC 58.343 50.000 0.00 0.00 41.04 4.85
2908 3355 8.749841 ACTTGTAGCTAAATATTATCGCTCTG 57.250 34.615 0.00 3.22 32.49 3.35
2954 3402 4.478206 TCTGGATTAGTTCTCAGCCTTG 57.522 45.455 0.00 0.00 0.00 3.61
2986 3434 5.240844 TCAAGGAACCTTAGCTAGTTTTTGC 59.759 40.000 5.75 5.26 34.50 3.68
2987 3435 6.877611 TCAAGGAACCTTAGCTAGTTTTTG 57.122 37.500 5.75 12.74 34.50 2.44
2988 3436 9.755122 ATAATCAAGGAACCTTAGCTAGTTTTT 57.245 29.630 5.75 0.00 34.50 1.94
3039 3488 8.395633 GCTTGTGTATTTTGAATCGGTAATACT 58.604 33.333 0.00 0.00 35.51 2.12
3040 3489 8.395633 AGCTTGTGTATTTTGAATCGGTAATAC 58.604 33.333 0.00 0.00 35.21 1.89
3043 3492 6.811253 AGCTTGTGTATTTTGAATCGGTAA 57.189 33.333 0.00 0.00 0.00 2.85
3044 3493 8.500753 AATAGCTTGTGTATTTTGAATCGGTA 57.499 30.769 0.00 0.00 0.00 4.02
3045 3494 7.391148 AATAGCTTGTGTATTTTGAATCGGT 57.609 32.000 0.00 0.00 0.00 4.69
3081 3530 7.066887 TGCAGTTTGACTCTTAGAACAAAATGA 59.933 33.333 27.71 17.80 44.93 2.57
3137 3586 8.159344 AGAGTTTGAGATAAACCAAAACAGAG 57.841 34.615 0.00 0.00 34.52 3.35
3241 3691 4.444056 CCGACATGGTGCTAAAAACAAAAG 59.556 41.667 0.00 0.00 0.00 2.27
3244 3694 2.294791 CCCGACATGGTGCTAAAAACAA 59.705 45.455 0.00 0.00 35.15 2.83
3463 3913 4.860802 ACCACAGGTAATTGATCATGGA 57.139 40.909 13.34 0.00 32.11 3.41
3464 3914 6.376864 TGTTAACCACAGGTAATTGATCATGG 59.623 38.462 2.48 0.69 33.12 3.66
3478 3928 4.566545 TTGTGCTTGATGTTAACCACAG 57.433 40.909 2.48 0.00 39.40 3.66
3669 4576 4.307432 CCGCTCGTGATCCTACAATTATT 58.693 43.478 0.00 0.00 0.00 1.40
3685 4822 0.462047 AGTCAAAATAGGCCCGCTCG 60.462 55.000 0.00 0.00 0.00 5.03
3759 4896 6.311200 ACTCAAGCACTGAACAAACAAAAATC 59.689 34.615 0.00 0.00 32.17 2.17
3760 4897 6.165577 ACTCAAGCACTGAACAAACAAAAAT 58.834 32.000 0.00 0.00 32.17 1.82
3765 4902 3.128589 GGAACTCAAGCACTGAACAAACA 59.871 43.478 0.00 0.00 32.17 2.83
3802 4939 5.472148 CAGACTGCAAAGCAAAATATCCAA 58.528 37.500 0.00 0.00 38.41 3.53
3803 4940 4.082081 CCAGACTGCAAAGCAAAATATCCA 60.082 41.667 0.00 0.00 38.41 3.41
3938 5083 7.560368 TGAACCTTTTTAGGCAAAATCAAAGA 58.440 30.769 0.00 0.00 33.73 2.52
3970 5115 0.035881 TGCAGGCCTTCAGAACTCAG 59.964 55.000 0.00 0.00 0.00 3.35
4123 5503 9.491675 TCATTACACGTTTAAAAGATGAGGTTA 57.508 29.630 8.18 0.00 0.00 2.85
4126 5506 7.119262 AGGTCATTACACGTTTAAAAGATGAGG 59.881 37.037 8.18 0.00 0.00 3.86
4130 5510 8.098912 AGGTAGGTCATTACACGTTTAAAAGAT 58.901 33.333 8.18 0.00 0.00 2.40
4137 5517 4.527816 TGGTAGGTAGGTCATTACACGTTT 59.472 41.667 0.00 0.00 0.00 3.60
4140 5520 4.724074 TTGGTAGGTAGGTCATTACACG 57.276 45.455 0.00 0.00 0.00 4.49
4292 5672 2.207501 TAGACGACGAGGCCCCTTCT 62.208 60.000 0.00 0.00 0.00 2.85
4508 6211 4.715713 AGTAGTACGCTGATCACTGGATA 58.284 43.478 0.00 0.00 32.67 2.59
4530 6233 5.246203 ACTCAGCAAGTCAGAATGGTAAGTA 59.754 40.000 0.00 0.00 36.16 2.24
4531 6234 4.040952 ACTCAGCAAGTCAGAATGGTAAGT 59.959 41.667 0.00 0.00 36.16 2.24
4532 6235 4.573900 ACTCAGCAAGTCAGAATGGTAAG 58.426 43.478 0.00 0.00 36.16 2.34
4567 6271 5.947228 TTCAGAAGCCTAAACACTGAATG 57.053 39.130 0.00 0.00 40.86 2.67
4718 6432 2.550277 TCCCTAGTCAAGGCTGATGA 57.450 50.000 0.00 0.00 45.03 2.92
4779 6495 0.107459 GCCCTAGCTCCTGGTTTCAG 60.107 60.000 0.00 0.00 37.07 3.02
4813 6529 3.923017 AAGAAACGCCAAGATCTTTGG 57.077 42.857 4.86 11.81 42.37 3.28
4833 6549 3.453916 TTGGCCAATCTCCAAGCAA 57.546 47.368 16.05 0.00 38.57 3.91
4960 6794 2.309755 ACCATCTCCTTTTCATGGCAGA 59.690 45.455 0.00 0.00 40.85 4.26
4974 6822 5.163612 GCCTTAAATGACCAAAGACCATCTC 60.164 44.000 0.00 0.00 0.00 2.75
4975 6823 4.706962 GCCTTAAATGACCAAAGACCATCT 59.293 41.667 0.00 0.00 0.00 2.90
4984 6832 3.080300 ACCATCGCCTTAAATGACCAA 57.920 42.857 0.00 0.00 0.00 3.67
4990 6838 5.995282 TCGAATCAATACCATCGCCTTAAAT 59.005 36.000 0.00 0.00 35.39 1.40
4992 6840 4.951254 TCGAATCAATACCATCGCCTTAA 58.049 39.130 0.00 0.00 35.39 1.85
5033 6888 5.006165 GGCATCTTGAGACTTCAGATAAACG 59.994 44.000 0.00 0.00 34.15 3.60
5049 7065 3.438087 CACCACTTTGTCTAGGCATCTTG 59.562 47.826 0.00 0.00 0.00 3.02
5064 7089 4.643387 GTCCAGCCCGCACCACTT 62.643 66.667 0.00 0.00 0.00 3.16
5092 7122 1.906824 TCCCACTGACACGGAGACC 60.907 63.158 0.00 0.00 0.00 3.85
5135 7169 3.056891 TCGCTTCGCCATGATATGATACA 60.057 43.478 0.00 0.00 0.00 2.29
5214 7248 0.172803 GCTGATGGAAAAGCAGGCAG 59.827 55.000 0.00 0.00 42.82 4.85
5215 7249 0.251474 AGCTGATGGAAAAGCAGGCA 60.251 50.000 0.00 0.00 42.82 4.75
5216 7250 0.893447 AAGCTGATGGAAAAGCAGGC 59.107 50.000 0.00 0.00 42.82 4.85
5217 7251 1.475682 GGAAGCTGATGGAAAAGCAGG 59.524 52.381 0.00 0.00 42.82 4.85
5263 7298 2.989840 GTTGTCAAGTCATCTCCTCGTG 59.010 50.000 0.00 0.00 0.00 4.35
5265 7300 2.989840 GTGTTGTCAAGTCATCTCCTCG 59.010 50.000 0.00 0.00 0.00 4.63
5290 7325 1.577328 GGCATGTCGTTCTGGTGGTG 61.577 60.000 0.00 0.00 0.00 4.17
5291 7326 1.302511 GGCATGTCGTTCTGGTGGT 60.303 57.895 0.00 0.00 0.00 4.16
5292 7327 1.003355 AGGCATGTCGTTCTGGTGG 60.003 57.895 0.00 0.00 0.00 4.61
5352 7387 2.805099 GGAAGGATGTGATCAAGATCGC 59.195 50.000 14.91 14.91 45.79 4.58
5386 7421 2.485122 GTTCGGGAATGGCTTGCG 59.515 61.111 0.00 0.00 0.00 4.85
5397 7432 2.090524 GTTCGGCTGTACGTTCGGG 61.091 63.158 0.00 0.00 34.94 5.14
5454 7489 0.817013 TAACGCACCCGGGTTAGTAG 59.183 55.000 27.83 14.29 45.63 2.57
5468 7503 0.533085 GGCTTCCCAGAGGATAACGC 60.533 60.000 0.00 0.00 43.54 4.84
5480 7515 2.194326 GGGATCAGCTGGCTTCCC 59.806 66.667 25.02 25.02 41.04 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.