AutoCloner

Multiple sequence alignment - TraesCS3A01G168400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G168400	chr3A	100.000	3948	0	0	1	3948	175843695	175847642	0.000000e+00	7291.0
1	TraesCS3A01G168400	chr3A	85.789	767	104	2	3172	3934	635732704	635733469	0.000000e+00	808.0
2	TraesCS3A01G168400	chr3D	94.494	1780	61	19	1352	3114	156211126	156212885	0.000000e+00	2710.0
3	TraesCS3A01G168400	chr3D	93.373	1343	65	7	3	1326	156209719	156211056	0.000000e+00	1965.0
4	TraesCS3A01G168400	chr3B	93.246	1673	67	23	1530	3173	225317047	225315392	0.000000e+00	2422.0
5	TraesCS3A01G168400	chr3B	92.416	778	53	5	3177	3948	677624285	677623508	0.000000e+00	1105.0
6	TraesCS3A01G168400	chr3B	94.884	606	19	6	716	1321	225320182	225319589	0.000000e+00	937.0
7	TraesCS3A01G168400	chr3B	86.042	523	46	16	1	497	225321074	225320553	1.610000e-148	536.0
8	TraesCS3A01G168400	chr3B	96.855	159	5	0	1352	1510	225318160	225318002	2.340000e-67	267.0
9	TraesCS3A01G168400	chr7B	85.555	2333	217	74	750	3013	538570655	538572936	0.000000e+00	2331.0
10	TraesCS3A01G168400	chr7B	78.652	445	90	4	2477	2920	683467408	683466968	1.390000e-74	291.0
11	TraesCS3A01G168400	chr7A	84.251	2362	228	75	750	3013	581034923	581037238	0.000000e+00	2169.0
12	TraesCS3A01G168400	chr7A	78.423	482	95	8	2469	2947	694516373	694515898	4.960000e-79	305.0
13	TraesCS3A01G168400	chr7D	84.709	2302	207	79	750	2968	510323098	510325337	0.000000e+00	2167.0
14	TraesCS3A01G168400	chr7D	79.167	456	84	10	2469	2920	602847424	602846976	4.960000e-79	305.0
15	TraesCS3A01G168400	chr4B	93.205	780	42	2	3173	3948	480842670	480843442	0.000000e+00	1136.0
16	TraesCS3A01G168400	chr4B	86.802	197	24	2	1	196	90464209	90464404	6.640000e-53	219.0
17	TraesCS3A01G168400	chr1B	89.527	783	78	1	3170	3948	46558295	46559077	0.000000e+00	989.0
18	TraesCS3A01G168400	chr1B	88.476	781	84	4	3170	3946	518792695	518791917	0.000000e+00	939.0
19	TraesCS3A01G168400	chr1B	87.245	196	25	0	1	196	161983465	161983660	1.430000e-54	224.0
20	TraesCS3A01G168400	chr1D	86.812	781	98	4	3170	3946	375359918	375359139	0.000000e+00	867.0
21	TraesCS3A01G168400	chr1D	86.070	201	25	3	1	200	447509509	447509311	3.090000e-51	213.0
22	TraesCS3A01G168400	chr5D	86.753	770	94	5	3171	3934	461048253	461049020	0.000000e+00	850.0
23	TraesCS3A01G168400	chr4D	86.328	768	99	3	3172	3934	56747589	56748355	0.000000e+00	832.0
24	TraesCS3A01G168400	chr6B	86.216	769	98	4	3171	3934	520856587	520857352	0.000000e+00	826.0
25	TraesCS3A01G168400	chr6B	85.714	203	28	1	1	203	716538213	716538012	3.090000e-51	213.0
26	TraesCS3A01G168400	chr1A	89.796	196	20	0	1	196	77284049	77283854	6.550000e-63	252.0
27	TraesCS3A01G168400	chr5B	87.500	192	23	1	9	200	45868536	45868726	1.850000e-53	220.0
28	TraesCS3A01G168400	chr5B	85.784	204	25	4	1	203	628671170	628670970	3.090000e-51	213.0
29	TraesCS3A01G168400	chr2D	88.043	184	22	0	13	196	576579460	576579277	6.640000e-53	219.0
30	TraesCS3A01G168400	chr2D	85.321	109	13	3	1758	1865	476688341	476688447	4.170000e-20	110.0
31	TraesCS3A01G168400	chr6D	82.456	171	22	6	1132	1298	438810504	438810338	4.110000e-30	143.0
32	TraesCS3A01G168400	chr6A	80.702	171	25	6	1132	1298	587569792	587569626	4.140000e-25	126.0
33	TraesCS3A01G168400	chr2A	85.417	96	14	0	1758	1853	618972883	618972978	2.510000e-17	100.0
34	TraesCS3A01G168400	chr4A	84.375	64	10	0	1356	1419	597945581	597945518	3.290000e-06	63.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G168400	chr3A	175843695	175847642	3947	False	7291.0	7291	100.00000	1	3948	1	chr3A.!!$F1	3947
1	TraesCS3A01G168400	chr3A	635732704	635733469	765	False	808.0	808	85.78900	3172	3934	1	chr3A.!!$F2	762
2	TraesCS3A01G168400	chr3D	156209719	156212885	3166	False	2337.5	2710	93.93350	3	3114	2	chr3D.!!$F1	3111
3	TraesCS3A01G168400	chr3B	677623508	677624285	777	True	1105.0	1105	92.41600	3177	3948	1	chr3B.!!$R1	771
4	TraesCS3A01G168400	chr3B	225315392	225321074	5682	True	1040.5	2422	92.75675	1	3173	4	chr3B.!!$R2	3172
5	TraesCS3A01G168400	chr7B	538570655	538572936	2281	False	2331.0	2331	85.55500	750	3013	1	chr7B.!!$F1	2263
6	TraesCS3A01G168400	chr7A	581034923	581037238	2315	False	2169.0	2169	84.25100	750	3013	1	chr7A.!!$F1	2263
7	TraesCS3A01G168400	chr7D	510323098	510325337	2239	False	2167.0	2167	84.70900	750	2968	1	chr7D.!!$F1	2218
8	TraesCS3A01G168400	chr4B	480842670	480843442	772	False	1136.0	1136	93.20500	3173	3948	1	chr4B.!!$F2	775
9	TraesCS3A01G168400	chr1B	46558295	46559077	782	False	989.0	989	89.52700	3170	3948	1	chr1B.!!$F1	778
10	TraesCS3A01G168400	chr1B	518791917	518792695	778	True	939.0	939	88.47600	3170	3946	1	chr1B.!!$R1	776
11	TraesCS3A01G168400	chr1D	375359139	375359918	779	True	867.0	867	86.81200	3170	3946	1	chr1D.!!$R1	776
12	TraesCS3A01G168400	chr5D	461048253	461049020	767	False	850.0	850	86.75300	3171	3934	1	chr5D.!!$F1	763
13	TraesCS3A01G168400	chr4D	56747589	56748355	766	False	832.0	832	86.32800	3172	3934	1	chr4D.!!$F1	762
14	TraesCS3A01G168400	chr6B	520856587	520857352	765	False	826.0	826	86.21600	3171	3934	1	chr6B.!!$F1	763

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
185	186	0.835941	ACACCTCCATCAGAGCCATC	59.164	55.0	0.0	0.0	41.74	3.51	F
1283	1568	0.252103	AACAAGCCCCTCGTCCTCTA	60.252	55.0	0.0	0.0	0.00	2.43	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2002	4687	1.300963	GATGTGCCTGCTCTTGGGA	59.699	57.895	0.0	0.0	0.00	4.37	R
3151	5883	0.592247	GGCACCAAATTAGATGCGCG	60.592	55.000	0.0	0.0	39.02	6.86	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
74	75	2.748532	CCTCGATAACCGGATACCTCTC	59.251	54.545	9.46	0.00	39.14	3.20
110	111	5.769484	ATGATAAAGACGTCTCATACCGT	57.231	39.130	20.33	5.09	40.54	4.83
149	150	2.007049	GCACCACCTTCGATCGAACAT	61.007	52.381	25.96	14.15	0.00	2.71
175	176	4.287067	ACAGACTAAACATGACACCTCCAT	59.713	41.667	0.00	0.00	0.00	3.41
185	186	0.835941	ACACCTCCATCAGAGCCATC	59.164	55.000	0.00	0.00	41.74	3.51
567	606	4.741239	GGGGAGGAGGGGCACAGA	62.741	72.222	0.00	0.00	0.00	3.41
626	858	7.390440	CCAGTGAGTGGTGAAGTAAATAATTGA	59.610	37.037	0.00	0.00	42.17	2.57
633	865	6.592607	TGGTGAAGTAAATAATTGACGGAGAC	59.407	38.462	0.00	0.00	0.00	3.36
698	930	1.074319	CTCGGTTAGCTGCGCGTTAA	61.074	55.000	8.43	3.67	0.00	2.01
703	935	2.096119	GGTTAGCTGCGCGTTAAAGAAA	60.096	45.455	8.43	0.00	0.00	2.52
863	1114	1.592131	CCGAACACGGTCGAAACCA	60.592	57.895	5.96	0.00	46.86	3.67
932	1183	1.481056	CGCCCCCGAGGAGGAATATT	61.481	60.000	0.00	0.00	45.00	1.28
935	1186	1.629043	CCCCGAGGAGGAATATTCGA	58.371	55.000	9.32	0.00	45.00	3.71
947	1198	6.325919	AGGAATATTCGAAGAGCAGAGTAG	57.674	41.667	9.32	0.00	38.43	2.57
1283	1568	0.252103	AACAAGCCCCTCGTCCTCTA	60.252	55.000	0.00	0.00	0.00	2.43
1284	1569	0.971447	ACAAGCCCCTCGTCCTCTAC	60.971	60.000	0.00	0.00	0.00	2.59
1492	3176	6.542574	ACAAACGTACCAAACAATTCGATA	57.457	33.333	0.00	0.00	0.00	2.92
1517	3213	3.609373	CACATTGCCGTCAAATTTGCTAG	59.391	43.478	13.54	6.82	35.56	3.42
1519	3215	2.987413	TGCCGTCAAATTTGCTAGTG	57.013	45.000	13.54	1.65	0.00	2.74
1524	3220	3.482786	CGTCAAATTTGCTAGTGACAGC	58.517	45.455	13.54	1.00	40.32	4.40
1526	3222	4.667668	CGTCAAATTTGCTAGTGACAGCTC	60.668	45.833	13.54	0.00	42.30	4.09
1527	3223	3.433274	TCAAATTTGCTAGTGACAGCTCG	59.567	43.478	13.54	0.00	42.30	5.03
1715	4379	8.281212	TCCTTCATTTATTTTTCTACTCCAGC	57.719	34.615	0.00	0.00	0.00	4.85
1755	4432	4.028383	GTGGATGCGTTCGTGAATTAATG	58.972	43.478	0.00	0.00	0.00	1.90
2002	4687	2.576615	GTGGAGCAGAACAAGAAGGTT	58.423	47.619	0.00	0.00	0.00	3.50
2004	4689	2.155279	GGAGCAGAACAAGAAGGTTCC	58.845	52.381	2.68	0.00	46.52	3.62
2227	4922	0.101399	AGCTCTACGACGCCATCAAG	59.899	55.000	0.00	0.00	0.00	3.02
2272	4967	1.777819	CAACAGCAGCGACTTCTCG	59.222	57.895	0.00	0.00	43.28	4.04
2456	5160	2.137528	TCCGACAACAGCAGGTCCA	61.138	57.895	0.00	0.00	0.00	4.02
2580	5284	3.138625	CATCCCCTACGCGTGGAT	58.861	61.111	25.25	22.56	39.47	3.41
2933	5637	0.249955	CAAGGAATTGCCGCCCAAAT	59.750	50.000	0.00	0.00	43.43	2.32
2968	5675	3.092301	AGCTTGGGAAAATAGTGCTTCC	58.908	45.455	0.00	0.00	40.44	3.46
2970	5677	3.129462	GCTTGGGAAAATAGTGCTTCCTC	59.871	47.826	1.19	0.00	40.88	3.71
2972	5679	1.671328	GGGAAAATAGTGCTTCCTCGC	59.329	52.381	1.19	0.00	40.88	5.03
2973	5680	1.671328	GGAAAATAGTGCTTCCTCGCC	59.329	52.381	0.00	0.00	38.48	5.54
2975	5682	0.462047	AAATAGTGCTTCCTCGCCGG	60.462	55.000	0.00	0.00	0.00	6.13
2984	5707	1.906105	TTCCTCGCCGGCAAGGTATT	61.906	55.000	32.13	0.00	43.70	1.89
3133	5865	8.439993	TTTGTTGTTGCAATAGTGTAGAACTA	57.560	30.769	0.59	0.00	45.47	2.24
3151	5883	9.989869	GTAGAACTAAACTTATCAAAATGAGGC	57.010	33.333	0.00	0.00	0.00	4.70
3152	5884	7.752695	AGAACTAAACTTATCAAAATGAGGCG	58.247	34.615	0.00	0.00	0.00	5.52
3237	5973	0.917533	AGCATCATCAGCCAAGAGGT	59.082	50.000	0.00	0.00	37.19	3.85
3388	6128	2.863137	GACAGCTAGCTCTCCAATTTCG	59.137	50.000	16.15	1.71	0.00	3.46
3426	6166	4.460263	ACAACAGAAAGGCTATTGTGACA	58.540	39.130	11.49	0.00	42.39	3.58
3430	6170	5.865085	ACAGAAAGGCTATTGTGACAAGTA	58.135	37.500	3.74	0.00	0.00	2.24
3433	6173	7.448469	ACAGAAAGGCTATTGTGACAAGTATTT	59.552	33.333	3.74	0.86	0.00	1.40
3532	6272	4.214383	CGCAGCGCCATTGTCTCG	62.214	66.667	2.29	0.00	0.00	4.04
3598	6339	3.944015	CACCCAACAAAGCATTTTTGGAA	59.056	39.130	18.66	0.00	43.01	3.53
3655	6396	0.735978	CGTTCACAGCCGCATCTGTA	60.736	55.000	7.43	0.00	44.81	2.74
3675	6416	6.042093	TCTGTATTGATCTTGACTATCCCCAC	59.958	42.308	0.00	0.00	0.00	4.61
3679	6420	2.940514	TCTTGACTATCCCCACCTCA	57.059	50.000	0.00	0.00	0.00	3.86
3738	6479	3.441222	TGTTTGTCTGGCATATCAAGCAG	59.559	43.478	10.12	0.00	30.34	4.24
3817	6559	5.359860	TGCATGAGTAACTCTATTCCTCGAA	59.640	40.000	0.00	0.00	0.00	3.71
3826	6568	6.365970	ACTCTATTCCTCGAATGCCATATT	57.634	37.500	0.00	0.00	33.95	1.28
3839	6581	4.445557	TGCCATATTGCCCACATAACTA	57.554	40.909	0.00	0.00	0.00	2.24
3872	6614	2.351738	GCCCTTTCCACATCAGAAAACG	60.352	50.000	0.00	0.00	33.06	3.60

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
51	52	0.245813	GGTATCCGGTTATCGAGGCC	59.754	60.000	0.00	0.00	42.43	5.19
74	75	6.504954	CGTCTTTATCATTCGTTGTCTTCTCG	60.505	42.308	0.00	0.00	0.00	4.04
149	150	5.290493	AGGTGTCATGTTTAGTCTGTTGA	57.710	39.130	0.00	0.00	0.00	3.18
175	176	0.460811	GTGATGCACGATGGCTCTGA	60.461	55.000	0.00	0.00	34.04	3.27
381	399	2.031919	TTGTGACGATGCCGCCTT	59.968	55.556	0.00	0.00	39.95	4.35
453	480	1.375396	CCCCGTCGCTGATCAACAA	60.375	57.895	0.00	0.00	0.00	2.83
528	555	2.671070	CCACAACCGATGCCTCCT	59.329	61.111	0.00	0.00	0.00	3.69
564	603	1.205655	TCACATTCTCTCCGCCTTCTG	59.794	52.381	0.00	0.00	0.00	3.02
567	606	1.902508	TCTTCACATTCTCTCCGCCTT	59.097	47.619	0.00	0.00	0.00	4.35
597	636	1.367471	CTTCACCACTCACTGGCGA	59.633	57.895	0.00	0.00	45.32	5.54
602	834	7.117812	CGTCAATTATTTACTTCACCACTCACT	59.882	37.037	0.00	0.00	0.00	3.41
603	835	7.234384	CGTCAATTATTTACTTCACCACTCAC	58.766	38.462	0.00	0.00	0.00	3.51
608	840	6.592607	GTCTCCGTCAATTATTTACTTCACCA	59.407	38.462	0.00	0.00	0.00	4.17
613	845	4.266976	CGCGTCTCCGTCAATTATTTACTT	59.733	41.667	0.00	0.00	36.15	2.24
622	854	3.701604	GAGCCGCGTCTCCGTCAAT	62.702	63.158	5.72	0.00	36.15	2.57
633	865	0.600255	AATTTATCCTCCGAGCCGCG	60.600	55.000	0.00	0.00	40.47	6.46
658	890	5.357742	AGCCCCAATTTAGCCAATAAAAG	57.642	39.130	0.00	0.00	36.94	2.27
711	943	4.371681	ACCCCTTATCCAGTGTTAGTGAT	58.628	43.478	0.00	0.00	0.00	3.06
722	954	2.023695	ACTCTAACCGACCCCTTATCCA	60.024	50.000	0.00	0.00	0.00	3.41
728	960	1.551019	GGCAACTCTAACCGACCCCT	61.551	60.000	0.00	0.00	0.00	4.79
863	1114	7.655490	CATCAGGTTGAAAGTTTTTCAGATCT	58.345	34.615	4.63	0.00	0.00	2.75
932	1183	0.448197	CGTGCTACTCTGCTCTTCGA	59.552	55.000	0.00	0.00	0.00	3.71
935	1186	1.133407	GCTACGTGCTACTCTGCTCTT	59.867	52.381	0.00	0.00	38.95	2.85
947	1198	2.062779	CTCGTGAACTGCTACGTGC	58.937	57.895	0.00	0.00	40.87	5.34
1474	3158	5.346551	TGTGACTATCGAATTGTTTGGTACG	59.653	40.000	0.00	0.00	0.00	3.67
1492	3176	3.641648	CAAATTTGACGGCAATGTGACT	58.358	40.909	13.08	0.00	33.25	3.41
1618	4270	1.594836	GGCGGTGGTGTTCGTGTAA	60.595	57.895	0.00	0.00	0.00	2.41
1711	4375	6.073003	CCACTCAAGTTAACTAAGAAAGCTGG	60.073	42.308	19.53	13.73	0.00	4.85
1712	4376	6.706270	TCCACTCAAGTTAACTAAGAAAGCTG	59.294	38.462	19.53	8.59	0.00	4.24
1713	4377	6.827727	TCCACTCAAGTTAACTAAGAAAGCT	58.172	36.000	19.53	0.00	0.00	3.74
1714	4378	7.522374	CATCCACTCAAGTTAACTAAGAAAGC	58.478	38.462	19.53	0.00	0.00	3.51
1715	4379	7.522374	GCATCCACTCAAGTTAACTAAGAAAG	58.478	38.462	19.53	11.09	0.00	2.62
1755	4432	1.464429	CGTGTACGCGTCATGAGCTC	61.464	60.000	18.63	6.82	0.00	4.09
2002	4687	1.300963	GATGTGCCTGCTCTTGGGA	59.699	57.895	0.00	0.00	0.00	4.37
2004	4689	1.471119	ATTGATGTGCCTGCTCTTGG	58.529	50.000	0.00	0.00	0.00	3.61
2111	4806	2.889045	TCCCGATCTGGAAACGTATAGG	59.111	50.000	2.94	0.00	42.00	2.57
2113	4808	3.243168	CGTTCCCGATCTGGAAACGTATA	60.243	47.826	18.99	0.00	45.67	1.47
2114	4809	2.480759	CGTTCCCGATCTGGAAACGTAT	60.481	50.000	18.99	0.00	45.67	3.06
2272	4967	2.047179	GGGTTCTGGCCTGACGAC	60.047	66.667	12.53	8.80	0.00	4.34
2278	4973	3.185203	TTGCTGGGGTTCTGGCCT	61.185	61.111	3.32	0.00	0.00	5.19
2878	5582	3.991725	GAAGAGCTGCCTGGCCTGG	62.992	68.421	23.89	23.89	0.00	4.45
2968	5675	1.597663	CTAAAATACCTTGCCGGCGAG	59.402	52.381	33.44	33.44	35.61	5.03
2970	5677	1.597663	CTCTAAAATACCTTGCCGGCG	59.402	52.381	23.90	10.49	35.61	6.46
2972	5679	3.277142	ACCTCTAAAATACCTTGCCGG	57.723	47.619	0.00	0.00	39.35	6.13
2973	5680	4.007659	ACAACCTCTAAAATACCTTGCCG	58.992	43.478	0.00	0.00	0.00	5.69
2975	5682	6.977213	TCAAACAACCTCTAAAATACCTTGC	58.023	36.000	0.00	0.00	0.00	4.01
2978	5685	7.947890	TCCAATCAAACAACCTCTAAAATACCT	59.052	33.333	0.00	0.00	0.00	3.08
2979	5686	8.117813	TCCAATCAAACAACCTCTAAAATACC	57.882	34.615	0.00	0.00	0.00	2.73
2984	5707	8.017418	ACAATTCCAATCAAACAACCTCTAAA	57.983	30.769	0.00	0.00	0.00	1.85
3110	5842	8.339714	GTTTAGTTCTACACTATTGCAACAACA	58.660	33.333	0.00	0.00	37.84	3.33
3126	5858	8.879759	CGCCTCATTTTGATAAGTTTAGTTCTA	58.120	33.333	0.00	0.00	0.00	2.10
3133	5865	3.758300	CGCGCCTCATTTTGATAAGTTT	58.242	40.909	0.00	0.00	0.00	2.66
3151	5883	0.592247	GGCACCAAATTAGATGCGCG	60.592	55.000	0.00	0.00	39.02	6.86
3152	5884	0.740737	AGGCACCAAATTAGATGCGC	59.259	50.000	0.00	0.00	39.02	6.09
3189	5924	7.931275	AGTTCTTTCGTTGAATAAAAGCTCTT	58.069	30.769	0.00	0.00	31.55	2.85
3237	5973	2.307686	GACCATCTTTCCTACCCACCAA	59.692	50.000	0.00	0.00	0.00	3.67
3243	5979	5.148502	TGGATCTAGACCATCTTTCCTACC	58.851	45.833	9.25	0.00	32.03	3.18
3305	6045	0.406361	AATGTTCCGGCCCACCTTTA	59.594	50.000	0.00	0.00	0.00	1.85
3388	6128	4.578928	TCTGTTGTGGCTCCTTTACTTTTC	59.421	41.667	0.00	0.00	0.00	2.29
3532	6272	3.186613	GGATTTCGGATCCGTTCATTAGC	59.813	47.826	32.15	14.80	40.74	3.09
3534	6274	3.495453	GGGGATTTCGGATCCGTTCATTA	60.495	47.826	32.15	10.60	39.07	1.90
3562	6302	1.072266	TGGGTGCATGGAGTAAACCT	58.928	50.000	0.00	0.00	0.00	3.50
3598	6339	2.203153	GTGGGTGGTGTTGCTCGT	60.203	61.111	0.00	0.00	0.00	4.18
3655	6396	4.310740	AGGTGGGGATAGTCAAGATCAAT	58.689	43.478	0.00	0.00	0.00	2.57
3679	6420	0.332972	GCTTTGGGTGGATTCCTCCT	59.667	55.000	20.39	0.00	42.59	3.69
3738	6479	0.253327	AATTCGGGAGGACTTGGCTC	59.747	55.000	0.00	0.00	0.00	4.70
3817	6559	3.848303	AGTTATGTGGGCAATATGGCAT	58.152	40.909	4.88	4.88	45.76	4.40
3826	6568	7.040478	GCTCAAATGATATTAGTTATGTGGGCA	60.040	37.037	0.00	0.00	0.00	5.36
3839	6581	5.271598	TGTGGAAAGGGCTCAAATGATATT	58.728	37.500	0.00	0.00	0.00	1.28
3872	6614	3.374058	CGTGACATTTTATGTGAGGGGAC	59.626	47.826	0.00	0.00	45.03	4.46
3925	6667	2.568696	TTGCTCTCTTCGATCTTCGG	57.431	50.000	0.00	0.00	40.88	4.30

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.