Multiple sequence alignment - TraesCS3A01G167300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G167300 chr3A 100.000 2642 0 0 1 2642 173941316 173943957 0.000000e+00 4879.0
1 TraesCS3A01G167300 chr3A 82.090 134 18 6 2438 2566 198296881 198297013 2.780000e-20 110.0
2 TraesCS3A01G167300 chr3D 95.782 1375 38 9 556 1919 154611998 154613363 0.000000e+00 2200.0
3 TraesCS3A01G167300 chr3D 92.550 698 26 10 1946 2642 154613359 154614031 0.000000e+00 977.0
4 TraesCS3A01G167300 chr3B 94.869 955 34 4 772 1724 226484600 226483659 0.000000e+00 1478.0
5 TraesCS3A01G167300 chr3B 91.063 649 39 7 1996 2642 226483517 226482886 0.000000e+00 859.0
6 TraesCS3A01G167300 chr3B 90.476 231 11 4 556 784 226484844 226484623 7.150000e-76 294.0
7 TraesCS3A01G167300 chr3B 82.286 175 14 10 1840 2010 404830318 404830479 4.590000e-28 135.0
8 TraesCS3A01G167300 chr3B 81.679 131 16 7 2442 2565 556930724 556930595 4.650000e-18 102.0
9 TraesCS3A01G167300 chr5B 88.344 163 18 1 347 508 596969098 596968936 7.460000e-46 195.0
10 TraesCS3A01G167300 chrUn 88.050 159 18 1 347 504 314343010 314342852 1.250000e-43 187.0
11 TraesCS3A01G167300 chrUn 87.421 159 19 1 347 504 425351897 425352055 5.810000e-42 182.0
12 TraesCS3A01G167300 chrUn 86.503 163 21 1 343 504 346576384 346576546 7.510000e-41 178.0
13 TraesCS3A01G167300 chrUn 86.792 159 20 1 347 504 435254369 435254211 2.700000e-40 176.0
14 TraesCS3A01G167300 chr2B 86.826 167 21 1 343 508 48881736 48881902 4.490000e-43 185.0
15 TraesCS3A01G167300 chr2B 84.146 164 14 7 1839 2001 190022891 190023043 5.890000e-32 148.0
16 TraesCS3A01G167300 chr6B 87.421 159 19 1 347 504 568872893 568873051 5.810000e-42 182.0
17 TraesCS3A01G167300 chr6B 82.456 171 17 8 1833 2001 372579765 372579606 1.280000e-28 137.0
18 TraesCS3A01G167300 chr6D 84.211 171 14 8 1833 2001 256728609 256728450 1.270000e-33 154.0
19 TraesCS3A01G167300 chr6D 84.211 171 14 8 1833 2001 256729406 256729247 1.270000e-33 154.0
20 TraesCS3A01G167300 chr6D 82.787 122 16 1 2443 2559 366003606 366003727 1.290000e-18 104.0
21 TraesCS3A01G167300 chr4B 84.756 164 13 7 1839 2001 106227561 106227409 1.270000e-33 154.0
22 TraesCS3A01G167300 chr4B 83.537 164 15 8 1839 2001 544041751 544041903 2.740000e-30 143.0
23 TraesCS3A01G167300 chr2A 83.929 168 14 8 1839 2004 141506318 141506474 5.890000e-32 148.0
24 TraesCS3A01G167300 chr6A 83.140 172 14 10 1833 2001 366029452 366029611 2.740000e-30 143.0
25 TraesCS3A01G167300 chr6A 81.538 130 17 7 2443 2566 75546305 75546177 1.670000e-17 100.0
26 TraesCS3A01G167300 chr4D 84.375 128 11 6 2443 2564 13372861 13372985 1.660000e-22 117.0
27 TraesCS3A01G167300 chr4D 83.333 126 16 4 2443 2564 456266856 456266732 7.730000e-21 111.0
28 TraesCS3A01G167300 chr1A 81.343 134 19 6 2438 2566 415125088 415124956 1.290000e-18 104.0
29 TraesCS3A01G167300 chr7A 84.112 107 10 5 2459 2559 132649217 132649112 2.160000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G167300 chr3A 173941316 173943957 2641 False 4879.0 4879 100.000 1 2642 1 chr3A.!!$F1 2641
1 TraesCS3A01G167300 chr3D 154611998 154614031 2033 False 1588.5 2200 94.166 556 2642 2 chr3D.!!$F1 2086
2 TraesCS3A01G167300 chr3B 226482886 226484844 1958 True 877.0 1478 92.136 556 2642 3 chr3B.!!$R2 2086

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
448 449 0.02811 GCTGAAAACGATCCGATGGC 59.972 55.0 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1706 1752 1.064017 AGCTTGGACCAAAACTCCACA 60.064 47.619 8.59 0.0 37.54 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 4.483476 GTGTTTACACAGATGTCCCAAC 57.517 45.455 8.09 0.00 45.75 3.77
47 48 3.880490 GTGTTTACACAGATGTCCCAACA 59.120 43.478 8.09 0.00 45.75 3.33
48 49 4.518970 GTGTTTACACAGATGTCCCAACAT 59.481 41.667 8.09 0.00 45.96 2.71
49 50 5.703592 GTGTTTACACAGATGTCCCAACATA 59.296 40.000 8.09 0.00 44.72 2.29
50 51 6.205853 GTGTTTACACAGATGTCCCAACATAA 59.794 38.462 8.09 0.00 44.72 1.90
51 52 6.429692 TGTTTACACAGATGTCCCAACATAAG 59.570 38.462 0.00 0.00 46.20 1.73
52 53 4.908601 ACACAGATGTCCCAACATAAGA 57.091 40.909 0.00 0.00 46.20 2.10
53 54 5.241403 ACACAGATGTCCCAACATAAGAA 57.759 39.130 0.00 0.00 46.20 2.52
54 55 5.630121 ACACAGATGTCCCAACATAAGAAA 58.370 37.500 0.00 0.00 46.20 2.52
55 56 5.707298 ACACAGATGTCCCAACATAAGAAAG 59.293 40.000 0.00 0.00 46.20 2.62
56 57 5.939883 CACAGATGTCCCAACATAAGAAAGA 59.060 40.000 0.00 0.00 46.20 2.52
57 58 6.430925 CACAGATGTCCCAACATAAGAAAGAA 59.569 38.462 0.00 0.00 46.20 2.52
58 59 7.004086 ACAGATGTCCCAACATAAGAAAGAAA 58.996 34.615 0.00 0.00 46.20 2.52
59 60 7.505585 ACAGATGTCCCAACATAAGAAAGAAAA 59.494 33.333 0.00 0.00 46.20 2.29
60 61 8.359642 CAGATGTCCCAACATAAGAAAGAAAAA 58.640 33.333 0.00 0.00 46.20 1.94
61 62 9.093458 AGATGTCCCAACATAAGAAAGAAAAAT 57.907 29.630 0.00 0.00 46.20 1.82
64 65 9.137459 TGTCCCAACATAAGAAAGAAAAATACA 57.863 29.630 0.00 0.00 0.00 2.29
65 66 9.974980 GTCCCAACATAAGAAAGAAAAATACAA 57.025 29.630 0.00 0.00 0.00 2.41
79 80 9.691362 AAGAAAAATACAATACATGTGTTGTCC 57.309 29.630 35.07 20.80 41.86 4.02
80 81 8.855110 AGAAAAATACAATACATGTGTTGTCCA 58.145 29.630 35.07 23.47 41.86 4.02
81 82 8.810652 AAAAATACAATACATGTGTTGTCCAC 57.189 30.769 35.07 0.00 41.86 4.02
89 90 3.704381 GTGTTGTCCACACGCAAAA 57.296 47.368 0.00 0.00 46.51 2.44
90 91 1.983972 GTGTTGTCCACACGCAAAAA 58.016 45.000 0.00 0.00 46.51 1.94
91 92 1.917303 GTGTTGTCCACACGCAAAAAG 59.083 47.619 0.00 0.00 46.51 2.27
92 93 1.542030 TGTTGTCCACACGCAAAAAGT 59.458 42.857 0.00 0.00 0.00 2.66
93 94 2.747989 TGTTGTCCACACGCAAAAAGTA 59.252 40.909 0.00 0.00 0.00 2.24
94 95 3.378742 TGTTGTCCACACGCAAAAAGTAT 59.621 39.130 0.00 0.00 0.00 2.12
95 96 4.575236 TGTTGTCCACACGCAAAAAGTATA 59.425 37.500 0.00 0.00 0.00 1.47
96 97 4.735662 TGTCCACACGCAAAAAGTATAC 57.264 40.909 0.00 0.00 0.00 1.47
97 98 4.127907 TGTCCACACGCAAAAAGTATACA 58.872 39.130 5.50 0.00 0.00 2.29
98 99 4.575236 TGTCCACACGCAAAAAGTATACAA 59.425 37.500 5.50 0.00 0.00 2.41
99 100 5.239744 TGTCCACACGCAAAAAGTATACAAT 59.760 36.000 5.50 0.00 0.00 2.71
100 101 5.567534 GTCCACACGCAAAAAGTATACAATG 59.432 40.000 5.50 0.00 0.00 2.82
101 102 5.470437 TCCACACGCAAAAAGTATACAATGA 59.530 36.000 5.50 0.00 0.00 2.57
102 103 6.150307 TCCACACGCAAAAAGTATACAATGAT 59.850 34.615 5.50 0.00 0.00 2.45
103 104 6.806249 CCACACGCAAAAAGTATACAATGATT 59.194 34.615 5.50 0.00 0.00 2.57
104 105 7.328249 CCACACGCAAAAAGTATACAATGATTT 59.672 33.333 5.50 0.00 0.00 2.17
105 106 8.698854 CACACGCAAAAAGTATACAATGATTTT 58.301 29.630 5.50 0.07 0.00 1.82
106 107 8.698854 ACACGCAAAAAGTATACAATGATTTTG 58.301 29.630 5.50 13.52 39.50 2.44
107 108 8.910666 CACGCAAAAAGTATACAATGATTTTGA 58.089 29.630 21.61 0.00 39.08 2.69
108 109 8.911662 ACGCAAAAAGTATACAATGATTTTGAC 58.088 29.630 21.61 15.72 39.08 3.18
109 110 8.095512 CGCAAAAAGTATACAATGATTTTGACG 58.904 33.333 21.61 19.74 39.08 4.35
110 111 8.911662 GCAAAAAGTATACAATGATTTTGACGT 58.088 29.630 21.61 0.00 39.08 4.34
116 117 9.607285 AGTATACAATGATTTTGACGTTTTCAC 57.393 29.630 5.50 0.00 32.26 3.18
117 118 9.388346 GTATACAATGATTTTGACGTTTTCACA 57.612 29.630 0.00 0.00 32.26 3.58
118 119 6.567769 ACAATGATTTTGACGTTTTCACAC 57.432 33.333 0.00 0.00 32.26 3.82
119 120 5.229052 ACAATGATTTTGACGTTTTCACACG 59.771 36.000 0.00 0.00 46.04 4.49
120 121 3.102276 TGATTTTGACGTTTTCACACGC 58.898 40.909 0.00 0.00 44.37 5.34
121 122 1.897641 TTTTGACGTTTTCACACGCC 58.102 45.000 0.00 0.00 44.37 5.68
122 123 0.803117 TTTGACGTTTTCACACGCCA 59.197 45.000 0.00 0.00 44.37 5.69
123 124 0.803117 TTGACGTTTTCACACGCCAA 59.197 45.000 0.00 0.00 44.37 4.52
124 125 0.803117 TGACGTTTTCACACGCCAAA 59.197 45.000 0.00 0.00 44.37 3.28
125 126 1.199327 TGACGTTTTCACACGCCAAAA 59.801 42.857 0.00 0.00 44.37 2.44
126 127 2.251893 GACGTTTTCACACGCCAAAAA 58.748 42.857 0.00 0.00 44.37 1.94
127 128 2.855370 GACGTTTTCACACGCCAAAAAT 59.145 40.909 0.00 0.00 44.37 1.82
128 129 3.254892 ACGTTTTCACACGCCAAAAATT 58.745 36.364 0.00 0.00 44.37 1.82
129 130 4.421948 ACGTTTTCACACGCCAAAAATTA 58.578 34.783 0.00 0.00 44.37 1.40
130 131 4.265792 ACGTTTTCACACGCCAAAAATTAC 59.734 37.500 0.00 0.00 44.37 1.89
131 132 4.265556 CGTTTTCACACGCCAAAAATTACA 59.734 37.500 0.00 0.00 32.43 2.41
132 133 5.485831 GTTTTCACACGCCAAAAATTACAC 58.514 37.500 0.00 0.00 0.00 2.90
133 134 4.371855 TTCACACGCCAAAAATTACACA 57.628 36.364 0.00 0.00 0.00 3.72
134 135 4.576216 TCACACGCCAAAAATTACACAT 57.424 36.364 0.00 0.00 0.00 3.21
135 136 5.690997 TCACACGCCAAAAATTACACATA 57.309 34.783 0.00 0.00 0.00 2.29
136 137 5.694816 TCACACGCCAAAAATTACACATAG 58.305 37.500 0.00 0.00 0.00 2.23
137 138 5.239744 TCACACGCCAAAAATTACACATAGT 59.760 36.000 0.00 0.00 0.00 2.12
138 139 5.567534 CACACGCCAAAAATTACACATAGTC 59.432 40.000 0.00 0.00 0.00 2.59
139 140 4.786068 CACGCCAAAAATTACACATAGTCG 59.214 41.667 0.00 0.00 0.00 4.18
140 141 4.453136 ACGCCAAAAATTACACATAGTCGT 59.547 37.500 0.00 0.00 0.00 4.34
141 142 4.786068 CGCCAAAAATTACACATAGTCGTG 59.214 41.667 0.00 0.00 42.81 4.35
150 151 3.842732 CACATAGTCGTGTGTACTGGA 57.157 47.619 0.00 0.00 43.43 3.86
151 152 4.168922 CACATAGTCGTGTGTACTGGAA 57.831 45.455 0.00 0.00 43.43 3.53
152 153 3.918591 CACATAGTCGTGTGTACTGGAAC 59.081 47.826 0.00 0.00 43.43 3.62
153 154 3.570975 ACATAGTCGTGTGTACTGGAACA 59.429 43.478 0.00 0.00 0.00 3.18
154 155 4.038282 ACATAGTCGTGTGTACTGGAACAA 59.962 41.667 0.00 0.00 38.70 2.83
155 156 3.746045 AGTCGTGTGTACTGGAACAAT 57.254 42.857 0.00 0.00 38.70 2.71
156 157 4.067972 AGTCGTGTGTACTGGAACAATT 57.932 40.909 0.00 0.00 38.70 2.32
157 158 5.204409 AGTCGTGTGTACTGGAACAATTA 57.796 39.130 0.00 0.00 38.70 1.40
158 159 5.790593 AGTCGTGTGTACTGGAACAATTAT 58.209 37.500 0.00 0.00 38.70 1.28
159 160 6.927416 AGTCGTGTGTACTGGAACAATTATA 58.073 36.000 0.00 0.00 38.70 0.98
160 161 7.380536 AGTCGTGTGTACTGGAACAATTATAA 58.619 34.615 0.00 0.00 38.70 0.98
161 162 7.330208 AGTCGTGTGTACTGGAACAATTATAAC 59.670 37.037 0.00 0.00 38.70 1.89
162 163 7.330208 GTCGTGTGTACTGGAACAATTATAACT 59.670 37.037 0.00 0.00 38.70 2.24
163 164 8.522003 TCGTGTGTACTGGAACAATTATAACTA 58.478 33.333 0.00 0.00 38.70 2.24
164 165 9.142515 CGTGTGTACTGGAACAATTATAACTAA 57.857 33.333 0.00 0.00 38.70 2.24
166 167 9.999660 TGTGTACTGGAACAATTATAACTAACA 57.000 29.630 0.00 0.00 38.70 2.41
197 198 9.612620 CAAGAATAAAAATAGAACACACTGACC 57.387 33.333 0.00 0.00 0.00 4.02
198 199 8.918202 AGAATAAAAATAGAACACACTGACCA 57.082 30.769 0.00 0.00 0.00 4.02
199 200 9.520515 AGAATAAAAATAGAACACACTGACCAT 57.479 29.630 0.00 0.00 0.00 3.55
200 201 9.559958 GAATAAAAATAGAACACACTGACCATG 57.440 33.333 0.00 0.00 0.00 3.66
201 202 5.376854 AAAATAGAACACACTGACCATGC 57.623 39.130 0.00 0.00 0.00 4.06
202 203 3.988976 ATAGAACACACTGACCATGCT 57.011 42.857 0.00 0.00 0.00 3.79
203 204 5.420725 AATAGAACACACTGACCATGCTA 57.579 39.130 0.00 0.00 0.00 3.49
204 205 3.045601 AGAACACACTGACCATGCTAC 57.954 47.619 0.00 0.00 0.00 3.58
205 206 2.634940 AGAACACACTGACCATGCTACT 59.365 45.455 0.00 0.00 0.00 2.57
206 207 2.751166 ACACACTGACCATGCTACTC 57.249 50.000 0.00 0.00 0.00 2.59
207 208 2.251818 ACACACTGACCATGCTACTCT 58.748 47.619 0.00 0.00 0.00 3.24
208 209 3.431415 ACACACTGACCATGCTACTCTA 58.569 45.455 0.00 0.00 0.00 2.43
209 210 3.832490 ACACACTGACCATGCTACTCTAA 59.168 43.478 0.00 0.00 0.00 2.10
210 211 4.081972 ACACACTGACCATGCTACTCTAAG 60.082 45.833 0.00 0.00 0.00 2.18
211 212 3.118956 ACACTGACCATGCTACTCTAAGC 60.119 47.826 0.00 0.00 43.08 3.09
212 213 3.131933 CACTGACCATGCTACTCTAAGCT 59.868 47.826 0.00 0.00 43.19 3.74
213 214 3.131933 ACTGACCATGCTACTCTAAGCTG 59.868 47.826 0.00 0.00 43.19 4.24
214 215 3.365472 TGACCATGCTACTCTAAGCTGA 58.635 45.455 0.00 0.00 43.19 4.26
215 216 3.963374 TGACCATGCTACTCTAAGCTGAT 59.037 43.478 0.00 0.00 43.19 2.90
216 217 4.406972 TGACCATGCTACTCTAAGCTGATT 59.593 41.667 0.00 0.00 43.19 2.57
217 218 5.104776 TGACCATGCTACTCTAAGCTGATTT 60.105 40.000 0.00 0.00 43.19 2.17
218 219 6.098266 TGACCATGCTACTCTAAGCTGATTTA 59.902 38.462 0.00 0.00 43.19 1.40
219 220 7.072263 ACCATGCTACTCTAAGCTGATTTAT 57.928 36.000 0.00 0.00 43.19 1.40
220 221 6.933521 ACCATGCTACTCTAAGCTGATTTATG 59.066 38.462 0.00 0.00 43.19 1.90
221 222 6.128336 CCATGCTACTCTAAGCTGATTTATGC 60.128 42.308 0.00 0.00 43.19 3.14
222 223 5.917462 TGCTACTCTAAGCTGATTTATGCA 58.083 37.500 0.00 0.00 43.19 3.96
223 224 6.528321 TGCTACTCTAAGCTGATTTATGCAT 58.472 36.000 3.79 3.79 43.19 3.96
224 225 7.670364 TGCTACTCTAAGCTGATTTATGCATA 58.330 34.615 1.16 1.16 43.19 3.14
225 226 8.150296 TGCTACTCTAAGCTGATTTATGCATAA 58.850 33.333 15.21 15.21 43.19 1.90
226 227 8.993121 GCTACTCTAAGCTGATTTATGCATAAA 58.007 33.333 28.99 28.99 39.50 1.40
228 229 8.159344 ACTCTAAGCTGATTTATGCATAAACC 57.841 34.615 29.32 22.74 35.31 3.27
229 230 7.229506 ACTCTAAGCTGATTTATGCATAAACCC 59.770 37.037 29.32 23.45 35.31 4.11
230 231 5.535753 AAGCTGATTTATGCATAAACCCC 57.464 39.130 29.32 21.44 35.31 4.95
231 232 4.545678 AGCTGATTTATGCATAAACCCCA 58.454 39.130 29.32 23.97 35.31 4.96
232 233 4.961730 AGCTGATTTATGCATAAACCCCAA 59.038 37.500 29.32 10.87 35.31 4.12
233 234 5.069516 AGCTGATTTATGCATAAACCCCAAG 59.930 40.000 29.32 21.66 35.31 3.61
234 235 5.275067 TGATTTATGCATAAACCCCAAGC 57.725 39.130 29.32 13.19 35.31 4.01
235 236 4.100808 TGATTTATGCATAAACCCCAAGCC 59.899 41.667 29.32 13.68 35.31 4.35
236 237 3.396685 TTATGCATAAACCCCAAGCCT 57.603 42.857 16.78 0.00 0.00 4.58
237 238 2.252535 ATGCATAAACCCCAAGCCTT 57.747 45.000 0.00 0.00 0.00 4.35
238 239 2.022718 TGCATAAACCCCAAGCCTTT 57.977 45.000 0.00 0.00 0.00 3.11
239 240 2.334023 TGCATAAACCCCAAGCCTTTT 58.666 42.857 0.00 0.00 0.00 2.27
240 241 2.301583 TGCATAAACCCCAAGCCTTTTC 59.698 45.455 0.00 0.00 0.00 2.29
241 242 2.567169 GCATAAACCCCAAGCCTTTTCT 59.433 45.455 0.00 0.00 0.00 2.52
242 243 3.007940 GCATAAACCCCAAGCCTTTTCTT 59.992 43.478 0.00 0.00 0.00 2.52
243 244 4.221924 GCATAAACCCCAAGCCTTTTCTTA 59.778 41.667 0.00 0.00 0.00 2.10
244 245 5.624509 GCATAAACCCCAAGCCTTTTCTTAG 60.625 44.000 0.00 0.00 0.00 2.18
245 246 3.895704 AACCCCAAGCCTTTTCTTAGA 57.104 42.857 0.00 0.00 0.00 2.10
246 247 3.156288 ACCCCAAGCCTTTTCTTAGAC 57.844 47.619 0.00 0.00 0.00 2.59
247 248 2.716969 ACCCCAAGCCTTTTCTTAGACT 59.283 45.455 0.00 0.00 0.00 3.24
248 249 3.914435 ACCCCAAGCCTTTTCTTAGACTA 59.086 43.478 0.00 0.00 0.00 2.59
249 250 4.540502 ACCCCAAGCCTTTTCTTAGACTAT 59.459 41.667 0.00 0.00 0.00 2.12
250 251 5.015284 ACCCCAAGCCTTTTCTTAGACTATT 59.985 40.000 0.00 0.00 0.00 1.73
251 252 5.590663 CCCCAAGCCTTTTCTTAGACTATTC 59.409 44.000 0.00 0.00 0.00 1.75
252 253 6.180472 CCCAAGCCTTTTCTTAGACTATTCA 58.820 40.000 0.00 0.00 0.00 2.57
253 254 6.317391 CCCAAGCCTTTTCTTAGACTATTCAG 59.683 42.308 0.00 0.00 0.00 3.02
254 255 6.881602 CCAAGCCTTTTCTTAGACTATTCAGT 59.118 38.462 0.00 0.00 37.87 3.41
255 256 7.148340 CCAAGCCTTTTCTTAGACTATTCAGTG 60.148 40.741 0.00 0.00 34.21 3.66
256 257 7.246171 AGCCTTTTCTTAGACTATTCAGTGA 57.754 36.000 0.00 0.00 34.21 3.41
257 258 7.680730 AGCCTTTTCTTAGACTATTCAGTGAA 58.319 34.615 8.27 8.27 34.21 3.18
258 259 8.325046 AGCCTTTTCTTAGACTATTCAGTGAAT 58.675 33.333 21.57 21.57 34.21 2.57
259 260 8.394121 GCCTTTTCTTAGACTATTCAGTGAATG 58.606 37.037 25.48 17.64 34.21 2.67
260 261 9.658799 CCTTTTCTTAGACTATTCAGTGAATGA 57.341 33.333 25.48 11.29 34.21 2.57
273 274 7.389803 TTCAGTGAATGAAGTCAAACAGAAA 57.610 32.000 0.08 0.00 43.09 2.52
274 275 7.019774 TCAGTGAATGAAGTCAAACAGAAAG 57.980 36.000 0.00 0.00 34.02 2.62
275 276 5.684626 CAGTGAATGAAGTCAAACAGAAAGC 59.315 40.000 0.00 0.00 0.00 3.51
276 277 4.978580 GTGAATGAAGTCAAACAGAAAGCC 59.021 41.667 0.00 0.00 0.00 4.35
277 278 4.037923 TGAATGAAGTCAAACAGAAAGCCC 59.962 41.667 0.00 0.00 0.00 5.19
278 279 3.011566 TGAAGTCAAACAGAAAGCCCA 57.988 42.857 0.00 0.00 0.00 5.36
279 280 3.360867 TGAAGTCAAACAGAAAGCCCAA 58.639 40.909 0.00 0.00 0.00 4.12
280 281 3.130340 TGAAGTCAAACAGAAAGCCCAAC 59.870 43.478 0.00 0.00 0.00 3.77
281 282 2.733956 AGTCAAACAGAAAGCCCAACA 58.266 42.857 0.00 0.00 0.00 3.33
282 283 3.096092 AGTCAAACAGAAAGCCCAACAA 58.904 40.909 0.00 0.00 0.00 2.83
283 284 3.513515 AGTCAAACAGAAAGCCCAACAAA 59.486 39.130 0.00 0.00 0.00 2.83
284 285 3.616821 GTCAAACAGAAAGCCCAACAAAC 59.383 43.478 0.00 0.00 0.00 2.93
285 286 3.259374 TCAAACAGAAAGCCCAACAAACA 59.741 39.130 0.00 0.00 0.00 2.83
286 287 3.525268 AACAGAAAGCCCAACAAACAG 57.475 42.857 0.00 0.00 0.00 3.16
287 288 2.733956 ACAGAAAGCCCAACAAACAGA 58.266 42.857 0.00 0.00 0.00 3.41
288 289 2.427095 ACAGAAAGCCCAACAAACAGAC 59.573 45.455 0.00 0.00 0.00 3.51
289 290 2.426738 CAGAAAGCCCAACAAACAGACA 59.573 45.455 0.00 0.00 0.00 3.41
290 291 3.096092 AGAAAGCCCAACAAACAGACAA 58.904 40.909 0.00 0.00 0.00 3.18
291 292 3.131046 AGAAAGCCCAACAAACAGACAAG 59.869 43.478 0.00 0.00 0.00 3.16
292 293 1.402787 AGCCCAACAAACAGACAAGG 58.597 50.000 0.00 0.00 0.00 3.61
293 294 1.064017 AGCCCAACAAACAGACAAGGA 60.064 47.619 0.00 0.00 0.00 3.36
294 295 1.754226 GCCCAACAAACAGACAAGGAA 59.246 47.619 0.00 0.00 0.00 3.36
295 296 2.223805 GCCCAACAAACAGACAAGGAAG 60.224 50.000 0.00 0.00 0.00 3.46
296 297 2.223805 CCCAACAAACAGACAAGGAAGC 60.224 50.000 0.00 0.00 0.00 3.86
297 298 2.223805 CCAACAAACAGACAAGGAAGCC 60.224 50.000 0.00 0.00 0.00 4.35
298 299 2.426738 CAACAAACAGACAAGGAAGCCA 59.573 45.455 0.00 0.00 0.00 4.75
299 300 2.024414 ACAAACAGACAAGGAAGCCAC 58.976 47.619 0.00 0.00 0.00 5.01
300 301 2.023673 CAAACAGACAAGGAAGCCACA 58.976 47.619 0.00 0.00 0.00 4.17
301 302 2.426738 CAAACAGACAAGGAAGCCACAA 59.573 45.455 0.00 0.00 0.00 3.33
302 303 1.680338 ACAGACAAGGAAGCCACAAC 58.320 50.000 0.00 0.00 0.00 3.32
303 304 0.954452 CAGACAAGGAAGCCACAACC 59.046 55.000 0.00 0.00 0.00 3.77
304 305 0.178990 AGACAAGGAAGCCACAACCC 60.179 55.000 0.00 0.00 0.00 4.11
305 306 1.152546 ACAAGGAAGCCACAACCCC 60.153 57.895 0.00 0.00 0.00 4.95
306 307 1.908299 CAAGGAAGCCACAACCCCC 60.908 63.158 0.00 0.00 0.00 5.40
307 308 2.399607 AAGGAAGCCACAACCCCCA 61.400 57.895 0.00 0.00 0.00 4.96
308 309 2.600470 GGAAGCCACAACCCCCAC 60.600 66.667 0.00 0.00 0.00 4.61
309 310 2.600470 GAAGCCACAACCCCCACC 60.600 66.667 0.00 0.00 0.00 4.61
310 311 3.110031 AAGCCACAACCCCCACCT 61.110 61.111 0.00 0.00 0.00 4.00
311 312 2.656698 GAAGCCACAACCCCCACCTT 62.657 60.000 0.00 0.00 0.00 3.50
312 313 2.123033 GCCACAACCCCCACCTTT 60.123 61.111 0.00 0.00 0.00 3.11
313 314 2.506957 GCCACAACCCCCACCTTTG 61.507 63.158 0.00 0.00 0.00 2.77
314 315 1.836604 CCACAACCCCCACCTTTGG 60.837 63.158 0.00 0.00 43.50 3.28
322 323 2.201210 CCACCTTTGGGCCCAACT 59.799 61.111 37.33 19.18 39.57 3.16
323 324 1.908299 CCACCTTTGGGCCCAACTC 60.908 63.158 37.33 2.06 39.57 3.01
324 325 1.152567 CACCTTTGGGCCCAACTCA 60.153 57.895 37.33 21.74 35.46 3.41
325 326 0.542702 CACCTTTGGGCCCAACTCAT 60.543 55.000 37.33 19.48 35.46 2.90
326 327 0.251787 ACCTTTGGGCCCAACTCATC 60.252 55.000 37.33 0.00 35.46 2.92
327 328 1.315257 CCTTTGGGCCCAACTCATCG 61.315 60.000 37.33 19.02 35.46 3.84
328 329 1.937546 CTTTGGGCCCAACTCATCGC 61.938 60.000 37.33 0.00 35.46 4.58
329 330 4.776322 TGGGCCCAACTCATCGCG 62.776 66.667 26.33 0.00 0.00 5.87
330 331 4.778143 GGGCCCAACTCATCGCGT 62.778 66.667 19.95 0.00 0.00 6.01
331 332 2.185867 GGCCCAACTCATCGCGTA 59.814 61.111 5.77 0.00 0.00 4.42
332 333 1.448893 GGCCCAACTCATCGCGTAA 60.449 57.895 5.77 0.00 0.00 3.18
333 334 1.429148 GGCCCAACTCATCGCGTAAG 61.429 60.000 5.77 4.74 43.44 2.34
346 347 1.226888 CGTAAGCCGGTCCTACAGC 60.227 63.158 1.90 0.00 0.00 4.40
347 348 1.143401 GTAAGCCGGTCCTACAGCC 59.857 63.158 1.90 0.00 0.00 4.85
348 349 1.305465 TAAGCCGGTCCTACAGCCA 60.305 57.895 1.90 0.00 0.00 4.75
349 350 0.905809 TAAGCCGGTCCTACAGCCAA 60.906 55.000 1.90 0.00 0.00 4.52
350 351 1.774894 AAGCCGGTCCTACAGCCAAA 61.775 55.000 1.90 0.00 0.00 3.28
351 352 1.302993 GCCGGTCCTACAGCCAAAA 60.303 57.895 1.90 0.00 0.00 2.44
352 353 0.891904 GCCGGTCCTACAGCCAAAAA 60.892 55.000 1.90 0.00 0.00 1.94
369 370 2.485266 AAAAGAAAAGACAACGGCCG 57.515 45.000 26.86 26.86 0.00 6.13
370 371 0.666374 AAAGAAAAGACAACGGCCGG 59.334 50.000 31.76 15.62 0.00 6.13
371 372 0.464916 AAGAAAAGACAACGGCCGGT 60.465 50.000 31.76 23.68 0.00 5.28
372 373 0.883370 AGAAAAGACAACGGCCGGTC 60.883 55.000 31.76 26.42 0.00 4.79
373 374 1.153127 AAAAGACAACGGCCGGTCA 60.153 52.632 31.76 0.00 36.50 4.02
374 375 1.441732 AAAAGACAACGGCCGGTCAC 61.442 55.000 31.76 18.96 36.50 3.67
375 376 2.596553 AAAGACAACGGCCGGTCACA 62.597 55.000 31.76 0.00 36.50 3.58
376 377 3.343421 GACAACGGCCGGTCACAC 61.343 66.667 31.76 9.94 34.22 3.82
377 378 4.922026 ACAACGGCCGGTCACACC 62.922 66.667 31.76 0.00 34.05 4.16
387 388 4.016706 GTCACACCCCCGGGACAG 62.017 72.222 26.32 13.29 38.96 3.51
393 394 4.900259 CCCCCGGGACAGGCCTAT 62.900 72.222 26.32 0.00 37.50 2.57
394 395 2.203182 CCCCGGGACAGGCCTATA 59.797 66.667 26.32 0.00 36.66 1.31
395 396 2.214920 CCCCGGGACAGGCCTATAC 61.215 68.421 26.32 0.00 36.66 1.47
396 397 2.571216 CCCGGGACAGGCCTATACG 61.571 68.421 18.48 8.22 36.66 3.06
397 398 1.529948 CCGGGACAGGCCTATACGA 60.530 63.158 3.98 0.00 36.66 3.43
398 399 1.658673 CGGGACAGGCCTATACGAC 59.341 63.158 3.98 0.00 36.66 4.34
399 400 1.105167 CGGGACAGGCCTATACGACA 61.105 60.000 3.98 0.00 36.66 4.35
400 401 1.339097 GGGACAGGCCTATACGACAT 58.661 55.000 3.98 0.00 36.66 3.06
401 402 2.522185 GGGACAGGCCTATACGACATA 58.478 52.381 3.98 0.00 36.66 2.29
402 403 2.895404 GGGACAGGCCTATACGACATAA 59.105 50.000 3.98 0.00 36.66 1.90
403 404 3.056749 GGGACAGGCCTATACGACATAAG 60.057 52.174 3.98 0.00 36.66 1.73
404 405 3.576648 GACAGGCCTATACGACATAAGC 58.423 50.000 3.98 0.00 0.00 3.09
405 406 2.299297 ACAGGCCTATACGACATAAGCC 59.701 50.000 3.98 11.25 39.25 4.35
406 407 2.299013 CAGGCCTATACGACATAAGCCA 59.701 50.000 3.98 0.00 41.45 4.75
407 408 2.299297 AGGCCTATACGACATAAGCCAC 59.701 50.000 1.29 0.32 41.45 5.01
408 409 2.325761 GCCTATACGACATAAGCCACG 58.674 52.381 0.00 0.00 0.00 4.94
409 410 2.030540 GCCTATACGACATAAGCCACGA 60.031 50.000 0.00 0.00 0.00 4.35
410 411 3.562505 CCTATACGACATAAGCCACGAC 58.437 50.000 0.00 0.00 0.00 4.34
411 412 2.503920 ATACGACATAAGCCACGACC 57.496 50.000 0.00 0.00 0.00 4.79
412 413 1.466856 TACGACATAAGCCACGACCT 58.533 50.000 0.00 0.00 0.00 3.85
413 414 0.172803 ACGACATAAGCCACGACCTC 59.827 55.000 0.00 0.00 0.00 3.85
414 415 0.172578 CGACATAAGCCACGACCTCA 59.827 55.000 0.00 0.00 0.00 3.86
415 416 1.202417 CGACATAAGCCACGACCTCAT 60.202 52.381 0.00 0.00 0.00 2.90
416 417 2.034179 CGACATAAGCCACGACCTCATA 59.966 50.000 0.00 0.00 0.00 2.15
417 418 3.490249 CGACATAAGCCACGACCTCATAA 60.490 47.826 0.00 0.00 0.00 1.90
418 419 3.793559 ACATAAGCCACGACCTCATAAC 58.206 45.455 0.00 0.00 0.00 1.89
419 420 3.196901 ACATAAGCCACGACCTCATAACA 59.803 43.478 0.00 0.00 0.00 2.41
420 421 2.851263 AAGCCACGACCTCATAACAA 57.149 45.000 0.00 0.00 0.00 2.83
421 422 2.851263 AGCCACGACCTCATAACAAA 57.149 45.000 0.00 0.00 0.00 2.83
422 423 3.350219 AGCCACGACCTCATAACAAAT 57.650 42.857 0.00 0.00 0.00 2.32
423 424 3.270877 AGCCACGACCTCATAACAAATC 58.729 45.455 0.00 0.00 0.00 2.17
424 425 3.055094 AGCCACGACCTCATAACAAATCT 60.055 43.478 0.00 0.00 0.00 2.40
425 426 4.161565 AGCCACGACCTCATAACAAATCTA 59.838 41.667 0.00 0.00 0.00 1.98
426 427 4.873827 GCCACGACCTCATAACAAATCTAA 59.126 41.667 0.00 0.00 0.00 2.10
427 428 5.353123 GCCACGACCTCATAACAAATCTAAA 59.647 40.000 0.00 0.00 0.00 1.85
428 429 6.128117 GCCACGACCTCATAACAAATCTAAAA 60.128 38.462 0.00 0.00 0.00 1.52
429 430 7.464358 CCACGACCTCATAACAAATCTAAAAG 58.536 38.462 0.00 0.00 0.00 2.27
430 431 6.961554 CACGACCTCATAACAAATCTAAAAGC 59.038 38.462 0.00 0.00 0.00 3.51
431 432 6.879458 ACGACCTCATAACAAATCTAAAAGCT 59.121 34.615 0.00 0.00 0.00 3.74
432 433 7.148407 ACGACCTCATAACAAATCTAAAAGCTG 60.148 37.037 0.00 0.00 0.00 4.24
433 434 7.064609 CGACCTCATAACAAATCTAAAAGCTGA 59.935 37.037 0.00 0.00 0.00 4.26
434 435 8.635765 ACCTCATAACAAATCTAAAAGCTGAA 57.364 30.769 0.00 0.00 0.00 3.02
435 436 9.077885 ACCTCATAACAAATCTAAAAGCTGAAA 57.922 29.630 0.00 0.00 0.00 2.69
436 437 9.912634 CCTCATAACAAATCTAAAAGCTGAAAA 57.087 29.630 0.00 0.00 0.00 2.29
438 439 9.393249 TCATAACAAATCTAAAAGCTGAAAACG 57.607 29.630 0.00 0.00 0.00 3.60
439 440 9.393249 CATAACAAATCTAAAAGCTGAAAACGA 57.607 29.630 0.00 0.00 0.00 3.85
441 442 8.507470 AACAAATCTAAAAGCTGAAAACGATC 57.493 30.769 0.00 0.00 0.00 3.69
442 443 7.084486 ACAAATCTAAAAGCTGAAAACGATCC 58.916 34.615 0.00 0.00 0.00 3.36
443 444 4.921470 TCTAAAAGCTGAAAACGATCCG 57.079 40.909 0.00 0.00 0.00 4.18
444 445 4.562082 TCTAAAAGCTGAAAACGATCCGA 58.438 39.130 0.00 0.00 0.00 4.55
445 446 5.175859 TCTAAAAGCTGAAAACGATCCGAT 58.824 37.500 0.00 0.00 0.00 4.18
446 447 3.747099 AAAGCTGAAAACGATCCGATG 57.253 42.857 0.00 0.00 0.00 3.84
447 448 1.656652 AGCTGAAAACGATCCGATGG 58.343 50.000 0.00 0.00 0.00 3.51
448 449 0.028110 GCTGAAAACGATCCGATGGC 59.972 55.000 0.00 0.00 0.00 4.40
449 450 0.657840 CTGAAAACGATCCGATGGCC 59.342 55.000 0.00 0.00 0.00 5.36
450 451 0.035915 TGAAAACGATCCGATGGCCA 60.036 50.000 8.56 8.56 0.00 5.36
451 452 0.657840 GAAAACGATCCGATGGCCAG 59.342 55.000 13.05 0.00 0.00 4.85
452 453 0.251916 AAAACGATCCGATGGCCAGA 59.748 50.000 13.05 2.99 0.00 3.86
453 454 0.462047 AAACGATCCGATGGCCAGAC 60.462 55.000 13.05 7.15 0.00 3.51
454 455 1.613317 AACGATCCGATGGCCAGACA 61.613 55.000 13.05 0.00 0.00 3.41
455 456 1.592669 CGATCCGATGGCCAGACAC 60.593 63.158 13.05 1.54 0.00 3.67
456 457 1.592669 GATCCGATGGCCAGACACG 60.593 63.158 13.05 13.96 0.00 4.49
457 458 2.298158 GATCCGATGGCCAGACACGT 62.298 60.000 13.05 0.00 0.00 4.49
458 459 2.298158 ATCCGATGGCCAGACACGTC 62.298 60.000 13.05 0.79 0.00 4.34
459 460 2.880879 CGATGGCCAGACACGTCG 60.881 66.667 13.05 11.03 39.38 5.12
460 461 2.571757 GATGGCCAGACACGTCGA 59.428 61.111 13.05 0.00 34.09 4.20
461 462 1.805945 GATGGCCAGACACGTCGAC 60.806 63.158 13.05 5.18 34.09 4.20
462 463 2.214181 GATGGCCAGACACGTCGACT 62.214 60.000 13.05 0.00 34.09 4.18
463 464 2.430921 GGCCAGACACGTCGACTG 60.431 66.667 14.70 12.99 37.18 3.51
464 465 2.643272 GCCAGACACGTCGACTGA 59.357 61.111 14.70 0.00 39.43 3.41
465 466 1.442857 GCCAGACACGTCGACTGAG 60.443 63.158 14.70 8.45 39.43 3.35
466 467 1.853114 GCCAGACACGTCGACTGAGA 61.853 60.000 14.70 0.00 39.43 3.27
467 468 0.110147 CCAGACACGTCGACTGAGAC 60.110 60.000 14.70 6.60 39.43 3.36
468 469 0.869068 CAGACACGTCGACTGAGACT 59.131 55.000 14.70 8.63 39.43 3.24
469 470 1.264557 CAGACACGTCGACTGAGACTT 59.735 52.381 14.70 0.00 39.43 3.01
470 471 1.532007 AGACACGTCGACTGAGACTTC 59.468 52.381 14.70 4.62 38.90 3.01
471 472 1.263484 GACACGTCGACTGAGACTTCA 59.737 52.381 14.70 0.00 38.90 3.02
472 473 1.880675 ACACGTCGACTGAGACTTCAT 59.119 47.619 14.70 0.00 38.90 2.57
473 474 2.293677 ACACGTCGACTGAGACTTCATT 59.706 45.455 14.70 0.00 38.90 2.57
474 475 3.501062 ACACGTCGACTGAGACTTCATTA 59.499 43.478 14.70 0.00 38.90 1.90
475 476 4.092120 CACGTCGACTGAGACTTCATTAG 58.908 47.826 14.70 0.00 38.90 1.73
476 477 4.001652 ACGTCGACTGAGACTTCATTAGA 58.998 43.478 14.70 0.00 38.90 2.10
477 478 4.454847 ACGTCGACTGAGACTTCATTAGAA 59.545 41.667 14.70 0.00 38.90 2.10
478 479 4.789119 CGTCGACTGAGACTTCATTAGAAC 59.211 45.833 14.70 0.00 38.90 3.01
479 480 5.391097 CGTCGACTGAGACTTCATTAGAACT 60.391 44.000 14.70 0.00 38.90 3.01
480 481 6.025280 GTCGACTGAGACTTCATTAGAACTC 58.975 44.000 8.70 0.00 38.09 3.01
481 482 5.705905 TCGACTGAGACTTCATTAGAACTCA 59.294 40.000 0.00 0.00 37.93 3.41
485 486 5.944013 TGAGACTTCATTAGAACTCAGTCG 58.056 41.667 0.00 0.00 36.63 4.18
486 487 5.106118 TGAGACTTCATTAGAACTCAGTCGG 60.106 44.000 0.00 0.00 36.63 4.79
487 488 3.851098 ACTTCATTAGAACTCAGTCGGC 58.149 45.455 0.00 0.00 0.00 5.54
488 489 3.511934 ACTTCATTAGAACTCAGTCGGCT 59.488 43.478 0.00 0.00 0.00 5.52
489 490 3.510388 TCATTAGAACTCAGTCGGCTG 57.490 47.619 11.77 11.77 43.87 4.85
499 500 1.999735 TCAGTCGGCTGATTTTTAGCG 59.000 47.619 17.42 0.00 45.94 4.26
500 501 1.732259 CAGTCGGCTGATTTTTAGCGT 59.268 47.619 12.86 0.00 45.28 5.07
501 502 2.927477 CAGTCGGCTGATTTTTAGCGTA 59.073 45.455 12.86 0.00 45.28 4.42
502 503 3.555956 CAGTCGGCTGATTTTTAGCGTAT 59.444 43.478 12.86 0.00 45.28 3.06
503 504 3.802685 AGTCGGCTGATTTTTAGCGTATC 59.197 43.478 0.00 0.00 42.03 2.24
504 505 3.802685 GTCGGCTGATTTTTAGCGTATCT 59.197 43.478 0.00 0.00 42.03 1.98
505 506 3.802139 TCGGCTGATTTTTAGCGTATCTG 59.198 43.478 0.00 0.00 42.03 2.90
506 507 3.555956 CGGCTGATTTTTAGCGTATCTGT 59.444 43.478 0.00 0.00 42.03 3.41
507 508 4.034048 CGGCTGATTTTTAGCGTATCTGTT 59.966 41.667 0.00 0.00 42.03 3.16
508 509 5.447279 CGGCTGATTTTTAGCGTATCTGTTT 60.447 40.000 0.00 0.00 42.03 2.83
509 510 5.739161 GGCTGATTTTTAGCGTATCTGTTTG 59.261 40.000 0.00 0.00 42.03 2.93
510 511 5.228012 GCTGATTTTTAGCGTATCTGTTTGC 59.772 40.000 0.00 0.00 0.00 3.68
511 512 5.320723 TGATTTTTAGCGTATCTGTTTGCG 58.679 37.500 0.00 0.00 0.00 4.85
512 513 3.733024 TTTTAGCGTATCTGTTTGCGG 57.267 42.857 0.00 0.00 0.00 5.69
513 514 2.658373 TTAGCGTATCTGTTTGCGGA 57.342 45.000 0.00 0.00 0.00 5.54
514 515 2.882927 TAGCGTATCTGTTTGCGGAT 57.117 45.000 0.00 0.00 42.86 4.18
515 516 2.882927 AGCGTATCTGTTTGCGGATA 57.117 45.000 0.00 0.00 40.85 2.59
516 517 3.386768 AGCGTATCTGTTTGCGGATAT 57.613 42.857 0.27 0.00 42.84 1.63
517 518 4.514781 AGCGTATCTGTTTGCGGATATA 57.485 40.909 0.27 0.00 42.84 0.86
518 519 4.235360 AGCGTATCTGTTTGCGGATATAC 58.765 43.478 0.27 0.00 42.84 1.47
519 520 3.059044 GCGTATCTGTTTGCGGATATACG 59.941 47.826 1.93 1.93 42.84 3.06
520 521 4.224433 CGTATCTGTTTGCGGATATACGT 58.776 43.478 9.53 0.00 42.84 3.57
521 522 4.678287 CGTATCTGTTTGCGGATATACGTT 59.322 41.667 9.53 0.00 42.84 3.99
522 523 5.852755 CGTATCTGTTTGCGGATATACGTTA 59.147 40.000 9.53 0.00 42.84 3.18
523 524 6.360414 CGTATCTGTTTGCGGATATACGTTAA 59.640 38.462 9.53 2.15 42.84 2.01
524 525 7.061441 CGTATCTGTTTGCGGATATACGTTAAT 59.939 37.037 9.53 0.00 42.84 1.40
525 526 6.519353 TCTGTTTGCGGATATACGTTAATG 57.481 37.500 9.53 0.00 35.98 1.90
526 527 5.464057 TCTGTTTGCGGATATACGTTAATGG 59.536 40.000 9.53 1.94 35.98 3.16
527 528 4.512198 TGTTTGCGGATATACGTTAATGGG 59.488 41.667 9.53 0.00 35.98 4.00
528 529 2.690786 TGCGGATATACGTTAATGGGC 58.309 47.619 9.53 0.00 35.98 5.36
529 530 2.037381 TGCGGATATACGTTAATGGGCA 59.963 45.455 9.53 0.00 35.98 5.36
530 531 2.414138 GCGGATATACGTTAATGGGCAC 59.586 50.000 9.53 0.00 35.98 5.01
531 532 3.655486 CGGATATACGTTAATGGGCACA 58.345 45.455 0.00 0.00 0.00 4.57
532 533 4.250464 CGGATATACGTTAATGGGCACAT 58.750 43.478 0.00 0.00 39.54 3.21
533 534 4.092821 CGGATATACGTTAATGGGCACATG 59.907 45.833 0.00 0.00 37.40 3.21
534 535 4.142687 GGATATACGTTAATGGGCACATGC 60.143 45.833 0.00 0.00 37.40 4.06
535 536 2.115343 TACGTTAATGGGCACATGCA 57.885 45.000 0.00 0.00 44.36 3.96
536 537 1.252175 ACGTTAATGGGCACATGCAA 58.748 45.000 0.00 0.00 44.36 4.08
537 538 1.067915 ACGTTAATGGGCACATGCAAC 60.068 47.619 0.00 9.42 44.36 4.17
538 539 1.627879 GTTAATGGGCACATGCAACG 58.372 50.000 0.00 0.00 44.36 4.10
539 540 1.067915 GTTAATGGGCACATGCAACGT 60.068 47.619 0.00 0.00 44.36 3.99
540 541 0.808125 TAATGGGCACATGCAACGTC 59.192 50.000 0.00 0.00 44.36 4.34
541 542 1.177895 AATGGGCACATGCAACGTCA 61.178 50.000 0.00 0.00 44.36 4.35
542 543 1.177895 ATGGGCACATGCAACGTCAA 61.178 50.000 0.00 0.00 44.36 3.18
543 544 1.361993 GGGCACATGCAACGTCAAA 59.638 52.632 6.15 0.00 44.36 2.69
544 545 0.038343 GGGCACATGCAACGTCAAAT 60.038 50.000 6.15 0.00 44.36 2.32
545 546 1.201181 GGGCACATGCAACGTCAAATA 59.799 47.619 6.15 0.00 44.36 1.40
546 547 2.518949 GGCACATGCAACGTCAAATAG 58.481 47.619 6.15 0.00 44.36 1.73
547 548 2.518949 GCACATGCAACGTCAAATAGG 58.481 47.619 0.00 0.00 41.59 2.57
548 549 2.161410 GCACATGCAACGTCAAATAGGA 59.839 45.455 0.00 0.00 41.59 2.94
549 550 3.181497 GCACATGCAACGTCAAATAGGAT 60.181 43.478 0.00 0.00 41.59 3.24
550 551 4.675146 GCACATGCAACGTCAAATAGGATT 60.675 41.667 0.00 0.00 41.59 3.01
551 552 5.030295 CACATGCAACGTCAAATAGGATTC 58.970 41.667 0.00 0.00 0.00 2.52
552 553 4.201812 ACATGCAACGTCAAATAGGATTCG 60.202 41.667 0.00 0.00 0.00 3.34
553 554 3.331150 TGCAACGTCAAATAGGATTCGT 58.669 40.909 0.00 0.00 0.00 3.85
554 555 3.369756 TGCAACGTCAAATAGGATTCGTC 59.630 43.478 0.00 0.00 0.00 4.20
566 567 8.768955 CAAATAGGATTCGTCTTCCTTTGATAG 58.231 37.037 8.45 0.00 40.84 2.08
588 589 3.225104 GCTCTTCCATATGCCCATTTCA 58.775 45.455 0.00 0.00 0.00 2.69
670 673 3.191162 CGGCAGAACCATTGATTCTTGAA 59.809 43.478 0.00 0.00 39.03 2.69
671 674 4.142315 CGGCAGAACCATTGATTCTTGAAT 60.142 41.667 0.00 0.00 39.03 2.57
672 675 5.346522 GGCAGAACCATTGATTCTTGAATC 58.653 41.667 14.45 14.45 38.86 2.52
673 676 5.126707 GGCAGAACCATTGATTCTTGAATCT 59.873 40.000 19.91 3.39 38.86 2.40
674 677 6.350780 GGCAGAACCATTGATTCTTGAATCTT 60.351 38.462 19.91 8.90 38.86 2.40
675 678 6.530534 GCAGAACCATTGATTCTTGAATCTTG 59.469 38.462 19.91 16.76 34.08 3.02
676 679 7.576287 GCAGAACCATTGATTCTTGAATCTTGA 60.576 37.037 19.91 9.68 34.08 3.02
707 710 6.024552 TCATCCCACAAAGCAATTTTAGTC 57.975 37.500 0.00 0.00 0.00 2.59
961 1007 4.263771 ACCCCTGTAATTAACCTCCACAAG 60.264 45.833 0.00 0.00 0.00 3.16
987 1033 2.276472 GCAGAAGCACACACACAAAA 57.724 45.000 0.00 0.00 41.58 2.44
1106 1152 2.125512 CTCCTCCAAGAACCGCGG 60.126 66.667 26.86 26.86 0.00 6.46
1173 1219 4.083862 GCCCACGTCCTGGAGGTC 62.084 72.222 18.52 5.14 43.95 3.85
1668 1714 5.127845 CCTATGCACCGAGTGGAGAATATAT 59.872 44.000 0.00 0.00 37.30 0.86
1808 1877 7.273381 ACTTTTCAATGTCTCAAAAGAAACACG 59.727 33.333 10.55 0.00 38.77 4.49
1823 1892 5.821204 AGAAACACGAACTTTTCATGAAGG 58.179 37.500 8.41 8.39 34.68 3.46
1830 1899 5.236478 ACGAACTTTTCATGAAGGTACAGTG 59.764 40.000 8.41 0.00 0.00 3.66
1850 1919 7.219322 ACAGTGTTAAAAATACTCCCTACGTT 58.781 34.615 0.00 0.00 29.72 3.99
1917 1986 7.813852 ATACAGACTAAATGAGTGAACGAAC 57.186 36.000 0.00 0.00 39.06 3.95
1918 1987 5.597806 ACAGACTAAATGAGTGAACGAACA 58.402 37.500 0.00 0.00 39.06 3.18
1919 1988 5.462398 ACAGACTAAATGAGTGAACGAACAC 59.538 40.000 8.22 8.22 39.06 3.32
1920 1989 5.462068 CAGACTAAATGAGTGAACGAACACA 59.538 40.000 15.83 5.27 42.45 3.72
1921 1990 5.462398 AGACTAAATGAGTGAACGAACACAC 59.538 40.000 15.83 11.41 42.45 3.82
1923 1992 6.509656 ACTAAATGAGTGAACGAACACACTA 58.490 36.000 15.83 5.34 45.54 2.74
1924 1993 5.907197 AAATGAGTGAACGAACACACTAG 57.093 39.130 15.83 0.00 45.54 2.57
1925 1994 4.848562 ATGAGTGAACGAACACACTAGA 57.151 40.909 15.83 5.26 45.54 2.43
1926 1995 4.642445 TGAGTGAACGAACACACTAGAA 57.358 40.909 15.83 2.45 45.54 2.10
1927 1996 4.357142 TGAGTGAACGAACACACTAGAAC 58.643 43.478 15.83 3.83 45.54 3.01
1928 1997 3.369385 AGTGAACGAACACACTAGAACG 58.631 45.455 15.83 0.00 44.06 3.95
1929 1998 3.111098 GTGAACGAACACACTAGAACGT 58.889 45.455 0.00 0.00 40.11 3.99
1930 1999 4.035558 AGTGAACGAACACACTAGAACGTA 59.964 41.667 15.83 0.00 44.06 3.57
1931 2000 4.145414 GTGAACGAACACACTAGAACGTAC 59.855 45.833 0.00 0.00 40.11 3.67
1932 2001 2.908634 ACGAACACACTAGAACGTACG 58.091 47.619 15.01 15.01 32.42 3.67
1933 2002 2.287915 ACGAACACACTAGAACGTACGT 59.712 45.455 16.72 16.72 32.42 3.57
1934 2003 3.493129 ACGAACACACTAGAACGTACGTA 59.507 43.478 23.12 5.12 32.42 3.57
1935 2004 4.152402 ACGAACACACTAGAACGTACGTAT 59.848 41.667 23.12 15.82 32.42 3.06
1936 2005 5.347635 ACGAACACACTAGAACGTACGTATA 59.652 40.000 23.12 16.11 32.42 1.47
1937 2006 6.036083 ACGAACACACTAGAACGTACGTATAT 59.964 38.462 23.12 12.85 32.42 0.86
1938 2007 6.567875 CGAACACACTAGAACGTACGTATATC 59.432 42.308 23.12 15.71 0.00 1.63
1939 2008 7.515841 CGAACACACTAGAACGTACGTATATCT 60.516 40.741 23.12 21.91 0.00 1.98
1940 2009 8.648557 AACACACTAGAACGTACGTATATCTA 57.351 34.615 23.12 21.85 0.00 1.98
1941 2010 8.824159 ACACACTAGAACGTACGTATATCTAT 57.176 34.615 23.12 11.64 0.00 1.98
1942 2011 8.706936 ACACACTAGAACGTACGTATATCTATG 58.293 37.037 23.12 21.70 0.00 2.23
1943 2012 8.706936 CACACTAGAACGTACGTATATCTATGT 58.293 37.037 23.12 22.20 0.00 2.29
1944 2013 9.914131 ACACTAGAACGTACGTATATCTATGTA 57.086 33.333 23.12 6.04 0.00 2.29
2007 2082 7.684317 TTGTGAATGGAGGGAGTAACATATA 57.316 36.000 0.00 0.00 0.00 0.86
2034 2109 1.066605 CAATCTTGCATGGTAGCTGCC 59.933 52.381 14.87 14.87 38.89 4.85
2173 2249 7.604545 GTGATTCTAAAGCTCTCCTACTTTTGT 59.395 37.037 0.00 0.00 37.33 2.83
2238 2314 3.076032 ACCCAGCAAAGTTCCCTTCTAAT 59.924 43.478 0.00 0.00 0.00 1.73
2325 2401 6.767524 TTCACCAAACAGCTCTAAAAGAAA 57.232 33.333 0.00 0.00 0.00 2.52
2456 2533 3.778622 ATATAATACTCCCTCCGCCCT 57.221 47.619 0.00 0.00 0.00 5.19
2464 2541 1.227556 CCCTCCGCCCTGAATTACG 60.228 63.158 0.00 0.00 0.00 3.18
2520 2597 9.117183 TGTAATAACGTGTCTAGATACATCTGT 57.883 33.333 18.39 6.30 37.76 3.41
2585 2662 3.423539 ACACCTGCACAATCTACACAT 57.576 42.857 0.00 0.00 0.00 3.21
2587 2664 5.102953 ACACCTGCACAATCTACACATAT 57.897 39.130 0.00 0.00 0.00 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 8.611035 ATGTTGGGACATCTGTGTAAACACATT 61.611 37.037 15.80 4.94 45.77 2.71
23 24 7.196532 ATGTTGGGACATCTGTGTAAACACAT 61.197 38.462 15.80 1.75 45.77 3.21
25 26 3.880490 TGTTGGGACATCTGTGTAAACAC 59.120 43.478 6.29 6.29 42.79 3.32
26 27 4.157849 TGTTGGGACATCTGTGTAAACA 57.842 40.909 0.00 0.00 39.09 2.83
27 28 6.653320 TCTTATGTTGGGACATCTGTGTAAAC 59.347 38.462 0.00 0.00 42.83 2.01
28 29 6.774673 TCTTATGTTGGGACATCTGTGTAAA 58.225 36.000 0.00 0.00 42.83 2.01
29 30 6.367374 TCTTATGTTGGGACATCTGTGTAA 57.633 37.500 0.00 0.00 42.83 2.41
30 31 6.367374 TTCTTATGTTGGGACATCTGTGTA 57.633 37.500 0.00 0.00 42.83 2.90
31 32 4.908601 TCTTATGTTGGGACATCTGTGT 57.091 40.909 0.00 0.00 42.83 3.72
32 33 5.939883 TCTTTCTTATGTTGGGACATCTGTG 59.060 40.000 0.00 0.00 42.83 3.66
33 34 6.126863 TCTTTCTTATGTTGGGACATCTGT 57.873 37.500 0.00 0.00 42.83 3.41
34 35 7.452880 TTTCTTTCTTATGTTGGGACATCTG 57.547 36.000 0.00 0.00 42.83 2.90
35 36 8.477419 TTTTTCTTTCTTATGTTGGGACATCT 57.523 30.769 0.00 0.00 42.83 2.90
38 39 9.137459 TGTATTTTTCTTTCTTATGTTGGGACA 57.863 29.630 0.00 0.00 40.71 4.02
39 40 9.974980 TTGTATTTTTCTTTCTTATGTTGGGAC 57.025 29.630 0.00 0.00 0.00 4.46
53 54 9.691362 GGACAACACATGTATTGTATTTTTCTT 57.309 29.630 21.83 0.00 44.12 2.52
54 55 8.855110 TGGACAACACATGTATTGTATTTTTCT 58.145 29.630 21.83 0.00 44.12 2.52
72 73 1.542030 ACTTTTTGCGTGTGGACAACA 59.458 42.857 0.00 0.00 36.04 3.33
73 74 2.271821 ACTTTTTGCGTGTGGACAAC 57.728 45.000 0.00 0.00 0.00 3.32
74 75 4.575236 TGTATACTTTTTGCGTGTGGACAA 59.425 37.500 4.17 0.00 0.00 3.18
75 76 4.127907 TGTATACTTTTTGCGTGTGGACA 58.872 39.130 4.17 0.00 0.00 4.02
76 77 4.735662 TGTATACTTTTTGCGTGTGGAC 57.264 40.909 4.17 0.00 0.00 4.02
77 78 5.470437 TCATTGTATACTTTTTGCGTGTGGA 59.530 36.000 4.17 0.00 0.00 4.02
78 79 5.694816 TCATTGTATACTTTTTGCGTGTGG 58.305 37.500 4.17 0.00 0.00 4.17
79 80 7.795431 AATCATTGTATACTTTTTGCGTGTG 57.205 32.000 4.17 0.00 0.00 3.82
80 81 8.698854 CAAAATCATTGTATACTTTTTGCGTGT 58.301 29.630 4.17 0.00 30.30 4.49
81 82 8.910666 TCAAAATCATTGTATACTTTTTGCGTG 58.089 29.630 4.17 0.00 35.24 5.34
82 83 8.911662 GTCAAAATCATTGTATACTTTTTGCGT 58.088 29.630 4.17 0.00 35.24 5.24
83 84 8.095512 CGTCAAAATCATTGTATACTTTTTGCG 58.904 33.333 4.17 13.47 35.24 4.85
84 85 8.911662 ACGTCAAAATCATTGTATACTTTTTGC 58.088 29.630 4.17 7.94 35.24 3.68
90 91 9.607285 GTGAAAACGTCAAAATCATTGTATACT 57.393 29.630 4.17 0.00 38.23 2.12
91 92 9.388346 TGTGAAAACGTCAAAATCATTGTATAC 57.612 29.630 0.00 0.00 38.23 1.47
92 93 9.388346 GTGTGAAAACGTCAAAATCATTGTATA 57.612 29.630 0.00 0.00 38.23 1.47
93 94 7.112844 CGTGTGAAAACGTCAAAATCATTGTAT 59.887 33.333 0.00 0.00 38.23 2.29
94 95 6.412362 CGTGTGAAAACGTCAAAATCATTGTA 59.588 34.615 0.00 0.00 38.23 2.41
95 96 5.229052 CGTGTGAAAACGTCAAAATCATTGT 59.771 36.000 0.00 0.00 38.23 2.71
96 97 5.646021 CGTGTGAAAACGTCAAAATCATTG 58.354 37.500 0.00 0.00 38.23 2.82
97 98 4.206200 GCGTGTGAAAACGTCAAAATCATT 59.794 37.500 0.00 0.00 45.32 2.57
98 99 3.728718 GCGTGTGAAAACGTCAAAATCAT 59.271 39.130 0.00 0.00 45.32 2.45
99 100 3.102276 GCGTGTGAAAACGTCAAAATCA 58.898 40.909 0.00 0.00 45.32 2.57
100 101 3.729204 GCGTGTGAAAACGTCAAAATC 57.271 42.857 0.00 0.00 45.32 2.17
107 108 2.349297 TTTTTGGCGTGTGAAAACGT 57.651 40.000 0.00 0.00 45.32 3.99
108 109 3.916405 AATTTTTGGCGTGTGAAAACG 57.084 38.095 0.00 0.00 46.30 3.60
109 110 5.062308 TGTGTAATTTTTGGCGTGTGAAAAC 59.938 36.000 0.00 0.00 0.00 2.43
110 111 5.168569 TGTGTAATTTTTGGCGTGTGAAAA 58.831 33.333 0.00 0.00 0.00 2.29
111 112 4.744570 TGTGTAATTTTTGGCGTGTGAAA 58.255 34.783 0.00 0.00 0.00 2.69
112 113 4.371855 TGTGTAATTTTTGGCGTGTGAA 57.628 36.364 0.00 0.00 0.00 3.18
113 114 4.576216 ATGTGTAATTTTTGGCGTGTGA 57.424 36.364 0.00 0.00 0.00 3.58
114 115 5.457140 ACTATGTGTAATTTTTGGCGTGTG 58.543 37.500 0.00 0.00 0.00 3.82
115 116 5.615984 CGACTATGTGTAATTTTTGGCGTGT 60.616 40.000 0.00 0.00 0.00 4.49
116 117 4.786068 CGACTATGTGTAATTTTTGGCGTG 59.214 41.667 0.00 0.00 0.00 5.34
117 118 4.453136 ACGACTATGTGTAATTTTTGGCGT 59.547 37.500 0.00 0.00 0.00 5.68
118 119 4.786068 CACGACTATGTGTAATTTTTGGCG 59.214 41.667 0.00 0.00 35.12 5.69
131 132 3.570975 TGTTCCAGTACACACGACTATGT 59.429 43.478 0.00 0.00 0.00 2.29
132 133 4.168922 TGTTCCAGTACACACGACTATG 57.831 45.455 0.00 0.00 0.00 2.23
133 134 4.859304 TTGTTCCAGTACACACGACTAT 57.141 40.909 0.00 0.00 0.00 2.12
134 135 4.859304 ATTGTTCCAGTACACACGACTA 57.141 40.909 0.00 0.00 0.00 2.59
135 136 3.746045 ATTGTTCCAGTACACACGACT 57.254 42.857 0.00 0.00 0.00 4.18
136 137 7.330208 AGTTATAATTGTTCCAGTACACACGAC 59.670 37.037 0.00 0.00 0.00 4.34
137 138 7.380536 AGTTATAATTGTTCCAGTACACACGA 58.619 34.615 0.00 0.00 0.00 4.35
138 139 7.591006 AGTTATAATTGTTCCAGTACACACG 57.409 36.000 0.00 0.00 0.00 4.49
140 141 9.999660 TGTTAGTTATAATTGTTCCAGTACACA 57.000 29.630 0.00 0.00 0.00 3.72
171 172 9.612620 GGTCAGTGTGTTCTATTTTTATTCTTG 57.387 33.333 0.00 0.00 0.00 3.02
172 173 9.349713 TGGTCAGTGTGTTCTATTTTTATTCTT 57.650 29.630 0.00 0.00 0.00 2.52
173 174 8.918202 TGGTCAGTGTGTTCTATTTTTATTCT 57.082 30.769 0.00 0.00 0.00 2.40
174 175 9.559958 CATGGTCAGTGTGTTCTATTTTTATTC 57.440 33.333 0.00 0.00 0.00 1.75
175 176 8.028938 GCATGGTCAGTGTGTTCTATTTTTATT 58.971 33.333 0.00 0.00 0.00 1.40
176 177 7.394359 AGCATGGTCAGTGTGTTCTATTTTTAT 59.606 33.333 0.00 0.00 0.00 1.40
177 178 6.714810 AGCATGGTCAGTGTGTTCTATTTTTA 59.285 34.615 0.00 0.00 0.00 1.52
178 179 5.536161 AGCATGGTCAGTGTGTTCTATTTTT 59.464 36.000 0.00 0.00 0.00 1.94
179 180 5.072741 AGCATGGTCAGTGTGTTCTATTTT 58.927 37.500 0.00 0.00 0.00 1.82
180 181 4.655963 AGCATGGTCAGTGTGTTCTATTT 58.344 39.130 0.00 0.00 0.00 1.40
181 182 4.292186 AGCATGGTCAGTGTGTTCTATT 57.708 40.909 0.00 0.00 0.00 1.73
182 183 3.988976 AGCATGGTCAGTGTGTTCTAT 57.011 42.857 0.00 0.00 0.00 1.98
183 184 3.832490 AGTAGCATGGTCAGTGTGTTCTA 59.168 43.478 0.00 0.00 0.00 2.10
184 185 2.634940 AGTAGCATGGTCAGTGTGTTCT 59.365 45.455 0.00 0.00 0.00 3.01
185 186 2.996621 GAGTAGCATGGTCAGTGTGTTC 59.003 50.000 0.00 0.00 0.00 3.18
186 187 2.634940 AGAGTAGCATGGTCAGTGTGTT 59.365 45.455 0.00 0.00 0.00 3.32
187 188 2.251818 AGAGTAGCATGGTCAGTGTGT 58.748 47.619 0.00 0.00 0.00 3.72
188 189 4.428209 CTTAGAGTAGCATGGTCAGTGTG 58.572 47.826 0.00 0.00 0.00 3.82
189 190 3.118956 GCTTAGAGTAGCATGGTCAGTGT 60.119 47.826 0.00 0.00 40.89 3.55
190 191 3.131933 AGCTTAGAGTAGCATGGTCAGTG 59.868 47.826 0.00 0.00 43.68 3.66
191 192 3.131933 CAGCTTAGAGTAGCATGGTCAGT 59.868 47.826 0.00 0.00 43.68 3.41
192 193 3.382865 TCAGCTTAGAGTAGCATGGTCAG 59.617 47.826 0.00 0.00 43.68 3.51
193 194 3.365472 TCAGCTTAGAGTAGCATGGTCA 58.635 45.455 0.00 0.00 43.68 4.02
194 195 4.599047 ATCAGCTTAGAGTAGCATGGTC 57.401 45.455 0.00 0.00 43.68 4.02
195 196 5.365021 AAATCAGCTTAGAGTAGCATGGT 57.635 39.130 1.62 1.62 43.68 3.55
196 197 6.128336 GCATAAATCAGCTTAGAGTAGCATGG 60.128 42.308 0.00 0.00 43.68 3.66
197 198 6.426025 TGCATAAATCAGCTTAGAGTAGCATG 59.574 38.462 0.00 0.00 43.68 4.06
198 199 6.528321 TGCATAAATCAGCTTAGAGTAGCAT 58.472 36.000 0.00 0.00 43.68 3.79
199 200 5.917462 TGCATAAATCAGCTTAGAGTAGCA 58.083 37.500 0.00 0.00 43.68 3.49
200 201 8.539770 TTATGCATAAATCAGCTTAGAGTAGC 57.460 34.615 16.78 0.00 41.53 3.58
202 203 9.273016 GGTTTATGCATAAATCAGCTTAGAGTA 57.727 33.333 29.36 5.75 34.35 2.59
203 204 7.229506 GGGTTTATGCATAAATCAGCTTAGAGT 59.770 37.037 32.87 0.00 35.56 3.24
204 205 7.308830 GGGGTTTATGCATAAATCAGCTTAGAG 60.309 40.741 32.87 0.00 35.56 2.43
205 206 6.490040 GGGGTTTATGCATAAATCAGCTTAGA 59.510 38.462 32.87 9.73 35.56 2.10
206 207 6.265196 TGGGGTTTATGCATAAATCAGCTTAG 59.735 38.462 32.87 0.00 35.56 2.18
207 208 6.132658 TGGGGTTTATGCATAAATCAGCTTA 58.867 36.000 32.87 17.08 35.56 3.09
208 209 4.961730 TGGGGTTTATGCATAAATCAGCTT 59.038 37.500 32.87 0.00 35.56 3.74
209 210 4.545678 TGGGGTTTATGCATAAATCAGCT 58.454 39.130 32.87 0.48 35.56 4.24
210 211 4.935352 TGGGGTTTATGCATAAATCAGC 57.065 40.909 32.87 21.66 35.56 4.26
211 212 5.291971 GCTTGGGGTTTATGCATAAATCAG 58.708 41.667 32.87 25.04 35.56 2.90
212 213 4.100808 GGCTTGGGGTTTATGCATAAATCA 59.899 41.667 32.87 25.68 35.56 2.57
213 214 4.344968 AGGCTTGGGGTTTATGCATAAATC 59.655 41.667 29.36 28.35 35.02 2.17
214 215 4.297768 AGGCTTGGGGTTTATGCATAAAT 58.702 39.130 29.36 11.66 35.02 1.40
215 216 3.718723 AGGCTTGGGGTTTATGCATAAA 58.281 40.909 24.63 24.63 0.00 1.40
216 217 3.396685 AGGCTTGGGGTTTATGCATAA 57.603 42.857 15.21 15.21 0.00 1.90
217 218 3.396685 AAGGCTTGGGGTTTATGCATA 57.603 42.857 1.16 1.16 0.00 3.14
218 219 2.252535 AAGGCTTGGGGTTTATGCAT 57.747 45.000 3.79 3.79 0.00 3.96
219 220 2.022718 AAAGGCTTGGGGTTTATGCA 57.977 45.000 0.00 0.00 0.00 3.96
220 221 2.567169 AGAAAAGGCTTGGGGTTTATGC 59.433 45.455 0.00 0.00 0.00 3.14
221 222 4.890158 AAGAAAAGGCTTGGGGTTTATG 57.110 40.909 0.00 0.00 0.00 1.90
222 223 5.715279 GTCTAAGAAAAGGCTTGGGGTTTAT 59.285 40.000 0.00 0.00 0.00 1.40
223 224 5.074804 GTCTAAGAAAAGGCTTGGGGTTTA 58.925 41.667 0.00 0.00 0.00 2.01
224 225 3.895656 GTCTAAGAAAAGGCTTGGGGTTT 59.104 43.478 0.00 0.00 0.00 3.27
225 226 3.140332 AGTCTAAGAAAAGGCTTGGGGTT 59.860 43.478 0.00 0.00 0.00 4.11
226 227 2.716969 AGTCTAAGAAAAGGCTTGGGGT 59.283 45.455 0.00 0.00 0.00 4.95
227 228 3.441500 AGTCTAAGAAAAGGCTTGGGG 57.558 47.619 0.00 0.00 0.00 4.96
228 229 6.180472 TGAATAGTCTAAGAAAAGGCTTGGG 58.820 40.000 0.00 0.00 32.53 4.12
229 230 6.881602 ACTGAATAGTCTAAGAAAAGGCTTGG 59.118 38.462 0.00 0.00 32.53 3.61
230 231 7.604164 TCACTGAATAGTCTAAGAAAAGGCTTG 59.396 37.037 0.00 0.00 34.07 4.01
231 232 7.680730 TCACTGAATAGTCTAAGAAAAGGCTT 58.319 34.615 0.00 0.00 34.07 4.35
232 233 7.246171 TCACTGAATAGTCTAAGAAAAGGCT 57.754 36.000 0.00 0.00 34.07 4.58
233 234 7.907214 TTCACTGAATAGTCTAAGAAAAGGC 57.093 36.000 0.00 0.00 34.07 4.35
234 235 9.658799 TCATTCACTGAATAGTCTAAGAAAAGG 57.341 33.333 3.88 0.00 34.07 3.11
238 239 9.862371 GACTTCATTCACTGAATAGTCTAAGAA 57.138 33.333 19.24 10.61 42.87 2.52
239 240 9.025041 TGACTTCATTCACTGAATAGTCTAAGA 57.975 33.333 23.39 10.09 42.87 2.10
240 241 9.645059 TTGACTTCATTCACTGAATAGTCTAAG 57.355 33.333 23.39 15.52 42.87 2.18
241 242 9.996554 TTTGACTTCATTCACTGAATAGTCTAA 57.003 29.630 23.39 20.73 42.87 2.10
242 243 9.424319 GTTTGACTTCATTCACTGAATAGTCTA 57.576 33.333 23.39 17.77 42.87 2.59
243 244 7.933577 TGTTTGACTTCATTCACTGAATAGTCT 59.066 33.333 23.39 4.51 42.87 3.24
244 245 8.087982 TGTTTGACTTCATTCACTGAATAGTC 57.912 34.615 19.50 19.50 42.87 2.59
245 246 7.933577 TCTGTTTGACTTCATTCACTGAATAGT 59.066 33.333 3.88 5.56 42.87 2.12
246 247 8.315391 TCTGTTTGACTTCATTCACTGAATAG 57.685 34.615 3.88 2.49 42.87 1.73
247 248 8.675705 TTCTGTTTGACTTCATTCACTGAATA 57.324 30.769 3.88 0.00 42.87 1.75
248 249 7.572523 TTCTGTTTGACTTCATTCACTGAAT 57.427 32.000 0.00 0.00 42.87 2.57
249 250 7.389803 TTTCTGTTTGACTTCATTCACTGAA 57.610 32.000 0.00 0.00 41.61 3.02
250 251 6.458751 GCTTTCTGTTTGACTTCATTCACTGA 60.459 38.462 0.00 0.00 0.00 3.41
251 252 5.684626 GCTTTCTGTTTGACTTCATTCACTG 59.315 40.000 0.00 0.00 0.00 3.66
252 253 5.221126 GGCTTTCTGTTTGACTTCATTCACT 60.221 40.000 0.00 0.00 0.00 3.41
253 254 4.978580 GGCTTTCTGTTTGACTTCATTCAC 59.021 41.667 0.00 0.00 0.00 3.18
254 255 4.037923 GGGCTTTCTGTTTGACTTCATTCA 59.962 41.667 0.00 0.00 0.00 2.57
255 256 4.037923 TGGGCTTTCTGTTTGACTTCATTC 59.962 41.667 0.00 0.00 0.00 2.67
256 257 3.960102 TGGGCTTTCTGTTTGACTTCATT 59.040 39.130 0.00 0.00 0.00 2.57
257 258 3.565307 TGGGCTTTCTGTTTGACTTCAT 58.435 40.909 0.00 0.00 0.00 2.57
258 259 3.011566 TGGGCTTTCTGTTTGACTTCA 57.988 42.857 0.00 0.00 0.00 3.02
259 260 3.130340 TGTTGGGCTTTCTGTTTGACTTC 59.870 43.478 0.00 0.00 0.00 3.01
260 261 3.096092 TGTTGGGCTTTCTGTTTGACTT 58.904 40.909 0.00 0.00 0.00 3.01
261 262 2.733956 TGTTGGGCTTTCTGTTTGACT 58.266 42.857 0.00 0.00 0.00 3.41
262 263 3.518634 TTGTTGGGCTTTCTGTTTGAC 57.481 42.857 0.00 0.00 0.00 3.18
263 264 3.259374 TGTTTGTTGGGCTTTCTGTTTGA 59.741 39.130 0.00 0.00 0.00 2.69
264 265 3.594134 TGTTTGTTGGGCTTTCTGTTTG 58.406 40.909 0.00 0.00 0.00 2.93
265 266 3.513515 TCTGTTTGTTGGGCTTTCTGTTT 59.486 39.130 0.00 0.00 0.00 2.83
266 267 3.096092 TCTGTTTGTTGGGCTTTCTGTT 58.904 40.909 0.00 0.00 0.00 3.16
267 268 2.427095 GTCTGTTTGTTGGGCTTTCTGT 59.573 45.455 0.00 0.00 0.00 3.41
268 269 2.426738 TGTCTGTTTGTTGGGCTTTCTG 59.573 45.455 0.00 0.00 0.00 3.02
269 270 2.733956 TGTCTGTTTGTTGGGCTTTCT 58.266 42.857 0.00 0.00 0.00 2.52
270 271 3.447742 CTTGTCTGTTTGTTGGGCTTTC 58.552 45.455 0.00 0.00 0.00 2.62
271 272 2.168313 CCTTGTCTGTTTGTTGGGCTTT 59.832 45.455 0.00 0.00 0.00 3.51
272 273 1.756538 CCTTGTCTGTTTGTTGGGCTT 59.243 47.619 0.00 0.00 0.00 4.35
273 274 1.064017 TCCTTGTCTGTTTGTTGGGCT 60.064 47.619 0.00 0.00 0.00 5.19
274 275 1.398692 TCCTTGTCTGTTTGTTGGGC 58.601 50.000 0.00 0.00 0.00 5.36
275 276 2.223805 GCTTCCTTGTCTGTTTGTTGGG 60.224 50.000 0.00 0.00 0.00 4.12
276 277 2.223805 GGCTTCCTTGTCTGTTTGTTGG 60.224 50.000 0.00 0.00 0.00 3.77
277 278 2.426738 TGGCTTCCTTGTCTGTTTGTTG 59.573 45.455 0.00 0.00 0.00 3.33
278 279 2.427095 GTGGCTTCCTTGTCTGTTTGTT 59.573 45.455 0.00 0.00 0.00 2.83
279 280 2.024414 GTGGCTTCCTTGTCTGTTTGT 58.976 47.619 0.00 0.00 0.00 2.83
280 281 2.023673 TGTGGCTTCCTTGTCTGTTTG 58.976 47.619 0.00 0.00 0.00 2.93
281 282 2.427095 GTTGTGGCTTCCTTGTCTGTTT 59.573 45.455 0.00 0.00 0.00 2.83
282 283 2.024414 GTTGTGGCTTCCTTGTCTGTT 58.976 47.619 0.00 0.00 0.00 3.16
283 284 1.680338 GTTGTGGCTTCCTTGTCTGT 58.320 50.000 0.00 0.00 0.00 3.41
284 285 0.954452 GGTTGTGGCTTCCTTGTCTG 59.046 55.000 0.00 0.00 0.00 3.51
285 286 0.178990 GGGTTGTGGCTTCCTTGTCT 60.179 55.000 0.00 0.00 0.00 3.41
286 287 1.179174 GGGGTTGTGGCTTCCTTGTC 61.179 60.000 0.00 0.00 0.00 3.18
287 288 1.152546 GGGGTTGTGGCTTCCTTGT 60.153 57.895 0.00 0.00 0.00 3.16
288 289 1.908299 GGGGGTTGTGGCTTCCTTG 60.908 63.158 0.00 0.00 0.00 3.61
289 290 2.399607 TGGGGGTTGTGGCTTCCTT 61.400 57.895 0.00 0.00 0.00 3.36
290 291 2.780924 TGGGGGTTGTGGCTTCCT 60.781 61.111 0.00 0.00 0.00 3.36
291 292 2.600470 GTGGGGGTTGTGGCTTCC 60.600 66.667 0.00 0.00 0.00 3.46
292 293 2.600470 GGTGGGGGTTGTGGCTTC 60.600 66.667 0.00 0.00 0.00 3.86
293 294 2.250635 AAAGGTGGGGGTTGTGGCTT 62.251 55.000 0.00 0.00 0.00 4.35
294 295 2.710826 AAAGGTGGGGGTTGTGGCT 61.711 57.895 0.00 0.00 0.00 4.75
295 296 2.123033 AAAGGTGGGGGTTGTGGC 60.123 61.111 0.00 0.00 0.00 5.01
296 297 1.836604 CCAAAGGTGGGGGTTGTGG 60.837 63.158 0.00 0.00 41.77 4.17
297 298 3.869481 CCAAAGGTGGGGGTTGTG 58.131 61.111 0.00 0.00 41.77 3.33
305 306 1.908299 GAGTTGGGCCCAAAGGTGG 60.908 63.158 38.70 0.00 45.53 4.61
306 307 0.542702 ATGAGTTGGGCCCAAAGGTG 60.543 55.000 38.70 0.00 37.70 4.00
307 308 0.251787 GATGAGTTGGGCCCAAAGGT 60.252 55.000 38.70 25.41 37.70 3.50
308 309 1.315257 CGATGAGTTGGGCCCAAAGG 61.315 60.000 38.70 19.10 37.70 3.11
309 310 1.937546 GCGATGAGTTGGGCCCAAAG 61.938 60.000 38.70 23.73 37.70 2.77
310 311 1.976474 GCGATGAGTTGGGCCCAAA 60.976 57.895 38.70 24.26 37.70 3.28
311 312 2.361104 GCGATGAGTTGGGCCCAA 60.361 61.111 34.07 34.07 0.00 4.12
312 313 4.776322 CGCGATGAGTTGGGCCCA 62.776 66.667 24.45 24.45 0.00 5.36
313 314 2.862674 TTACGCGATGAGTTGGGCCC 62.863 60.000 17.59 17.59 0.00 5.80
314 315 1.429148 CTTACGCGATGAGTTGGGCC 61.429 60.000 15.93 0.00 0.00 5.80
315 316 2.006772 CTTACGCGATGAGTTGGGC 58.993 57.895 15.93 0.00 0.00 5.36
316 317 1.429148 GGCTTACGCGATGAGTTGGG 61.429 60.000 15.93 0.00 36.88 4.12
317 318 1.752501 CGGCTTACGCGATGAGTTGG 61.753 60.000 15.93 0.00 36.88 3.77
318 319 1.631072 CGGCTTACGCGATGAGTTG 59.369 57.895 15.93 0.58 36.88 3.16
319 320 1.518572 CCGGCTTACGCGATGAGTT 60.519 57.895 15.93 0.00 42.52 3.01
320 321 2.104331 CCGGCTTACGCGATGAGT 59.896 61.111 15.93 0.00 42.52 3.41
321 322 1.944676 GACCGGCTTACGCGATGAG 60.945 63.158 15.93 8.52 42.52 2.90
322 323 2.103538 GACCGGCTTACGCGATGA 59.896 61.111 15.93 0.00 42.52 2.92
323 324 2.067091 TAGGACCGGCTTACGCGATG 62.067 60.000 15.93 2.87 42.52 3.84
324 325 1.825191 TAGGACCGGCTTACGCGAT 60.825 57.895 15.93 0.00 42.52 4.58
325 326 2.438254 TAGGACCGGCTTACGCGA 60.438 61.111 15.93 0.00 42.52 5.87
326 327 2.278401 GTAGGACCGGCTTACGCG 60.278 66.667 3.53 3.53 42.52 6.01
327 328 1.226888 CTGTAGGACCGGCTTACGC 60.227 63.158 0.00 0.00 42.52 4.42
328 329 1.226888 GCTGTAGGACCGGCTTACG 60.227 63.158 0.00 3.93 43.80 3.18
329 330 1.143401 GGCTGTAGGACCGGCTTAC 59.857 63.158 0.00 6.29 0.00 2.34
330 331 0.905809 TTGGCTGTAGGACCGGCTTA 60.906 55.000 0.00 0.00 0.00 3.09
331 332 1.774894 TTTGGCTGTAGGACCGGCTT 61.775 55.000 0.00 0.00 0.00 4.35
332 333 1.774894 TTTTGGCTGTAGGACCGGCT 61.775 55.000 0.00 0.00 0.00 5.52
333 334 0.891904 TTTTTGGCTGTAGGACCGGC 60.892 55.000 0.00 0.00 0.00 6.13
334 335 3.332706 TTTTTGGCTGTAGGACCGG 57.667 52.632 0.00 0.00 0.00 5.28
349 350 2.480587 CCGGCCGTTGTCTTTTCTTTTT 60.481 45.455 26.12 0.00 0.00 1.94
350 351 1.066454 CCGGCCGTTGTCTTTTCTTTT 59.934 47.619 26.12 0.00 0.00 2.27
351 352 0.666374 CCGGCCGTTGTCTTTTCTTT 59.334 50.000 26.12 0.00 0.00 2.52
352 353 0.464916 ACCGGCCGTTGTCTTTTCTT 60.465 50.000 26.12 0.00 0.00 2.52
353 354 0.883370 GACCGGCCGTTGTCTTTTCT 60.883 55.000 26.12 0.00 0.00 2.52
354 355 1.161563 TGACCGGCCGTTGTCTTTTC 61.162 55.000 27.49 11.50 32.67 2.29
355 356 1.153127 TGACCGGCCGTTGTCTTTT 60.153 52.632 27.49 3.34 32.67 2.27
356 357 1.890510 GTGACCGGCCGTTGTCTTT 60.891 57.895 27.49 4.63 32.67 2.52
357 358 2.280592 GTGACCGGCCGTTGTCTT 60.281 61.111 27.49 6.27 32.67 3.01
358 359 3.542676 TGTGACCGGCCGTTGTCT 61.543 61.111 27.49 6.22 32.67 3.41
359 360 3.343421 GTGTGACCGGCCGTTGTC 61.343 66.667 26.12 24.26 0.00 3.18
360 361 4.922026 GGTGTGACCGGCCGTTGT 62.922 66.667 26.12 16.35 0.00 3.32
370 371 4.016706 CTGTCCCGGGGGTGTGAC 62.017 72.222 23.50 11.11 36.47 3.67
376 377 3.477956 TATAGGCCTGTCCCGGGGG 62.478 68.421 23.50 15.94 34.51 5.40
377 378 2.203182 TATAGGCCTGTCCCGGGG 59.797 66.667 23.50 6.77 34.51 5.73
378 379 2.571216 CGTATAGGCCTGTCCCGGG 61.571 68.421 16.85 16.85 34.51 5.73
379 380 1.529948 TCGTATAGGCCTGTCCCGG 60.530 63.158 17.99 0.00 34.51 5.73
380 381 1.105167 TGTCGTATAGGCCTGTCCCG 61.105 60.000 17.99 15.07 34.51 5.14
381 382 1.339097 ATGTCGTATAGGCCTGTCCC 58.661 55.000 17.99 1.89 34.51 4.46
382 383 3.614390 GCTTATGTCGTATAGGCCTGTCC 60.614 52.174 17.99 0.00 0.00 4.02
383 384 3.576648 GCTTATGTCGTATAGGCCTGTC 58.423 50.000 17.99 4.46 0.00 3.51
384 385 2.299297 GGCTTATGTCGTATAGGCCTGT 59.701 50.000 17.99 12.48 41.74 4.00
385 386 2.299013 TGGCTTATGTCGTATAGGCCTG 59.701 50.000 17.99 0.00 44.26 4.85
386 387 2.299297 GTGGCTTATGTCGTATAGGCCT 59.701 50.000 24.30 11.78 44.26 5.19
387 388 2.685100 GTGGCTTATGTCGTATAGGCC 58.315 52.381 20.38 20.38 44.22 5.19
388 389 2.030540 TCGTGGCTTATGTCGTATAGGC 60.031 50.000 7.60 7.60 0.00 3.93
389 390 3.562505 GTCGTGGCTTATGTCGTATAGG 58.437 50.000 0.00 0.00 0.00 2.57
390 391 3.252701 AGGTCGTGGCTTATGTCGTATAG 59.747 47.826 0.00 0.00 0.00 1.31
391 392 3.216800 AGGTCGTGGCTTATGTCGTATA 58.783 45.455 0.00 0.00 0.00 1.47
392 393 2.029623 AGGTCGTGGCTTATGTCGTAT 58.970 47.619 0.00 0.00 0.00 3.06
393 394 1.402968 GAGGTCGTGGCTTATGTCGTA 59.597 52.381 0.00 0.00 0.00 3.43
394 395 0.172803 GAGGTCGTGGCTTATGTCGT 59.827 55.000 0.00 0.00 0.00 4.34
395 396 0.172578 TGAGGTCGTGGCTTATGTCG 59.827 55.000 0.00 0.00 0.00 4.35
396 397 2.604046 ATGAGGTCGTGGCTTATGTC 57.396 50.000 0.00 0.00 0.00 3.06
397 398 3.196901 TGTTATGAGGTCGTGGCTTATGT 59.803 43.478 0.00 0.00 0.00 2.29
398 399 3.792401 TGTTATGAGGTCGTGGCTTATG 58.208 45.455 0.00 0.00 0.00 1.90
399 400 4.481368 TTGTTATGAGGTCGTGGCTTAT 57.519 40.909 0.00 0.00 0.00 1.73
400 401 3.965379 TTGTTATGAGGTCGTGGCTTA 57.035 42.857 0.00 0.00 0.00 3.09
401 402 2.851263 TTGTTATGAGGTCGTGGCTT 57.149 45.000 0.00 0.00 0.00 4.35
402 403 2.851263 TTTGTTATGAGGTCGTGGCT 57.149 45.000 0.00 0.00 0.00 4.75
403 404 3.270877 AGATTTGTTATGAGGTCGTGGC 58.729 45.455 0.00 0.00 0.00 5.01
404 405 6.978343 TTTAGATTTGTTATGAGGTCGTGG 57.022 37.500 0.00 0.00 0.00 4.94
405 406 6.961554 GCTTTTAGATTTGTTATGAGGTCGTG 59.038 38.462 0.00 0.00 0.00 4.35
406 407 6.879458 AGCTTTTAGATTTGTTATGAGGTCGT 59.121 34.615 0.00 0.00 0.00 4.34
407 408 7.064609 TCAGCTTTTAGATTTGTTATGAGGTCG 59.935 37.037 0.00 0.00 0.00 4.79
408 409 8.268850 TCAGCTTTTAGATTTGTTATGAGGTC 57.731 34.615 0.00 0.00 0.00 3.85
409 410 8.635765 TTCAGCTTTTAGATTTGTTATGAGGT 57.364 30.769 0.00 0.00 0.00 3.85
410 411 9.912634 TTTTCAGCTTTTAGATTTGTTATGAGG 57.087 29.630 0.00 0.00 0.00 3.86
412 413 9.393249 CGTTTTCAGCTTTTAGATTTGTTATGA 57.607 29.630 0.00 0.00 0.00 2.15
413 414 9.393249 TCGTTTTCAGCTTTTAGATTTGTTATG 57.607 29.630 0.00 0.00 0.00 1.90
415 416 9.607285 GATCGTTTTCAGCTTTTAGATTTGTTA 57.393 29.630 0.00 0.00 0.00 2.41
416 417 7.595130 GGATCGTTTTCAGCTTTTAGATTTGTT 59.405 33.333 0.00 0.00 0.00 2.83
417 418 7.084486 GGATCGTTTTCAGCTTTTAGATTTGT 58.916 34.615 0.00 0.00 0.00 2.83
418 419 6.249260 CGGATCGTTTTCAGCTTTTAGATTTG 59.751 38.462 0.00 0.00 0.00 2.32
419 420 6.148811 TCGGATCGTTTTCAGCTTTTAGATTT 59.851 34.615 0.00 0.00 0.00 2.17
420 421 5.642063 TCGGATCGTTTTCAGCTTTTAGATT 59.358 36.000 0.00 0.00 0.00 2.40
421 422 5.175859 TCGGATCGTTTTCAGCTTTTAGAT 58.824 37.500 0.00 0.00 0.00 1.98
422 423 4.562082 TCGGATCGTTTTCAGCTTTTAGA 58.438 39.130 0.00 0.00 0.00 2.10
423 424 4.921470 TCGGATCGTTTTCAGCTTTTAG 57.079 40.909 0.00 0.00 0.00 1.85
424 425 4.094294 CCATCGGATCGTTTTCAGCTTTTA 59.906 41.667 0.00 0.00 0.00 1.52
425 426 3.119849 CCATCGGATCGTTTTCAGCTTTT 60.120 43.478 0.00 0.00 0.00 2.27
426 427 2.420022 CCATCGGATCGTTTTCAGCTTT 59.580 45.455 0.00 0.00 0.00 3.51
427 428 2.009774 CCATCGGATCGTTTTCAGCTT 58.990 47.619 0.00 0.00 0.00 3.74
428 429 1.656652 CCATCGGATCGTTTTCAGCT 58.343 50.000 0.00 0.00 0.00 4.24
429 430 0.028110 GCCATCGGATCGTTTTCAGC 59.972 55.000 0.00 0.00 0.00 4.26
430 431 0.657840 GGCCATCGGATCGTTTTCAG 59.342 55.000 0.00 0.00 0.00 3.02
431 432 0.035915 TGGCCATCGGATCGTTTTCA 60.036 50.000 0.00 0.00 0.00 2.69
432 433 0.657840 CTGGCCATCGGATCGTTTTC 59.342 55.000 5.51 0.00 0.00 2.29
433 434 0.251916 TCTGGCCATCGGATCGTTTT 59.748 50.000 5.51 0.00 0.00 2.43
434 435 0.462047 GTCTGGCCATCGGATCGTTT 60.462 55.000 5.51 0.00 32.64 3.60
435 436 1.144057 GTCTGGCCATCGGATCGTT 59.856 57.895 5.51 0.00 32.64 3.85
436 437 2.058001 TGTCTGGCCATCGGATCGT 61.058 57.895 5.51 0.00 32.64 3.73
437 438 1.592669 GTGTCTGGCCATCGGATCG 60.593 63.158 5.51 0.00 32.64 3.69
438 439 1.592669 CGTGTCTGGCCATCGGATC 60.593 63.158 5.51 0.00 32.64 3.36
439 440 2.298158 GACGTGTCTGGCCATCGGAT 62.298 60.000 5.51 0.00 32.64 4.18
440 441 2.994995 ACGTGTCTGGCCATCGGA 60.995 61.111 5.51 0.00 0.00 4.55
441 442 2.509336 GACGTGTCTGGCCATCGG 60.509 66.667 5.51 0.00 0.00 4.18
442 443 2.880879 CGACGTGTCTGGCCATCG 60.881 66.667 5.51 8.04 0.00 3.84
443 444 1.805945 GTCGACGTGTCTGGCCATC 60.806 63.158 5.51 3.08 0.00 3.51
444 445 2.261671 GTCGACGTGTCTGGCCAT 59.738 61.111 5.51 0.00 0.00 4.40
445 446 2.910479 AGTCGACGTGTCTGGCCA 60.910 61.111 10.46 4.71 0.00 5.36
446 447 2.430921 CAGTCGACGTGTCTGGCC 60.431 66.667 10.46 0.00 31.12 5.36
447 448 1.442857 CTCAGTCGACGTGTCTGGC 60.443 63.158 10.46 0.00 34.90 4.85
448 449 0.110147 GTCTCAGTCGACGTGTCTGG 60.110 60.000 10.46 0.00 34.90 3.86
449 450 0.869068 AGTCTCAGTCGACGTGTCTG 59.131 55.000 10.46 2.38 38.90 3.51
450 451 1.532007 GAAGTCTCAGTCGACGTGTCT 59.468 52.381 10.46 6.65 38.90 3.41
451 452 1.263484 TGAAGTCTCAGTCGACGTGTC 59.737 52.381 10.46 4.59 38.90 3.67
452 453 1.306148 TGAAGTCTCAGTCGACGTGT 58.694 50.000 10.46 0.00 38.90 4.49
453 454 2.620779 ATGAAGTCTCAGTCGACGTG 57.379 50.000 10.46 9.13 38.90 4.49
454 455 4.001652 TCTAATGAAGTCTCAGTCGACGT 58.998 43.478 10.46 0.00 38.90 4.34
455 456 4.601621 TCTAATGAAGTCTCAGTCGACG 57.398 45.455 10.46 5.48 38.90 5.12
456 457 5.945155 AGTTCTAATGAAGTCTCAGTCGAC 58.055 41.667 7.70 7.70 34.23 4.20
457 458 6.184580 GAGTTCTAATGAAGTCTCAGTCGA 57.815 41.667 6.41 0.00 44.86 4.20
466 467 3.511934 AGCCGACTGAGTTCTAATGAAGT 59.488 43.478 0.00 0.00 38.45 3.01
467 468 4.116747 AGCCGACTGAGTTCTAATGAAG 57.883 45.455 0.00 0.00 32.15 3.02
480 481 1.732259 ACGCTAAAAATCAGCCGACTG 59.268 47.619 0.00 0.00 45.95 3.51
481 482 2.094762 ACGCTAAAAATCAGCCGACT 57.905 45.000 0.00 0.00 35.53 4.18
482 483 3.802685 AGATACGCTAAAAATCAGCCGAC 59.197 43.478 0.00 0.00 35.53 4.79
483 484 3.802139 CAGATACGCTAAAAATCAGCCGA 59.198 43.478 0.00 0.00 35.53 5.54
484 485 3.555956 ACAGATACGCTAAAAATCAGCCG 59.444 43.478 0.00 0.00 35.53 5.52
485 486 5.485662 AACAGATACGCTAAAAATCAGCC 57.514 39.130 0.00 0.00 35.53 4.85
486 487 5.228012 GCAAACAGATACGCTAAAAATCAGC 59.772 40.000 0.00 0.00 35.61 4.26
487 488 5.449113 CGCAAACAGATACGCTAAAAATCAG 59.551 40.000 0.00 0.00 0.00 2.90
488 489 5.320723 CGCAAACAGATACGCTAAAAATCA 58.679 37.500 0.00 0.00 0.00 2.57
489 490 4.728608 CCGCAAACAGATACGCTAAAAATC 59.271 41.667 0.00 0.00 0.00 2.17
490 491 4.393680 TCCGCAAACAGATACGCTAAAAAT 59.606 37.500 0.00 0.00 0.00 1.82
491 492 3.747010 TCCGCAAACAGATACGCTAAAAA 59.253 39.130 0.00 0.00 0.00 1.94
492 493 3.327626 TCCGCAAACAGATACGCTAAAA 58.672 40.909 0.00 0.00 0.00 1.52
493 494 2.962125 TCCGCAAACAGATACGCTAAA 58.038 42.857 0.00 0.00 0.00 1.85
494 495 2.658373 TCCGCAAACAGATACGCTAA 57.342 45.000 0.00 0.00 0.00 3.09
495 496 2.882927 ATCCGCAAACAGATACGCTA 57.117 45.000 0.00 0.00 0.00 4.26
496 497 2.882927 TATCCGCAAACAGATACGCT 57.117 45.000 0.00 0.00 0.00 5.07
497 498 3.059044 CGTATATCCGCAAACAGATACGC 59.941 47.826 0.00 0.00 36.73 4.42
498 499 4.224433 ACGTATATCCGCAAACAGATACG 58.776 43.478 9.89 9.89 44.64 3.06
499 500 7.627585 TTAACGTATATCCGCAAACAGATAC 57.372 36.000 0.00 0.00 0.00 2.24
500 501 7.329962 CCATTAACGTATATCCGCAAACAGATA 59.670 37.037 0.00 0.00 0.00 1.98
501 502 6.147164 CCATTAACGTATATCCGCAAACAGAT 59.853 38.462 0.00 0.00 0.00 2.90
502 503 5.464057 CCATTAACGTATATCCGCAAACAGA 59.536 40.000 0.00 0.00 0.00 3.41
503 504 5.333798 CCCATTAACGTATATCCGCAAACAG 60.334 44.000 0.00 0.00 0.00 3.16
504 505 4.512198 CCCATTAACGTATATCCGCAAACA 59.488 41.667 0.00 0.00 0.00 2.83
505 506 4.612033 GCCCATTAACGTATATCCGCAAAC 60.612 45.833 0.00 0.00 0.00 2.93
506 507 3.499157 GCCCATTAACGTATATCCGCAAA 59.501 43.478 0.00 0.00 0.00 3.68
507 508 3.068560 GCCCATTAACGTATATCCGCAA 58.931 45.455 0.00 0.00 0.00 4.85
508 509 2.037381 TGCCCATTAACGTATATCCGCA 59.963 45.455 0.00 0.00 0.00 5.69
509 510 2.414138 GTGCCCATTAACGTATATCCGC 59.586 50.000 0.00 0.00 0.00 5.54
510 511 3.655486 TGTGCCCATTAACGTATATCCG 58.345 45.455 0.00 0.00 0.00 4.18
511 512 4.142687 GCATGTGCCCATTAACGTATATCC 60.143 45.833 0.00 0.00 34.31 2.59
512 513 4.454161 TGCATGTGCCCATTAACGTATATC 59.546 41.667 2.07 0.00 41.18 1.63
513 514 4.393834 TGCATGTGCCCATTAACGTATAT 58.606 39.130 2.07 0.00 41.18 0.86
514 515 3.809905 TGCATGTGCCCATTAACGTATA 58.190 40.909 2.07 0.00 41.18 1.47
515 516 2.649190 TGCATGTGCCCATTAACGTAT 58.351 42.857 2.07 0.00 41.18 3.06
516 517 2.115343 TGCATGTGCCCATTAACGTA 57.885 45.000 2.07 0.00 41.18 3.57
517 518 1.067915 GTTGCATGTGCCCATTAACGT 60.068 47.619 2.07 0.00 41.18 3.99
518 519 1.627879 GTTGCATGTGCCCATTAACG 58.372 50.000 2.07 0.00 41.18 3.18
519 520 1.067915 ACGTTGCATGTGCCCATTAAC 60.068 47.619 2.07 0.00 41.18 2.01
520 521 1.201181 GACGTTGCATGTGCCCATTAA 59.799 47.619 2.07 0.00 41.18 1.40
521 522 0.808125 GACGTTGCATGTGCCCATTA 59.192 50.000 2.07 0.00 41.18 1.90
522 523 1.177895 TGACGTTGCATGTGCCCATT 61.178 50.000 2.07 0.00 41.18 3.16
523 524 1.177895 TTGACGTTGCATGTGCCCAT 61.178 50.000 2.07 0.00 41.18 4.00
524 525 1.387295 TTTGACGTTGCATGTGCCCA 61.387 50.000 2.07 0.00 41.18 5.36
525 526 0.038343 ATTTGACGTTGCATGTGCCC 60.038 50.000 2.07 0.00 41.18 5.36
526 527 2.518949 CTATTTGACGTTGCATGTGCC 58.481 47.619 2.07 0.00 41.18 5.01
527 528 2.161410 TCCTATTTGACGTTGCATGTGC 59.839 45.455 0.00 0.00 42.50 4.57
528 529 4.621068 ATCCTATTTGACGTTGCATGTG 57.379 40.909 0.00 0.00 0.00 3.21
529 530 4.201812 CGAATCCTATTTGACGTTGCATGT 60.202 41.667 0.00 0.00 0.00 3.21
530 531 4.201812 ACGAATCCTATTTGACGTTGCATG 60.202 41.667 0.00 0.00 0.00 4.06
531 532 3.938963 ACGAATCCTATTTGACGTTGCAT 59.061 39.130 0.00 0.00 0.00 3.96
532 533 3.331150 ACGAATCCTATTTGACGTTGCA 58.669 40.909 0.00 0.00 0.00 4.08
533 534 3.617263 AGACGAATCCTATTTGACGTTGC 59.383 43.478 0.00 0.00 34.26 4.17
534 535 5.220416 GGAAGACGAATCCTATTTGACGTTG 60.220 44.000 0.00 0.00 34.26 4.10
535 536 4.868734 GGAAGACGAATCCTATTTGACGTT 59.131 41.667 0.00 0.00 34.26 3.99
536 537 4.159879 AGGAAGACGAATCCTATTTGACGT 59.840 41.667 6.62 0.00 45.51 4.34
537 538 4.683832 AGGAAGACGAATCCTATTTGACG 58.316 43.478 6.62 0.00 45.51 4.35
538 539 6.594159 TCAAAGGAAGACGAATCCTATTTGAC 59.406 38.462 13.76 0.00 46.65 3.18
539 540 6.707290 TCAAAGGAAGACGAATCCTATTTGA 58.293 36.000 13.76 13.76 46.65 2.69
540 541 6.985188 TCAAAGGAAGACGAATCCTATTTG 57.015 37.500 8.44 9.92 46.65 2.32
541 542 8.894768 CTATCAAAGGAAGACGAATCCTATTT 57.105 34.615 8.44 0.00 46.65 1.40
566 567 2.299326 AATGGGCATATGGAAGAGCC 57.701 50.000 4.56 0.00 46.28 4.70
606 607 1.985614 CTCCAGACCACATGGCAGA 59.014 57.895 0.00 0.00 37.76 4.26
619 622 4.861102 AAATTTTCAAGTCAGGCTCCAG 57.139 40.909 0.00 0.00 0.00 3.86
670 673 6.009908 TGTGGGATGAATCATTCTCAAGAT 57.990 37.500 1.02 0.00 0.00 2.40
671 674 5.440207 TGTGGGATGAATCATTCTCAAGA 57.560 39.130 1.02 0.00 0.00 3.02
672 675 6.519679 TTTGTGGGATGAATCATTCTCAAG 57.480 37.500 1.02 0.00 0.00 3.02
673 676 5.105635 GCTTTGTGGGATGAATCATTCTCAA 60.106 40.000 1.02 5.29 0.00 3.02
674 677 4.400251 GCTTTGTGGGATGAATCATTCTCA 59.600 41.667 1.02 0.00 0.00 3.27
675 678 4.400251 TGCTTTGTGGGATGAATCATTCTC 59.600 41.667 1.02 0.00 0.00 2.87
676 679 4.346730 TGCTTTGTGGGATGAATCATTCT 58.653 39.130 1.02 0.00 0.00 2.40
707 710 7.272037 ACACTTTTACTTCATTTGGTACAGG 57.728 36.000 0.00 0.00 42.39 4.00
1302 1348 3.518998 AGGATCTCCGTCGTGCCG 61.519 66.667 0.00 0.00 42.08 5.69
1458 1504 1.791103 CGACAAACGTGGCCACCATT 61.791 55.000 29.95 20.98 35.28 3.16
1590 1636 2.672996 GCCCATCCGCACTGTTGT 60.673 61.111 0.00 0.00 0.00 3.32
1645 1691 2.898729 ATTCTCCACTCGGTGCATAG 57.101 50.000 0.00 0.00 31.34 2.23
1668 1714 3.135225 CGAACAATATGACGGCCCAATA 58.865 45.455 0.00 0.00 0.00 1.90
1706 1752 1.064017 AGCTTGGACCAAAACTCCACA 60.064 47.619 8.59 0.00 37.54 4.17
1808 1877 6.619801 ACACTGTACCTTCATGAAAAGTTC 57.380 37.500 9.88 8.45 0.00 3.01
1823 1892 7.814587 ACGTAGGGAGTATTTTTAACACTGTAC 59.185 37.037 0.00 0.00 0.00 2.90
1830 1899 7.656707 TGTGAACGTAGGGAGTATTTTTAAC 57.343 36.000 0.00 0.00 0.00 2.01
1915 1984 7.545362 AGATATACGTACGTTCTAGTGTGTT 57.455 36.000 27.92 2.90 0.00 3.32
1916 1985 8.706936 CATAGATATACGTACGTTCTAGTGTGT 58.293 37.037 27.92 9.18 0.00 3.72
1917 1986 8.706936 ACATAGATATACGTACGTTCTAGTGTG 58.293 37.037 27.92 21.27 0.00 3.82
1918 1987 8.824159 ACATAGATATACGTACGTTCTAGTGT 57.176 34.615 27.92 23.70 0.00 3.55
1923 1992 9.914131 TGTACTACATAGATATACGTACGTTCT 57.086 33.333 27.92 23.87 31.08 3.01
1990 2059 5.163237 GCACCTTTATATGTTACTCCCTCCA 60.163 44.000 0.00 0.00 0.00 3.86
1991 2060 5.163237 TGCACCTTTATATGTTACTCCCTCC 60.163 44.000 0.00 0.00 0.00 4.30
2034 2109 9.064706 AGATATCAAAATGCTCTAGGATGTTTG 57.935 33.333 5.32 10.17 31.84 2.93
2173 2249 4.224991 TCTGATGCATTGACATTCCTCA 57.775 40.909 0.00 0.00 0.00 3.86
2238 2314 8.047310 AGAGAAAGAGAAGGTACTGAAAACAAA 58.953 33.333 0.00 0.00 40.86 2.83
2585 2662 0.466189 GGGCTTTGGCTGCTAGCATA 60.466 55.000 19.72 5.06 44.75 3.14
2587 2664 2.361610 GGGCTTTGGCTGCTAGCA 60.362 61.111 18.22 18.22 44.75 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.