Multiple sequence alignment - TraesCS3A01G166900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G166900 chr3A 100.000 2794 0 0 1 2794 171254688 171257481 0.000000e+00 5160.0
1 TraesCS3A01G166900 chr3D 92.575 2276 103 36 547 2794 156972561 156970324 0.000000e+00 3206.0
2 TraesCS3A01G166900 chr3D 76.075 372 86 3 4 374 365335590 365335221 1.020000e-44 191.0
3 TraesCS3A01G166900 chr3B 89.120 1829 99 37 592 2390 228089839 228088081 0.000000e+00 2183.0
4 TraesCS3A01G166900 chr3B 94.366 71 4 0 2662 2732 227868878 227868808 2.940000e-20 110.0
5 TraesCS3A01G166900 chr3B 100.000 28 0 0 2510 2537 818290045 818290072 5.000000e-03 52.8
6 TraesCS3A01G166900 chr6D 93.116 552 35 2 1 551 121296330 121296879 0.000000e+00 806.0
7 TraesCS3A01G166900 chr6B 89.362 329 35 0 223 551 665104604 665104932 5.570000e-112 414.0
8 TraesCS3A01G166900 chr6B 89.381 226 22 2 1 225 665102869 665103093 1.640000e-72 283.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G166900 chr3A 171254688 171257481 2793 False 5160.0 5160 100.0000 1 2794 1 chr3A.!!$F1 2793
1 TraesCS3A01G166900 chr3D 156970324 156972561 2237 True 3206.0 3206 92.5750 547 2794 1 chr3D.!!$R1 2247
2 TraesCS3A01G166900 chr3B 228088081 228089839 1758 True 2183.0 2183 89.1200 592 2390 1 chr3B.!!$R2 1798
3 TraesCS3A01G166900 chr6D 121296330 121296879 549 False 806.0 806 93.1160 1 551 1 chr6D.!!$F1 550
4 TraesCS3A01G166900 chr6B 665102869 665104932 2063 False 348.5 414 89.3715 1 551 2 chr6B.!!$F1 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
978 2516 0.103572 GGCGGTATTCTGCGGAAGTA 59.896 55.0 14.43 4.01 46.03 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1798 3354 0.25064 AGGCGTACGTATCCTCCGAT 60.251 55.0 17.9 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 1.974265 TGTGTTCCTCAAATTCGGCA 58.026 45.000 0.00 0.00 0.00 5.69
89 90 0.676466 ATTCGGCAAGAATCACCGCA 60.676 50.000 4.79 0.00 45.95 5.69
110 112 3.502191 TTTTTATTCAGATGCCACGGC 57.498 42.857 0.00 0.00 42.35 5.68
116 118 3.469970 AGATGCCACGGCGATCCA 61.470 61.111 16.62 7.28 45.51 3.41
137 139 0.393077 CCCAAACACGGTCTCTGTCT 59.607 55.000 0.00 0.00 0.00 3.41
161 163 1.138069 TGGTTCTCAAACTCAGCGACA 59.862 47.619 0.00 0.00 35.61 4.35
185 187 2.246761 TATTGGGTCCAACCGAGCGG 62.247 60.000 7.48 7.48 39.83 5.52
252 1767 6.771934 TGGTAATGGTATGGATGTGGAATA 57.228 37.500 0.00 0.00 0.00 1.75
254 1769 6.560687 TGGTAATGGTATGGATGTGGAATAGA 59.439 38.462 0.00 0.00 0.00 1.98
275 1790 5.186198 AGATTCCTGTGAAGGATTTTACCG 58.814 41.667 0.00 0.00 37.87 4.02
344 1859 2.291741 CAGTGGTGTTGCTTCTTCTTCC 59.708 50.000 0.00 0.00 0.00 3.46
355 1870 4.081142 TGCTTCTTCTTCCGATATGTCCAA 60.081 41.667 0.00 0.00 0.00 3.53
374 1889 1.852157 ATTTCCCCAGCGCTTCCTCA 61.852 55.000 7.50 0.00 0.00 3.86
403 1918 1.051812 CTTGCCGATCTAGGGGACAT 58.948 55.000 0.00 0.00 0.00 3.06
494 2009 2.048690 GCTCCGCCGATGAGATCC 60.049 66.667 0.00 0.00 31.26 3.36
531 2046 0.886563 CCACGTCGAAACCCTAGTCT 59.113 55.000 0.00 0.00 0.00 3.24
558 2073 4.442192 CCAAGAGCGCTCCTAGAAAGTTAT 60.442 45.833 32.94 7.72 0.00 1.89
559 2074 5.221263 CCAAGAGCGCTCCTAGAAAGTTATA 60.221 44.000 32.94 0.00 0.00 0.98
560 2075 6.451393 CAAGAGCGCTCCTAGAAAGTTATAT 58.549 40.000 32.94 7.02 0.00 0.86
561 2076 6.262193 AGAGCGCTCCTAGAAAGTTATATC 57.738 41.667 32.94 3.35 0.00 1.63
648 2173 1.901085 GTAGGGAGAGGCACCACAG 59.099 63.158 0.00 0.00 0.00 3.66
652 2177 2.217038 GGAGAGGCACCACAGGACA 61.217 63.158 0.00 0.00 0.00 4.02
655 2180 3.909086 GAGGCACCACAGGACAGCC 62.909 68.421 9.66 9.66 45.54 4.85
674 2199 2.555123 GCAGCACGAAATCCTCCAA 58.445 52.632 0.00 0.00 0.00 3.53
675 2200 1.098050 GCAGCACGAAATCCTCCAAT 58.902 50.000 0.00 0.00 0.00 3.16
693 2218 0.393537 ATGCTCGGCTCCTTTCCTTG 60.394 55.000 0.00 0.00 0.00 3.61
707 2232 2.750350 CTTGGTCCGCAAGTCCCT 59.250 61.111 0.00 0.00 0.00 4.20
709 2234 2.804828 CTTGGTCCGCAAGTCCCTCC 62.805 65.000 0.00 0.00 0.00 4.30
710 2235 4.097361 GGTCCGCAAGTCCCTCCC 62.097 72.222 0.00 0.00 0.00 4.30
711 2236 3.319198 GTCCGCAAGTCCCTCCCA 61.319 66.667 0.00 0.00 0.00 4.37
712 2237 3.319198 TCCGCAAGTCCCTCCCAC 61.319 66.667 0.00 0.00 0.00 4.61
713 2238 4.410400 CCGCAAGTCCCTCCCACC 62.410 72.222 0.00 0.00 0.00 4.61
714 2239 4.410400 CGCAAGTCCCTCCCACCC 62.410 72.222 0.00 0.00 0.00 4.61
715 2240 3.256960 GCAAGTCCCTCCCACCCA 61.257 66.667 0.00 0.00 0.00 4.51
716 2241 2.757077 CAAGTCCCTCCCACCCAC 59.243 66.667 0.00 0.00 0.00 4.61
746 2276 0.605589 CACCCGGAGTTGTTCTTCCC 60.606 60.000 0.73 0.00 0.00 3.97
754 2284 2.902457 TTGTTCTTCCCTCCGGGCC 61.902 63.158 0.00 0.00 43.94 5.80
820 2350 1.968017 CCCGCGCCTCATGCATATT 60.968 57.895 0.00 0.00 41.33 1.28
832 2362 6.128200 GCCTCATGCATATTCATTCGTTCATA 60.128 38.462 0.00 0.00 40.77 2.15
902 2440 5.829924 CAGGCATTCCATTCCAGTATTTACT 59.170 40.000 0.00 0.00 33.60 2.24
903 2441 5.829924 AGGCATTCCATTCCAGTATTTACTG 59.170 40.000 10.20 10.20 43.08 2.74
904 2442 6.353864 AGGCATTCCATTCCAGTATTTACTGA 60.354 38.462 17.30 1.17 44.64 3.41
905 2443 7.641111 AGGCATTCCATTCCAGTATTTACTGAT 60.641 37.037 17.30 3.33 44.64 2.90
947 2485 0.247894 GCGACAGAGAGCTCGTGTAG 60.248 60.000 20.72 20.63 32.30 2.74
978 2516 0.103572 GGCGGTATTCTGCGGAAGTA 59.896 55.000 14.43 4.01 46.03 2.24
1160 2703 2.335712 GCTCGCCCCAAACCTCAAG 61.336 63.158 0.00 0.00 0.00 3.02
1169 2712 1.544759 CCAAACCTCAAGGCCGTAGTT 60.545 52.381 0.00 0.00 39.32 2.24
1170 2713 2.289819 CCAAACCTCAAGGCCGTAGTTA 60.290 50.000 0.00 0.00 39.32 2.24
1171 2714 3.000727 CAAACCTCAAGGCCGTAGTTAG 58.999 50.000 0.00 0.00 39.32 2.34
1172 2715 1.934410 ACCTCAAGGCCGTAGTTAGT 58.066 50.000 0.00 0.00 39.32 2.24
1173 2716 2.254508 ACCTCAAGGCCGTAGTTAGTT 58.745 47.619 0.00 0.00 39.32 2.24
1204 2751 1.688197 AGCCCAGTTGTTGATTTGTGG 59.312 47.619 0.00 0.00 0.00 4.17
1441 2988 1.071471 CCTAGCCATGGGGTAAGCG 59.929 63.158 15.13 0.00 35.13 4.68
1464 3011 1.320555 CGCGTTTCTCAGATTACACCG 59.679 52.381 0.00 0.00 0.00 4.94
1497 3044 4.147219 CCAAATCAACTCGTTTGGTCTC 57.853 45.455 8.35 0.00 45.84 3.36
1499 3046 4.319766 CCAAATCAACTCGTTTGGTCTCAG 60.320 45.833 8.35 0.00 45.84 3.35
1501 3048 3.093717 TCAACTCGTTTGGTCTCAGAC 57.906 47.619 0.00 0.00 35.69 3.51
1502 3049 2.693591 TCAACTCGTTTGGTCTCAGACT 59.306 45.455 4.40 0.00 35.69 3.24
1506 3053 4.142790 ACTCGTTTGGTCTCAGACTCTTA 58.857 43.478 4.40 0.00 32.47 2.10
1507 3054 4.023021 ACTCGTTTGGTCTCAGACTCTTAC 60.023 45.833 4.40 0.00 32.47 2.34
1508 3055 3.255149 TCGTTTGGTCTCAGACTCTTACC 59.745 47.826 4.40 0.00 32.47 2.85
1549 3098 1.477685 AATTGCTGCAGGCTGGCTTT 61.478 50.000 17.12 7.51 42.39 3.51
1612 3161 0.476771 TTCCTCCCGCTTTTGTCCTT 59.523 50.000 0.00 0.00 0.00 3.36
1615 3164 0.890996 CTCCCGCTTTTGTCCTTGCT 60.891 55.000 0.00 0.00 0.00 3.91
1637 3186 5.730010 GCTCTGTACTTCGTCAGGTACATAC 60.730 48.000 6.43 0.00 44.46 2.39
1647 3200 3.924686 GTCAGGTACATACGGTTTGTGAG 59.075 47.826 13.46 2.51 0.00 3.51
1656 3209 2.571212 ACGGTTTGTGAGCTGATCAAA 58.429 42.857 0.00 0.00 40.43 2.69
1670 3223 0.598065 ATCAAAACGCTCTGGGTTGC 59.402 50.000 0.96 0.00 38.65 4.17
1703 3256 3.255379 GCGTTCACGATCGCCCTC 61.255 66.667 16.60 2.99 45.54 4.30
1851 3414 1.497722 CGCCGGAGAAAGTTTGCTC 59.502 57.895 5.05 0.00 0.00 4.26
1876 3440 2.524699 GTCGTTGTGCTTTTCGTTTGAC 59.475 45.455 0.00 0.00 0.00 3.18
1909 3473 2.806434 TGAGTGGGATTGGTGAAATGG 58.194 47.619 0.00 0.00 0.00 3.16
1986 3550 4.994907 TTGATGAATTCAAGCATCTGGG 57.005 40.909 13.09 0.00 39.44 4.45
2077 3645 6.016276 AGAGAGCTTCTTCTCCGATTTCTATC 60.016 42.308 0.00 0.00 43.74 2.08
2148 3717 7.524294 AAATAAAAACAATGACGCATGATCC 57.476 32.000 0.00 0.00 0.00 3.36
2258 3827 0.736325 CCCTGTGAAGTAAGCCGTCG 60.736 60.000 0.00 0.00 0.00 5.12
2330 3899 5.176958 GGGATAAATCGACAAACTACCGATG 59.823 44.000 0.00 0.00 41.49 3.84
2336 3905 0.623723 ACAAACTACCGATGCCCCAT 59.376 50.000 0.00 0.00 0.00 4.00
2338 3907 2.158813 ACAAACTACCGATGCCCCATAG 60.159 50.000 0.00 0.00 0.00 2.23
2388 3959 2.200092 TCCACAAGCCAAACCCCC 59.800 61.111 0.00 0.00 0.00 5.40
2472 4044 4.870363 TGCTTAAAGACTTCATTGGCAAC 58.130 39.130 0.00 0.00 0.00 4.17
2518 4090 7.169158 TCACTTCATTGTTCCTTGTCTTTTT 57.831 32.000 0.00 0.00 0.00 1.94
2541 4113 9.434420 TTTTGGGTTTATCTGCAAAATATTCTG 57.566 29.630 0.00 0.00 0.00 3.02
2574 4146 6.203530 AGCCACATAATAATCAGATTGACACG 59.796 38.462 5.85 0.00 0.00 4.49
2670 4243 4.199310 CAGATACACCAACCATAACCAGG 58.801 47.826 0.00 0.00 0.00 4.45
2712 4287 6.478129 ACCTCGGTATCCAAAGATTAAACAA 58.522 36.000 0.00 0.00 33.67 2.83
2729 4304 7.655236 TTAAACAAATCATGAACATTGCCAG 57.345 32.000 15.28 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.373812 GACCGGCTACAGGTTTGGT 59.626 57.895 0.00 0.00 43.01 3.67
77 78 7.156876 TCTGAATAAAAATGCGGTGATTCTT 57.843 32.000 0.00 0.00 0.00 2.52
89 90 3.489059 CGCCGTGGCATCTGAATAAAAAT 60.489 43.478 12.06 0.00 42.06 1.82
110 112 2.038269 CCGTGTTTGGGGTGGATCG 61.038 63.158 0.00 0.00 0.00 3.69
116 118 1.342672 ACAGAGACCGTGTTTGGGGT 61.343 55.000 0.00 0.00 39.83 4.95
137 139 2.288457 CGCTGAGTTTGAGAACCAGAGA 60.288 50.000 0.00 0.00 36.72 3.10
161 163 3.352648 CTCGGTTGGACCCAATATGTTT 58.647 45.455 4.63 0.00 38.28 2.83
344 1859 2.554032 GCTGGGGAAATTGGACATATCG 59.446 50.000 0.00 0.00 0.00 2.92
355 1870 1.077429 GAGGAAGCGCTGGGGAAAT 60.077 57.895 12.58 0.00 0.00 2.17
374 1889 0.603065 GATCGGCAAGGGCAAAACTT 59.397 50.000 0.00 0.00 43.71 2.66
403 1918 1.075482 CAGAAAGAGCAAGGGGCCA 59.925 57.895 4.39 0.00 46.50 5.36
459 1974 1.447140 CGCTTGGGGAATTCGTCGA 60.447 57.895 0.00 0.00 0.00 4.20
560 2075 0.179181 GTGTAGTTCGTCGATGCCGA 60.179 55.000 0.00 0.00 43.35 5.54
561 2076 0.455464 TGTGTAGTTCGTCGATGCCG 60.455 55.000 0.00 0.00 37.07 5.69
652 2177 3.127533 GGATTTCGTGCTGCGGCT 61.128 61.111 20.27 0.00 41.72 5.52
655 2180 1.298157 TTGGAGGATTTCGTGCTGCG 61.298 55.000 0.00 0.00 39.53 5.18
674 2199 0.393537 CAAGGAAAGGAGCCGAGCAT 60.394 55.000 0.00 0.00 0.00 3.79
675 2200 1.003355 CAAGGAAAGGAGCCGAGCA 60.003 57.895 0.00 0.00 0.00 4.26
693 2218 4.097361 GGGAGGGACTTGCGGACC 62.097 72.222 0.00 0.00 41.55 4.46
707 2232 0.690762 GCTGTAAAGAGTGGGTGGGA 59.309 55.000 0.00 0.00 0.00 4.37
709 2234 0.400213 TGGCTGTAAAGAGTGGGTGG 59.600 55.000 0.00 0.00 0.00 4.61
710 2235 1.523758 GTGGCTGTAAAGAGTGGGTG 58.476 55.000 0.00 0.00 0.00 4.61
711 2236 0.400594 GGTGGCTGTAAAGAGTGGGT 59.599 55.000 0.00 0.00 0.00 4.51
712 2237 0.322546 GGGTGGCTGTAAAGAGTGGG 60.323 60.000 0.00 0.00 0.00 4.61
713 2238 0.673644 CGGGTGGCTGTAAAGAGTGG 60.674 60.000 0.00 0.00 0.00 4.00
714 2239 0.673644 CCGGGTGGCTGTAAAGAGTG 60.674 60.000 0.00 0.00 0.00 3.51
715 2240 0.834687 TCCGGGTGGCTGTAAAGAGT 60.835 55.000 0.00 0.00 34.14 3.24
716 2241 0.108138 CTCCGGGTGGCTGTAAAGAG 60.108 60.000 0.00 0.00 34.14 2.85
832 2362 6.742109 ACGGCTTCGCGGTTTATATATATAT 58.258 36.000 6.13 10.10 38.94 0.86
839 2369 0.528249 GGACGGCTTCGCGGTTTATA 60.528 55.000 6.13 0.00 41.92 0.98
849 2379 1.878953 TTCAGAAACTGGACGGCTTC 58.121 50.000 0.00 0.00 31.51 3.86
903 2441 1.936547 GGTCTGACGATTGAGGCAATC 59.063 52.381 9.50 9.50 44.57 2.67
904 2442 1.278985 TGGTCTGACGATTGAGGCAAT 59.721 47.619 1.07 0.00 36.72 3.56
905 2443 0.684535 TGGTCTGACGATTGAGGCAA 59.315 50.000 1.07 0.00 0.00 4.52
978 2516 2.870372 GCCGGACGTACGTACTGT 59.130 61.111 27.06 20.32 0.00 3.55
1089 2627 1.635663 GGTCGATGGCCAAGTTGACG 61.636 60.000 10.96 9.38 30.93 4.35
1150 2693 1.892209 AACTACGGCCTTGAGGTTTG 58.108 50.000 0.00 0.00 37.57 2.93
1160 2703 2.426381 AGCTCTGTAACTAACTACGGCC 59.574 50.000 0.00 0.00 0.00 6.13
1169 2712 3.556999 CTGGGCTCTAGCTCTGTAACTA 58.443 50.000 3.07 0.00 43.37 2.24
1170 2713 2.383855 CTGGGCTCTAGCTCTGTAACT 58.616 52.381 3.07 0.00 43.37 2.24
1171 2714 2.880963 CTGGGCTCTAGCTCTGTAAC 57.119 55.000 3.07 0.00 43.37 2.50
1441 2988 0.314339 GTAATCTGAGAAACGCGCGC 60.314 55.000 32.58 23.91 0.00 6.86
1455 3002 4.579340 TGGTAGAGATGAGACGGTGTAATC 59.421 45.833 0.00 0.00 0.00 1.75
1464 3011 5.746245 CGAGTTGATTTGGTAGAGATGAGAC 59.254 44.000 0.00 0.00 0.00 3.36
1497 3044 5.941555 ATAAGGTTCAGGGTAAGAGTCTG 57.058 43.478 0.00 0.00 0.00 3.51
1499 3046 7.598759 TGATATAAGGTTCAGGGTAAGAGTC 57.401 40.000 0.00 0.00 0.00 3.36
1501 3048 7.235606 TCCATGATATAAGGTTCAGGGTAAGAG 59.764 40.741 0.00 0.00 42.81 2.85
1502 3049 7.079700 TCCATGATATAAGGTTCAGGGTAAGA 58.920 38.462 0.00 0.00 42.81 2.10
1506 3053 7.888514 TTATCCATGATATAAGGTTCAGGGT 57.111 36.000 0.00 0.00 42.81 4.34
1507 3054 9.759473 AATTTATCCATGATATAAGGTTCAGGG 57.241 33.333 0.00 0.00 43.44 4.45
1549 3098 1.825474 GGTCGAAACTGATCTCCTGGA 59.175 52.381 0.00 0.00 0.00 3.86
1637 3186 3.300009 GTTTTGATCAGCTCACAAACCG 58.700 45.455 7.04 0.00 33.49 4.44
1647 3200 0.449388 CCCAGAGCGTTTTGATCAGC 59.551 55.000 0.00 0.00 34.70 4.26
1670 3223 3.813724 GCCTCCATGGTCCCCTGG 61.814 72.222 12.58 6.92 38.35 4.45
1798 3354 0.250640 AGGCGTACGTATCCTCCGAT 60.251 55.000 17.90 0.00 0.00 4.18
1851 3414 1.101454 CGAAAAGCACAACGACAACG 58.899 50.000 0.00 0.00 45.75 4.10
1876 3440 3.599343 TCCCACTCAAAGAATCATCACG 58.401 45.455 0.00 0.00 0.00 4.35
1909 3473 2.118313 ATTACTACAACGCCAACCCC 57.882 50.000 0.00 0.00 0.00 4.95
1986 3550 5.106712 TGCACGTCCTAACAAATCAGATTTC 60.107 40.000 5.32 0.00 0.00 2.17
2045 3613 7.406031 TCGGAGAAGAAGCTCTCTTTATTAA 57.594 36.000 11.00 0.00 44.82 1.40
2049 3617 5.923733 AATCGGAGAAGAAGCTCTCTTTA 57.076 39.130 11.00 0.00 44.82 1.85
2050 3618 4.817318 AATCGGAGAAGAAGCTCTCTTT 57.183 40.909 11.00 4.06 44.82 2.52
2060 3628 7.646548 TTCTCTTGATAGAAATCGGAGAAGA 57.353 36.000 14.14 0.00 42.27 2.87
2077 3645 7.113965 GCTGTAACAACATTGTGATTTCTCTTG 59.886 37.037 0.00 0.00 41.31 3.02
2136 3704 6.329496 GGAAAATAAAAAGGATCATGCGTCA 58.671 36.000 0.00 0.00 0.00 4.35
2148 3717 9.774742 CTGAGGTTATCTTCGGAAAATAAAAAG 57.225 33.333 0.00 0.00 0.00 2.27
2258 3827 5.106515 GGTGTTTCTCATCTTGCTCCTTTAC 60.107 44.000 0.00 0.00 0.00 2.01
2294 3863 6.316140 TGTCGATTTATCCCTTTGTGATCTTG 59.684 38.462 0.00 0.00 0.00 3.02
2330 3899 0.912486 AGTCTGTTGGTCTATGGGGC 59.088 55.000 0.00 0.00 0.00 5.80
2336 3905 3.907474 TGGATTTGGAGTCTGTTGGTCTA 59.093 43.478 0.00 0.00 0.00 2.59
2338 3907 2.814336 GTGGATTTGGAGTCTGTTGGTC 59.186 50.000 0.00 0.00 0.00 4.02
2472 4044 2.360165 GGCATAAGAATGGTTGAGCTGG 59.640 50.000 0.00 0.00 33.38 4.85
2518 4090 7.953005 TCAGAATATTTTGCAGATAAACCCA 57.047 32.000 1.10 0.00 0.00 4.51
2540 4112 8.596293 TCTGATTATTATGTGGCTACATGATCA 58.404 33.333 24.44 22.12 46.63 2.92
2541 4113 9.610705 ATCTGATTATTATGTGGCTACATGATC 57.389 33.333 24.44 19.50 46.63 2.92
2712 4287 8.873186 TGATATATCTGGCAATGTTCATGATT 57.127 30.769 13.79 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.