Multiple sequence alignment - TraesCS3A01G166200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G166200 chr3A 100.000 2875 0 0 1 2875 171129294 171126420 0.000000e+00 5310
1 TraesCS3A01G166200 chr3D 90.489 1861 108 28 553 2352 157229267 157231119 0.000000e+00 2392
2 TraesCS3A01G166200 chr3D 84.925 199 23 5 175 368 94554474 94554278 8.130000e-46 195
3 TraesCS3A01G166200 chr5A 95.310 533 22 1 2346 2875 694553359 694553891 0.000000e+00 843
4 TraesCS3A01G166200 chr5A 95.085 529 21 2 2350 2875 621227309 621226783 0.000000e+00 828
5 TraesCS3A01G166200 chr6A 95.472 530 19 3 2350 2875 602741364 602741892 0.000000e+00 841
6 TraesCS3A01G166200 chr7A 95.274 529 22 1 2350 2875 95228636 95228108 0.000000e+00 835
7 TraesCS3A01G166200 chr7A 95.094 530 22 2 2349 2875 95235812 95235284 0.000000e+00 832
8 TraesCS3A01G166200 chr7A 95.256 527 22 1 2352 2875 690772491 690773017 0.000000e+00 832
9 TraesCS3A01G166200 chr2A 95.265 528 24 1 2349 2875 770407597 770408124 0.000000e+00 835
10 TraesCS3A01G166200 chr2A 95.256 527 24 1 2349 2875 408506640 408507165 0.000000e+00 833
11 TraesCS3A01G166200 chrUn 94.906 530 23 2 2349 2875 82678564 82679092 0.000000e+00 826
12 TraesCS3A01G166200 chr2D 86.010 193 21 5 175 362 128025960 128025769 4.860000e-48 202
13 TraesCS3A01G166200 chr7B 85.492 193 22 5 175 362 600450538 600450347 2.260000e-46 196
14 TraesCS3A01G166200 chr6B 84.848 198 23 6 175 366 612537108 612537304 2.920000e-45 193
15 TraesCS3A01G166200 chr1A 84.848 198 23 6 175 366 440899257 440899061 2.920000e-45 193
16 TraesCS3A01G166200 chr1B 84.456 193 24 6 175 362 330137923 330138114 4.890000e-43 185
17 TraesCS3A01G166200 chr1B 82.902 193 26 7 175 362 328636430 328636620 1.770000e-37 167
18 TraesCS3A01G166200 chr4B 82.812 192 28 4 175 362 173325289 173325479 1.770000e-37 167
19 TraesCS3A01G166200 chr2B 82.234 197 28 7 175 365 229215614 229215419 2.290000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G166200 chr3A 171126420 171129294 2874 True 5310 5310 100.000 1 2875 1 chr3A.!!$R1 2874
1 TraesCS3A01G166200 chr3D 157229267 157231119 1852 False 2392 2392 90.489 553 2352 1 chr3D.!!$F1 1799
2 TraesCS3A01G166200 chr5A 694553359 694553891 532 False 843 843 95.310 2346 2875 1 chr5A.!!$F1 529
3 TraesCS3A01G166200 chr5A 621226783 621227309 526 True 828 828 95.085 2350 2875 1 chr5A.!!$R1 525
4 TraesCS3A01G166200 chr6A 602741364 602741892 528 False 841 841 95.472 2350 2875 1 chr6A.!!$F1 525
5 TraesCS3A01G166200 chr7A 95228108 95228636 528 True 835 835 95.274 2350 2875 1 chr7A.!!$R1 525
6 TraesCS3A01G166200 chr7A 95235284 95235812 528 True 832 832 95.094 2349 2875 1 chr7A.!!$R2 526
7 TraesCS3A01G166200 chr7A 690772491 690773017 526 False 832 832 95.256 2352 2875 1 chr7A.!!$F1 523
8 TraesCS3A01G166200 chr2A 770407597 770408124 527 False 835 835 95.265 2349 2875 1 chr2A.!!$F2 526
9 TraesCS3A01G166200 chr2A 408506640 408507165 525 False 833 833 95.256 2349 2875 1 chr2A.!!$F1 526
10 TraesCS3A01G166200 chrUn 82678564 82679092 528 False 826 826 94.906 2349 2875 1 chrUn.!!$F1 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
326 327 0.033699 ATGGAAAAGCTGGGGAGAGC 60.034 55.0 0.00 0.00 39.46 4.09 F
337 338 0.106669 GGGGAGAGCCGGCTTATTTT 60.107 55.0 33.34 14.13 33.83 1.82 F
1052 1073 0.179056 CCATGGCCAGTAACCCTACG 60.179 60.0 13.05 0.00 32.87 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1653 1683 0.028242 CTTCGGTCGATCTCCTCACG 59.972 60.0 0.00 0.00 0.00 4.35 R
1705 1735 0.187606 ATGACATGCCATGAGCCCAT 59.812 50.0 12.53 6.29 42.71 4.00 R
2345 2405 0.107643 GCTGGAGATGCCCTTAGTCC 59.892 60.0 0.00 0.00 34.97 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.894919 AAGGCAATGCATTCCGGC 59.105 55.556 9.53 11.97 0.00 6.13
48 49 7.713764 AAAAATGAACATGGCAAAGTAGAAC 57.286 32.000 0.00 0.00 0.00 3.01
49 50 6.403866 AAATGAACATGGCAAAGTAGAACA 57.596 33.333 0.00 0.00 0.00 3.18
50 51 4.829064 TGAACATGGCAAAGTAGAACAC 57.171 40.909 0.00 0.00 0.00 3.32
51 52 4.460263 TGAACATGGCAAAGTAGAACACT 58.540 39.130 0.00 0.00 40.05 3.55
52 53 5.616270 TGAACATGGCAAAGTAGAACACTA 58.384 37.500 0.00 0.00 36.04 2.74
53 54 5.468746 TGAACATGGCAAAGTAGAACACTAC 59.531 40.000 0.00 0.00 36.04 2.73
54 55 4.324267 ACATGGCAAAGTAGAACACTACC 58.676 43.478 0.00 0.00 36.04 3.18
55 56 4.202419 ACATGGCAAAGTAGAACACTACCA 60.202 41.667 0.00 0.00 38.51 3.25
56 57 4.634012 TGGCAAAGTAGAACACTACCAT 57.366 40.909 0.00 0.00 36.04 3.55
57 58 5.748670 TGGCAAAGTAGAACACTACCATA 57.251 39.130 0.00 0.00 36.04 2.74
58 59 5.730550 TGGCAAAGTAGAACACTACCATAG 58.269 41.667 0.00 0.00 36.04 2.23
59 60 5.116882 GGCAAAGTAGAACACTACCATAGG 58.883 45.833 0.00 0.00 36.04 2.57
60 61 4.571176 GCAAAGTAGAACACTACCATAGGC 59.429 45.833 0.00 0.00 36.04 3.93
61 62 5.627040 GCAAAGTAGAACACTACCATAGGCT 60.627 44.000 0.00 0.00 36.04 4.58
62 63 6.406624 GCAAAGTAGAACACTACCATAGGCTA 60.407 42.308 0.00 0.00 36.04 3.93
63 64 6.712179 AAGTAGAACACTACCATAGGCTAC 57.288 41.667 0.00 0.00 36.04 3.58
64 65 5.763355 AGTAGAACACTACCATAGGCTACA 58.237 41.667 0.00 0.00 37.72 2.74
65 66 6.374588 AGTAGAACACTACCATAGGCTACAT 58.625 40.000 0.00 0.00 37.72 2.29
66 67 5.537300 AGAACACTACCATAGGCTACATG 57.463 43.478 0.00 0.00 0.00 3.21
67 68 3.753294 ACACTACCATAGGCTACATGC 57.247 47.619 0.00 0.00 41.94 4.06
68 69 9.815996 GTAGAACACTACCATAGGCTACATGCC 62.816 48.148 0.00 0.00 44.05 4.40
76 77 3.799753 GCTACATGCCTCCACACG 58.200 61.111 0.00 0.00 35.15 4.49
77 78 1.218047 GCTACATGCCTCCACACGA 59.782 57.895 0.00 0.00 35.15 4.35
78 79 0.179073 GCTACATGCCTCCACACGAT 60.179 55.000 0.00 0.00 35.15 3.73
79 80 1.858091 CTACATGCCTCCACACGATC 58.142 55.000 0.00 0.00 0.00 3.69
80 81 0.102300 TACATGCCTCCACACGATCG 59.898 55.000 14.88 14.88 0.00 3.69
81 82 2.202932 ATGCCTCCACACGATCGC 60.203 61.111 16.60 0.00 0.00 4.58
82 83 3.017771 ATGCCTCCACACGATCGCA 62.018 57.895 16.60 2.20 32.06 5.10
83 84 2.202932 GCCTCCACACGATCGCAT 60.203 61.111 16.60 0.00 0.00 4.73
84 85 2.528743 GCCTCCACACGATCGCATG 61.529 63.158 16.60 13.49 0.00 4.06
85 86 2.528743 CCTCCACACGATCGCATGC 61.529 63.158 16.60 7.91 0.00 4.06
86 87 1.810853 CTCCACACGATCGCATGCA 60.811 57.895 19.57 5.34 0.00 3.96
87 88 2.028766 CTCCACACGATCGCATGCAC 62.029 60.000 19.57 7.45 0.00 4.57
88 89 2.020423 CACACGATCGCATGCACG 59.980 61.111 19.57 20.59 0.00 5.34
89 90 3.188100 ACACGATCGCATGCACGG 61.188 61.111 24.62 17.96 0.00 4.94
90 91 3.928769 CACGATCGCATGCACGGG 61.929 66.667 24.62 20.05 0.00 5.28
91 92 4.451150 ACGATCGCATGCACGGGT 62.451 61.111 24.62 12.88 0.00 5.28
92 93 3.928769 CGATCGCATGCACGGGTG 61.929 66.667 19.57 0.00 0.00 4.61
104 105 2.295253 CACGGGTGCTTTAGAGTAGG 57.705 55.000 0.00 0.00 0.00 3.18
105 106 1.134788 CACGGGTGCTTTAGAGTAGGG 60.135 57.143 0.00 0.00 0.00 3.53
106 107 0.464452 CGGGTGCTTTAGAGTAGGGG 59.536 60.000 0.00 0.00 0.00 4.79
107 108 1.581223 GGGTGCTTTAGAGTAGGGGT 58.419 55.000 0.00 0.00 0.00 4.95
108 109 1.209747 GGGTGCTTTAGAGTAGGGGTG 59.790 57.143 0.00 0.00 0.00 4.61
109 110 1.209747 GGTGCTTTAGAGTAGGGGTGG 59.790 57.143 0.00 0.00 0.00 4.61
110 111 1.209747 GTGCTTTAGAGTAGGGGTGGG 59.790 57.143 0.00 0.00 0.00 4.61
111 112 1.203389 TGCTTTAGAGTAGGGGTGGGT 60.203 52.381 0.00 0.00 0.00 4.51
112 113 1.914108 GCTTTAGAGTAGGGGTGGGTT 59.086 52.381 0.00 0.00 0.00 4.11
113 114 3.109928 GCTTTAGAGTAGGGGTGGGTTA 58.890 50.000 0.00 0.00 0.00 2.85
114 115 3.520721 GCTTTAGAGTAGGGGTGGGTTAA 59.479 47.826 0.00 0.00 0.00 2.01
115 116 4.624843 GCTTTAGAGTAGGGGTGGGTTAAC 60.625 50.000 0.00 0.00 0.00 2.01
116 117 1.565067 AGAGTAGGGGTGGGTTAACG 58.435 55.000 0.00 0.00 0.00 3.18
117 118 1.077663 AGAGTAGGGGTGGGTTAACGA 59.922 52.381 0.00 0.00 0.00 3.85
118 119 1.479730 GAGTAGGGGTGGGTTAACGAG 59.520 57.143 0.00 0.00 0.00 4.18
119 120 1.203225 AGTAGGGGTGGGTTAACGAGT 60.203 52.381 0.00 0.00 0.00 4.18
120 121 1.625315 GTAGGGGTGGGTTAACGAGTT 59.375 52.381 0.00 0.00 0.00 3.01
121 122 0.399075 AGGGGTGGGTTAACGAGTTG 59.601 55.000 0.00 0.00 0.00 3.16
122 123 0.109153 GGGGTGGGTTAACGAGTTGT 59.891 55.000 0.00 0.00 0.00 3.32
123 124 1.477377 GGGGTGGGTTAACGAGTTGTT 60.477 52.381 0.44 0.44 44.78 2.83
124 125 1.875514 GGGTGGGTTAACGAGTTGTTC 59.124 52.381 0.00 0.00 42.09 3.18
136 137 4.516092 CGAGTTGTTCGTTTGAAACTCT 57.484 40.909 6.49 0.00 44.27 3.24
137 138 4.893795 CGAGTTGTTCGTTTGAAACTCTT 58.106 39.130 6.49 0.00 44.27 2.85
138 139 5.321516 CGAGTTGTTCGTTTGAAACTCTTT 58.678 37.500 6.49 0.00 44.27 2.52
139 140 6.471839 CGAGTTGTTCGTTTGAAACTCTTTA 58.528 36.000 6.49 0.00 44.27 1.85
140 141 6.957077 CGAGTTGTTCGTTTGAAACTCTTTAA 59.043 34.615 6.49 0.00 44.27 1.52
141 142 7.479291 CGAGTTGTTCGTTTGAAACTCTTTAAA 59.521 33.333 6.49 0.00 44.27 1.52
142 143 8.443898 AGTTGTTCGTTTGAAACTCTTTAAAC 57.556 30.769 6.49 3.92 35.46 2.01
143 144 8.294577 AGTTGTTCGTTTGAAACTCTTTAAACT 58.705 29.630 6.49 5.88 35.46 2.66
144 145 8.572976 GTTGTTCGTTTGAAACTCTTTAAACTC 58.427 33.333 6.49 0.00 35.46 3.01
145 146 7.808672 TGTTCGTTTGAAACTCTTTAAACTCA 58.191 30.769 6.49 0.00 35.46 3.41
146 147 8.455682 TGTTCGTTTGAAACTCTTTAAACTCAT 58.544 29.630 6.49 0.00 35.46 2.90
147 148 8.734030 GTTCGTTTGAAACTCTTTAAACTCATG 58.266 33.333 6.49 0.00 35.46 3.07
148 149 8.203937 TCGTTTGAAACTCTTTAAACTCATGA 57.796 30.769 6.49 0.00 32.41 3.07
149 150 8.670135 TCGTTTGAAACTCTTTAAACTCATGAA 58.330 29.630 6.49 0.00 32.41 2.57
150 151 8.734030 CGTTTGAAACTCTTTAAACTCATGAAC 58.266 33.333 6.49 0.00 32.41 3.18
151 152 8.734030 GTTTGAAACTCTTTAAACTCATGAACG 58.266 33.333 0.00 0.00 32.00 3.95
152 153 6.427150 TGAAACTCTTTAAACTCATGAACGC 58.573 36.000 0.00 0.00 0.00 4.84
153 154 6.260050 TGAAACTCTTTAAACTCATGAACGCT 59.740 34.615 0.00 0.00 0.00 5.07
154 155 6.619801 AACTCTTTAAACTCATGAACGCTT 57.380 33.333 0.00 0.00 0.00 4.68
155 156 5.990408 ACTCTTTAAACTCATGAACGCTTG 58.010 37.500 0.00 0.00 0.00 4.01
156 157 5.527582 ACTCTTTAAACTCATGAACGCTTGT 59.472 36.000 0.00 0.00 0.00 3.16
157 158 6.038271 ACTCTTTAAACTCATGAACGCTTGTT 59.962 34.615 0.00 0.00 38.91 2.83
158 159 7.225931 ACTCTTTAAACTCATGAACGCTTGTTA 59.774 33.333 0.00 0.00 35.50 2.41
159 160 7.921787 TCTTTAAACTCATGAACGCTTGTTAA 58.078 30.769 0.00 0.00 35.50 2.01
160 161 8.564574 TCTTTAAACTCATGAACGCTTGTTAAT 58.435 29.630 0.00 0.00 35.50 1.40
161 162 9.820229 CTTTAAACTCATGAACGCTTGTTAATA 57.180 29.630 0.00 0.00 35.50 0.98
172 173 8.484799 TGAACGCTTGTTAATATATAAAGAGCG 58.515 33.333 19.77 19.77 44.80 5.03
173 174 7.941795 ACGCTTGTTAATATATAAAGAGCGT 57.058 32.000 20.64 20.64 46.74 5.07
175 176 7.784176 CGCTTGTTAATATATAAAGAGCGTGT 58.216 34.615 16.05 0.00 36.36 4.49
176 177 8.273557 CGCTTGTTAATATATAAAGAGCGTGTT 58.726 33.333 16.05 0.00 36.36 3.32
177 178 9.931210 GCTTGTTAATATATAAAGAGCGTGTTT 57.069 29.630 0.00 0.00 0.00 2.83
203 204 9.810545 TTTTTGGGTGACTTAGAAAATAAGTTG 57.189 29.630 2.10 0.00 37.83 3.16
204 205 6.569179 TGGGTGACTTAGAAAATAAGTTGC 57.431 37.500 2.10 0.00 37.83 4.17
205 206 5.475564 TGGGTGACTTAGAAAATAAGTTGCC 59.524 40.000 2.10 7.17 37.83 4.52
206 207 5.710567 GGGTGACTTAGAAAATAAGTTGCCT 59.289 40.000 15.02 0.00 37.83 4.75
207 208 6.127980 GGGTGACTTAGAAAATAAGTTGCCTC 60.128 42.308 15.02 7.33 37.83 4.70
208 209 6.655425 GGTGACTTAGAAAATAAGTTGCCTCT 59.345 38.462 2.10 0.00 37.83 3.69
209 210 7.148390 GGTGACTTAGAAAATAAGTTGCCTCTC 60.148 40.741 2.10 0.00 37.83 3.20
210 211 6.879458 TGACTTAGAAAATAAGTTGCCTCTCC 59.121 38.462 2.10 0.00 37.83 3.71
211 212 6.181190 ACTTAGAAAATAAGTTGCCTCTCCC 58.819 40.000 0.00 0.00 34.40 4.30
212 213 3.969553 AGAAAATAAGTTGCCTCTCCCC 58.030 45.455 0.00 0.00 0.00 4.81
213 214 3.333680 AGAAAATAAGTTGCCTCTCCCCA 59.666 43.478 0.00 0.00 0.00 4.96
214 215 3.825908 AAATAAGTTGCCTCTCCCCAA 57.174 42.857 0.00 0.00 0.00 4.12
215 216 2.808906 ATAAGTTGCCTCTCCCCAAC 57.191 50.000 0.00 0.00 41.13 3.77
216 217 4.339335 AGTTGCCTCTCCCCAACT 57.661 55.556 0.56 0.56 44.86 3.16
217 218 2.556849 AGTTGCCTCTCCCCAACTT 58.443 52.632 0.56 0.00 46.86 2.66
218 219 1.742308 AGTTGCCTCTCCCCAACTTA 58.258 50.000 0.56 0.00 46.86 2.24
219 220 2.062636 AGTTGCCTCTCCCCAACTTAA 58.937 47.619 0.56 0.00 46.86 1.85
220 221 2.445525 AGTTGCCTCTCCCCAACTTAAA 59.554 45.455 0.56 0.00 46.86 1.52
221 222 3.117284 AGTTGCCTCTCCCCAACTTAAAA 60.117 43.478 0.56 0.00 46.86 1.52
222 223 3.603965 TGCCTCTCCCCAACTTAAAAA 57.396 42.857 0.00 0.00 0.00 1.94
223 224 3.496331 TGCCTCTCCCCAACTTAAAAAG 58.504 45.455 0.00 0.00 0.00 2.27
224 225 2.826128 GCCTCTCCCCAACTTAAAAAGG 59.174 50.000 0.00 0.00 0.00 3.11
225 226 3.431415 CCTCTCCCCAACTTAAAAAGGG 58.569 50.000 0.00 0.00 41.12 3.95
226 227 3.181422 CCTCTCCCCAACTTAAAAAGGGT 60.181 47.826 0.00 0.00 39.76 4.34
227 228 4.079970 CTCTCCCCAACTTAAAAAGGGTC 58.920 47.826 0.00 0.00 39.76 4.46
228 229 3.464080 TCTCCCCAACTTAAAAAGGGTCA 59.536 43.478 0.00 0.00 39.76 4.02
229 230 4.107311 TCTCCCCAACTTAAAAAGGGTCAT 59.893 41.667 0.00 0.00 39.76 3.06
230 231 4.412843 TCCCCAACTTAAAAAGGGTCATC 58.587 43.478 0.00 0.00 39.76 2.92
231 232 4.107311 TCCCCAACTTAAAAAGGGTCATCT 59.893 41.667 0.00 0.00 39.76 2.90
232 233 4.838423 CCCCAACTTAAAAAGGGTCATCTT 59.162 41.667 0.00 0.00 39.76 2.40
233 234 5.306937 CCCCAACTTAAAAAGGGTCATCTTT 59.693 40.000 0.00 0.00 39.76 2.52
234 235 6.495526 CCCCAACTTAAAAAGGGTCATCTTTA 59.504 38.462 0.00 0.00 39.76 1.85
235 236 7.015779 CCCCAACTTAAAAAGGGTCATCTTTAA 59.984 37.037 0.00 0.00 39.76 1.52
236 237 8.425703 CCCAACTTAAAAAGGGTCATCTTTAAA 58.574 33.333 0.00 0.00 36.09 1.52
237 238 9.996554 CCAACTTAAAAAGGGTCATCTTTAAAT 57.003 29.630 0.00 0.00 36.09 1.40
284 285 9.053840 GTTATTCCATAACTAGTTTAGAAGGCC 57.946 37.037 14.49 0.00 41.40 5.19
285 286 5.625568 TCCATAACTAGTTTAGAAGGCCC 57.374 43.478 14.49 0.00 0.00 5.80
286 287 5.034200 TCCATAACTAGTTTAGAAGGCCCA 58.966 41.667 14.49 0.00 0.00 5.36
287 288 5.489637 TCCATAACTAGTTTAGAAGGCCCAA 59.510 40.000 14.49 0.00 0.00 4.12
288 289 6.159751 TCCATAACTAGTTTAGAAGGCCCAAT 59.840 38.462 14.49 0.00 0.00 3.16
289 290 7.348801 TCCATAACTAGTTTAGAAGGCCCAATA 59.651 37.037 14.49 0.00 0.00 1.90
290 291 7.996644 CCATAACTAGTTTAGAAGGCCCAATAA 59.003 37.037 14.49 0.00 0.00 1.40
291 292 9.403583 CATAACTAGTTTAGAAGGCCCAATAAA 57.596 33.333 14.49 0.00 0.00 1.40
302 303 7.162082 AGAAGGCCCAATAAATATAAGAGACG 58.838 38.462 0.00 0.00 0.00 4.18
303 304 5.805728 AGGCCCAATAAATATAAGAGACGG 58.194 41.667 0.00 0.00 0.00 4.79
304 305 4.395231 GGCCCAATAAATATAAGAGACGGC 59.605 45.833 0.00 0.00 0.00 5.68
305 306 5.246307 GCCCAATAAATATAAGAGACGGCT 58.754 41.667 0.00 0.00 0.00 5.52
306 307 5.705905 GCCCAATAAATATAAGAGACGGCTT 59.294 40.000 0.00 0.00 0.00 4.35
307 308 6.877322 GCCCAATAAATATAAGAGACGGCTTA 59.123 38.462 0.00 0.00 35.06 3.09
308 309 7.553044 GCCCAATAAATATAAGAGACGGCTTAT 59.447 37.037 0.00 2.36 42.21 1.73
309 310 8.883731 CCCAATAAATATAAGAGACGGCTTATG 58.116 37.037 14.06 2.21 40.35 1.90
310 311 8.883731 CCAATAAATATAAGAGACGGCTTATGG 58.116 37.037 14.06 6.15 40.35 2.74
311 312 9.653287 CAATAAATATAAGAGACGGCTTATGGA 57.347 33.333 14.06 1.05 40.35 3.41
314 315 8.974060 AAATATAAGAGACGGCTTATGGAAAA 57.026 30.769 14.06 0.00 40.35 2.29
315 316 8.608844 AATATAAGAGACGGCTTATGGAAAAG 57.391 34.615 14.06 0.00 40.35 2.27
322 323 2.143876 GCTTATGGAAAAGCTGGGGA 57.856 50.000 1.45 0.00 46.74 4.81
323 324 2.027385 GCTTATGGAAAAGCTGGGGAG 58.973 52.381 1.45 0.00 46.74 4.30
324 325 2.357154 GCTTATGGAAAAGCTGGGGAGA 60.357 50.000 1.45 0.00 46.74 3.71
325 326 3.549794 CTTATGGAAAAGCTGGGGAGAG 58.450 50.000 0.00 0.00 0.00 3.20
326 327 0.033699 ATGGAAAAGCTGGGGAGAGC 60.034 55.000 0.00 0.00 39.46 4.09
327 328 1.379176 GGAAAAGCTGGGGAGAGCC 60.379 63.158 0.00 0.00 40.08 4.70
328 329 1.746991 GAAAAGCTGGGGAGAGCCG 60.747 63.158 0.00 0.00 40.08 5.52
329 330 3.273788 AAAAGCTGGGGAGAGCCGG 62.274 63.158 0.00 0.00 40.08 6.13
333 334 2.764128 CTGGGGAGAGCCGGCTTA 60.764 66.667 33.34 11.94 33.83 3.09
334 335 2.040884 TGGGGAGAGCCGGCTTAT 60.041 61.111 33.34 23.06 33.83 1.73
335 336 1.692749 TGGGGAGAGCCGGCTTATT 60.693 57.895 33.34 19.66 33.83 1.40
336 337 1.279025 TGGGGAGAGCCGGCTTATTT 61.279 55.000 33.34 16.87 33.83 1.40
337 338 0.106669 GGGGAGAGCCGGCTTATTTT 60.107 55.000 33.34 14.13 33.83 1.82
338 339 1.685180 GGGGAGAGCCGGCTTATTTTT 60.685 52.381 33.34 12.20 33.83 1.94
357 358 5.585820 TTTTTAAGCCGTCCAAAAGAACT 57.414 34.783 0.00 0.00 0.00 3.01
358 359 4.561735 TTTAAGCCGTCCAAAAGAACTG 57.438 40.909 0.00 0.00 0.00 3.16
359 360 1.318576 AAGCCGTCCAAAAGAACTGG 58.681 50.000 0.00 0.00 35.05 4.00
360 361 1.172812 AGCCGTCCAAAAGAACTGGC 61.173 55.000 0.00 0.00 38.96 4.85
361 362 1.956802 CCGTCCAAAAGAACTGGCC 59.043 57.895 0.00 0.00 33.63 5.36
362 363 0.537371 CCGTCCAAAAGAACTGGCCT 60.537 55.000 3.32 0.00 33.63 5.19
363 364 1.271163 CCGTCCAAAAGAACTGGCCTA 60.271 52.381 3.32 0.00 33.63 3.93
364 365 2.500229 CGTCCAAAAGAACTGGCCTAA 58.500 47.619 3.32 0.00 33.63 2.69
365 366 2.484264 CGTCCAAAAGAACTGGCCTAAG 59.516 50.000 3.32 0.00 33.63 2.18
366 367 2.820197 GTCCAAAAGAACTGGCCTAAGG 59.180 50.000 3.32 0.00 33.63 2.69
367 368 2.445525 TCCAAAAGAACTGGCCTAAGGT 59.554 45.455 3.32 0.00 33.63 3.50
368 369 2.820197 CCAAAAGAACTGGCCTAAGGTC 59.180 50.000 3.32 1.21 33.81 3.85
369 370 2.474410 AAAGAACTGGCCTAAGGTCG 57.526 50.000 3.32 0.00 39.00 4.79
370 371 0.613777 AAGAACTGGCCTAAGGTCGG 59.386 55.000 3.32 0.00 39.00 4.79
372 373 2.460027 AACTGGCCTAAGGTCGGTT 58.540 52.632 3.32 0.00 45.63 4.44
373 374 3.386716 ACTGGCCTAAGGTCGGTTA 57.613 52.632 3.32 0.00 45.63 2.85
374 375 1.192428 ACTGGCCTAAGGTCGGTTAG 58.808 55.000 3.32 0.00 45.63 2.34
375 376 1.272872 ACTGGCCTAAGGTCGGTTAGA 60.273 52.381 3.32 0.00 45.63 2.10
376 377 2.040178 CTGGCCTAAGGTCGGTTAGAT 58.960 52.381 3.32 0.00 32.52 1.98
377 378 2.434702 CTGGCCTAAGGTCGGTTAGATT 59.565 50.000 3.32 0.00 32.52 2.40
378 379 2.169769 TGGCCTAAGGTCGGTTAGATTG 59.830 50.000 3.32 0.00 32.52 2.67
379 380 2.433239 GGCCTAAGGTCGGTTAGATTGA 59.567 50.000 0.00 0.00 32.52 2.57
380 381 3.118519 GGCCTAAGGTCGGTTAGATTGAA 60.119 47.826 0.00 0.00 32.52 2.69
381 382 4.444449 GGCCTAAGGTCGGTTAGATTGAAT 60.444 45.833 0.00 0.00 32.52 2.57
382 383 5.221581 GGCCTAAGGTCGGTTAGATTGAATA 60.222 44.000 0.00 0.00 32.52 1.75
383 384 5.927115 GCCTAAGGTCGGTTAGATTGAATAG 59.073 44.000 2.74 0.00 32.52 1.73
384 385 6.239232 GCCTAAGGTCGGTTAGATTGAATAGA 60.239 42.308 2.74 0.00 32.52 1.98
385 386 7.525692 GCCTAAGGTCGGTTAGATTGAATAGAT 60.526 40.741 2.74 0.00 32.52 1.98
386 387 7.815068 CCTAAGGTCGGTTAGATTGAATAGATG 59.185 40.741 2.74 0.00 32.52 2.90
387 388 6.102897 AGGTCGGTTAGATTGAATAGATGG 57.897 41.667 0.00 0.00 0.00 3.51
388 389 5.602978 AGGTCGGTTAGATTGAATAGATGGT 59.397 40.000 0.00 0.00 0.00 3.55
389 390 5.927115 GGTCGGTTAGATTGAATAGATGGTC 59.073 44.000 0.00 0.00 0.00 4.02
390 391 6.239345 GGTCGGTTAGATTGAATAGATGGTCT 60.239 42.308 0.00 0.00 0.00 3.85
391 392 6.642950 GTCGGTTAGATTGAATAGATGGTCTG 59.357 42.308 0.00 0.00 0.00 3.51
392 393 6.549736 TCGGTTAGATTGAATAGATGGTCTGA 59.450 38.462 0.00 0.00 0.00 3.27
393 394 7.069455 TCGGTTAGATTGAATAGATGGTCTGAA 59.931 37.037 0.00 0.00 0.00 3.02
394 395 7.383572 CGGTTAGATTGAATAGATGGTCTGAAG 59.616 40.741 0.00 0.00 0.00 3.02
395 396 8.207545 GGTTAGATTGAATAGATGGTCTGAAGT 58.792 37.037 0.00 0.00 0.00 3.01
398 399 8.546083 AGATTGAATAGATGGTCTGAAGTACT 57.454 34.615 0.00 0.00 0.00 2.73
399 400 9.647918 AGATTGAATAGATGGTCTGAAGTACTA 57.352 33.333 0.00 0.00 0.00 1.82
400 401 9.685828 GATTGAATAGATGGTCTGAAGTACTAC 57.314 37.037 0.00 0.00 0.00 2.73
401 402 7.260558 TGAATAGATGGTCTGAAGTACTACG 57.739 40.000 0.00 0.00 0.00 3.51
402 403 7.052248 TGAATAGATGGTCTGAAGTACTACGA 58.948 38.462 0.00 0.00 0.00 3.43
403 404 7.555195 TGAATAGATGGTCTGAAGTACTACGAA 59.445 37.037 0.00 0.00 0.00 3.85
404 405 7.876936 ATAGATGGTCTGAAGTACTACGAAA 57.123 36.000 0.00 0.00 0.00 3.46
405 406 6.777213 AGATGGTCTGAAGTACTACGAAAT 57.223 37.500 0.00 0.00 0.00 2.17
406 407 7.876936 AGATGGTCTGAAGTACTACGAAATA 57.123 36.000 0.00 0.00 0.00 1.40
407 408 8.466617 AGATGGTCTGAAGTACTACGAAATAT 57.533 34.615 0.00 0.00 0.00 1.28
408 409 8.915036 AGATGGTCTGAAGTACTACGAAATATT 58.085 33.333 0.00 0.00 0.00 1.28
409 410 8.873215 ATGGTCTGAAGTACTACGAAATATTG 57.127 34.615 0.00 0.00 0.00 1.90
410 411 7.833786 TGGTCTGAAGTACTACGAAATATTGT 58.166 34.615 0.00 0.00 0.00 2.71
411 412 7.972277 TGGTCTGAAGTACTACGAAATATTGTC 59.028 37.037 0.00 0.00 0.00 3.18
412 413 7.972277 GGTCTGAAGTACTACGAAATATTGTCA 59.028 37.037 0.00 0.00 0.00 3.58
413 414 8.796278 GTCTGAAGTACTACGAAATATTGTCAC 58.204 37.037 0.00 0.00 0.00 3.67
414 415 8.517056 TCTGAAGTACTACGAAATATTGTCACA 58.483 33.333 0.00 0.00 0.00 3.58
415 416 8.456904 TGAAGTACTACGAAATATTGTCACAC 57.543 34.615 0.00 0.00 0.00 3.82
416 417 7.271868 TGAAGTACTACGAAATATTGTCACACG 59.728 37.037 0.00 0.00 0.00 4.49
417 418 6.845302 AGTACTACGAAATATTGTCACACGA 58.155 36.000 0.00 0.00 0.00 4.35
418 419 7.478322 AGTACTACGAAATATTGTCACACGAT 58.522 34.615 0.00 0.00 0.00 3.73
419 420 6.569228 ACTACGAAATATTGTCACACGATG 57.431 37.500 0.00 0.00 0.00 3.84
420 421 6.097356 ACTACGAAATATTGTCACACGATGT 58.903 36.000 0.00 0.00 0.00 3.06
421 422 7.252708 ACTACGAAATATTGTCACACGATGTA 58.747 34.615 0.00 0.00 0.00 2.29
422 423 6.954616 ACGAAATATTGTCACACGATGTAA 57.045 33.333 0.00 0.00 0.00 2.41
423 424 7.354025 ACGAAATATTGTCACACGATGTAAA 57.646 32.000 0.00 0.00 0.00 2.01
424 425 7.798801 ACGAAATATTGTCACACGATGTAAAA 58.201 30.769 0.00 0.00 0.00 1.52
425 426 7.742963 ACGAAATATTGTCACACGATGTAAAAC 59.257 33.333 0.00 0.00 0.00 2.43
426 427 7.955324 CGAAATATTGTCACACGATGTAAAACT 59.045 33.333 0.00 0.00 0.00 2.66
427 428 8.948853 AAATATTGTCACACGATGTAAAACTG 57.051 30.769 0.00 0.00 0.00 3.16
428 429 7.667043 ATATTGTCACACGATGTAAAACTGT 57.333 32.000 0.00 0.00 0.00 3.55
429 430 4.787381 TGTCACACGATGTAAAACTGTG 57.213 40.909 0.00 0.00 34.71 3.66
430 431 4.185394 TGTCACACGATGTAAAACTGTGT 58.815 39.130 0.00 0.00 44.02 3.72
434 435 4.904116 ACACGATGTAAAACTGTGTGTTG 58.096 39.130 0.00 0.00 41.81 3.33
435 436 4.393680 ACACGATGTAAAACTGTGTGTTGT 59.606 37.500 0.00 0.00 41.81 3.32
436 437 4.728131 CACGATGTAAAACTGTGTGTTGTG 59.272 41.667 0.00 0.00 39.13 3.33
437 438 4.393680 ACGATGTAAAACTGTGTGTTGTGT 59.606 37.500 0.00 0.00 39.13 3.72
438 439 5.106475 ACGATGTAAAACTGTGTGTTGTGTT 60.106 36.000 0.00 0.00 39.13 3.32
439 440 5.226978 CGATGTAAAACTGTGTGTTGTGTTG 59.773 40.000 0.00 0.00 39.13 3.33
440 441 5.440234 TGTAAAACTGTGTGTTGTGTTGT 57.560 34.783 0.00 0.00 39.13 3.32
441 442 6.555812 TGTAAAACTGTGTGTTGTGTTGTA 57.444 33.333 0.00 0.00 39.13 2.41
442 443 6.372185 TGTAAAACTGTGTGTTGTGTTGTAC 58.628 36.000 0.00 0.00 39.13 2.90
443 444 5.699097 AAAACTGTGTGTTGTGTTGTACT 57.301 34.783 0.00 0.00 39.13 2.73
444 445 6.804770 AAAACTGTGTGTTGTGTTGTACTA 57.195 33.333 0.00 0.00 39.13 1.82
445 446 6.804770 AAACTGTGTGTTGTGTTGTACTAA 57.195 33.333 0.00 0.00 39.13 2.24
446 447 5.789710 ACTGTGTGTTGTGTTGTACTAAC 57.210 39.130 0.00 0.00 0.00 2.34
447 448 4.327898 ACTGTGTGTTGTGTTGTACTAACG 59.672 41.667 0.00 0.00 0.00 3.18
448 449 4.492611 TGTGTGTTGTGTTGTACTAACGA 58.507 39.130 0.00 0.00 0.00 3.85
449 450 4.563580 TGTGTGTTGTGTTGTACTAACGAG 59.436 41.667 0.00 0.00 0.00 4.18
450 451 4.563976 GTGTGTTGTGTTGTACTAACGAGT 59.436 41.667 0.00 0.00 39.92 4.18
451 452 5.062558 GTGTGTTGTGTTGTACTAACGAGTT 59.937 40.000 0.00 0.00 37.10 3.01
452 453 5.638657 TGTGTTGTGTTGTACTAACGAGTTT 59.361 36.000 0.00 0.00 37.10 2.66
453 454 6.810676 TGTGTTGTGTTGTACTAACGAGTTTA 59.189 34.615 0.00 0.00 37.10 2.01
454 455 7.330454 TGTGTTGTGTTGTACTAACGAGTTTAA 59.670 33.333 0.00 0.00 37.10 1.52
455 456 8.330302 GTGTTGTGTTGTACTAACGAGTTTAAT 58.670 33.333 0.00 0.00 37.10 1.40
456 457 8.329583 TGTTGTGTTGTACTAACGAGTTTAATG 58.670 33.333 0.00 0.00 37.10 1.90
457 458 8.542132 GTTGTGTTGTACTAACGAGTTTAATGA 58.458 33.333 0.00 0.00 37.10 2.57
458 459 8.289440 TGTGTTGTACTAACGAGTTTAATGAG 57.711 34.615 0.00 0.00 37.10 2.90
459 460 7.922278 TGTGTTGTACTAACGAGTTTAATGAGT 59.078 33.333 0.00 0.00 37.10 3.41
460 461 8.758715 GTGTTGTACTAACGAGTTTAATGAGTT 58.241 33.333 0.00 0.00 37.10 3.01
461 462 8.757789 TGTTGTACTAACGAGTTTAATGAGTTG 58.242 33.333 0.00 0.00 37.10 3.16
462 463 7.342318 TGTACTAACGAGTTTAATGAGTTGC 57.658 36.000 0.00 0.00 37.10 4.17
463 464 7.149973 TGTACTAACGAGTTTAATGAGTTGCT 58.850 34.615 0.00 0.00 37.10 3.91
464 465 7.654520 TGTACTAACGAGTTTAATGAGTTGCTT 59.345 33.333 0.00 0.00 37.10 3.91
465 466 6.888430 ACTAACGAGTTTAATGAGTTGCTTG 58.112 36.000 0.00 0.00 28.61 4.01
466 467 5.751243 AACGAGTTTAATGAGTTGCTTGT 57.249 34.783 0.00 0.00 0.00 3.16
467 468 5.344207 ACGAGTTTAATGAGTTGCTTGTC 57.656 39.130 0.00 0.00 0.00 3.18
468 469 4.814234 ACGAGTTTAATGAGTTGCTTGTCA 59.186 37.500 0.00 0.00 0.00 3.58
469 470 5.295787 ACGAGTTTAATGAGTTGCTTGTCAA 59.704 36.000 0.00 0.00 0.00 3.18
470 471 6.183360 ACGAGTTTAATGAGTTGCTTGTCAAA 60.183 34.615 0.00 0.00 36.26 2.69
471 472 6.140737 CGAGTTTAATGAGTTGCTTGTCAAAC 59.859 38.462 0.00 0.00 36.26 2.93
472 473 7.100458 AGTTTAATGAGTTGCTTGTCAAACT 57.900 32.000 0.00 0.00 36.26 2.66
473 474 7.196331 AGTTTAATGAGTTGCTTGTCAAACTC 58.804 34.615 8.40 8.40 36.26 3.01
474 475 3.885484 ATGAGTTGCTTGTCAAACTCG 57.115 42.857 10.05 0.00 36.50 4.18
475 476 2.627945 TGAGTTGCTTGTCAAACTCGT 58.372 42.857 10.05 0.00 36.50 4.18
476 477 3.006940 TGAGTTGCTTGTCAAACTCGTT 58.993 40.909 10.05 0.00 36.50 3.85
477 478 4.185394 TGAGTTGCTTGTCAAACTCGTTA 58.815 39.130 10.05 0.00 36.50 3.18
478 479 4.270084 TGAGTTGCTTGTCAAACTCGTTAG 59.730 41.667 10.05 0.00 36.50 2.34
479 480 3.002348 AGTTGCTTGTCAAACTCGTTAGC 59.998 43.478 0.00 0.00 36.26 3.09
480 481 2.833794 TGCTTGTCAAACTCGTTAGCT 58.166 42.857 0.00 0.00 0.00 3.32
481 482 3.202906 TGCTTGTCAAACTCGTTAGCTT 58.797 40.909 0.00 0.00 0.00 3.74
482 483 3.002246 TGCTTGTCAAACTCGTTAGCTTG 59.998 43.478 0.00 0.00 31.32 4.01
483 484 3.247648 GCTTGTCAAACTCGTTAGCTTGA 59.752 43.478 0.00 0.00 35.86 3.02
484 485 4.609336 GCTTGTCAAACTCGTTAGCTTGAG 60.609 45.833 0.00 0.00 38.24 3.02
485 486 3.390135 TGTCAAACTCGTTAGCTTGAGG 58.610 45.455 12.99 0.42 38.24 3.86
486 487 3.181469 TGTCAAACTCGTTAGCTTGAGGT 60.181 43.478 12.99 5.40 38.24 3.85
487 488 3.429207 GTCAAACTCGTTAGCTTGAGGTC 59.571 47.826 12.99 0.00 38.24 3.85
488 489 2.349297 AACTCGTTAGCTTGAGGTCG 57.651 50.000 12.99 1.79 36.53 4.79
489 490 1.531423 ACTCGTTAGCTTGAGGTCGA 58.469 50.000 12.99 5.31 36.53 4.20
490 491 1.469308 ACTCGTTAGCTTGAGGTCGAG 59.531 52.381 15.37 15.37 46.31 4.04
502 503 5.801350 TTGAGGTCGAGCTGAAATTTATG 57.199 39.130 23.97 0.00 0.00 1.90
503 504 5.084818 TGAGGTCGAGCTGAAATTTATGA 57.915 39.130 23.97 0.00 0.00 2.15
504 505 5.674525 TGAGGTCGAGCTGAAATTTATGAT 58.325 37.500 23.97 0.00 0.00 2.45
505 506 6.115446 TGAGGTCGAGCTGAAATTTATGATT 58.885 36.000 23.97 0.00 0.00 2.57
506 507 6.037500 TGAGGTCGAGCTGAAATTTATGATTG 59.962 38.462 23.97 0.00 0.00 2.67
507 508 6.115446 AGGTCGAGCTGAAATTTATGATTGA 58.885 36.000 17.85 0.00 0.00 2.57
508 509 6.769822 AGGTCGAGCTGAAATTTATGATTGAT 59.230 34.615 17.85 0.00 0.00 2.57
509 510 7.284034 AGGTCGAGCTGAAATTTATGATTGATT 59.716 33.333 17.85 0.00 0.00 2.57
510 511 7.589221 GGTCGAGCTGAAATTTATGATTGATTC 59.411 37.037 7.51 0.00 0.00 2.52
511 512 8.341173 GTCGAGCTGAAATTTATGATTGATTCT 58.659 33.333 0.00 0.00 0.00 2.40
512 513 8.340443 TCGAGCTGAAATTTATGATTGATTCTG 58.660 33.333 0.00 0.00 0.00 3.02
513 514 8.127327 CGAGCTGAAATTTATGATTGATTCTGT 58.873 33.333 0.00 0.00 0.00 3.41
514 515 9.798994 GAGCTGAAATTTATGATTGATTCTGTT 57.201 29.630 0.00 0.00 0.00 3.16
515 516 9.798994 AGCTGAAATTTATGATTGATTCTGTTC 57.201 29.630 0.00 0.00 0.00 3.18
516 517 9.577110 GCTGAAATTTATGATTGATTCTGTTCA 57.423 29.630 0.00 0.00 0.00 3.18
536 537 4.673441 TCATTAAGAACTGAGCTACGAGC 58.327 43.478 0.00 0.00 42.84 5.03
548 549 2.942710 GCTACGAGCTTAATATGCCGA 58.057 47.619 12.92 1.49 38.45 5.54
549 550 2.917971 GCTACGAGCTTAATATGCCGAG 59.082 50.000 12.92 8.64 38.45 4.63
550 551 1.784525 ACGAGCTTAATATGCCGAGC 58.215 50.000 12.92 0.00 35.42 5.03
554 555 1.202687 AGCTTAATATGCCGAGCTGCA 60.203 47.619 1.02 0.65 43.37 4.41
566 567 3.428045 GCCGAGCTGCACTCATTAAATTT 60.428 43.478 14.09 0.00 46.63 1.82
567 568 4.737054 CCGAGCTGCACTCATTAAATTTT 58.263 39.130 14.09 0.00 46.63 1.82
568 569 4.560035 CCGAGCTGCACTCATTAAATTTTG 59.440 41.667 14.09 0.00 46.63 2.44
569 570 4.030977 CGAGCTGCACTCATTAAATTTTGC 59.969 41.667 14.09 0.00 46.63 3.68
570 571 3.922240 AGCTGCACTCATTAAATTTTGCG 59.078 39.130 1.02 0.00 32.49 4.85
599 600 5.408880 GAGCTTTTGGTCTAGTCCTACTT 57.591 43.478 7.56 0.00 43.12 2.24
601 602 4.223255 AGCTTTTGGTCTAGTCCTACTTCC 59.777 45.833 7.56 0.00 0.00 3.46
605 606 4.399483 TGGTCTAGTCCTACTTCCAAGT 57.601 45.455 7.56 0.00 42.91 3.16
613 614 1.065854 CCTACTTCCAAGTGCAGGGAG 60.066 57.143 2.01 0.00 40.07 4.30
621 622 1.063183 AAGTGCAGGGAGAGAAGCTT 58.937 50.000 0.00 0.00 0.00 3.74
634 635 1.543802 AGAAGCTTCTCGTCCTGACAG 59.456 52.381 23.49 0.00 29.94 3.51
637 638 1.581954 CTTCTCGTCCTGACAGCGT 59.418 57.895 0.00 0.00 0.00 5.07
639 640 1.452953 TTCTCGTCCTGACAGCGTGT 61.453 55.000 0.00 0.00 0.00 4.49
665 672 6.573725 GCTGTTATAAAAAGTGACTGAACGTG 59.426 38.462 0.00 0.00 0.00 4.49
666 673 7.517734 GCTGTTATAAAAAGTGACTGAACGTGA 60.518 37.037 0.00 0.00 0.00 4.35
670 677 9.710979 TTATAAAAAGTGACTGAACGTGAAAAG 57.289 29.630 0.00 0.00 0.00 2.27
674 681 5.470845 AGTGACTGAACGTGAAAAGAAAG 57.529 39.130 0.00 0.00 0.00 2.62
675 682 4.935808 AGTGACTGAACGTGAAAAGAAAGT 59.064 37.500 0.00 0.00 0.00 2.66
676 683 5.063564 AGTGACTGAACGTGAAAAGAAAGTC 59.936 40.000 0.00 0.00 34.70 3.01
677 684 4.932799 TGACTGAACGTGAAAAGAAAGTCA 59.067 37.500 0.00 0.00 40.19 3.41
678 685 5.584649 TGACTGAACGTGAAAAGAAAGTCAT 59.415 36.000 0.00 0.00 38.23 3.06
680 687 4.597079 TGAACGTGAAAAGAAAGTCATGC 58.403 39.130 0.00 0.00 34.69 4.06
681 688 4.095632 TGAACGTGAAAAGAAAGTCATGCA 59.904 37.500 0.00 0.00 34.69 3.96
687 697 3.655276 AAAGAAAGTCATGCAAGCCTG 57.345 42.857 0.00 0.00 0.00 4.85
711 721 5.516339 GTCCCATTTTTCTTATTCACATGCG 59.484 40.000 0.00 0.00 0.00 4.73
714 724 6.368516 CCCATTTTTCTTATTCACATGCGTTT 59.631 34.615 0.00 0.00 0.00 3.60
718 728 7.621832 TTTTCTTATTCACATGCGTTTTGAG 57.378 32.000 0.00 0.00 0.00 3.02
732 742 4.494199 GCGTTTTGAGGATCCTGTAAATCG 60.494 45.833 27.50 27.50 31.98 3.34
735 745 6.455646 CGTTTTGAGGATCCTGTAAATCGAAG 60.456 42.308 27.67 13.19 31.28 3.79
770 780 5.929058 TCTTTGCTAGATCAGACAGATGT 57.071 39.130 0.00 0.00 37.00 3.06
782 792 2.820197 AGACAGATGTAAGCACACGAGA 59.180 45.455 0.00 0.00 37.54 4.04
820 831 9.727627 GAATTTGAATACTCAGAAATAGGCAAG 57.272 33.333 0.00 0.00 31.69 4.01
832 843 1.491668 TAGGCAAGAGCAACCGGATA 58.508 50.000 9.46 0.00 44.61 2.59
833 844 0.839946 AGGCAAGAGCAACCGGATAT 59.160 50.000 9.46 0.00 44.61 1.63
835 846 1.334869 GGCAAGAGCAACCGGATATTG 59.665 52.381 9.46 3.09 44.61 1.90
844 855 4.637483 CAACCGGATATTGCATCAAAGT 57.363 40.909 9.46 0.00 0.00 2.66
846 857 4.637483 ACCGGATATTGCATCAAAGTTG 57.363 40.909 9.46 0.00 0.00 3.16
847 858 3.181487 ACCGGATATTGCATCAAAGTTGC 60.181 43.478 9.46 0.00 40.55 4.17
855 866 2.293122 TGCATCAAAGTTGCACTGTACC 59.707 45.455 0.00 0.00 44.73 3.34
856 867 2.665519 GCATCAAAGTTGCACTGTACCG 60.666 50.000 0.00 0.00 39.90 4.02
969 989 5.500234 CCATCTCTTCCACTCATAAACCAA 58.500 41.667 0.00 0.00 0.00 3.67
979 999 2.687935 CTCATAAACCAACCATTCCCGG 59.312 50.000 0.00 0.00 0.00 5.73
992 1013 5.269189 ACCATTCCCGGACTAAATTCAATT 58.731 37.500 0.73 0.00 0.00 2.32
1052 1073 0.179056 CCATGGCCAGTAACCCTACG 60.179 60.000 13.05 0.00 32.87 3.51
1087 1108 2.255252 CCGCGGTTTGCTGAAAGG 59.745 61.111 19.50 0.00 43.27 3.11
1098 1119 1.511305 CTGAAAGGTCTCGGCGCTA 59.489 57.895 7.64 0.00 0.00 4.26
1173 1194 1.016130 CGCTTCATCGGTCTTGCTGT 61.016 55.000 0.00 0.00 0.00 4.40
1175 1196 1.363744 CTTCATCGGTCTTGCTGTCC 58.636 55.000 0.00 0.00 0.00 4.02
1195 1216 2.037136 CCCTCGCCTTGCTTGTCTG 61.037 63.158 0.00 0.00 0.00 3.51
1218 1239 3.578272 CCGCTCTCTCGAGGGTCG 61.578 72.222 13.10 16.23 45.79 4.79
1226 1247 0.604780 TCTCGAGGGTCGTCGTCTTT 60.605 55.000 13.56 0.00 41.35 2.52
1280 1301 2.962253 GCGGCGATGTACCTGCTC 60.962 66.667 12.98 0.00 0.00 4.26
1337 1358 3.311110 GTCGTGCTCCTGTGGGGA 61.311 66.667 0.00 0.00 42.77 4.81
1427 1448 0.818040 ACGTCCAAGTGGGCTGTTTC 60.818 55.000 0.00 0.00 37.76 2.78
1438 1459 2.639286 CTGTTTCCTGCACCGCAC 59.361 61.111 0.00 0.00 33.79 5.34
1440 1461 3.276846 GTTTCCTGCACCGCACGT 61.277 61.111 0.00 0.00 33.79 4.49
1472 1502 1.599797 CGGCGGGTGGAAGAAACTT 60.600 57.895 0.00 0.00 0.00 2.66
1479 1509 0.234884 GTGGAAGAAACTTGGCGTCG 59.765 55.000 0.00 0.00 0.00 5.12
1619 1649 4.143333 TGGGAGCGCTACTTCGGC 62.143 66.667 21.30 2.21 0.00 5.54
1653 1683 1.071567 GAACTACGTGACCGCTGAGC 61.072 60.000 0.00 0.00 37.70 4.26
1700 1730 4.700596 GCAGCTAGCGTAAGTAATTCTG 57.299 45.455 9.55 0.00 41.68 3.02
1702 1732 3.180584 CAGCTAGCGTAAGTAATTCTGCG 59.819 47.826 9.55 0.00 41.68 5.18
1703 1733 3.114065 GCTAGCGTAAGTAATTCTGCGT 58.886 45.455 0.00 0.00 41.68 5.24
1704 1734 3.179992 GCTAGCGTAAGTAATTCTGCGTC 59.820 47.826 0.00 0.00 41.68 5.19
1705 1735 3.226346 AGCGTAAGTAATTCTGCGTCA 57.774 42.857 0.00 0.00 41.68 4.35
1706 1736 3.782046 AGCGTAAGTAATTCTGCGTCAT 58.218 40.909 0.00 0.00 41.68 3.06
1708 1738 3.302480 GCGTAAGTAATTCTGCGTCATGG 60.302 47.826 0.00 0.00 41.68 3.66
1709 1739 3.245284 CGTAAGTAATTCTGCGTCATGGG 59.755 47.826 0.00 0.00 0.00 4.00
1710 1740 1.668419 AGTAATTCTGCGTCATGGGC 58.332 50.000 0.00 0.00 0.00 5.36
1777 1815 1.062258 GCATGTTGCCAAATGTGACG 58.938 50.000 0.00 0.00 37.42 4.35
1815 1857 4.675408 GCAAGCTAGTTTATTTGGCTCCAC 60.675 45.833 0.00 0.00 32.46 4.02
1883 1925 5.414454 AGCCATTTCGTTGCTACTTTTATCA 59.586 36.000 0.00 0.00 32.56 2.15
1902 1944 4.808414 TCAAATCCTCTCGTCAATCACT 57.192 40.909 0.00 0.00 0.00 3.41
1905 1947 6.697395 TCAAATCCTCTCGTCAATCACTAAA 58.303 36.000 0.00 0.00 0.00 1.85
2003 2053 1.243342 CGCCTGTCAAATTCCTGCCA 61.243 55.000 0.00 0.00 0.00 4.92
2039 2089 1.399440 CTGAACATGATCCAACCGCAG 59.601 52.381 0.00 0.00 0.00 5.18
2042 2092 1.453155 ACATGATCCAACCGCAGAAC 58.547 50.000 0.00 0.00 0.00 3.01
2055 2105 0.109597 GCAGAACAATCTTGGGTGCG 60.110 55.000 0.00 0.00 32.03 5.34
2184 2234 4.939052 AACGGGTCTGATAGGAACATAG 57.061 45.455 0.00 0.00 0.00 2.23
2214 2274 1.728971 CGCTCACTTGCCAGAAGTTAG 59.271 52.381 0.00 0.00 0.00 2.34
2263 2323 7.542824 TCGATCATAACATAACAAACTTCACGA 59.457 33.333 0.00 0.00 0.00 4.35
2311 2371 9.314321 TGAACGAGAATATTCTTCCTGAATAAC 57.686 33.333 18.88 1.95 46.81 1.89
2312 2372 9.314321 GAACGAGAATATTCTTCCTGAATAACA 57.686 33.333 18.88 0.00 46.81 2.41
2313 2373 9.667107 AACGAGAATATTCTTCCTGAATAACAA 57.333 29.630 18.88 0.00 46.81 2.83
2314 2374 9.667107 ACGAGAATATTCTTCCTGAATAACAAA 57.333 29.630 18.88 0.00 46.81 2.83
2561 2624 4.181309 TGATAAATTTCGGCCAAACACC 57.819 40.909 2.24 0.00 0.00 4.16
2606 2669 3.543460 GGAGTTCGCGGATTTTCATTACG 60.543 47.826 6.13 0.00 0.00 3.18
2722 2785 2.286425 CCCCTGATGGACCCCTGT 60.286 66.667 0.00 0.00 35.39 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.952102 CTGCCGGAATGCATTGCCTT 61.952 55.000 23.25 2.05 41.16 4.35
1 2 2.362760 TGCCGGAATGCATTGCCT 60.363 55.556 23.25 0.00 36.04 4.75
2 3 2.105528 CTGCCGGAATGCATTGCC 59.894 61.111 23.25 18.33 41.16 4.52
3 4 0.455410 TAACTGCCGGAATGCATTGC 59.545 50.000 18.59 19.39 41.16 3.56
4 5 2.937469 TTAACTGCCGGAATGCATTG 57.063 45.000 18.59 3.53 41.16 2.82
5 6 3.951775 TTTTAACTGCCGGAATGCATT 57.048 38.095 12.83 12.83 41.16 3.56
6 7 3.951775 TTTTTAACTGCCGGAATGCAT 57.048 38.095 5.05 0.00 41.16 3.96
24 25 7.224557 GTGTTCTACTTTGCCATGTTCATTTTT 59.775 33.333 0.00 0.00 0.00 1.94
25 26 6.701400 GTGTTCTACTTTGCCATGTTCATTTT 59.299 34.615 0.00 0.00 0.00 1.82
26 27 6.040842 AGTGTTCTACTTTGCCATGTTCATTT 59.959 34.615 0.00 0.00 35.67 2.32
27 28 5.536161 AGTGTTCTACTTTGCCATGTTCATT 59.464 36.000 0.00 0.00 35.67 2.57
28 29 5.072741 AGTGTTCTACTTTGCCATGTTCAT 58.927 37.500 0.00 0.00 35.67 2.57
29 30 4.460263 AGTGTTCTACTTTGCCATGTTCA 58.540 39.130 0.00 0.00 35.67 3.18
30 31 5.106673 GGTAGTGTTCTACTTTGCCATGTTC 60.107 44.000 5.57 0.00 44.13 3.18
31 32 4.760204 GGTAGTGTTCTACTTTGCCATGTT 59.240 41.667 5.57 0.00 44.13 2.71
32 33 4.202419 TGGTAGTGTTCTACTTTGCCATGT 60.202 41.667 5.57 0.00 44.13 3.21
33 34 4.323417 TGGTAGTGTTCTACTTTGCCATG 58.677 43.478 5.57 0.00 44.13 3.66
34 35 4.634012 TGGTAGTGTTCTACTTTGCCAT 57.366 40.909 5.57 0.00 44.13 4.40
35 36 4.634012 ATGGTAGTGTTCTACTTTGCCA 57.366 40.909 5.57 0.00 44.13 4.92
36 37 5.116882 CCTATGGTAGTGTTCTACTTTGCC 58.883 45.833 5.57 0.00 44.13 4.52
37 38 4.571176 GCCTATGGTAGTGTTCTACTTTGC 59.429 45.833 5.57 0.00 44.13 3.68
38 39 5.978814 AGCCTATGGTAGTGTTCTACTTTG 58.021 41.667 5.57 0.00 44.13 2.77
39 40 6.666546 TGTAGCCTATGGTAGTGTTCTACTTT 59.333 38.462 5.57 0.00 44.13 2.66
40 41 6.192773 TGTAGCCTATGGTAGTGTTCTACTT 58.807 40.000 5.57 0.00 44.13 2.24
41 42 5.763355 TGTAGCCTATGGTAGTGTTCTACT 58.237 41.667 5.57 0.00 44.13 2.57
42 43 6.448006 CATGTAGCCTATGGTAGTGTTCTAC 58.552 44.000 0.00 0.00 44.00 2.59
43 44 5.010719 GCATGTAGCCTATGGTAGTGTTCTA 59.989 44.000 0.00 0.00 37.23 2.10
44 45 4.202264 GCATGTAGCCTATGGTAGTGTTCT 60.202 45.833 0.00 0.00 37.23 3.01
45 46 4.058817 GCATGTAGCCTATGGTAGTGTTC 58.941 47.826 0.00 0.00 37.23 3.18
46 47 4.073293 GCATGTAGCCTATGGTAGTGTT 57.927 45.455 0.00 0.00 37.23 3.32
47 48 3.753294 GCATGTAGCCTATGGTAGTGT 57.247 47.619 0.00 0.00 37.23 3.55
59 60 0.179073 ATCGTGTGGAGGCATGTAGC 60.179 55.000 0.00 0.00 44.65 3.58
60 61 1.858091 GATCGTGTGGAGGCATGTAG 58.142 55.000 0.00 0.00 0.00 2.74
61 62 0.102300 CGATCGTGTGGAGGCATGTA 59.898 55.000 7.03 0.00 0.00 2.29
62 63 1.153568 CGATCGTGTGGAGGCATGT 60.154 57.895 7.03 0.00 0.00 3.21
63 64 2.528743 GCGATCGTGTGGAGGCATG 61.529 63.158 17.81 0.00 0.00 4.06
64 65 2.202932 GCGATCGTGTGGAGGCAT 60.203 61.111 17.81 0.00 0.00 4.40
65 66 3.017771 ATGCGATCGTGTGGAGGCA 62.018 57.895 17.81 3.41 40.79 4.75
66 67 2.202932 ATGCGATCGTGTGGAGGC 60.203 61.111 17.81 0.00 0.00 4.70
67 68 2.528743 GCATGCGATCGTGTGGAGG 61.529 63.158 17.81 1.19 0.00 4.30
68 69 1.810853 TGCATGCGATCGTGTGGAG 60.811 57.895 17.81 2.63 0.00 3.86
69 70 2.100031 GTGCATGCGATCGTGTGGA 61.100 57.895 17.81 13.79 0.00 4.02
70 71 2.400798 GTGCATGCGATCGTGTGG 59.599 61.111 17.81 5.47 0.00 4.17
71 72 2.020423 CGTGCATGCGATCGTGTG 59.980 61.111 17.81 16.02 0.00 3.82
72 73 3.188100 CCGTGCATGCGATCGTGT 61.188 61.111 17.81 2.53 0.00 4.49
73 74 3.928769 CCCGTGCATGCGATCGTG 61.929 66.667 17.81 9.21 0.00 4.35
74 75 4.451150 ACCCGTGCATGCGATCGT 62.451 61.111 17.81 10.58 0.00 3.73
75 76 3.928769 CACCCGTGCATGCGATCG 61.929 66.667 14.09 11.69 0.00 3.69
85 86 1.134788 CCCTACTCTAAAGCACCCGTG 60.135 57.143 0.00 0.00 0.00 4.94
86 87 1.192428 CCCTACTCTAAAGCACCCGT 58.808 55.000 0.00 0.00 0.00 5.28
87 88 0.464452 CCCCTACTCTAAAGCACCCG 59.536 60.000 0.00 0.00 0.00 5.28
88 89 1.209747 CACCCCTACTCTAAAGCACCC 59.790 57.143 0.00 0.00 0.00 4.61
89 90 1.209747 CCACCCCTACTCTAAAGCACC 59.790 57.143 0.00 0.00 0.00 5.01
90 91 1.209747 CCCACCCCTACTCTAAAGCAC 59.790 57.143 0.00 0.00 0.00 4.40
91 92 1.203389 ACCCACCCCTACTCTAAAGCA 60.203 52.381 0.00 0.00 0.00 3.91
92 93 1.581223 ACCCACCCCTACTCTAAAGC 58.419 55.000 0.00 0.00 0.00 3.51
93 94 4.382362 CGTTAACCCACCCCTACTCTAAAG 60.382 50.000 0.00 0.00 0.00 1.85
94 95 3.515104 CGTTAACCCACCCCTACTCTAAA 59.485 47.826 0.00 0.00 0.00 1.85
95 96 3.099141 CGTTAACCCACCCCTACTCTAA 58.901 50.000 0.00 0.00 0.00 2.10
96 97 2.311542 TCGTTAACCCACCCCTACTCTA 59.688 50.000 0.00 0.00 0.00 2.43
97 98 1.077663 TCGTTAACCCACCCCTACTCT 59.922 52.381 0.00 0.00 0.00 3.24
98 99 1.479730 CTCGTTAACCCACCCCTACTC 59.520 57.143 0.00 0.00 0.00 2.59
99 100 1.203225 ACTCGTTAACCCACCCCTACT 60.203 52.381 0.00 0.00 0.00 2.57
100 101 1.269958 ACTCGTTAACCCACCCCTAC 58.730 55.000 0.00 0.00 0.00 3.18
101 102 1.624813 CAACTCGTTAACCCACCCCTA 59.375 52.381 0.00 0.00 0.00 3.53
102 103 0.399075 CAACTCGTTAACCCACCCCT 59.601 55.000 0.00 0.00 0.00 4.79
103 104 0.109153 ACAACTCGTTAACCCACCCC 59.891 55.000 0.00 0.00 0.00 4.95
104 105 1.875514 GAACAACTCGTTAACCCACCC 59.124 52.381 0.00 0.00 38.19 4.61
105 106 1.528161 CGAACAACTCGTTAACCCACC 59.472 52.381 0.00 0.00 42.89 4.61
106 107 2.936050 CGAACAACTCGTTAACCCAC 57.064 50.000 0.00 0.00 42.89 4.61
116 117 8.572976 GTTTAAAGAGTTTCAAACGAACAACTC 58.427 33.333 3.21 3.21 33.34 3.01
117 118 8.294577 AGTTTAAAGAGTTTCAAACGAACAACT 58.705 29.630 0.00 0.00 36.29 3.16
118 119 8.443898 AGTTTAAAGAGTTTCAAACGAACAAC 57.556 30.769 0.00 0.00 36.29 3.32
119 120 8.291032 TGAGTTTAAAGAGTTTCAAACGAACAA 58.709 29.630 0.00 0.00 36.29 2.83
120 121 7.808672 TGAGTTTAAAGAGTTTCAAACGAACA 58.191 30.769 0.00 0.00 36.29 3.18
121 122 8.734030 CATGAGTTTAAAGAGTTTCAAACGAAC 58.266 33.333 0.00 0.00 36.29 3.95
122 123 8.670135 TCATGAGTTTAAAGAGTTTCAAACGAA 58.330 29.630 0.00 0.00 36.29 3.85
123 124 8.203937 TCATGAGTTTAAAGAGTTTCAAACGA 57.796 30.769 0.00 0.00 36.29 3.85
124 125 8.734030 GTTCATGAGTTTAAAGAGTTTCAAACG 58.266 33.333 0.00 0.00 36.29 3.60
125 126 8.734030 CGTTCATGAGTTTAAAGAGTTTCAAAC 58.266 33.333 0.00 0.00 0.00 2.93
126 127 7.431084 GCGTTCATGAGTTTAAAGAGTTTCAAA 59.569 33.333 0.00 0.00 0.00 2.69
127 128 6.910433 GCGTTCATGAGTTTAAAGAGTTTCAA 59.090 34.615 0.00 0.00 0.00 2.69
128 129 6.260050 AGCGTTCATGAGTTTAAAGAGTTTCA 59.740 34.615 0.00 0.00 0.00 2.69
129 130 6.659776 AGCGTTCATGAGTTTAAAGAGTTTC 58.340 36.000 0.00 0.00 0.00 2.78
130 131 6.619801 AGCGTTCATGAGTTTAAAGAGTTT 57.380 33.333 0.00 0.00 0.00 2.66
131 132 6.038271 ACAAGCGTTCATGAGTTTAAAGAGTT 59.962 34.615 0.00 0.00 0.00 3.01
132 133 5.527582 ACAAGCGTTCATGAGTTTAAAGAGT 59.472 36.000 0.00 0.00 0.00 3.24
133 134 5.990408 ACAAGCGTTCATGAGTTTAAAGAG 58.010 37.500 0.00 0.00 0.00 2.85
134 135 6.371809 AACAAGCGTTCATGAGTTTAAAGA 57.628 33.333 0.00 0.00 0.00 2.52
135 136 8.728088 ATTAACAAGCGTTCATGAGTTTAAAG 57.272 30.769 0.00 0.00 36.52 1.85
146 147 8.484799 CGCTCTTTATATATTAACAAGCGTTCA 58.515 33.333 18.92 0.00 43.54 3.18
147 148 8.846452 CGCTCTTTATATATTAACAAGCGTTC 57.154 34.615 18.92 0.00 43.54 3.95
151 152 9.931210 AAACACGCTCTTTATATATTAACAAGC 57.069 29.630 0.00 0.00 0.00 4.01
177 178 9.810545 CAACTTATTTTCTAAGTCACCCAAAAA 57.189 29.630 0.00 0.00 36.82 1.94
178 179 7.923878 GCAACTTATTTTCTAAGTCACCCAAAA 59.076 33.333 0.00 0.00 36.82 2.44
179 180 7.430441 GCAACTTATTTTCTAAGTCACCCAAA 58.570 34.615 0.00 0.00 36.82 3.28
180 181 6.015772 GGCAACTTATTTTCTAAGTCACCCAA 60.016 38.462 0.00 0.00 36.82 4.12
181 182 5.475564 GGCAACTTATTTTCTAAGTCACCCA 59.524 40.000 0.00 0.00 36.82 4.51
182 183 5.950883 GGCAACTTATTTTCTAAGTCACCC 58.049 41.667 0.00 0.00 36.82 4.61
200 201 2.579410 TTAAGTTGGGGAGAGGCAAC 57.421 50.000 0.00 0.00 0.00 4.17
201 202 3.603965 TTTTAAGTTGGGGAGAGGCAA 57.396 42.857 0.00 0.00 0.00 4.52
202 203 3.496331 CTTTTTAAGTTGGGGAGAGGCA 58.504 45.455 0.00 0.00 0.00 4.75
203 204 2.826128 CCTTTTTAAGTTGGGGAGAGGC 59.174 50.000 0.00 0.00 0.00 4.70
204 205 3.181422 ACCCTTTTTAAGTTGGGGAGAGG 60.181 47.826 11.69 0.00 43.72 3.69
205 206 4.079970 GACCCTTTTTAAGTTGGGGAGAG 58.920 47.826 11.69 0.00 43.72 3.20
206 207 3.464080 TGACCCTTTTTAAGTTGGGGAGA 59.536 43.478 11.69 0.00 43.72 3.71
207 208 3.839778 TGACCCTTTTTAAGTTGGGGAG 58.160 45.455 11.69 0.00 43.72 4.30
208 209 3.975479 TGACCCTTTTTAAGTTGGGGA 57.025 42.857 11.69 0.00 43.72 4.81
209 210 4.416516 AGATGACCCTTTTTAAGTTGGGG 58.583 43.478 11.69 0.00 43.72 4.96
210 211 6.419484 AAAGATGACCCTTTTTAAGTTGGG 57.581 37.500 7.06 7.06 44.89 4.12
211 212 9.996554 ATTTAAAGATGACCCTTTTTAAGTTGG 57.003 29.630 0.00 0.00 37.52 3.77
259 260 8.215736 GGGCCTTCTAAACTAGTTATGGAATAA 58.784 37.037 8.92 0.00 36.20 1.40
260 261 7.348801 TGGGCCTTCTAAACTAGTTATGGAATA 59.651 37.037 8.92 0.00 0.00 1.75
261 262 6.159751 TGGGCCTTCTAAACTAGTTATGGAAT 59.840 38.462 8.92 0.00 0.00 3.01
262 263 5.489637 TGGGCCTTCTAAACTAGTTATGGAA 59.510 40.000 8.92 11.90 0.00 3.53
263 264 5.034200 TGGGCCTTCTAAACTAGTTATGGA 58.966 41.667 8.92 4.90 0.00 3.41
264 265 5.367945 TGGGCCTTCTAAACTAGTTATGG 57.632 43.478 8.92 6.50 0.00 2.74
265 266 8.974060 TTATTGGGCCTTCTAAACTAGTTATG 57.026 34.615 8.92 5.05 0.00 1.90
276 277 8.311836 CGTCTCTTATATTTATTGGGCCTTCTA 58.688 37.037 4.53 0.00 0.00 2.10
277 278 7.162082 CGTCTCTTATATTTATTGGGCCTTCT 58.838 38.462 4.53 0.00 0.00 2.85
278 279 6.371825 CCGTCTCTTATATTTATTGGGCCTTC 59.628 42.308 4.53 0.00 0.00 3.46
279 280 6.238648 CCGTCTCTTATATTTATTGGGCCTT 58.761 40.000 4.53 0.00 0.00 4.35
280 281 5.803470 GCCGTCTCTTATATTTATTGGGCCT 60.803 44.000 4.53 0.00 0.00 5.19
281 282 4.395231 GCCGTCTCTTATATTTATTGGGCC 59.605 45.833 0.00 0.00 0.00 5.80
282 283 5.246307 AGCCGTCTCTTATATTTATTGGGC 58.754 41.667 0.00 0.00 35.97 5.36
283 284 8.883731 CATAAGCCGTCTCTTATATTTATTGGG 58.116 37.037 0.00 0.00 37.20 4.12
284 285 8.883731 CCATAAGCCGTCTCTTATATTTATTGG 58.116 37.037 0.00 0.00 37.20 3.16
285 286 9.653287 TCCATAAGCCGTCTCTTATATTTATTG 57.347 33.333 0.00 0.00 37.20 1.90
289 290 8.974060 TTTTCCATAAGCCGTCTCTTATATTT 57.026 30.769 0.00 0.00 37.20 1.40
290 291 7.173390 GCTTTTCCATAAGCCGTCTCTTATATT 59.827 37.037 0.00 0.00 43.69 1.28
291 292 6.651225 GCTTTTCCATAAGCCGTCTCTTATAT 59.349 38.462 0.00 0.00 43.69 0.86
292 293 5.989777 GCTTTTCCATAAGCCGTCTCTTATA 59.010 40.000 0.00 0.00 43.69 0.98
293 294 4.816925 GCTTTTCCATAAGCCGTCTCTTAT 59.183 41.667 0.00 0.00 43.69 1.73
294 295 4.189231 GCTTTTCCATAAGCCGTCTCTTA 58.811 43.478 0.00 0.00 43.69 2.10
295 296 3.010420 GCTTTTCCATAAGCCGTCTCTT 58.990 45.455 0.00 0.00 43.69 2.85
296 297 2.633488 GCTTTTCCATAAGCCGTCTCT 58.367 47.619 0.00 0.00 43.69 3.10
304 305 3.549794 CTCTCCCCAGCTTTTCCATAAG 58.450 50.000 0.00 0.00 0.00 1.73
305 306 2.357154 GCTCTCCCCAGCTTTTCCATAA 60.357 50.000 0.00 0.00 36.38 1.90
306 307 1.212935 GCTCTCCCCAGCTTTTCCATA 59.787 52.381 0.00 0.00 36.38 2.74
307 308 0.033699 GCTCTCCCCAGCTTTTCCAT 60.034 55.000 0.00 0.00 36.38 3.41
308 309 1.380302 GCTCTCCCCAGCTTTTCCA 59.620 57.895 0.00 0.00 36.38 3.53
309 310 1.379176 GGCTCTCCCCAGCTTTTCC 60.379 63.158 0.00 0.00 39.58 3.13
310 311 1.746991 CGGCTCTCCCCAGCTTTTC 60.747 63.158 0.00 0.00 39.58 2.29
311 312 2.352805 CGGCTCTCCCCAGCTTTT 59.647 61.111 0.00 0.00 39.58 2.27
312 313 3.721706 CCGGCTCTCCCCAGCTTT 61.722 66.667 0.00 0.00 39.58 3.51
316 317 1.700042 AATAAGCCGGCTCTCCCCAG 61.700 60.000 32.93 0.00 0.00 4.45
317 318 1.279025 AAATAAGCCGGCTCTCCCCA 61.279 55.000 32.93 11.30 0.00 4.96
318 319 0.106669 AAAATAAGCCGGCTCTCCCC 60.107 55.000 32.93 0.00 0.00 4.81
319 320 1.763968 AAAAATAAGCCGGCTCTCCC 58.236 50.000 32.93 0.00 0.00 4.30
335 336 5.344884 CAGTTCTTTTGGACGGCTTAAAAA 58.655 37.500 5.68 2.27 0.00 1.94
336 337 4.202070 CCAGTTCTTTTGGACGGCTTAAAA 60.202 41.667 0.00 0.00 37.96 1.52
337 338 3.316868 CCAGTTCTTTTGGACGGCTTAAA 59.683 43.478 0.00 0.00 37.96 1.52
338 339 2.882137 CCAGTTCTTTTGGACGGCTTAA 59.118 45.455 0.00 0.00 37.96 1.85
339 340 2.500229 CCAGTTCTTTTGGACGGCTTA 58.500 47.619 0.00 0.00 37.96 3.09
340 341 1.318576 CCAGTTCTTTTGGACGGCTT 58.681 50.000 0.00 0.00 37.96 4.35
341 342 1.172812 GCCAGTTCTTTTGGACGGCT 61.173 55.000 0.00 0.00 37.96 5.52
342 343 1.285950 GCCAGTTCTTTTGGACGGC 59.714 57.895 0.00 0.00 37.96 5.68
343 344 1.956802 GGCCAGTTCTTTTGGACGG 59.043 57.895 0.00 0.00 37.96 4.79
345 346 2.820197 CCTTAGGCCAGTTCTTTTGGAC 59.180 50.000 5.01 0.00 44.54 4.02
346 347 2.445525 ACCTTAGGCCAGTTCTTTTGGA 59.554 45.455 5.01 0.00 37.96 3.53
347 348 2.820197 GACCTTAGGCCAGTTCTTTTGG 59.180 50.000 5.01 0.00 38.78 3.28
348 349 2.484264 CGACCTTAGGCCAGTTCTTTTG 59.516 50.000 5.01 0.00 0.00 2.44
349 350 2.552373 CCGACCTTAGGCCAGTTCTTTT 60.552 50.000 5.01 0.00 0.00 2.27
350 351 1.003233 CCGACCTTAGGCCAGTTCTTT 59.997 52.381 5.01 0.00 0.00 2.52
351 352 0.613777 CCGACCTTAGGCCAGTTCTT 59.386 55.000 5.01 0.00 0.00 2.52
352 353 0.544595 ACCGACCTTAGGCCAGTTCT 60.545 55.000 5.01 0.00 0.00 3.01
353 354 0.323957 AACCGACCTTAGGCCAGTTC 59.676 55.000 5.01 0.00 0.00 3.01
354 355 1.553704 CTAACCGACCTTAGGCCAGTT 59.446 52.381 5.01 1.87 0.00 3.16
355 356 1.192428 CTAACCGACCTTAGGCCAGT 58.808 55.000 5.01 0.00 0.00 4.00
356 357 1.481871 TCTAACCGACCTTAGGCCAG 58.518 55.000 5.01 0.00 0.00 4.85
357 358 2.169769 CAATCTAACCGACCTTAGGCCA 59.830 50.000 5.01 0.00 0.00 5.36
358 359 2.433239 TCAATCTAACCGACCTTAGGCC 59.567 50.000 0.00 0.00 0.00 5.19
359 360 3.814005 TCAATCTAACCGACCTTAGGC 57.186 47.619 0.00 0.00 0.00 3.93
360 361 7.286215 TCTATTCAATCTAACCGACCTTAGG 57.714 40.000 0.00 0.00 0.00 2.69
361 362 7.815068 CCATCTATTCAATCTAACCGACCTTAG 59.185 40.741 0.00 0.00 0.00 2.18
362 363 7.289317 ACCATCTATTCAATCTAACCGACCTTA 59.711 37.037 0.00 0.00 0.00 2.69
363 364 6.099845 ACCATCTATTCAATCTAACCGACCTT 59.900 38.462 0.00 0.00 0.00 3.50
364 365 5.602978 ACCATCTATTCAATCTAACCGACCT 59.397 40.000 0.00 0.00 0.00 3.85
365 366 5.855045 ACCATCTATTCAATCTAACCGACC 58.145 41.667 0.00 0.00 0.00 4.79
366 367 6.642950 CAGACCATCTATTCAATCTAACCGAC 59.357 42.308 0.00 0.00 0.00 4.79
367 368 6.549736 TCAGACCATCTATTCAATCTAACCGA 59.450 38.462 0.00 0.00 0.00 4.69
368 369 6.749139 TCAGACCATCTATTCAATCTAACCG 58.251 40.000 0.00 0.00 0.00 4.44
369 370 8.207545 ACTTCAGACCATCTATTCAATCTAACC 58.792 37.037 0.00 0.00 0.00 2.85
372 373 9.647918 AGTACTTCAGACCATCTATTCAATCTA 57.352 33.333 0.00 0.00 0.00 1.98
373 374 8.546083 AGTACTTCAGACCATCTATTCAATCT 57.454 34.615 0.00 0.00 0.00 2.40
374 375 9.685828 GTAGTACTTCAGACCATCTATTCAATC 57.314 37.037 0.00 0.00 0.00 2.67
375 376 8.353684 CGTAGTACTTCAGACCATCTATTCAAT 58.646 37.037 0.00 0.00 0.00 2.57
376 377 7.555195 TCGTAGTACTTCAGACCATCTATTCAA 59.445 37.037 0.00 0.00 0.00 2.69
377 378 7.052248 TCGTAGTACTTCAGACCATCTATTCA 58.948 38.462 0.00 0.00 0.00 2.57
378 379 7.493743 TCGTAGTACTTCAGACCATCTATTC 57.506 40.000 0.00 0.00 0.00 1.75
379 380 7.876936 TTCGTAGTACTTCAGACCATCTATT 57.123 36.000 0.00 0.00 0.00 1.73
380 381 7.876936 TTTCGTAGTACTTCAGACCATCTAT 57.123 36.000 0.00 0.00 0.00 1.98
381 382 7.876936 ATTTCGTAGTACTTCAGACCATCTA 57.123 36.000 0.00 0.00 0.00 1.98
382 383 6.777213 ATTTCGTAGTACTTCAGACCATCT 57.223 37.500 0.00 0.00 0.00 2.90
383 384 8.969267 CAATATTTCGTAGTACTTCAGACCATC 58.031 37.037 0.00 0.00 0.00 3.51
384 385 8.475639 ACAATATTTCGTAGTACTTCAGACCAT 58.524 33.333 0.00 0.00 0.00 3.55
385 386 7.833786 ACAATATTTCGTAGTACTTCAGACCA 58.166 34.615 0.00 0.00 0.00 4.02
386 387 7.972277 TGACAATATTTCGTAGTACTTCAGACC 59.028 37.037 0.00 0.00 0.00 3.85
387 388 8.796278 GTGACAATATTTCGTAGTACTTCAGAC 58.204 37.037 0.00 0.00 0.00 3.51
388 389 8.517056 TGTGACAATATTTCGTAGTACTTCAGA 58.483 33.333 0.00 0.00 0.00 3.27
389 390 8.584600 GTGTGACAATATTTCGTAGTACTTCAG 58.415 37.037 0.00 0.00 0.00 3.02
390 391 7.271868 CGTGTGACAATATTTCGTAGTACTTCA 59.728 37.037 0.00 0.00 0.00 3.02
391 392 7.482743 TCGTGTGACAATATTTCGTAGTACTTC 59.517 37.037 0.00 0.00 0.00 3.01
392 393 7.307694 TCGTGTGACAATATTTCGTAGTACTT 58.692 34.615 0.00 0.00 0.00 2.24
393 394 6.845302 TCGTGTGACAATATTTCGTAGTACT 58.155 36.000 0.00 0.00 0.00 2.73
394 395 7.219535 ACATCGTGTGACAATATTTCGTAGTAC 59.780 37.037 0.00 0.00 0.00 2.73
395 396 7.252708 ACATCGTGTGACAATATTTCGTAGTA 58.747 34.615 0.00 0.00 0.00 1.82
396 397 6.097356 ACATCGTGTGACAATATTTCGTAGT 58.903 36.000 0.00 0.00 0.00 2.73
397 398 6.569228 ACATCGTGTGACAATATTTCGTAG 57.431 37.500 0.00 0.00 0.00 3.51
398 399 8.463456 TTTACATCGTGTGACAATATTTCGTA 57.537 30.769 0.00 0.00 0.00 3.43
399 400 6.954616 TTACATCGTGTGACAATATTTCGT 57.045 33.333 0.00 0.00 0.00 3.85
400 401 7.955324 AGTTTTACATCGTGTGACAATATTTCG 59.045 33.333 0.00 0.00 0.00 3.46
401 402 9.051027 CAGTTTTACATCGTGTGACAATATTTC 57.949 33.333 0.00 0.00 0.00 2.17
402 403 8.564574 ACAGTTTTACATCGTGTGACAATATTT 58.435 29.630 0.00 0.00 0.00 1.40
403 404 8.015087 CACAGTTTTACATCGTGTGACAATATT 58.985 33.333 0.00 0.00 40.84 1.28
404 405 7.172532 ACACAGTTTTACATCGTGTGACAATAT 59.827 33.333 7.72 0.00 40.84 1.28
405 406 6.480651 ACACAGTTTTACATCGTGTGACAATA 59.519 34.615 7.72 0.00 40.84 1.90
406 407 5.295787 ACACAGTTTTACATCGTGTGACAAT 59.704 36.000 7.72 0.00 40.84 2.71
407 408 4.632251 ACACAGTTTTACATCGTGTGACAA 59.368 37.500 7.72 0.00 40.84 3.18
408 409 4.185394 ACACAGTTTTACATCGTGTGACA 58.815 39.130 7.72 0.00 40.84 3.58
409 410 4.789095 ACACAGTTTTACATCGTGTGAC 57.211 40.909 7.72 0.59 40.84 3.67
412 413 4.393680 ACAACACACAGTTTTACATCGTGT 59.606 37.500 0.00 0.00 41.30 4.49
413 414 4.728131 CACAACACACAGTTTTACATCGTG 59.272 41.667 0.00 0.00 38.74 4.35
414 415 4.393680 ACACAACACACAGTTTTACATCGT 59.606 37.500 0.00 0.00 38.74 3.73
415 416 4.904116 ACACAACACACAGTTTTACATCG 58.096 39.130 0.00 0.00 38.74 3.84
416 417 6.090129 ACAACACAACACACAGTTTTACATC 58.910 36.000 0.00 0.00 38.74 3.06
417 418 6.019779 ACAACACAACACACAGTTTTACAT 57.980 33.333 0.00 0.00 38.74 2.29
418 419 5.440234 ACAACACAACACACAGTTTTACA 57.560 34.783 0.00 0.00 38.74 2.41
419 420 6.604930 AGTACAACACAACACACAGTTTTAC 58.395 36.000 0.00 0.00 38.74 2.01
420 421 6.804770 AGTACAACACAACACACAGTTTTA 57.195 33.333 0.00 0.00 38.74 1.52
421 422 5.699097 AGTACAACACAACACACAGTTTT 57.301 34.783 0.00 0.00 38.74 2.43
422 423 6.604930 GTTAGTACAACACAACACACAGTTT 58.395 36.000 0.00 0.00 38.74 2.66
423 424 5.163933 CGTTAGTACAACACAACACACAGTT 60.164 40.000 0.00 0.00 42.42 3.16
424 425 4.327898 CGTTAGTACAACACAACACACAGT 59.672 41.667 0.00 0.00 0.00 3.55
425 426 4.563580 TCGTTAGTACAACACAACACACAG 59.436 41.667 0.00 0.00 0.00 3.66
426 427 4.492611 TCGTTAGTACAACACAACACACA 58.507 39.130 0.00 0.00 0.00 3.72
427 428 4.563976 ACTCGTTAGTACAACACAACACAC 59.436 41.667 0.00 0.00 32.84 3.82
428 429 4.746729 ACTCGTTAGTACAACACAACACA 58.253 39.130 0.00 0.00 32.84 3.72
429 430 5.707411 AACTCGTTAGTACAACACAACAC 57.293 39.130 0.00 0.00 33.75 3.32
430 431 7.824704 TTAAACTCGTTAGTACAACACAACA 57.175 32.000 0.00 0.00 33.75 3.33
431 432 8.542132 TCATTAAACTCGTTAGTACAACACAAC 58.458 33.333 0.00 0.00 33.75 3.32
432 433 8.645730 TCATTAAACTCGTTAGTACAACACAA 57.354 30.769 0.00 0.00 33.75 3.33
433 434 7.922278 ACTCATTAAACTCGTTAGTACAACACA 59.078 33.333 0.00 0.00 33.75 3.72
434 435 8.290663 ACTCATTAAACTCGTTAGTACAACAC 57.709 34.615 0.00 0.00 33.75 3.32
435 436 8.757789 CAACTCATTAAACTCGTTAGTACAACA 58.242 33.333 0.00 0.00 33.75 3.33
436 437 7.739043 GCAACTCATTAAACTCGTTAGTACAAC 59.261 37.037 0.00 0.00 33.75 3.32
437 438 7.654520 AGCAACTCATTAAACTCGTTAGTACAA 59.345 33.333 0.00 0.00 33.75 2.41
438 439 7.149973 AGCAACTCATTAAACTCGTTAGTACA 58.850 34.615 0.00 0.00 33.75 2.90
439 440 7.578169 AGCAACTCATTAAACTCGTTAGTAC 57.422 36.000 0.00 0.00 33.75 2.73
440 441 7.654520 ACAAGCAACTCATTAAACTCGTTAGTA 59.345 33.333 0.00 0.00 33.75 1.82
441 442 6.482308 ACAAGCAACTCATTAAACTCGTTAGT 59.518 34.615 0.00 0.00 37.65 2.24
442 443 6.888430 ACAAGCAACTCATTAAACTCGTTAG 58.112 36.000 0.00 0.00 0.00 2.34
443 444 6.480651 TGACAAGCAACTCATTAAACTCGTTA 59.519 34.615 0.00 0.00 0.00 3.18
444 445 5.295787 TGACAAGCAACTCATTAAACTCGTT 59.704 36.000 0.00 0.00 0.00 3.85
445 446 4.814234 TGACAAGCAACTCATTAAACTCGT 59.186 37.500 0.00 0.00 0.00 4.18
446 447 5.342806 TGACAAGCAACTCATTAAACTCG 57.657 39.130 0.00 0.00 0.00 4.18
447 448 7.196331 AGTTTGACAAGCAACTCATTAAACTC 58.804 34.615 4.77 0.00 35.91 3.01
448 449 7.100458 AGTTTGACAAGCAACTCATTAAACT 57.900 32.000 4.77 0.00 35.91 2.66
449 450 6.140737 CGAGTTTGACAAGCAACTCATTAAAC 59.859 38.462 15.42 0.00 35.87 2.01
450 451 6.183360 ACGAGTTTGACAAGCAACTCATTAAA 60.183 34.615 15.42 0.00 35.87 1.52
451 452 5.295787 ACGAGTTTGACAAGCAACTCATTAA 59.704 36.000 15.42 0.00 35.87 1.40
452 453 4.814234 ACGAGTTTGACAAGCAACTCATTA 59.186 37.500 15.42 0.00 35.87 1.90
453 454 3.627577 ACGAGTTTGACAAGCAACTCATT 59.372 39.130 15.42 2.93 35.87 2.57
454 455 3.206150 ACGAGTTTGACAAGCAACTCAT 58.794 40.909 15.42 1.42 35.87 2.90
455 456 2.627945 ACGAGTTTGACAAGCAACTCA 58.372 42.857 15.42 0.00 35.87 3.41
456 457 3.675467 AACGAGTTTGACAAGCAACTC 57.325 42.857 4.77 6.62 35.91 3.01
457 458 3.002348 GCTAACGAGTTTGACAAGCAACT 59.998 43.478 4.77 0.00 35.91 3.16
458 459 3.002348 AGCTAACGAGTTTGACAAGCAAC 59.998 43.478 4.77 0.00 35.91 4.17
459 460 3.202906 AGCTAACGAGTTTGACAAGCAA 58.797 40.909 4.77 0.00 33.88 3.91
460 461 2.833794 AGCTAACGAGTTTGACAAGCA 58.166 42.857 4.77 0.00 0.00 3.91
461 462 3.247648 TCAAGCTAACGAGTTTGACAAGC 59.752 43.478 0.71 0.00 44.97 4.01
462 463 4.084328 CCTCAAGCTAACGAGTTTGACAAG 60.084 45.833 0.71 0.00 44.97 3.16
463 464 3.807622 CCTCAAGCTAACGAGTTTGACAA 59.192 43.478 0.71 0.00 44.97 3.18
464 465 3.181469 ACCTCAAGCTAACGAGTTTGACA 60.181 43.478 0.71 0.00 44.97 3.58
465 466 3.391049 ACCTCAAGCTAACGAGTTTGAC 58.609 45.455 0.71 0.00 44.97 3.18
466 467 3.650139 GACCTCAAGCTAACGAGTTTGA 58.350 45.455 4.50 4.50 46.87 2.69
467 468 2.408704 CGACCTCAAGCTAACGAGTTTG 59.591 50.000 0.00 0.00 43.30 2.93
468 469 2.295349 TCGACCTCAAGCTAACGAGTTT 59.705 45.455 0.00 0.00 0.00 2.66
469 470 1.884579 TCGACCTCAAGCTAACGAGTT 59.115 47.619 0.00 0.00 0.00 3.01
470 471 1.469308 CTCGACCTCAAGCTAACGAGT 59.531 52.381 0.00 0.00 41.07 4.18
471 472 1.795889 GCTCGACCTCAAGCTAACGAG 60.796 57.143 0.00 0.00 46.11 4.18
472 473 0.170561 GCTCGACCTCAAGCTAACGA 59.829 55.000 0.00 0.00 35.60 3.85
473 474 0.171455 AGCTCGACCTCAAGCTAACG 59.829 55.000 0.00 0.00 46.73 3.18
474 475 1.202582 TCAGCTCGACCTCAAGCTAAC 59.797 52.381 0.00 0.00 46.87 2.34
475 476 1.545841 TCAGCTCGACCTCAAGCTAA 58.454 50.000 0.00 0.00 46.87 3.09
476 477 1.545841 TTCAGCTCGACCTCAAGCTA 58.454 50.000 0.00 0.00 46.87 3.32
478 479 1.731720 ATTTCAGCTCGACCTCAAGC 58.268 50.000 0.00 0.00 38.84 4.01
479 480 5.582269 TCATAAATTTCAGCTCGACCTCAAG 59.418 40.000 0.00 0.00 0.00 3.02
480 481 5.487433 TCATAAATTTCAGCTCGACCTCAA 58.513 37.500 0.00 0.00 0.00 3.02
481 482 5.084818 TCATAAATTTCAGCTCGACCTCA 57.915 39.130 0.00 0.00 0.00 3.86
482 483 6.258727 TCAATCATAAATTTCAGCTCGACCTC 59.741 38.462 0.00 0.00 0.00 3.85
483 484 6.115446 TCAATCATAAATTTCAGCTCGACCT 58.885 36.000 0.00 0.00 0.00 3.85
484 485 6.363577 TCAATCATAAATTTCAGCTCGACC 57.636 37.500 0.00 0.00 0.00 4.79
485 486 8.341173 AGAATCAATCATAAATTTCAGCTCGAC 58.659 33.333 0.00 0.00 0.00 4.20
486 487 8.340443 CAGAATCAATCATAAATTTCAGCTCGA 58.660 33.333 0.00 0.00 0.00 4.04
487 488 8.127327 ACAGAATCAATCATAAATTTCAGCTCG 58.873 33.333 0.00 0.00 0.00 5.03
488 489 9.798994 AACAGAATCAATCATAAATTTCAGCTC 57.201 29.630 0.00 0.00 0.00 4.09
489 490 9.798994 GAACAGAATCAATCATAAATTTCAGCT 57.201 29.630 0.00 0.00 0.00 4.24
490 491 9.577110 TGAACAGAATCAATCATAAATTTCAGC 57.423 29.630 0.00 0.00 0.00 4.26
510 511 9.032931 GCTCGTAGCTCAGTTCTTAATGAACAG 62.033 44.444 15.53 10.26 46.16 3.16
511 512 7.333919 GCTCGTAGCTCAGTTCTTAATGAACA 61.334 42.308 15.53 0.00 46.16 3.18
512 513 5.004916 GCTCGTAGCTCAGTTCTTAATGAAC 59.995 44.000 0.00 8.77 45.21 3.18
513 514 5.103000 GCTCGTAGCTCAGTTCTTAATGAA 58.897 41.667 0.00 0.00 38.45 2.57
514 515 4.673441 GCTCGTAGCTCAGTTCTTAATGA 58.327 43.478 0.00 0.00 38.45 2.57
528 529 2.917971 CTCGGCATATTAAGCTCGTAGC 59.082 50.000 0.00 0.00 42.84 3.58
529 530 2.917971 GCTCGGCATATTAAGCTCGTAG 59.082 50.000 0.00 0.00 0.00 3.51
530 531 2.557056 AGCTCGGCATATTAAGCTCGTA 59.443 45.455 0.00 0.00 41.05 3.43
531 532 1.341531 AGCTCGGCATATTAAGCTCGT 59.658 47.619 0.00 0.00 41.05 4.18
532 533 1.723542 CAGCTCGGCATATTAAGCTCG 59.276 52.381 0.00 0.00 42.99 5.03
533 534 1.462670 GCAGCTCGGCATATTAAGCTC 59.537 52.381 0.00 0.00 42.99 4.09
534 535 1.202687 TGCAGCTCGGCATATTAAGCT 60.203 47.619 0.00 0.00 45.65 3.74
535 536 1.069636 GTGCAGCTCGGCATATTAAGC 60.070 52.381 1.63 0.00 46.92 3.09
536 537 2.478134 GAGTGCAGCTCGGCATATTAAG 59.522 50.000 1.63 0.00 46.92 1.85
537 538 2.158971 TGAGTGCAGCTCGGCATATTAA 60.159 45.455 1.63 0.00 46.92 1.40
538 539 1.412343 TGAGTGCAGCTCGGCATATTA 59.588 47.619 1.63 0.00 46.92 0.98
539 540 0.178767 TGAGTGCAGCTCGGCATATT 59.821 50.000 1.63 0.00 46.92 1.28
540 541 0.395686 ATGAGTGCAGCTCGGCATAT 59.604 50.000 1.63 0.00 46.92 1.78
541 542 0.178767 AATGAGTGCAGCTCGGCATA 59.821 50.000 1.63 0.00 46.92 3.14
542 543 0.178767 TAATGAGTGCAGCTCGGCAT 59.821 50.000 1.63 0.00 46.92 4.40
547 548 4.030977 CGCAAAATTTAATGAGTGCAGCTC 59.969 41.667 10.08 8.75 44.36 4.09
548 549 3.922240 CGCAAAATTTAATGAGTGCAGCT 59.078 39.130 10.08 0.00 32.29 4.24
549 550 3.919804 TCGCAAAATTTAATGAGTGCAGC 59.080 39.130 10.08 0.00 32.29 5.25
550 551 4.030977 GCTCGCAAAATTTAATGAGTGCAG 59.969 41.667 12.69 9.11 36.37 4.41
551 552 3.919804 GCTCGCAAAATTTAATGAGTGCA 59.080 39.130 12.69 0.00 36.37 4.57
554 555 7.377766 TCTTAGCTCGCAAAATTTAATGAGT 57.622 32.000 12.37 5.34 0.00 3.41
581 582 5.605488 ACTTGGAAGTAGGACTAGACCAAAA 59.395 40.000 13.84 0.00 36.45 2.44
582 583 5.011738 CACTTGGAAGTAGGACTAGACCAAA 59.988 44.000 13.84 0.00 36.45 3.28
587 588 3.764434 CTGCACTTGGAAGTAGGACTAGA 59.236 47.826 0.00 0.00 37.08 2.43
588 589 3.118956 CCTGCACTTGGAAGTAGGACTAG 60.119 52.174 3.14 0.00 37.06 2.57
592 593 0.984230 CCCTGCACTTGGAAGTAGGA 59.016 55.000 9.17 0.00 37.06 2.94
599 600 0.979665 CTTCTCTCCCTGCACTTGGA 59.020 55.000 0.00 0.00 0.00 3.53
601 602 0.324285 AGCTTCTCTCCCTGCACTTG 59.676 55.000 0.00 0.00 0.00 3.16
605 606 3.079480 AGAAGCTTCTCTCCCTGCA 57.921 52.632 23.49 0.00 29.94 4.41
621 622 1.897137 ACACGCTGTCAGGACGAGA 60.897 57.895 1.14 0.00 0.00 4.04
634 635 4.611366 GTCACTTTTTATAACAGCACACGC 59.389 41.667 0.00 0.00 38.99 5.34
637 638 7.414436 GTTCAGTCACTTTTTATAACAGCACA 58.586 34.615 0.00 0.00 0.00 4.57
639 640 6.259167 ACGTTCAGTCACTTTTTATAACAGCA 59.741 34.615 0.00 0.00 0.00 4.41
643 644 9.493206 TTTTCACGTTCAGTCACTTTTTATAAC 57.507 29.630 0.00 0.00 0.00 1.89
665 672 3.985925 CAGGCTTGCATGACTTTCTTTTC 59.014 43.478 4.95 0.00 0.00 2.29
666 673 3.385755 ACAGGCTTGCATGACTTTCTTTT 59.614 39.130 14.22 0.00 0.00 2.27
670 677 1.200948 GGACAGGCTTGCATGACTTTC 59.799 52.381 14.22 12.13 0.00 2.62
674 681 1.303561 TGGGACAGGCTTGCATGAC 60.304 57.895 14.22 7.67 0.00 3.06
675 682 3.169378 TGGGACAGGCTTGCATGA 58.831 55.556 14.22 0.00 0.00 3.07
687 697 5.516339 CGCATGTGAATAAGAAAAATGGGAC 59.484 40.000 0.00 0.00 0.00 4.46
711 721 6.594159 TCTTCGATTTACAGGATCCTCAAAAC 59.406 38.462 12.69 12.50 0.00 2.43
714 724 5.932619 TCTTCGATTTACAGGATCCTCAA 57.067 39.130 12.69 6.24 0.00 3.02
718 728 3.810386 GGCTTCTTCGATTTACAGGATCC 59.190 47.826 2.48 2.48 0.00 3.36
732 742 2.186532 AAGAAACCGAGGGCTTCTTC 57.813 50.000 12.75 0.00 0.00 2.87
735 745 0.241213 GCAAAGAAACCGAGGGCTTC 59.759 55.000 0.00 0.00 0.00 3.86
791 801 9.113838 GCCTATTTCTGAGTATTCAAATTCTGA 57.886 33.333 0.00 0.00 31.69 3.27
800 811 6.051717 TGCTCTTGCCTATTTCTGAGTATTC 58.948 40.000 0.00 0.00 38.71 1.75
843 854 2.413837 AGAATCACGGTACAGTGCAAC 58.586 47.619 19.81 12.80 41.61 4.17
844 855 2.831685 AGAATCACGGTACAGTGCAA 57.168 45.000 19.81 5.70 41.61 4.08
846 857 2.412847 GCAAAGAATCACGGTACAGTGC 60.413 50.000 19.81 7.57 41.61 4.40
847 858 2.805671 TGCAAAGAATCACGGTACAGTG 59.194 45.455 18.73 18.73 43.11 3.66
848 859 3.120321 TGCAAAGAATCACGGTACAGT 57.880 42.857 0.00 0.00 0.00 3.55
849 860 4.024048 ACTTTGCAAAGAATCACGGTACAG 60.024 41.667 38.78 13.92 39.31 2.74
850 861 3.880490 ACTTTGCAAAGAATCACGGTACA 59.120 39.130 38.78 1.79 39.31 2.90
851 862 4.483476 ACTTTGCAAAGAATCACGGTAC 57.517 40.909 38.78 0.00 39.31 3.34
852 863 5.333492 CGTTACTTTGCAAAGAATCACGGTA 60.333 40.000 38.78 19.75 39.31 4.02
853 864 4.553938 CGTTACTTTGCAAAGAATCACGGT 60.554 41.667 38.78 20.70 39.31 4.83
855 866 4.768145 TCGTTACTTTGCAAAGAATCACG 58.232 39.130 38.78 33.23 39.31 4.35
856 867 5.795441 GGATCGTTACTTTGCAAAGAATCAC 59.205 40.000 38.78 26.36 39.31 3.06
901 920 0.317160 TGTGTCGGGTCATGAGTCAC 59.683 55.000 0.00 0.00 0.00 3.67
902 921 0.603065 CTGTGTCGGGTCATGAGTCA 59.397 55.000 0.00 0.00 0.00 3.41
906 925 1.005037 GCACTGTGTCGGGTCATGA 60.005 57.895 9.86 0.00 0.00 3.07
914 934 0.036952 ATTCTCTGGGCACTGTGTCG 60.037 55.000 9.86 0.00 0.00 4.35
969 989 4.310022 TTGAATTTAGTCCGGGAATGGT 57.690 40.909 7.35 0.00 0.00 3.55
992 1013 3.303526 GGCGAGAAGTTTAAGCGTTTTGA 60.304 43.478 0.00 0.00 0.00 2.69
1005 1026 1.674057 CTGGACCTTGGCGAGAAGT 59.326 57.895 2.43 0.00 0.00 3.01
1006 1027 1.078848 CCTGGACCTTGGCGAGAAG 60.079 63.158 2.43 0.00 0.00 2.85
1045 1066 0.253044 TGCCGTAGTAGTCGTAGGGT 59.747 55.000 0.00 0.00 0.00 4.34
1052 1073 0.529992 GGGTGCATGCCGTAGTAGTC 60.530 60.000 16.68 0.00 0.00 2.59
1087 1108 1.736645 TGCAGTTTAGCGCCGAGAC 60.737 57.895 2.29 0.00 37.31 3.36
1218 1239 1.206831 GCGGCAGGAAAAAGACGAC 59.793 57.895 0.00 0.00 38.94 4.34
1226 1247 3.842925 GACCACCAGCGGCAGGAAA 62.843 63.158 19.03 0.00 0.00 3.13
1337 1358 2.283966 CCGACCTCCACCCTGTCT 60.284 66.667 0.00 0.00 0.00 3.41
1415 1436 1.529244 GTGCAGGAAACAGCCCACT 60.529 57.895 0.00 0.00 43.15 4.00
1453 1474 2.281276 GTTTCTTCCACCCGCCGT 60.281 61.111 0.00 0.00 0.00 5.68
1472 1502 4.394078 CCGTTCTCGTCGACGCCA 62.394 66.667 32.19 18.10 37.91 5.69
1479 1509 2.100603 CTCCTCGCCGTTCTCGTC 59.899 66.667 0.00 0.00 35.01 4.20
1628 1658 1.080298 GGTCACGTAGTTCCACCCG 60.080 63.158 0.00 0.00 41.61 5.28
1653 1683 0.028242 CTTCGGTCGATCTCCTCACG 59.972 60.000 0.00 0.00 0.00 4.35
1654 1684 0.248702 GCTTCGGTCGATCTCCTCAC 60.249 60.000 0.00 0.00 0.00 3.51
1704 1734 4.229432 CATGACATGCCATGAGCCCATG 62.229 54.545 16.25 13.72 44.98 3.66
1705 1735 0.187606 ATGACATGCCATGAGCCCAT 59.812 50.000 12.53 6.29 42.71 4.00
1706 1736 0.753848 CATGACATGCCATGAGCCCA 60.754 55.000 16.25 4.21 44.98 5.36
1708 1738 0.666913 GACATGACATGCCATGAGCC 59.333 55.000 26.34 12.10 44.98 4.70
1709 1739 0.306840 CGACATGACATGCCATGAGC 59.693 55.000 26.34 16.44 44.98 4.26
1710 1740 0.306840 GCGACATGACATGCCATGAG 59.693 55.000 26.34 19.39 44.98 2.90
1883 1925 7.661847 AGTTTTTAGTGATTGACGAGAGGATTT 59.338 33.333 0.00 0.00 0.00 2.17
1902 1944 1.953686 GCCAGGCACACAGAGTTTTTA 59.046 47.619 6.55 0.00 0.00 1.52
1905 1947 0.395586 TTGCCAGGCACACAGAGTTT 60.396 50.000 15.89 0.00 38.71 2.66
2003 2053 4.717877 TGTTCAGATCCGCATAATCCATT 58.282 39.130 0.00 0.00 0.00 3.16
2031 2081 1.068333 CCCAAGATTGTTCTGCGGTTG 60.068 52.381 0.00 0.00 30.72 3.77
2039 2089 0.387239 GCACGCACCCAAGATTGTTC 60.387 55.000 0.00 0.00 0.00 3.18
2042 2092 1.295357 TACGCACGCACCCAAGATTG 61.295 55.000 0.00 0.00 0.00 2.67
2055 2105 1.359848 CAGTGGAACCTGATACGCAC 58.640 55.000 0.00 0.00 37.80 5.34
2173 2223 2.224305 GGCGTTGCCTCTATGTTCCTAT 60.224 50.000 0.00 0.00 46.69 2.57
2238 2298 7.671827 TCGTGAAGTTTGTTATGTTATGATCG 58.328 34.615 0.00 0.00 0.00 3.69
2247 2307 8.560576 AAATTTGTCTCGTGAAGTTTGTTATG 57.439 30.769 0.00 0.00 0.00 1.90
2331 2391 5.221283 GCCCTTAGTCCTAGTAGCTGTTTAG 60.221 48.000 0.00 0.00 0.00 1.85
2332 2392 4.648307 GCCCTTAGTCCTAGTAGCTGTTTA 59.352 45.833 0.00 0.00 0.00 2.01
2333 2393 3.451540 GCCCTTAGTCCTAGTAGCTGTTT 59.548 47.826 0.00 0.00 0.00 2.83
2334 2394 3.032459 GCCCTTAGTCCTAGTAGCTGTT 58.968 50.000 0.00 0.00 0.00 3.16
2335 2395 2.024273 TGCCCTTAGTCCTAGTAGCTGT 60.024 50.000 0.00 0.00 0.00 4.40
2336 2396 2.667470 TGCCCTTAGTCCTAGTAGCTG 58.333 52.381 0.00 0.00 0.00 4.24
2337 2397 3.141272 AGATGCCCTTAGTCCTAGTAGCT 59.859 47.826 0.00 0.00 0.00 3.32
2338 2398 3.502356 AGATGCCCTTAGTCCTAGTAGC 58.498 50.000 0.00 0.00 0.00 3.58
2339 2399 4.083565 GGAGATGCCCTTAGTCCTAGTAG 58.916 52.174 0.00 0.00 0.00 2.57
2340 2400 3.465966 TGGAGATGCCCTTAGTCCTAGTA 59.534 47.826 0.00 0.00 34.97 1.82
2341 2401 2.247635 TGGAGATGCCCTTAGTCCTAGT 59.752 50.000 0.00 0.00 34.97 2.57
2342 2402 2.896685 CTGGAGATGCCCTTAGTCCTAG 59.103 54.545 0.00 0.00 34.97 3.02
2343 2403 2.964209 CTGGAGATGCCCTTAGTCCTA 58.036 52.381 0.00 0.00 34.97 2.94
2344 2404 1.799933 CTGGAGATGCCCTTAGTCCT 58.200 55.000 0.00 0.00 34.97 3.85
2345 2405 0.107643 GCTGGAGATGCCCTTAGTCC 59.892 60.000 0.00 0.00 34.97 3.85
2346 2406 0.107643 GGCTGGAGATGCCCTTAGTC 59.892 60.000 0.00 0.00 44.32 2.59
2347 2407 2.225792 GGCTGGAGATGCCCTTAGT 58.774 57.895 0.00 0.00 44.32 2.24
2428 2489 2.670148 GGGACCAACTCGCCCTCAT 61.670 63.158 0.00 0.00 38.85 2.90
2561 2624 3.242712 GCCGAAATGTGCCGAAATTTATG 59.757 43.478 0.00 0.00 0.00 1.90
2585 2648 3.061697 ACGTAATGAAAATCCGCGAACTC 59.938 43.478 8.23 0.00 0.00 3.01
2667 2730 2.862347 GAAGGCCGACGACGACGATT 62.862 60.000 20.63 11.87 42.66 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.