Multiple sequence alignment - TraesCS3A01G166000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G166000 chr3A 100.000 2723 0 0 1 2723 170994614 170991892 0.000000e+00 5029.0
1 TraesCS3A01G166000 chr3A 94.628 242 10 2 1490 1728 170984089 170983848 3.310000e-99 372.0
2 TraesCS3A01G166000 chr3A 88.732 71 5 3 2 70 478695227 478695158 1.740000e-12 84.2
3 TraesCS3A01G166000 chr3A 100.000 28 0 0 2202 2229 716379730 716379703 5.000000e-03 52.8
4 TraesCS3A01G166000 chr3D 92.192 1857 86 27 238 2060 157370826 157372657 0.000000e+00 2571.0
5 TraesCS3A01G166000 chr3D 93.697 238 12 2 1487 1721 157377418 157377655 1.200000e-93 353.0
6 TraesCS3A01G166000 chr3D 91.515 165 14 0 83 247 157357354 157357518 7.590000e-56 228.0
7 TraesCS3A01G166000 chr3D 83.665 251 24 7 901 1138 157376940 157377186 1.270000e-53 220.0
8 TraesCS3A01G166000 chr3D 84.426 122 10 3 2249 2361 157374437 157374558 7.970000e-21 111.0
9 TraesCS3A01G166000 chr3D 89.157 83 9 0 1 83 594174514 594174596 1.330000e-18 104.0
10 TraesCS3A01G166000 chr3D 94.340 53 3 0 2669 2721 78103909 78103857 6.250000e-12 82.4
11 TraesCS3A01G166000 chr3B 88.555 1232 107 15 148 1355 228516718 228517939 0.000000e+00 1463.0
12 TraesCS3A01G166000 chr3B 92.734 289 21 0 2356 2644 674179466 674179754 4.190000e-113 418.0
13 TraesCS3A01G166000 chr3B 93.697 238 12 2 1487 1721 228672128 228672365 1.200000e-93 353.0
14 TraesCS3A01G166000 chr3B 81.875 320 38 18 901 1210 228671650 228671959 4.500000e-63 252.0
15 TraesCS3A01G166000 chr3B 89.109 101 11 0 2126 2226 228578672 228578772 2.850000e-25 126.0
16 TraesCS3A01G166000 chr3B 91.304 69 6 0 1 69 797215309 797215377 8.030000e-16 95.3
17 TraesCS3A01G166000 chr3B 100.000 28 0 0 2640 2667 228639664 228639691 5.000000e-03 52.8
18 TraesCS3A01G166000 chr5D 85.781 640 46 12 1114 1726 520194934 520195555 1.060000e-178 636.0
19 TraesCS3A01G166000 chr5D 85.135 518 42 18 1456 1955 520133711 520134211 5.240000e-137 497.0
20 TraesCS3A01G166000 chr5D 85.117 383 31 12 743 1108 520132975 520133348 4.280000e-98 368.0
21 TraesCS3A01G166000 chr5D 92.975 242 14 1 1487 1725 520163968 520164209 1.550000e-92 350.0
22 TraesCS3A01G166000 chr5D 91.121 214 19 0 1131 1344 520133437 520133650 9.540000e-75 291.0
23 TraesCS3A01G166000 chr5D 89.623 212 17 4 899 1108 520194666 520194874 5.780000e-67 265.0
24 TraesCS3A01G166000 chr5D 87.395 238 19 10 874 1107 520163478 520163708 2.080000e-66 263.0
25 TraesCS3A01G166000 chr5A 88.531 497 36 6 1232 1725 647481220 647481698 1.410000e-162 582.0
26 TraesCS3A01G166000 chr5A 84.667 600 43 20 1473 2060 647370636 647371198 1.100000e-153 553.0
27 TraesCS3A01G166000 chr5A 93.571 280 17 1 2359 2638 166703637 166703359 1.510000e-112 416.0
28 TraesCS3A01G166000 chr5A 92.481 266 17 1 1460 1722 633283990 633284255 7.120000e-101 377.0
29 TraesCS3A01G166000 chr5A 86.957 345 29 11 779 1108 647369910 647370253 9.210000e-100 374.0
30 TraesCS3A01G166000 chr5A 90.654 214 15 5 899 1108 633283489 633283701 2.060000e-71 279.0
31 TraesCS3A01G166000 chr5A 96.154 52 2 0 2670 2721 454681195 454681144 4.830000e-13 86.1
32 TraesCS3A01G166000 chr5A 96.154 52 2 0 2670 2721 605740685 605740736 4.830000e-13 86.1
33 TraesCS3A01G166000 chr5B 91.558 308 23 1 1424 1728 655204968 655205275 3.240000e-114 422.0
34 TraesCS3A01G166000 chr5B 92.734 289 20 1 2356 2644 31544622 31544909 1.510000e-112 416.0
35 TraesCS3A01G166000 chr5B 92.657 286 21 0 2359 2644 568349112 568348827 1.950000e-111 412.0
36 TraesCS3A01G166000 chr5B 92.096 291 22 1 2356 2645 472458769 472459059 2.520000e-110 409.0
37 TraesCS3A01G166000 chr5B 85.194 412 41 6 1456 1860 655151428 655151826 3.260000e-109 405.0
38 TraesCS3A01G166000 chr5B 84.278 388 36 15 729 1108 655163453 655163823 3.330000e-94 355.0
39 TraesCS3A01G166000 chr5B 85.755 351 26 14 779 1107 655150719 655151067 1.550000e-92 350.0
40 TraesCS3A01G166000 chr5B 93.506 231 15 0 1114 1344 655151137 655151367 7.220000e-91 344.0
41 TraesCS3A01G166000 chr5B 93.458 214 14 0 1114 1327 635908047 635908260 4.380000e-83 318.0
42 TraesCS3A01G166000 chr5B 93.814 194 12 0 1529 1722 635909052 635909245 2.650000e-75 292.0
43 TraesCS3A01G166000 chr5B 89.908 218 14 1 899 1108 655204381 655204598 9.610000e-70 274.0
44 TraesCS3A01G166000 chr5B 88.532 218 17 5 899 1108 635907761 635907978 9.670000e-65 257.0
45 TraesCS3A01G166000 chr5B 83.007 306 28 7 1114 1395 655204667 655204972 3.480000e-64 255.0
46 TraesCS3A01G166000 chr5B 80.309 259 33 11 1131 1374 655163912 655164167 2.150000e-41 180.0
47 TraesCS3A01G166000 chr5B 96.154 52 2 0 2670 2721 562217009 562216958 4.830000e-13 86.1
48 TraesCS3A01G166000 chr5B 89.706 68 2 5 1891 1958 655205420 655205482 6.250000e-12 82.4
49 TraesCS3A01G166000 chr6B 92.657 286 21 0 2359 2644 38642513 38642228 1.950000e-111 412.0
50 TraesCS3A01G166000 chr6B 90.850 306 24 4 2356 2658 85179938 85180242 9.080000e-110 407.0
51 TraesCS3A01G166000 chr6B 89.313 262 28 0 1460 1721 123368632 123368893 2.020000e-86 329.0
52 TraesCS3A01G166000 chr6B 86.239 218 27 1 1110 1327 123368405 123368619 1.630000e-57 233.0
53 TraesCS3A01G166000 chr6B 93.333 150 10 0 959 1108 123368182 123368331 3.530000e-54 222.0
54 TraesCS3A01G166000 chr6B 96.078 51 2 0 2671 2721 661519176 661519226 1.740000e-12 84.2
55 TraesCS3A01G166000 chr1B 92.388 289 22 0 2356 2644 584216684 584216972 1.950000e-111 412.0
56 TraesCS3A01G166000 chr2B 90.523 306 26 3 2356 2658 686549663 686549968 4.220000e-108 401.0
57 TraesCS3A01G166000 chr2B 94.286 35 2 0 2195 2229 633639046 633639012 1.000000e-03 54.7
58 TraesCS3A01G166000 chr4B 93.878 245 12 1 1487 1728 496285673 496285429 1.540000e-97 366.0
59 TraesCS3A01G166000 chr4B 91.791 134 11 0 965 1098 496286051 496285918 1.290000e-43 187.0
60 TraesCS3A01G166000 chr4B 97.297 37 1 0 2193 2229 285244125 285244089 2.260000e-06 63.9
61 TraesCS3A01G166000 chr2A 98.000 50 1 0 2670 2719 624963406 624963455 1.340000e-13 87.9
62 TraesCS3A01G166000 chr7D 96.154 52 2 0 2670 2721 461122405 461122456 4.830000e-13 86.1
63 TraesCS3A01G166000 chr1D 93.103 58 4 0 2664 2721 384157405 384157348 4.830000e-13 86.1
64 TraesCS3A01G166000 chr6D 96.078 51 2 0 2671 2721 322427629 322427679 1.740000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G166000 chr3A 170991892 170994614 2722 True 5029.000000 5029 100.000000 1 2723 1 chr3A.!!$R2 2722
1 TraesCS3A01G166000 chr3D 157370826 157377655 6829 False 813.750000 2571 88.495000 238 2361 4 chr3D.!!$F3 2123
2 TraesCS3A01G166000 chr3B 228516718 228517939 1221 False 1463.000000 1463 88.555000 148 1355 1 chr3B.!!$F1 1207
3 TraesCS3A01G166000 chr3B 228671650 228672365 715 False 302.500000 353 87.786000 901 1721 2 chr3B.!!$F6 820
4 TraesCS3A01G166000 chr5D 520194666 520195555 889 False 450.500000 636 87.702000 899 1726 2 chr5D.!!$F3 827
5 TraesCS3A01G166000 chr5D 520132975 520134211 1236 False 385.333333 497 87.124333 743 1955 3 chr5D.!!$F1 1212
6 TraesCS3A01G166000 chr5D 520163478 520164209 731 False 306.500000 350 90.185000 874 1725 2 chr5D.!!$F2 851
7 TraesCS3A01G166000 chr5A 647369910 647371198 1288 False 463.500000 553 85.812000 779 2060 2 chr5A.!!$F4 1281
8 TraesCS3A01G166000 chr5A 633283489 633284255 766 False 328.000000 377 91.567500 899 1722 2 chr5A.!!$F3 823
9 TraesCS3A01G166000 chr5B 655150719 655151826 1107 False 366.333333 405 88.151667 779 1860 3 chr5B.!!$F4 1081
10 TraesCS3A01G166000 chr5B 635907761 635909245 1484 False 289.000000 318 91.934667 899 1722 3 chr5B.!!$F3 823
11 TraesCS3A01G166000 chr5B 655163453 655164167 714 False 267.500000 355 82.293500 729 1374 2 chr5B.!!$F5 645
12 TraesCS3A01G166000 chr5B 655204381 655205482 1101 False 258.350000 422 88.544750 899 1958 4 chr5B.!!$F6 1059
13 TraesCS3A01G166000 chr6B 123368182 123368893 711 False 261.333333 329 89.628333 959 1721 3 chr6B.!!$F3 762
14 TraesCS3A01G166000 chr4B 496285429 496286051 622 True 276.500000 366 92.834500 965 1728 2 chr4B.!!$R2 763

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.179094 TGACTGTTCAACGAACGCCT 60.179 50.0 0.0 0.0 44.55 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1785 2781 0.100682 CAGATGCAGCACCTTCATGC 59.899 55.0 4.07 0.0 46.5 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.768381 AGCTTTCTGATTAGTAACCTATTGGC 59.232 38.462 0.00 0.00 36.63 4.52
26 27 6.768381 GCTTTCTGATTAGTAACCTATTGGCT 59.232 38.462 0.00 0.00 36.63 4.75
27 28 7.254932 GCTTTCTGATTAGTAACCTATTGGCTG 60.255 40.741 0.00 0.00 36.63 4.85
28 29 7.432148 TTCTGATTAGTAACCTATTGGCTGA 57.568 36.000 0.00 0.00 36.63 4.26
29 30 6.817184 TCTGATTAGTAACCTATTGGCTGAC 58.183 40.000 0.00 0.00 36.63 3.51
30 31 6.611642 TCTGATTAGTAACCTATTGGCTGACT 59.388 38.462 0.00 0.00 36.63 3.41
31 32 6.582636 TGATTAGTAACCTATTGGCTGACTG 58.417 40.000 0.00 0.00 36.63 3.51
32 33 6.156256 TGATTAGTAACCTATTGGCTGACTGT 59.844 38.462 0.00 0.00 36.63 3.55
33 34 4.910458 AGTAACCTATTGGCTGACTGTT 57.090 40.909 0.00 0.00 36.63 3.16
34 35 4.833390 AGTAACCTATTGGCTGACTGTTC 58.167 43.478 0.00 0.00 36.63 3.18
35 36 3.788227 AACCTATTGGCTGACTGTTCA 57.212 42.857 0.00 0.00 36.63 3.18
36 37 3.788227 ACCTATTGGCTGACTGTTCAA 57.212 42.857 0.00 0.00 36.63 2.69
37 38 3.412386 ACCTATTGGCTGACTGTTCAAC 58.588 45.455 0.00 0.00 36.63 3.18
38 39 2.416547 CCTATTGGCTGACTGTTCAACG 59.583 50.000 0.00 0.00 0.00 4.10
39 40 2.254546 ATTGGCTGACTGTTCAACGA 57.745 45.000 0.00 0.00 0.00 3.85
40 41 2.031258 TTGGCTGACTGTTCAACGAA 57.969 45.000 0.00 0.00 0.00 3.85
41 42 1.295792 TGGCTGACTGTTCAACGAAC 58.704 50.000 0.00 0.00 42.26 3.95
42 43 0.232303 GGCTGACTGTTCAACGAACG 59.768 55.000 0.00 0.00 44.55 3.95
43 44 0.383124 GCTGACTGTTCAACGAACGC 60.383 55.000 0.00 0.00 44.55 4.84
44 45 0.232303 CTGACTGTTCAACGAACGCC 59.768 55.000 0.00 0.00 44.55 5.68
45 46 0.179094 TGACTGTTCAACGAACGCCT 60.179 50.000 0.00 0.00 44.55 5.52
46 47 0.935196 GACTGTTCAACGAACGCCTT 59.065 50.000 0.00 0.00 44.55 4.35
47 48 0.935196 ACTGTTCAACGAACGCCTTC 59.065 50.000 0.00 0.00 44.55 3.46
48 49 1.217882 CTGTTCAACGAACGCCTTCT 58.782 50.000 0.00 0.00 44.55 2.85
49 50 1.597663 CTGTTCAACGAACGCCTTCTT 59.402 47.619 0.00 0.00 44.55 2.52
50 51 2.011222 TGTTCAACGAACGCCTTCTTT 58.989 42.857 0.00 0.00 44.55 2.52
51 52 2.420722 TGTTCAACGAACGCCTTCTTTT 59.579 40.909 0.00 0.00 44.55 2.27
52 53 2.748461 TCAACGAACGCCTTCTTTTG 57.252 45.000 0.00 0.00 0.00 2.44
53 54 2.281517 TCAACGAACGCCTTCTTTTGA 58.718 42.857 0.00 5.71 0.00 2.69
54 55 2.678836 TCAACGAACGCCTTCTTTTGAA 59.321 40.909 0.00 0.00 36.89 2.69
55 56 3.314080 TCAACGAACGCCTTCTTTTGAAT 59.686 39.130 0.00 0.00 37.85 2.57
56 57 4.512198 TCAACGAACGCCTTCTTTTGAATA 59.488 37.500 0.00 0.00 37.85 1.75
57 58 5.007823 TCAACGAACGCCTTCTTTTGAATAA 59.992 36.000 0.00 0.00 37.85 1.40
58 59 5.427036 ACGAACGCCTTCTTTTGAATAAA 57.573 34.783 0.00 0.00 37.85 1.40
59 60 5.449304 ACGAACGCCTTCTTTTGAATAAAG 58.551 37.500 0.00 0.00 37.85 1.85
60 61 4.320953 CGAACGCCTTCTTTTGAATAAAGC 59.679 41.667 0.00 0.00 37.85 3.51
61 62 5.453567 AACGCCTTCTTTTGAATAAAGCT 57.546 34.783 0.00 0.00 37.85 3.74
62 63 5.453567 ACGCCTTCTTTTGAATAAAGCTT 57.546 34.783 0.00 0.00 37.85 3.74
63 64 5.842907 ACGCCTTCTTTTGAATAAAGCTTT 58.157 33.333 17.30 17.30 37.85 3.51
64 65 6.977213 ACGCCTTCTTTTGAATAAAGCTTTA 58.023 32.000 20.71 20.71 37.85 1.85
65 66 7.430441 ACGCCTTCTTTTGAATAAAGCTTTAA 58.570 30.769 22.13 5.53 37.85 1.52
66 67 7.923878 ACGCCTTCTTTTGAATAAAGCTTTAAA 59.076 29.630 22.13 11.37 37.85 1.52
67 68 8.925700 CGCCTTCTTTTGAATAAAGCTTTAAAT 58.074 29.630 22.13 14.21 37.85 1.40
102 103 6.715347 AAAAGACTCTTGTACATTTTGGCT 57.285 33.333 0.00 0.00 0.00 4.75
103 104 5.948992 AAGACTCTTGTACATTTTGGCTC 57.051 39.130 0.00 0.00 0.00 4.70
104 105 4.973168 AGACTCTTGTACATTTTGGCTCA 58.027 39.130 0.00 0.00 0.00 4.26
105 106 4.999950 AGACTCTTGTACATTTTGGCTCAG 59.000 41.667 0.00 0.00 0.00 3.35
106 107 3.503748 ACTCTTGTACATTTTGGCTCAGC 59.496 43.478 0.00 0.00 0.00 4.26
107 108 3.485394 TCTTGTACATTTTGGCTCAGCA 58.515 40.909 0.00 0.00 0.00 4.41
108 109 3.888323 TCTTGTACATTTTGGCTCAGCAA 59.112 39.130 0.00 0.00 0.00 3.91
109 110 4.340666 TCTTGTACATTTTGGCTCAGCAAA 59.659 37.500 0.00 0.00 0.00 3.68
110 111 4.870123 TGTACATTTTGGCTCAGCAAAT 57.130 36.364 0.00 0.00 0.00 2.32
111 112 5.973899 TGTACATTTTGGCTCAGCAAATA 57.026 34.783 0.00 0.00 0.00 1.40
112 113 5.953183 TGTACATTTTGGCTCAGCAAATAG 58.047 37.500 0.00 0.00 0.00 1.73
113 114 4.460948 ACATTTTGGCTCAGCAAATAGG 57.539 40.909 0.00 0.00 0.00 2.57
114 115 4.088634 ACATTTTGGCTCAGCAAATAGGA 58.911 39.130 0.00 0.00 0.00 2.94
115 116 4.713321 ACATTTTGGCTCAGCAAATAGGAT 59.287 37.500 0.00 0.00 0.00 3.24
116 117 5.893255 ACATTTTGGCTCAGCAAATAGGATA 59.107 36.000 0.00 0.00 0.00 2.59
117 118 6.552350 ACATTTTGGCTCAGCAAATAGGATAT 59.448 34.615 0.00 0.00 0.00 1.63
118 119 7.070322 ACATTTTGGCTCAGCAAATAGGATATT 59.930 33.333 0.00 0.00 0.00 1.28
119 120 6.639632 TTTGGCTCAGCAAATAGGATATTC 57.360 37.500 0.00 0.00 0.00 1.75
120 121 4.655963 TGGCTCAGCAAATAGGATATTCC 58.344 43.478 0.00 0.00 36.58 3.01
122 123 5.163055 TGGCTCAGCAAATAGGATATTCCTT 60.163 40.000 0.00 0.00 46.91 3.36
123 124 5.772169 GGCTCAGCAAATAGGATATTCCTTT 59.228 40.000 0.00 0.00 46.91 3.11
124 125 6.294397 GGCTCAGCAAATAGGATATTCCTTTG 60.294 42.308 0.00 2.86 46.91 2.77
125 126 6.488006 GCTCAGCAAATAGGATATTCCTTTGA 59.512 38.462 10.70 3.02 46.91 2.69
126 127 7.013655 GCTCAGCAAATAGGATATTCCTTTGAA 59.986 37.037 10.70 0.00 46.91 2.69
127 128 8.821686 TCAGCAAATAGGATATTCCTTTGAAA 57.178 30.769 10.70 0.00 46.91 2.69
128 129 9.425248 TCAGCAAATAGGATATTCCTTTGAAAT 57.575 29.630 10.70 0.00 46.91 2.17
129 130 9.472361 CAGCAAATAGGATATTCCTTTGAAATG 57.528 33.333 10.70 4.24 46.91 2.32
130 131 9.205513 AGCAAATAGGATATTCCTTTGAAATGT 57.794 29.630 10.70 0.00 46.91 2.71
131 132 9.252962 GCAAATAGGATATTCCTTTGAAATGTG 57.747 33.333 10.70 2.07 46.91 3.21
132 133 9.252962 CAAATAGGATATTCCTTTGAAATGTGC 57.747 33.333 0.59 0.00 46.91 4.57
133 134 5.859205 AGGATATTCCTTTGAAATGTGCC 57.141 39.130 0.00 0.00 46.91 5.01
134 135 5.522641 AGGATATTCCTTTGAAATGTGCCT 58.477 37.500 0.00 0.00 46.91 4.75
135 136 5.960202 AGGATATTCCTTTGAAATGTGCCTT 59.040 36.000 0.00 0.00 46.91 4.35
136 137 6.441604 AGGATATTCCTTTGAAATGTGCCTTT 59.558 34.615 0.00 0.00 46.91 3.11
137 138 6.758416 GGATATTCCTTTGAAATGTGCCTTTC 59.242 38.462 0.00 0.00 33.42 2.62
138 139 4.335400 TTCCTTTGAAATGTGCCTTTCC 57.665 40.909 0.00 0.00 34.83 3.13
139 140 3.303938 TCCTTTGAAATGTGCCTTTCCA 58.696 40.909 0.00 0.00 34.83 3.53
140 141 3.903090 TCCTTTGAAATGTGCCTTTCCAT 59.097 39.130 0.00 0.00 34.83 3.41
141 142 3.998341 CCTTTGAAATGTGCCTTTCCATG 59.002 43.478 0.00 0.00 34.83 3.66
142 143 3.681593 TTGAAATGTGCCTTTCCATGG 57.318 42.857 4.97 4.97 34.83 3.66
143 144 1.901159 TGAAATGTGCCTTTCCATGGG 59.099 47.619 13.02 0.00 34.83 4.00
144 145 2.178580 GAAATGTGCCTTTCCATGGGA 58.821 47.619 13.02 0.00 0.00 4.37
145 146 1.856629 AATGTGCCTTTCCATGGGAG 58.143 50.000 13.02 10.35 31.21 4.30
146 147 0.685458 ATGTGCCTTTCCATGGGAGC 60.685 55.000 13.02 4.37 31.21 4.70
156 157 1.961394 TCCATGGGAGCGACTATGTAC 59.039 52.381 13.02 0.00 0.00 2.90
157 158 1.000955 CCATGGGAGCGACTATGTACC 59.999 57.143 2.85 0.00 0.00 3.34
160 161 0.310232 GGGAGCGACTATGTACCGTC 59.690 60.000 0.00 0.00 0.00 4.79
178 179 1.966451 CGGGATCCTATTTGGCGCC 60.966 63.158 22.73 22.73 35.26 6.53
180 181 1.966451 GGATCCTATTTGGCGCCCG 60.966 63.158 26.77 6.90 35.26 6.13
194 195 0.736325 CGCCCGACTCACTGGTTAAG 60.736 60.000 0.00 0.00 0.00 1.85
197 198 2.673326 GCCCGACTCACTGGTTAAGTAC 60.673 54.545 0.00 0.00 36.83 2.73
198 199 2.415090 CCCGACTCACTGGTTAAGTACG 60.415 54.545 0.00 0.00 36.83 3.67
219 220 1.800681 GCGCACACCCATTCCTTAC 59.199 57.895 0.30 0.00 0.00 2.34
220 221 0.958382 GCGCACACCCATTCCTTACA 60.958 55.000 0.30 0.00 0.00 2.41
249 250 1.295020 ATAGGCCAGCCCAACTAACA 58.705 50.000 5.01 0.00 36.58 2.41
423 438 7.257722 ACATCTGTTTAAACTTTTGGACACAG 58.742 34.615 18.72 5.25 33.19 3.66
446 461 7.826252 ACAGCTGTGAACATTCTTATGTAATCT 59.174 33.333 20.97 0.00 44.14 2.40
566 589 5.058008 CGCGAGTATTTGTGTGAACATTTTC 59.942 40.000 0.00 0.00 0.00 2.29
573 596 6.462552 TTTGTGTGAACATTTTCTGGATCA 57.537 33.333 0.00 0.00 32.36 2.92
637 667 2.661195 GACGGCACATTTTGTAATGCAC 59.339 45.455 0.00 0.00 44.05 4.57
640 670 2.916716 GGCACATTTTGTAATGCACGAG 59.083 45.455 0.00 0.00 44.05 4.18
661 691 3.004629 AGCATTTTGTGAATGAGCGAACA 59.995 39.130 3.12 0.00 0.00 3.18
711 741 5.995565 ATTCCTATAAATCCCGATCGACA 57.004 39.130 18.66 2.03 0.00 4.35
715 745 3.830744 ATAAATCCCGATCGACACCAA 57.169 42.857 18.66 0.00 0.00 3.67
771 801 4.570772 CGTACAGTCGGATCCAAATTTCAT 59.429 41.667 13.41 0.00 0.00 2.57
776 806 2.171659 TCGGATCCAAATTTCATCGGGA 59.828 45.455 13.41 5.79 0.00 5.14
841 890 2.354403 GCTTAGTTCCCACGCTTCCTTA 60.354 50.000 0.00 0.00 0.00 2.69
951 1024 2.852449 TCTCATCGTAATCTCCTCGCT 58.148 47.619 0.00 0.00 0.00 4.93
1035 1126 1.439644 GAAGCGCTCTTCCTCGGAT 59.560 57.895 12.06 0.00 42.18 4.18
1222 1403 2.115910 TGGCCACCAAGAAGCAGG 59.884 61.111 0.00 0.00 0.00 4.85
1355 1599 0.318699 GTTTCCGCTGTCAAAAGGGC 60.319 55.000 0.00 0.00 0.00 5.19
1498 1766 2.277310 CGCGCTCTTCGTCGATCA 60.277 61.111 5.56 0.00 39.02 2.92
1527 1795 1.745489 GGGCATGACGGTGAAGGTC 60.745 63.158 0.00 0.00 34.99 3.85
1737 2716 0.759346 GTTAGAGCCGGATGGATGGT 59.241 55.000 5.05 0.00 37.49 3.55
1738 2717 1.968493 GTTAGAGCCGGATGGATGGTA 59.032 52.381 5.05 0.00 37.49 3.25
1785 2781 7.333672 TGATCATCAATTCAGAGTTTCAGACTG 59.666 37.037 0.00 0.00 39.19 3.51
1786 2782 5.410746 TCATCAATTCAGAGTTTCAGACTGC 59.589 40.000 0.00 0.00 39.19 4.40
1787 2783 4.707105 TCAATTCAGAGTTTCAGACTGCA 58.293 39.130 0.00 0.00 39.19 4.41
1788 2784 5.311265 TCAATTCAGAGTTTCAGACTGCAT 58.689 37.500 0.00 0.00 39.19 3.96
1789 2785 5.180680 TCAATTCAGAGTTTCAGACTGCATG 59.819 40.000 0.00 0.00 39.19 4.06
1790 2786 4.341366 TTCAGAGTTTCAGACTGCATGA 57.659 40.909 0.00 0.00 39.19 3.07
1791 2787 4.341366 TCAGAGTTTCAGACTGCATGAA 57.659 40.909 0.00 0.00 39.19 2.57
1792 2788 4.313282 TCAGAGTTTCAGACTGCATGAAG 58.687 43.478 0.00 0.00 39.19 3.02
1795 2791 3.144506 AGTTTCAGACTGCATGAAGGTG 58.855 45.455 5.47 2.19 37.91 4.00
1796 2792 1.527034 TTCAGACTGCATGAAGGTGC 58.473 50.000 5.47 0.00 45.25 5.01
1797 2793 0.689055 TCAGACTGCATGAAGGTGCT 59.311 50.000 5.47 0.00 45.27 4.40
1929 2946 9.642327 TCGTCTAGTCTAGTAGATGATGTAATC 57.358 37.037 11.18 0.00 45.83 1.75
1971 2988 2.519771 AAGCTTCCTGCAATGATGGA 57.480 45.000 0.00 0.00 45.94 3.41
2023 3041 7.803724 GTTCTATTGTTATGTGAACCTTCGTT 58.196 34.615 0.00 0.00 33.16 3.85
2046 3064 7.911205 CGTTACTCATTTACTACCTCTTCTCTG 59.089 40.741 0.00 0.00 0.00 3.35
2060 3078 7.633789 ACCTCTTCTCTGCCAAAATATAAGAA 58.366 34.615 0.00 0.00 0.00 2.52
2061 3079 7.554476 ACCTCTTCTCTGCCAAAATATAAGAAC 59.446 37.037 0.00 0.00 0.00 3.01
2063 3081 8.498054 TCTTCTCTGCCAAAATATAAGAACTG 57.502 34.615 0.00 0.00 0.00 3.16
2064 3082 7.554118 TCTTCTCTGCCAAAATATAAGAACTGG 59.446 37.037 0.00 0.00 0.00 4.00
2065 3083 6.957631 TCTCTGCCAAAATATAAGAACTGGA 58.042 36.000 0.00 0.00 0.00 3.86
2066 3084 7.402054 TCTCTGCCAAAATATAAGAACTGGAA 58.598 34.615 0.00 0.00 0.00 3.53
2067 3085 7.888021 TCTCTGCCAAAATATAAGAACTGGAAA 59.112 33.333 0.00 0.00 0.00 3.13
2068 3086 8.415950 TCTGCCAAAATATAAGAACTGGAAAA 57.584 30.769 0.00 0.00 0.00 2.29
2070 3088 8.825667 TGCCAAAATATAAGAACTGGAAAAAC 57.174 30.769 0.00 0.00 0.00 2.43
2071 3089 8.424918 TGCCAAAATATAAGAACTGGAAAAACA 58.575 29.630 0.00 0.00 0.00 2.83
2072 3090 9.267084 GCCAAAATATAAGAACTGGAAAAACAA 57.733 29.630 0.00 0.00 0.00 2.83
2083 3101 9.511144 AGAACTGGAAAAACAACTTTATTTACG 57.489 29.630 0.00 0.00 0.00 3.18
2084 3102 7.688478 ACTGGAAAAACAACTTTATTTACGC 57.312 32.000 0.00 0.00 0.00 4.42
2085 3103 7.259161 ACTGGAAAAACAACTTTATTTACGCA 58.741 30.769 0.00 0.00 0.00 5.24
2086 3104 7.923878 ACTGGAAAAACAACTTTATTTACGCAT 59.076 29.630 0.00 0.00 0.00 4.73
2087 3105 9.400638 CTGGAAAAACAACTTTATTTACGCATA 57.599 29.630 0.00 0.00 0.00 3.14
2088 3106 9.182933 TGGAAAAACAACTTTATTTACGCATAC 57.817 29.630 0.00 0.00 0.00 2.39
2089 3107 9.401873 GGAAAAACAACTTTATTTACGCATACT 57.598 29.630 0.00 0.00 0.00 2.12
2092 3110 7.790861 AACAACTTTATTTACGCATACTTGC 57.209 32.000 0.00 0.00 45.78 4.01
2093 3111 6.319399 ACAACTTTATTTACGCATACTTGCC 58.681 36.000 0.00 0.00 46.57 4.52
2094 3112 5.151632 ACTTTATTTACGCATACTTGCCG 57.848 39.130 0.00 0.00 46.57 5.69
2095 3113 4.034742 ACTTTATTTACGCATACTTGCCGG 59.965 41.667 0.00 0.00 46.57 6.13
2096 3114 2.032680 ATTTACGCATACTTGCCGGT 57.967 45.000 1.90 0.00 46.57 5.28
2097 3115 1.080298 TTTACGCATACTTGCCGGTG 58.920 50.000 1.90 0.00 46.57 4.94
2098 3116 0.741574 TTACGCATACTTGCCGGTGG 60.742 55.000 1.90 0.00 46.57 4.61
2099 3117 2.581208 TACGCATACTTGCCGGTGGG 62.581 60.000 1.90 2.83 46.57 4.61
2100 3118 2.828549 GCATACTTGCCGGTGGGG 60.829 66.667 1.90 0.00 43.38 4.96
2101 3119 2.674754 CATACTTGCCGGTGGGGT 59.325 61.111 1.90 0.00 38.44 4.95
2102 3120 1.001393 CATACTTGCCGGTGGGGTT 60.001 57.895 1.90 0.00 38.44 4.11
2103 3121 0.610785 CATACTTGCCGGTGGGGTTT 60.611 55.000 1.90 0.00 38.44 3.27
2104 3122 0.323087 ATACTTGCCGGTGGGGTTTC 60.323 55.000 1.90 0.00 38.44 2.78
2105 3123 2.414658 TACTTGCCGGTGGGGTTTCC 62.415 60.000 1.90 0.00 38.44 3.13
2106 3124 3.801068 CTTGCCGGTGGGGTTTCCA 62.801 63.158 1.90 0.00 44.79 3.53
2147 3165 5.766222 CAAATGAACTTAGCTGCTCAACTT 58.234 37.500 4.91 0.00 0.00 2.66
2151 3169 2.772287 ACTTAGCTGCTCAACTTGTCC 58.228 47.619 4.91 0.00 0.00 4.02
2170 3188 9.041354 ACTTGTCCTAAAGAGATTGTAGAGAAT 57.959 33.333 0.00 0.00 0.00 2.40
2171 3189 9.311916 CTTGTCCTAAAGAGATTGTAGAGAATG 57.688 37.037 0.00 0.00 0.00 2.67
2219 3237 9.593565 ACTCCATCTATCTCATAATGTAAGACA 57.406 33.333 0.00 0.00 0.00 3.41
2301 4947 1.906574 TCCTCGTGACTTTTGGGCTAT 59.093 47.619 0.00 0.00 0.00 2.97
2312 4958 2.203070 GGGCTATGAGCACGGGTG 60.203 66.667 0.21 0.00 44.75 4.61
2315 4961 0.179045 GGCTATGAGCACGGGTGAAT 60.179 55.000 2.38 0.00 44.75 2.57
2331 4986 2.025887 GTGAATGAGAATGGGTGGGTCT 60.026 50.000 0.00 0.00 0.00 3.85
2337 4992 0.991920 GAATGGGTGGGTCTCCTCAA 59.008 55.000 0.00 0.00 0.00 3.02
2342 4997 1.153349 GTGGGTCTCCTCAATCCGC 60.153 63.158 0.00 0.00 0.00 5.54
2345 5000 2.107141 GTCTCCTCAATCCGCCCG 59.893 66.667 0.00 0.00 0.00 6.13
2347 5002 2.107141 CTCCTCAATCCGCCCGAC 59.893 66.667 0.00 0.00 0.00 4.79
2358 5013 3.890674 GCCCGACGAGCTGAAAAT 58.109 55.556 0.00 0.00 0.00 1.82
2359 5014 2.171635 GCCCGACGAGCTGAAAATT 58.828 52.632 0.00 0.00 0.00 1.82
2360 5015 1.365699 GCCCGACGAGCTGAAAATTA 58.634 50.000 0.00 0.00 0.00 1.40
2361 5016 1.327764 GCCCGACGAGCTGAAAATTAG 59.672 52.381 0.00 0.00 0.00 1.73
2362 5017 1.933853 CCCGACGAGCTGAAAATTAGG 59.066 52.381 0.00 0.00 0.00 2.69
2363 5018 1.933853 CCGACGAGCTGAAAATTAGGG 59.066 52.381 0.00 0.00 0.00 3.53
2364 5019 1.933853 CGACGAGCTGAAAATTAGGGG 59.066 52.381 0.00 0.00 0.00 4.79
2365 5020 1.671328 GACGAGCTGAAAATTAGGGGC 59.329 52.381 0.00 0.00 0.00 5.80
2366 5021 1.282157 ACGAGCTGAAAATTAGGGGCT 59.718 47.619 0.00 0.00 0.00 5.19
2367 5022 1.672881 CGAGCTGAAAATTAGGGGCTG 59.327 52.381 0.00 0.00 0.00 4.85
2368 5023 2.728007 GAGCTGAAAATTAGGGGCTGT 58.272 47.619 0.00 0.00 0.00 4.40
2369 5024 3.092301 GAGCTGAAAATTAGGGGCTGTT 58.908 45.455 0.00 0.00 0.00 3.16
2370 5025 3.510459 AGCTGAAAATTAGGGGCTGTTT 58.490 40.909 0.00 0.00 0.00 2.83
2371 5026 3.259123 AGCTGAAAATTAGGGGCTGTTTG 59.741 43.478 0.00 0.00 0.00 2.93
2372 5027 3.617288 GCTGAAAATTAGGGGCTGTTTGG 60.617 47.826 0.00 0.00 0.00 3.28
2373 5028 3.831911 CTGAAAATTAGGGGCTGTTTGGA 59.168 43.478 0.00 0.00 0.00 3.53
2374 5029 4.424842 TGAAAATTAGGGGCTGTTTGGAT 58.575 39.130 0.00 0.00 0.00 3.41
2375 5030 4.843516 TGAAAATTAGGGGCTGTTTGGATT 59.156 37.500 0.00 0.00 0.00 3.01
2376 5031 4.824479 AAATTAGGGGCTGTTTGGATTG 57.176 40.909 0.00 0.00 0.00 2.67
2377 5032 2.990740 TTAGGGGCTGTTTGGATTGT 57.009 45.000 0.00 0.00 0.00 2.71
2378 5033 2.214376 TAGGGGCTGTTTGGATTGTG 57.786 50.000 0.00 0.00 0.00 3.33
2379 5034 0.482446 AGGGGCTGTTTGGATTGTGA 59.518 50.000 0.00 0.00 0.00 3.58
2380 5035 0.603065 GGGGCTGTTTGGATTGTGAC 59.397 55.000 0.00 0.00 0.00 3.67
2381 5036 1.620822 GGGCTGTTTGGATTGTGACT 58.379 50.000 0.00 0.00 0.00 3.41
2382 5037 1.963515 GGGCTGTTTGGATTGTGACTT 59.036 47.619 0.00 0.00 0.00 3.01
2383 5038 2.365293 GGGCTGTTTGGATTGTGACTTT 59.635 45.455 0.00 0.00 0.00 2.66
2384 5039 3.552890 GGGCTGTTTGGATTGTGACTTTC 60.553 47.826 0.00 0.00 0.00 2.62
2385 5040 3.319122 GGCTGTTTGGATTGTGACTTTCT 59.681 43.478 0.00 0.00 0.00 2.52
2386 5041 4.202151 GGCTGTTTGGATTGTGACTTTCTT 60.202 41.667 0.00 0.00 0.00 2.52
2387 5042 5.351458 GCTGTTTGGATTGTGACTTTCTTT 58.649 37.500 0.00 0.00 0.00 2.52
2388 5043 5.232838 GCTGTTTGGATTGTGACTTTCTTTG 59.767 40.000 0.00 0.00 0.00 2.77
2389 5044 6.279513 TGTTTGGATTGTGACTTTCTTTGT 57.720 33.333 0.00 0.00 0.00 2.83
2390 5045 6.696411 TGTTTGGATTGTGACTTTCTTTGTT 58.304 32.000 0.00 0.00 0.00 2.83
2391 5046 7.831753 TGTTTGGATTGTGACTTTCTTTGTTA 58.168 30.769 0.00 0.00 0.00 2.41
2392 5047 8.474025 TGTTTGGATTGTGACTTTCTTTGTTAT 58.526 29.630 0.00 0.00 0.00 1.89
2393 5048 9.959749 GTTTGGATTGTGACTTTCTTTGTTATA 57.040 29.630 0.00 0.00 0.00 0.98
2416 5071 8.876275 ATATATTGTCACATGATTTTTGCCAC 57.124 30.769 0.00 0.00 0.00 5.01
2417 5072 4.397481 TTGTCACATGATTTTTGCCACA 57.603 36.364 0.00 0.00 0.00 4.17
2418 5073 4.603989 TGTCACATGATTTTTGCCACAT 57.396 36.364 0.00 0.00 0.00 3.21
2419 5074 4.958509 TGTCACATGATTTTTGCCACATT 58.041 34.783 0.00 0.00 0.00 2.71
2420 5075 5.366460 TGTCACATGATTTTTGCCACATTT 58.634 33.333 0.00 0.00 0.00 2.32
2421 5076 5.236695 TGTCACATGATTTTTGCCACATTTG 59.763 36.000 0.00 0.00 0.00 2.32
2422 5077 5.236911 GTCACATGATTTTTGCCACATTTGT 59.763 36.000 0.00 0.00 0.00 2.83
2423 5078 5.466058 TCACATGATTTTTGCCACATTTGTC 59.534 36.000 0.00 0.00 0.00 3.18
2424 5079 5.467399 CACATGATTTTTGCCACATTTGTCT 59.533 36.000 0.00 0.00 0.00 3.41
2425 5080 6.017770 CACATGATTTTTGCCACATTTGTCTT 60.018 34.615 0.00 0.00 0.00 3.01
2426 5081 7.171167 CACATGATTTTTGCCACATTTGTCTTA 59.829 33.333 0.00 0.00 0.00 2.10
2427 5082 7.385752 ACATGATTTTTGCCACATTTGTCTTAG 59.614 33.333 0.00 0.00 0.00 2.18
2428 5083 6.815089 TGATTTTTGCCACATTTGTCTTAGT 58.185 32.000 0.00 0.00 0.00 2.24
2429 5084 7.271511 TGATTTTTGCCACATTTGTCTTAGTT 58.728 30.769 0.00 0.00 0.00 2.24
2430 5085 6.900568 TTTTTGCCACATTTGTCTTAGTTG 57.099 33.333 0.00 0.00 0.00 3.16
2431 5086 5.843673 TTTGCCACATTTGTCTTAGTTGA 57.156 34.783 0.00 0.00 0.00 3.18
2432 5087 5.437289 TTGCCACATTTGTCTTAGTTGAG 57.563 39.130 0.00 0.00 0.00 3.02
2433 5088 4.460263 TGCCACATTTGTCTTAGTTGAGT 58.540 39.130 0.00 0.00 0.00 3.41
2434 5089 4.887071 TGCCACATTTGTCTTAGTTGAGTT 59.113 37.500 0.00 0.00 0.00 3.01
2435 5090 5.215160 GCCACATTTGTCTTAGTTGAGTTG 58.785 41.667 0.00 0.00 0.00 3.16
2436 5091 5.215160 CCACATTTGTCTTAGTTGAGTTGC 58.785 41.667 0.00 0.00 0.00 4.17
2437 5092 5.009010 CCACATTTGTCTTAGTTGAGTTGCT 59.991 40.000 0.00 0.00 0.00 3.91
2438 5093 6.138761 CACATTTGTCTTAGTTGAGTTGCTC 58.861 40.000 0.00 0.00 0.00 4.26
2439 5094 5.822519 ACATTTGTCTTAGTTGAGTTGCTCA 59.177 36.000 0.00 0.00 38.87 4.26
2440 5095 6.488006 ACATTTGTCTTAGTTGAGTTGCTCAT 59.512 34.615 0.00 0.00 40.39 2.90
2441 5096 7.661437 ACATTTGTCTTAGTTGAGTTGCTCATA 59.339 33.333 0.00 0.00 40.39 2.15
2442 5097 8.671921 CATTTGTCTTAGTTGAGTTGCTCATAT 58.328 33.333 0.00 0.00 40.39 1.78
2443 5098 8.621532 TTTGTCTTAGTTGAGTTGCTCATATT 57.378 30.769 0.00 0.00 40.39 1.28
2444 5099 7.601073 TGTCTTAGTTGAGTTGCTCATATTG 57.399 36.000 0.00 0.00 40.39 1.90
2445 5100 7.161404 TGTCTTAGTTGAGTTGCTCATATTGT 58.839 34.615 0.00 0.00 40.39 2.71
2446 5101 7.661437 TGTCTTAGTTGAGTTGCTCATATTGTT 59.339 33.333 0.00 0.00 40.39 2.83
2447 5102 9.151471 GTCTTAGTTGAGTTGCTCATATTGTTA 57.849 33.333 0.00 0.00 40.39 2.41
2448 5103 9.371136 TCTTAGTTGAGTTGCTCATATTGTTAG 57.629 33.333 0.00 0.00 40.39 2.34
2449 5104 6.428385 AGTTGAGTTGCTCATATTGTTAGC 57.572 37.500 0.00 0.00 40.39 3.09
2450 5105 5.355350 AGTTGAGTTGCTCATATTGTTAGCC 59.645 40.000 0.00 0.00 40.39 3.93
2451 5106 4.842574 TGAGTTGCTCATATTGTTAGCCA 58.157 39.130 0.00 0.00 35.39 4.75
2452 5107 4.635765 TGAGTTGCTCATATTGTTAGCCAC 59.364 41.667 0.00 0.00 35.39 5.01
2453 5108 4.588899 AGTTGCTCATATTGTTAGCCACA 58.411 39.130 0.00 0.00 35.09 4.17
2454 5109 4.396166 AGTTGCTCATATTGTTAGCCACAC 59.604 41.667 0.00 0.00 35.09 3.82
2455 5110 4.220693 TGCTCATATTGTTAGCCACACT 57.779 40.909 0.00 0.00 33.98 3.55
2456 5111 4.588899 TGCTCATATTGTTAGCCACACTT 58.411 39.130 0.00 0.00 33.98 3.16
2457 5112 5.009631 TGCTCATATTGTTAGCCACACTTT 58.990 37.500 0.00 0.00 33.98 2.66
2458 5113 5.106197 TGCTCATATTGTTAGCCACACTTTG 60.106 40.000 0.00 0.00 33.98 2.77
2466 5121 3.860681 CCACACTTTGGCTTGCCT 58.139 55.556 13.18 0.00 39.07 4.75
2467 5122 3.034924 CCACACTTTGGCTTGCCTA 57.965 52.632 13.18 2.12 39.07 3.93
2468 5123 1.549203 CCACACTTTGGCTTGCCTAT 58.451 50.000 13.18 0.00 39.07 2.57
2469 5124 1.203052 CCACACTTTGGCTTGCCTATG 59.797 52.381 13.18 9.85 39.07 2.23
2470 5125 1.203052 CACACTTTGGCTTGCCTATGG 59.797 52.381 13.18 4.51 0.00 2.74
2471 5126 0.819582 CACTTTGGCTTGCCTATGGG 59.180 55.000 13.18 5.12 0.00 4.00
2472 5127 0.704076 ACTTTGGCTTGCCTATGGGA 59.296 50.000 13.18 0.00 33.58 4.37
2473 5128 1.077005 ACTTTGGCTTGCCTATGGGAA 59.923 47.619 13.18 0.00 33.58 3.97
2474 5129 2.292455 ACTTTGGCTTGCCTATGGGAAT 60.292 45.455 13.18 0.00 31.43 3.01
2475 5130 2.071778 TTGGCTTGCCTATGGGAATC 57.928 50.000 13.18 0.00 31.43 2.52
2476 5131 1.225373 TGGCTTGCCTATGGGAATCT 58.775 50.000 13.18 0.00 31.43 2.40
2477 5132 1.570501 TGGCTTGCCTATGGGAATCTT 59.429 47.619 13.18 0.00 31.43 2.40
2478 5133 1.959282 GGCTTGCCTATGGGAATCTTG 59.041 52.381 0.00 0.00 31.43 3.02
2479 5134 1.339291 GCTTGCCTATGGGAATCTTGC 59.661 52.381 0.00 0.00 31.43 4.01
2480 5135 1.959282 CTTGCCTATGGGAATCTTGCC 59.041 52.381 0.00 0.00 39.41 4.52
2487 5142 2.380064 TGGGAATCTTGCCACACTTT 57.620 45.000 0.00 0.00 44.22 2.66
2488 5143 2.676748 TGGGAATCTTGCCACACTTTT 58.323 42.857 0.00 0.00 44.22 2.27
2489 5144 3.037549 TGGGAATCTTGCCACACTTTTT 58.962 40.909 0.00 0.00 44.22 1.94
2490 5145 3.181467 TGGGAATCTTGCCACACTTTTTG 60.181 43.478 0.00 0.00 44.22 2.44
2491 5146 3.181466 GGGAATCTTGCCACACTTTTTGT 60.181 43.478 0.00 0.00 39.97 2.83
2507 5162 7.475015 CACTTTTTGTGTCTATGACATATGGG 58.525 38.462 7.80 0.00 44.63 4.00
2508 5163 6.603201 ACTTTTTGTGTCTATGACATATGGGG 59.397 38.462 7.80 0.00 44.63 4.96
2509 5164 5.708736 TTTGTGTCTATGACATATGGGGT 57.291 39.130 7.80 0.00 44.63 4.95
2510 5165 5.708736 TTGTGTCTATGACATATGGGGTT 57.291 39.130 7.80 0.00 44.63 4.11
2511 5166 5.290493 TGTGTCTATGACATATGGGGTTC 57.710 43.478 7.80 0.00 44.63 3.62
2512 5167 4.719273 TGTGTCTATGACATATGGGGTTCA 59.281 41.667 7.80 1.85 44.63 3.18
2513 5168 5.057149 GTGTCTATGACATATGGGGTTCAC 58.943 45.833 7.80 4.25 44.63 3.18
2514 5169 4.968719 TGTCTATGACATATGGGGTTCACT 59.031 41.667 7.80 0.00 37.67 3.41
2515 5170 5.163311 TGTCTATGACATATGGGGTTCACTG 60.163 44.000 7.80 0.00 37.67 3.66
2516 5171 2.418368 TGACATATGGGGTTCACTGC 57.582 50.000 7.80 0.00 0.00 4.40
2517 5172 1.915489 TGACATATGGGGTTCACTGCT 59.085 47.619 7.80 0.00 0.00 4.24
2518 5173 2.092968 TGACATATGGGGTTCACTGCTC 60.093 50.000 7.80 0.00 0.00 4.26
2519 5174 1.915489 ACATATGGGGTTCACTGCTCA 59.085 47.619 7.80 0.00 0.00 4.26
2520 5175 2.511218 ACATATGGGGTTCACTGCTCAT 59.489 45.455 7.80 0.00 0.00 2.90
2521 5176 3.716353 ACATATGGGGTTCACTGCTCATA 59.284 43.478 7.80 0.00 0.00 2.15
2522 5177 4.165950 ACATATGGGGTTCACTGCTCATAA 59.834 41.667 7.80 0.00 0.00 1.90
2523 5178 3.737559 ATGGGGTTCACTGCTCATAAA 57.262 42.857 0.00 0.00 0.00 1.40
2524 5179 3.517296 TGGGGTTCACTGCTCATAAAA 57.483 42.857 0.00 0.00 0.00 1.52
2525 5180 3.838565 TGGGGTTCACTGCTCATAAAAA 58.161 40.909 0.00 0.00 0.00 1.94
2546 5201 4.871933 AAAATTCTTGCCTTAGGTGTGG 57.128 40.909 0.00 0.00 0.00 4.17
2553 5208 2.171341 GCCTTAGGTGTGGCTATAGC 57.829 55.000 16.78 16.78 45.26 2.97
2566 5221 3.840124 GCTATAGCCAAACACCTACCT 57.160 47.619 14.13 0.00 34.31 3.08
2567 5222 4.950205 GCTATAGCCAAACACCTACCTA 57.050 45.455 14.13 0.00 34.31 3.08
2568 5223 5.286267 GCTATAGCCAAACACCTACCTAA 57.714 43.478 14.13 0.00 34.31 2.69
2569 5224 5.055144 GCTATAGCCAAACACCTACCTAAC 58.945 45.833 14.13 0.00 34.31 2.34
2570 5225 5.163332 GCTATAGCCAAACACCTACCTAACT 60.163 44.000 14.13 0.00 34.31 2.24
2571 5226 5.774102 ATAGCCAAACACCTACCTAACTT 57.226 39.130 0.00 0.00 0.00 2.66
2572 5227 3.751518 AGCCAAACACCTACCTAACTTG 58.248 45.455 0.00 0.00 0.00 3.16
2573 5228 2.817844 GCCAAACACCTACCTAACTTGG 59.182 50.000 0.00 0.00 35.90 3.61
2574 5229 3.749632 GCCAAACACCTACCTAACTTGGT 60.750 47.826 0.00 0.00 43.66 3.67
2575 5230 4.070009 CCAAACACCTACCTAACTTGGTC 58.930 47.826 0.00 0.00 41.22 4.02
2576 5231 4.445162 CCAAACACCTACCTAACTTGGTCA 60.445 45.833 0.00 0.00 41.22 4.02
2577 5232 5.127491 CAAACACCTACCTAACTTGGTCAA 58.873 41.667 0.00 0.00 41.22 3.18
2578 5233 5.376756 AACACCTACCTAACTTGGTCAAA 57.623 39.130 0.00 0.00 41.22 2.69
2579 5234 4.711399 ACACCTACCTAACTTGGTCAAAC 58.289 43.478 0.00 0.00 41.22 2.93
2580 5235 4.411212 ACACCTACCTAACTTGGTCAAACT 59.589 41.667 0.00 0.00 41.22 2.66
2581 5236 5.104235 ACACCTACCTAACTTGGTCAAACTT 60.104 40.000 0.00 0.00 41.22 2.66
2582 5237 5.238650 CACCTACCTAACTTGGTCAAACTTG 59.761 44.000 0.00 0.00 41.22 3.16
2583 5238 5.104235 ACCTACCTAACTTGGTCAAACTTGT 60.104 40.000 0.00 0.00 41.22 3.16
2584 5239 5.469084 CCTACCTAACTTGGTCAAACTTGTC 59.531 44.000 0.00 0.00 41.22 3.18
2585 5240 5.112129 ACCTAACTTGGTCAAACTTGTCT 57.888 39.130 0.00 0.00 34.86 3.41
2586 5241 6.243216 ACCTAACTTGGTCAAACTTGTCTA 57.757 37.500 0.00 0.00 34.86 2.59
2587 5242 6.655930 ACCTAACTTGGTCAAACTTGTCTAA 58.344 36.000 0.00 0.00 34.86 2.10
2588 5243 6.766467 ACCTAACTTGGTCAAACTTGTCTAAG 59.234 38.462 9.90 9.90 39.39 2.18
2589 5244 6.204882 CCTAACTTGGTCAAACTTGTCTAAGG 59.795 42.308 14.00 0.00 38.43 2.69
2590 5245 5.112129 ACTTGGTCAAACTTGTCTAAGGT 57.888 39.130 14.00 0.00 38.43 3.50
2591 5246 5.506708 ACTTGGTCAAACTTGTCTAAGGTT 58.493 37.500 14.00 0.00 44.49 3.50
2592 5247 6.655930 ACTTGGTCAAACTTGTCTAAGGTTA 58.344 36.000 14.00 0.00 41.80 2.85
2593 5248 6.766467 ACTTGGTCAAACTTGTCTAAGGTTAG 59.234 38.462 14.00 0.00 41.80 2.34
2594 5249 5.617252 TGGTCAAACTTGTCTAAGGTTAGG 58.383 41.667 0.00 0.00 41.80 2.69
2595 5250 4.454847 GGTCAAACTTGTCTAAGGTTAGGC 59.545 45.833 0.00 0.00 41.80 3.93
2596 5251 4.151867 GTCAAACTTGTCTAAGGTTAGGCG 59.848 45.833 0.00 0.00 41.80 5.52
2597 5252 4.062991 CAAACTTGTCTAAGGTTAGGCGT 58.937 43.478 0.00 0.00 41.80 5.68
2598 5253 3.314541 ACTTGTCTAAGGTTAGGCGTG 57.685 47.619 0.00 0.00 38.19 5.34
2599 5254 2.028385 ACTTGTCTAAGGTTAGGCGTGG 60.028 50.000 0.00 0.00 38.19 4.94
2600 5255 0.248289 TGTCTAAGGTTAGGCGTGGC 59.752 55.000 0.00 0.00 38.19 5.01
2601 5256 0.248289 GTCTAAGGTTAGGCGTGGCA 59.752 55.000 0.00 0.00 0.00 4.92
2602 5257 0.978151 TCTAAGGTTAGGCGTGGCAA 59.022 50.000 0.00 0.00 0.00 4.52
2603 5258 1.348366 TCTAAGGTTAGGCGTGGCAAA 59.652 47.619 0.00 0.00 0.00 3.68
2604 5259 1.737793 CTAAGGTTAGGCGTGGCAAAG 59.262 52.381 0.00 0.00 0.00 2.77
2605 5260 0.179001 AAGGTTAGGCGTGGCAAAGT 60.179 50.000 0.00 0.00 0.00 2.66
2606 5261 0.889186 AGGTTAGGCGTGGCAAAGTG 60.889 55.000 0.00 0.00 0.00 3.16
2607 5262 1.170290 GGTTAGGCGTGGCAAAGTGT 61.170 55.000 0.00 0.00 0.00 3.55
2608 5263 0.040425 GTTAGGCGTGGCAAAGTGTG 60.040 55.000 0.00 0.00 0.00 3.82
2609 5264 1.169661 TTAGGCGTGGCAAAGTGTGG 61.170 55.000 0.00 0.00 0.00 4.17
2616 5271 4.736165 GCAAAGTGTGGCAAGGTG 57.264 55.556 0.00 0.00 0.00 4.00
2617 5272 1.815866 GCAAAGTGTGGCAAGGTGT 59.184 52.632 0.00 0.00 0.00 4.16
2618 5273 0.528249 GCAAAGTGTGGCAAGGTGTG 60.528 55.000 0.00 0.00 0.00 3.82
2619 5274 0.817013 CAAAGTGTGGCAAGGTGTGT 59.183 50.000 0.00 0.00 0.00 3.72
2620 5275 1.102978 AAAGTGTGGCAAGGTGTGTC 58.897 50.000 0.00 0.00 0.00 3.67
2621 5276 0.255890 AAGTGTGGCAAGGTGTGTCT 59.744 50.000 0.00 0.00 30.97 3.41
2622 5277 0.464373 AGTGTGGCAAGGTGTGTCTG 60.464 55.000 0.00 0.00 30.97 3.51
2623 5278 1.152984 TGTGGCAAGGTGTGTCTGG 60.153 57.895 0.00 0.00 30.97 3.86
2624 5279 1.898574 GTGGCAAGGTGTGTCTGGG 60.899 63.158 0.00 0.00 30.97 4.45
2625 5280 2.075566 TGGCAAGGTGTGTCTGGGA 61.076 57.895 0.00 0.00 30.97 4.37
2626 5281 1.150536 GGCAAGGTGTGTCTGGGAA 59.849 57.895 0.00 0.00 0.00 3.97
2627 5282 1.172812 GGCAAGGTGTGTCTGGGAAC 61.173 60.000 0.00 0.00 0.00 3.62
2649 5304 4.140782 ACCAAACAACCCCTTAATCTTCCT 60.141 41.667 0.00 0.00 0.00 3.36
2667 5322 6.197168 TCTTCCTAAATTGCCCTCAAATCAT 58.803 36.000 0.00 0.00 35.56 2.45
2668 5323 6.669154 TCTTCCTAAATTGCCCTCAAATCATT 59.331 34.615 0.00 0.00 35.56 2.57
2669 5324 6.224665 TCCTAAATTGCCCTCAAATCATTG 57.775 37.500 0.00 0.00 35.56 2.82
2671 5326 6.440010 TCCTAAATTGCCCTCAAATCATTGAA 59.560 34.615 0.00 0.00 44.64 2.69
2673 5328 7.771826 CCTAAATTGCCCTCAAATCATTGAAAT 59.228 33.333 0.00 0.00 44.64 2.17
2675 5330 5.741962 TTGCCCTCAAATCATTGAAATCA 57.258 34.783 0.00 0.00 44.64 2.57
2678 5333 5.951148 TGCCCTCAAATCATTGAAATCACTA 59.049 36.000 0.00 0.00 44.64 2.74
2680 5335 7.124599 TGCCCTCAAATCATTGAAATCACTAAT 59.875 33.333 0.00 0.00 44.64 1.73
2681 5336 7.983484 GCCCTCAAATCATTGAAATCACTAATT 59.017 33.333 0.00 0.00 44.64 1.40
2682 5337 9.309516 CCCTCAAATCATTGAAATCACTAATTG 57.690 33.333 0.00 0.00 44.64 2.32
2688 5343 9.471702 AATCATTGAAATCACTAATTGAGGAGT 57.528 29.630 0.00 0.00 37.77 3.85
2690 5345 9.383519 TCATTGAAATCACTAATTGAGGAGTAC 57.616 33.333 0.00 0.00 37.77 2.73
2691 5346 9.388506 CATTGAAATCACTAATTGAGGAGTACT 57.611 33.333 0.00 0.00 37.77 2.73
2692 5347 9.606631 ATTGAAATCACTAATTGAGGAGTACTC 57.393 33.333 14.87 14.87 46.78 2.59
2704 5359 5.982465 GAGGAGTACTCATTGCAAAGATC 57.018 43.478 23.91 0.00 45.85 2.75
2708 5363 5.293079 GGAGTACTCATTGCAAAGATCACTC 59.707 44.000 23.91 23.94 0.00 3.51
2709 5364 5.181748 AGTACTCATTGCAAAGATCACTCC 58.818 41.667 1.71 0.00 0.00 3.85
2711 5366 3.245016 ACTCATTGCAAAGATCACTCCCA 60.245 43.478 1.71 0.00 0.00 4.37
2712 5367 3.084039 TCATTGCAAAGATCACTCCCAC 58.916 45.455 1.71 0.00 0.00 4.61
2714 5369 2.885135 TGCAAAGATCACTCCCACAT 57.115 45.000 0.00 0.00 0.00 3.21
2715 5370 3.159213 TGCAAAGATCACTCCCACATT 57.841 42.857 0.00 0.00 0.00 2.71
2716 5371 3.499338 TGCAAAGATCACTCCCACATTT 58.501 40.909 0.00 0.00 0.00 2.32
2717 5372 3.507233 TGCAAAGATCACTCCCACATTTC 59.493 43.478 0.00 0.00 0.00 2.17
2718 5373 3.119352 GCAAAGATCACTCCCACATTTCC 60.119 47.826 0.00 0.00 0.00 3.13
2719 5374 4.081406 CAAAGATCACTCCCACATTTCCA 58.919 43.478 0.00 0.00 0.00 3.53
2720 5375 3.641434 AGATCACTCCCACATTTCCAG 57.359 47.619 0.00 0.00 0.00 3.86
2721 5376 3.184628 AGATCACTCCCACATTTCCAGA 58.815 45.455 0.00 0.00 0.00 3.86
2722 5377 3.784763 AGATCACTCCCACATTTCCAGAT 59.215 43.478 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.768381 GCCAATAGGTTACTAATCAGAAAGCT 59.232 38.462 0.00 0.00 37.19 3.74
1 2 6.768381 AGCCAATAGGTTACTAATCAGAAAGC 59.232 38.462 0.00 0.00 37.19 3.51
2 3 7.987458 TCAGCCAATAGGTTACTAATCAGAAAG 59.013 37.037 0.00 0.00 37.19 2.62
3 4 7.769044 GTCAGCCAATAGGTTACTAATCAGAAA 59.231 37.037 0.00 0.00 37.19 2.52
4 5 7.125811 AGTCAGCCAATAGGTTACTAATCAGAA 59.874 37.037 0.00 0.00 37.19 3.02
5 6 6.611642 AGTCAGCCAATAGGTTACTAATCAGA 59.388 38.462 0.00 0.00 37.19 3.27
6 7 6.703607 CAGTCAGCCAATAGGTTACTAATCAG 59.296 42.308 0.00 0.00 37.19 2.90
7 8 6.156256 ACAGTCAGCCAATAGGTTACTAATCA 59.844 38.462 0.00 0.00 37.19 2.57
8 9 6.583562 ACAGTCAGCCAATAGGTTACTAATC 58.416 40.000 0.00 0.00 37.19 1.75
9 10 6.561519 ACAGTCAGCCAATAGGTTACTAAT 57.438 37.500 0.00 0.00 37.19 1.73
10 11 6.014070 TGAACAGTCAGCCAATAGGTTACTAA 60.014 38.462 0.00 0.00 37.19 2.24
11 12 5.482526 TGAACAGTCAGCCAATAGGTTACTA 59.517 40.000 0.00 0.00 37.19 1.82
12 13 4.286032 TGAACAGTCAGCCAATAGGTTACT 59.714 41.667 0.00 0.00 37.19 2.24
13 14 4.575885 TGAACAGTCAGCCAATAGGTTAC 58.424 43.478 0.00 0.00 37.19 2.50
14 15 4.901197 TGAACAGTCAGCCAATAGGTTA 57.099 40.909 0.00 0.00 37.19 2.85
15 16 3.788227 TGAACAGTCAGCCAATAGGTT 57.212 42.857 0.00 0.00 37.19 3.50
16 17 3.412386 GTTGAACAGTCAGCCAATAGGT 58.588 45.455 0.00 0.00 34.49 3.08
17 18 2.416547 CGTTGAACAGTCAGCCAATAGG 59.583 50.000 0.00 0.00 34.49 2.57
18 19 3.325870 TCGTTGAACAGTCAGCCAATAG 58.674 45.455 0.00 0.00 34.49 1.73
19 20 3.394674 TCGTTGAACAGTCAGCCAATA 57.605 42.857 0.00 0.00 34.49 1.90
20 21 2.254546 TCGTTGAACAGTCAGCCAAT 57.745 45.000 0.00 0.00 34.49 3.16
21 22 1.668751 GTTCGTTGAACAGTCAGCCAA 59.331 47.619 4.87 0.00 41.62 4.52
22 23 1.295792 GTTCGTTGAACAGTCAGCCA 58.704 50.000 4.87 0.00 41.62 4.75
23 24 0.232303 CGTTCGTTGAACAGTCAGCC 59.768 55.000 10.01 0.00 42.05 4.85
24 25 0.383124 GCGTTCGTTGAACAGTCAGC 60.383 55.000 10.01 1.51 42.05 4.26
25 26 0.232303 GGCGTTCGTTGAACAGTCAG 59.768 55.000 10.01 0.00 42.05 3.51
26 27 0.179094 AGGCGTTCGTTGAACAGTCA 60.179 50.000 10.01 0.00 42.05 3.41
27 28 0.935196 AAGGCGTTCGTTGAACAGTC 59.065 50.000 10.01 4.72 42.05 3.51
28 29 0.935196 GAAGGCGTTCGTTGAACAGT 59.065 50.000 2.98 0.00 42.05 3.55
29 30 1.217882 AGAAGGCGTTCGTTGAACAG 58.782 50.000 13.11 4.39 42.05 3.16
30 31 1.658994 AAGAAGGCGTTCGTTGAACA 58.341 45.000 13.11 0.00 42.05 3.18
31 32 2.750301 AAAGAAGGCGTTCGTTGAAC 57.250 45.000 17.46 0.00 38.97 3.18
32 33 2.678836 TCAAAAGAAGGCGTTCGTTGAA 59.321 40.909 25.65 14.41 38.03 2.69
33 34 2.281517 TCAAAAGAAGGCGTTCGTTGA 58.718 42.857 24.79 24.79 38.35 3.18
34 35 2.748461 TCAAAAGAAGGCGTTCGTTG 57.252 45.000 18.59 20.70 34.96 4.10
35 36 3.982576 ATTCAAAAGAAGGCGTTCGTT 57.017 38.095 13.42 13.42 37.79 3.85
36 37 5.427036 TTTATTCAAAAGAAGGCGTTCGT 57.573 34.783 13.11 7.62 37.79 3.85
37 38 4.320953 GCTTTATTCAAAAGAAGGCGTTCG 59.679 41.667 13.11 0.00 37.79 3.95
38 39 5.461526 AGCTTTATTCAAAAGAAGGCGTTC 58.538 37.500 11.17 11.17 0.00 3.95
39 40 5.453567 AGCTTTATTCAAAAGAAGGCGTT 57.546 34.783 1.78 0.00 0.00 4.84
40 41 5.453567 AAGCTTTATTCAAAAGAAGGCGT 57.546 34.783 0.00 0.00 0.00 5.68
41 42 7.867445 TTAAAGCTTTATTCAAAAGAAGGCG 57.133 32.000 19.27 0.00 0.00 5.52
78 79 7.112452 AGCCAAAATGTACAAGAGTCTTTTT 57.888 32.000 1.56 0.00 0.00 1.94
79 80 6.321181 TGAGCCAAAATGTACAAGAGTCTTTT 59.679 34.615 1.56 0.00 0.00 2.27
80 81 5.827797 TGAGCCAAAATGTACAAGAGTCTTT 59.172 36.000 1.56 0.00 0.00 2.52
81 82 5.376625 TGAGCCAAAATGTACAAGAGTCTT 58.623 37.500 0.00 0.00 0.00 3.01
82 83 4.973168 TGAGCCAAAATGTACAAGAGTCT 58.027 39.130 0.00 0.00 0.00 3.24
83 84 4.378874 GCTGAGCCAAAATGTACAAGAGTC 60.379 45.833 0.00 0.00 0.00 3.36
84 85 3.503748 GCTGAGCCAAAATGTACAAGAGT 59.496 43.478 0.00 0.00 0.00 3.24
85 86 3.503363 TGCTGAGCCAAAATGTACAAGAG 59.497 43.478 0.23 0.00 0.00 2.85
86 87 3.485394 TGCTGAGCCAAAATGTACAAGA 58.515 40.909 0.23 0.00 0.00 3.02
87 88 3.921119 TGCTGAGCCAAAATGTACAAG 57.079 42.857 0.23 0.00 0.00 3.16
88 89 4.662468 TTTGCTGAGCCAAAATGTACAA 57.338 36.364 0.23 0.00 32.20 2.41
89 90 4.870123 ATTTGCTGAGCCAAAATGTACA 57.130 36.364 0.23 0.00 38.12 2.90
90 91 5.125417 TCCTATTTGCTGAGCCAAAATGTAC 59.875 40.000 11.60 0.00 38.12 2.90
91 92 5.260424 TCCTATTTGCTGAGCCAAAATGTA 58.740 37.500 11.60 0.00 38.12 2.29
92 93 4.088634 TCCTATTTGCTGAGCCAAAATGT 58.911 39.130 11.60 0.00 38.12 2.71
93 94 4.724074 TCCTATTTGCTGAGCCAAAATG 57.276 40.909 11.60 5.85 38.12 2.32
94 95 7.256083 GGAATATCCTATTTGCTGAGCCAAAAT 60.256 37.037 0.23 4.96 34.56 1.82
95 96 6.040842 GGAATATCCTATTTGCTGAGCCAAAA 59.959 38.462 0.23 0.00 34.56 2.44
96 97 5.536161 GGAATATCCTATTTGCTGAGCCAAA 59.464 40.000 0.23 3.20 34.99 3.28
97 98 5.072741 GGAATATCCTATTTGCTGAGCCAA 58.927 41.667 0.23 0.00 32.53 4.52
98 99 4.655963 GGAATATCCTATTTGCTGAGCCA 58.344 43.478 0.23 0.00 32.53 4.75
111 112 7.364144 GAAAGGCACATTTCAAAGGAATATCCT 60.364 37.037 3.10 0.00 42.39 3.24
112 113 5.859205 AGGCACATTTCAAAGGAATATCC 57.141 39.130 0.00 0.00 36.58 2.59
113 114 6.758416 GGAAAGGCACATTTCAAAGGAATATC 59.242 38.462 9.66 0.00 40.29 1.63
114 115 6.213195 TGGAAAGGCACATTTCAAAGGAATAT 59.787 34.615 9.66 0.00 40.29 1.28
115 116 5.541868 TGGAAAGGCACATTTCAAAGGAATA 59.458 36.000 9.66 0.00 40.29 1.75
116 117 4.347583 TGGAAAGGCACATTTCAAAGGAAT 59.652 37.500 9.66 0.00 40.29 3.01
117 118 3.708631 TGGAAAGGCACATTTCAAAGGAA 59.291 39.130 9.66 0.00 40.29 3.36
118 119 3.303938 TGGAAAGGCACATTTCAAAGGA 58.696 40.909 9.66 0.00 40.29 3.36
119 120 3.749665 TGGAAAGGCACATTTCAAAGG 57.250 42.857 9.66 0.00 40.29 3.11
120 121 3.998341 CCATGGAAAGGCACATTTCAAAG 59.002 43.478 5.56 0.00 40.29 2.77
121 122 3.244491 CCCATGGAAAGGCACATTTCAAA 60.244 43.478 15.22 0.00 40.29 2.69
122 123 2.302445 CCCATGGAAAGGCACATTTCAA 59.698 45.455 15.22 0.00 40.29 2.69
123 124 1.901159 CCCATGGAAAGGCACATTTCA 59.099 47.619 15.22 0.00 40.29 2.69
124 125 2.167075 CTCCCATGGAAAGGCACATTTC 59.833 50.000 15.22 0.00 38.26 2.17
125 126 2.181975 CTCCCATGGAAAGGCACATTT 58.818 47.619 15.22 0.00 0.00 2.32
126 127 1.856629 CTCCCATGGAAAGGCACATT 58.143 50.000 15.22 0.00 0.00 2.71
127 128 0.685458 GCTCCCATGGAAAGGCACAT 60.685 55.000 15.22 0.00 0.00 3.21
128 129 1.304381 GCTCCCATGGAAAGGCACA 60.304 57.895 15.22 0.00 0.00 4.57
129 130 2.409870 CGCTCCCATGGAAAGGCAC 61.410 63.158 15.22 0.00 0.00 5.01
130 131 2.045045 CGCTCCCATGGAAAGGCA 60.045 61.111 15.22 0.00 0.00 4.75
131 132 2.115291 GTCGCTCCCATGGAAAGGC 61.115 63.158 15.22 10.44 0.00 4.35
132 133 0.830648 TAGTCGCTCCCATGGAAAGG 59.169 55.000 15.22 4.99 0.00 3.11
133 134 2.158900 ACATAGTCGCTCCCATGGAAAG 60.159 50.000 15.22 11.54 0.00 2.62
134 135 1.837439 ACATAGTCGCTCCCATGGAAA 59.163 47.619 15.22 0.00 0.00 3.13
135 136 1.496060 ACATAGTCGCTCCCATGGAA 58.504 50.000 15.22 0.00 0.00 3.53
136 137 1.961394 GTACATAGTCGCTCCCATGGA 59.039 52.381 15.22 0.00 0.00 3.41
137 138 1.000955 GGTACATAGTCGCTCCCATGG 59.999 57.143 4.14 4.14 0.00 3.66
138 139 1.335964 CGGTACATAGTCGCTCCCATG 60.336 57.143 0.00 0.00 0.00 3.66
139 140 0.959553 CGGTACATAGTCGCTCCCAT 59.040 55.000 0.00 0.00 0.00 4.00
140 141 0.394762 ACGGTACATAGTCGCTCCCA 60.395 55.000 0.00 0.00 0.00 4.37
141 142 0.310232 GACGGTACATAGTCGCTCCC 59.690 60.000 0.00 0.00 0.00 4.30
142 143 0.041488 CGACGGTACATAGTCGCTCC 60.041 60.000 19.40 0.00 0.00 4.70
143 144 0.041488 CCGACGGTACATAGTCGCTC 60.041 60.000 23.35 6.61 0.00 5.03
144 145 1.442526 CCCGACGGTACATAGTCGCT 61.443 60.000 23.35 0.00 0.00 4.93
145 146 1.009222 CCCGACGGTACATAGTCGC 60.009 63.158 23.35 3.65 0.00 5.19
146 147 1.196354 GATCCCGACGGTACATAGTCG 59.804 57.143 22.41 22.41 0.00 4.18
156 157 0.602905 GCCAAATAGGATCCCGACGG 60.603 60.000 8.55 6.99 41.22 4.79
157 158 0.944311 CGCCAAATAGGATCCCGACG 60.944 60.000 8.55 0.00 41.22 5.12
160 161 1.966451 GGCGCCAAATAGGATCCCG 60.966 63.158 24.80 3.87 41.22 5.14
178 179 2.415090 CCGTACTTAACCAGTGAGTCGG 60.415 54.545 0.00 0.00 35.97 4.79
180 181 2.603953 GCCGTACTTAACCAGTGAGTC 58.396 52.381 0.00 0.00 35.97 3.36
189 190 2.374226 TGTGCGCGCCGTACTTAAC 61.374 57.895 30.77 17.75 42.49 2.01
215 216 6.149474 GGCTGGCCTATAATTGTATGTGTAAG 59.851 42.308 3.32 0.00 0.00 2.34
219 220 3.758554 GGGCTGGCCTATAATTGTATGTG 59.241 47.826 13.80 0.00 36.10 3.21
220 221 3.397618 TGGGCTGGCCTATAATTGTATGT 59.602 43.478 21.72 0.00 36.10 2.29
249 250 4.532126 GGAACCTTCCAAATCTGGGAAAAT 59.468 41.667 0.00 0.00 46.76 1.82
423 438 8.668353 TCAAGATTACATAAGAATGTTCACAGC 58.332 33.333 0.00 0.00 44.07 4.40
523 538 7.302524 ACTCGCGTATTTGAAATTGTTAACAT 58.697 30.769 9.56 0.00 0.00 2.71
544 559 6.578545 CCAGAAAATGTTCACACAAATACTCG 59.421 38.462 0.00 0.00 36.16 4.18
553 568 5.830912 TGTTGATCCAGAAAATGTTCACAC 58.169 37.500 0.00 0.00 36.09 3.82
637 667 2.159667 TCGCTCATTCACAAAATGCTCG 60.160 45.455 0.00 0.00 0.00 5.03
640 670 3.307674 TGTTCGCTCATTCACAAAATGC 58.692 40.909 0.00 0.00 0.00 3.56
711 741 3.112075 CGCGTGCGTGATCTTGGT 61.112 61.111 6.00 0.00 34.35 3.67
715 745 4.121669 AGCTCGCGTGCGTGATCT 62.122 61.111 25.34 10.29 40.74 2.75
771 801 6.042437 GGGGAAGACTAATTAATTACTCCCGA 59.958 42.308 20.77 1.26 33.59 5.14
776 806 5.131475 TGGCGGGGAAGACTAATTAATTACT 59.869 40.000 3.71 0.00 0.00 2.24
818 859 0.796927 GAAGCGTGGGAACTAAGCAC 59.203 55.000 0.00 0.00 0.00 4.40
951 1024 1.824329 GCGGAGGAGGAGTCGATCA 60.824 63.158 0.00 0.00 0.00 2.92
1448 1707 1.273048 TGGTTGGCATGTTCTTGATGC 59.727 47.619 0.00 0.00 44.65 3.91
1480 1748 2.022902 GATCGACGAAGAGCGCGA 59.977 61.111 12.10 0.00 46.38 5.87
1498 1766 0.329596 GTCATGCCCTTCTTCACCCT 59.670 55.000 0.00 0.00 0.00 4.34
1737 2716 5.474532 TCAGCTTTGTACTCCTCGTAGTTTA 59.525 40.000 0.00 0.00 0.00 2.01
1738 2717 4.280174 TCAGCTTTGTACTCCTCGTAGTTT 59.720 41.667 0.00 0.00 0.00 2.66
1785 2781 0.100682 CAGATGCAGCACCTTCATGC 59.899 55.000 4.07 0.00 46.50 4.06
1786 2782 0.100682 GCAGATGCAGCACCTTCATG 59.899 55.000 4.07 0.00 41.59 3.07
1787 2783 2.490165 GCAGATGCAGCACCTTCAT 58.510 52.632 4.07 0.00 41.59 2.57
1788 2784 3.991999 GCAGATGCAGCACCTTCA 58.008 55.556 4.07 0.00 41.59 3.02
2023 3041 6.321690 GGCAGAGAAGAGGTAGTAAATGAGTA 59.678 42.308 0.00 0.00 0.00 2.59
2046 3064 8.825667 TGTTTTTCCAGTTCTTATATTTTGGC 57.174 30.769 0.00 0.00 0.00 4.52
2060 3078 7.259161 TGCGTAAATAAAGTTGTTTTTCCAGT 58.741 30.769 0.00 0.00 0.00 4.00
2061 3079 7.687005 TGCGTAAATAAAGTTGTTTTTCCAG 57.313 32.000 0.00 0.00 0.00 3.86
2063 3081 9.401873 AGTATGCGTAAATAAAGTTGTTTTTCC 57.598 29.630 0.00 0.00 0.00 3.13
2066 3084 8.696175 GCAAGTATGCGTAAATAAAGTTGTTTT 58.304 29.630 0.00 0.00 43.83 2.43
2067 3085 8.222984 GCAAGTATGCGTAAATAAAGTTGTTT 57.777 30.769 0.00 0.00 43.83 2.83
2068 3086 7.790861 GCAAGTATGCGTAAATAAAGTTGTT 57.209 32.000 0.00 0.00 43.83 2.83
2084 3102 0.610785 AAACCCCACCGGCAAGTATG 60.611 55.000 0.00 0.00 33.26 2.39
2085 3103 0.323087 GAAACCCCACCGGCAAGTAT 60.323 55.000 0.00 0.00 33.26 2.12
2086 3104 1.073548 GAAACCCCACCGGCAAGTA 59.926 57.895 0.00 0.00 33.26 2.24
2087 3105 2.203437 GAAACCCCACCGGCAAGT 60.203 61.111 0.00 0.00 33.26 3.16
2088 3106 2.989253 GGAAACCCCACCGGCAAG 60.989 66.667 0.00 0.00 33.26 4.01
2089 3107 3.822035 TGGAAACCCCACCGGCAA 61.822 61.111 0.00 0.00 40.82 4.52
2099 3117 0.696501 TCTGCCTTAGGGTGGAAACC 59.303 55.000 0.00 0.00 34.45 3.27
2100 3118 1.628846 TCTCTGCCTTAGGGTGGAAAC 59.371 52.381 0.00 0.00 34.45 2.78
2101 3119 2.038863 TCTCTGCCTTAGGGTGGAAA 57.961 50.000 0.00 0.00 34.45 3.13
2102 3120 2.038863 TTCTCTGCCTTAGGGTGGAA 57.961 50.000 0.00 0.00 34.45 3.53
2103 3121 1.839994 CATTCTCTGCCTTAGGGTGGA 59.160 52.381 0.00 0.00 34.45 4.02
2104 3122 1.748591 GCATTCTCTGCCTTAGGGTGG 60.749 57.143 0.00 0.00 45.66 4.61
2105 3123 1.673168 GCATTCTCTGCCTTAGGGTG 58.327 55.000 0.00 0.00 45.66 4.61
2132 3150 3.051081 AGGACAAGTTGAGCAGCTAAG 57.949 47.619 10.54 0.00 0.00 2.18
2147 3165 8.595362 TCATTCTCTACAATCTCTTTAGGACA 57.405 34.615 0.00 0.00 0.00 4.02
2270 3288 2.960819 GTCACGAGGACAGCTAAATGT 58.039 47.619 7.03 0.00 46.19 2.71
2301 4947 0.684535 TTCTCATTCACCCGTGCTCA 59.315 50.000 0.00 0.00 0.00 4.26
2311 4957 2.239654 GAGACCCACCCATTCTCATTCA 59.760 50.000 0.00 0.00 36.55 2.57
2312 4958 2.422093 GGAGACCCACCCATTCTCATTC 60.422 54.545 0.00 0.00 38.02 2.67
2315 4961 0.119155 AGGAGACCCACCCATTCTCA 59.881 55.000 0.00 0.00 38.02 3.27
2331 4986 3.833645 CGTCGGGCGGATTGAGGA 61.834 66.667 0.00 0.00 36.85 3.71
2342 4997 1.933853 CCTAATTTTCAGCTCGTCGGG 59.066 52.381 0.00 0.00 0.00 5.14
2345 5000 1.671328 GCCCCTAATTTTCAGCTCGTC 59.329 52.381 0.00 0.00 0.00 4.20
2347 5002 1.672881 CAGCCCCTAATTTTCAGCTCG 59.327 52.381 0.00 0.00 0.00 5.03
2349 5004 2.907458 ACAGCCCCTAATTTTCAGCT 57.093 45.000 0.00 0.00 0.00 4.24
2358 5013 2.109128 TCACAATCCAAACAGCCCCTAA 59.891 45.455 0.00 0.00 0.00 2.69
2359 5014 1.707989 TCACAATCCAAACAGCCCCTA 59.292 47.619 0.00 0.00 0.00 3.53
2360 5015 0.482446 TCACAATCCAAACAGCCCCT 59.518 50.000 0.00 0.00 0.00 4.79
2361 5016 0.603065 GTCACAATCCAAACAGCCCC 59.397 55.000 0.00 0.00 0.00 5.80
2362 5017 1.620822 AGTCACAATCCAAACAGCCC 58.379 50.000 0.00 0.00 0.00 5.19
2363 5018 3.319122 AGAAAGTCACAATCCAAACAGCC 59.681 43.478 0.00 0.00 0.00 4.85
2364 5019 4.574599 AGAAAGTCACAATCCAAACAGC 57.425 40.909 0.00 0.00 0.00 4.40
2365 5020 6.332630 ACAAAGAAAGTCACAATCCAAACAG 58.667 36.000 0.00 0.00 0.00 3.16
2366 5021 6.279513 ACAAAGAAAGTCACAATCCAAACA 57.720 33.333 0.00 0.00 0.00 2.83
2367 5022 8.871686 ATAACAAAGAAAGTCACAATCCAAAC 57.128 30.769 0.00 0.00 0.00 2.93
2390 5045 9.964303 GTGGCAAAAATCATGTGACAATATATA 57.036 29.630 0.00 0.00 30.44 0.86
2391 5046 8.476447 TGTGGCAAAAATCATGTGACAATATAT 58.524 29.630 0.00 0.00 30.44 0.86
2392 5047 7.834803 TGTGGCAAAAATCATGTGACAATATA 58.165 30.769 0.00 0.00 30.44 0.86
2393 5048 6.699366 TGTGGCAAAAATCATGTGACAATAT 58.301 32.000 0.00 0.00 30.44 1.28
2394 5049 6.094193 TGTGGCAAAAATCATGTGACAATA 57.906 33.333 0.00 0.00 30.44 1.90
2395 5050 4.958509 TGTGGCAAAAATCATGTGACAAT 58.041 34.783 0.00 0.00 30.44 2.71
2396 5051 4.397481 TGTGGCAAAAATCATGTGACAA 57.603 36.364 0.00 0.00 30.44 3.18
2397 5052 4.603989 ATGTGGCAAAAATCATGTGACA 57.396 36.364 0.00 0.00 0.00 3.58
2398 5053 5.236911 ACAAATGTGGCAAAAATCATGTGAC 59.763 36.000 11.04 0.00 32.04 3.67
2399 5054 5.366460 ACAAATGTGGCAAAAATCATGTGA 58.634 33.333 11.04 0.00 32.04 3.58
2400 5055 5.467399 AGACAAATGTGGCAAAAATCATGTG 59.533 36.000 0.00 4.21 33.83 3.21
2401 5056 5.613329 AGACAAATGTGGCAAAAATCATGT 58.387 33.333 0.00 0.00 33.83 3.21
2402 5057 6.548441 AAGACAAATGTGGCAAAAATCATG 57.452 33.333 0.00 0.00 33.83 3.07
2403 5058 7.444299 ACTAAGACAAATGTGGCAAAAATCAT 58.556 30.769 0.00 0.00 33.83 2.45
2404 5059 6.815089 ACTAAGACAAATGTGGCAAAAATCA 58.185 32.000 0.00 0.00 33.83 2.57
2405 5060 7.437862 TCAACTAAGACAAATGTGGCAAAAATC 59.562 33.333 0.00 0.00 33.83 2.17
2406 5061 7.271511 TCAACTAAGACAAATGTGGCAAAAAT 58.728 30.769 0.00 0.00 33.83 1.82
2407 5062 6.634805 TCAACTAAGACAAATGTGGCAAAAA 58.365 32.000 0.00 0.00 33.83 1.94
2408 5063 6.127479 ACTCAACTAAGACAAATGTGGCAAAA 60.127 34.615 0.00 0.00 33.83 2.44
2409 5064 5.359576 ACTCAACTAAGACAAATGTGGCAAA 59.640 36.000 0.00 0.00 33.83 3.68
2410 5065 4.887071 ACTCAACTAAGACAAATGTGGCAA 59.113 37.500 0.00 0.00 33.83 4.52
2411 5066 4.460263 ACTCAACTAAGACAAATGTGGCA 58.540 39.130 0.00 0.00 33.83 4.92
2412 5067 5.215160 CAACTCAACTAAGACAAATGTGGC 58.785 41.667 0.00 0.00 0.00 5.01
2413 5068 5.009010 AGCAACTCAACTAAGACAAATGTGG 59.991 40.000 0.00 0.00 0.00 4.17
2414 5069 6.064846 AGCAACTCAACTAAGACAAATGTG 57.935 37.500 0.00 0.00 0.00 3.21
2415 5070 5.822519 TGAGCAACTCAACTAAGACAAATGT 59.177 36.000 0.00 0.00 37.57 2.71
2416 5071 6.304356 TGAGCAACTCAACTAAGACAAATG 57.696 37.500 0.00 0.00 37.57 2.32
2417 5072 8.798859 ATATGAGCAACTCAACTAAGACAAAT 57.201 30.769 0.74 0.00 44.04 2.32
2418 5073 8.506437 CAATATGAGCAACTCAACTAAGACAAA 58.494 33.333 0.74 0.00 44.04 2.83
2419 5074 7.661437 ACAATATGAGCAACTCAACTAAGACAA 59.339 33.333 0.74 0.00 44.04 3.18
2420 5075 7.161404 ACAATATGAGCAACTCAACTAAGACA 58.839 34.615 0.74 0.00 44.04 3.41
2421 5076 7.602517 ACAATATGAGCAACTCAACTAAGAC 57.397 36.000 0.74 0.00 44.04 3.01
2422 5077 9.371136 CTAACAATATGAGCAACTCAACTAAGA 57.629 33.333 0.74 0.00 44.04 2.10
2423 5078 8.119226 GCTAACAATATGAGCAACTCAACTAAG 58.881 37.037 0.74 0.00 44.04 2.18
2424 5079 7.065803 GGCTAACAATATGAGCAACTCAACTAA 59.934 37.037 0.74 0.00 44.04 2.24
2425 5080 6.538742 GGCTAACAATATGAGCAACTCAACTA 59.461 38.462 0.74 0.00 44.04 2.24
2426 5081 5.355350 GGCTAACAATATGAGCAACTCAACT 59.645 40.000 0.74 0.00 44.04 3.16
2427 5082 5.123820 TGGCTAACAATATGAGCAACTCAAC 59.876 40.000 0.74 0.00 44.04 3.18
2428 5083 5.123820 GTGGCTAACAATATGAGCAACTCAA 59.876 40.000 0.74 0.00 44.04 3.02
2429 5084 4.635765 GTGGCTAACAATATGAGCAACTCA 59.364 41.667 0.00 0.00 44.99 3.41
2430 5085 4.635765 TGTGGCTAACAATATGAGCAACTC 59.364 41.667 2.58 0.00 40.27 3.01
2431 5086 4.396166 GTGTGGCTAACAATATGAGCAACT 59.604 41.667 2.58 0.00 40.27 3.16
2432 5087 4.396166 AGTGTGGCTAACAATATGAGCAAC 59.604 41.667 0.00 0.00 41.57 4.17
2433 5088 4.588899 AGTGTGGCTAACAATATGAGCAA 58.411 39.130 0.00 0.00 41.57 3.91
2434 5089 4.220693 AGTGTGGCTAACAATATGAGCA 57.779 40.909 0.00 0.00 41.57 4.26
2435 5090 5.335127 CAAAGTGTGGCTAACAATATGAGC 58.665 41.667 0.00 0.00 41.57 4.26
2436 5091 5.883661 CCAAAGTGTGGCTAACAATATGAG 58.116 41.667 0.00 0.00 41.72 2.90
2437 5092 5.895636 CCAAAGTGTGGCTAACAATATGA 57.104 39.130 0.00 0.00 41.72 2.15
2450 5105 1.203052 CCATAGGCAAGCCAAAGTGTG 59.797 52.381 14.40 1.03 38.92 3.82
2451 5106 1.549203 CCATAGGCAAGCCAAAGTGT 58.451 50.000 14.40 0.00 38.92 3.55
2452 5107 0.819582 CCCATAGGCAAGCCAAAGTG 59.180 55.000 14.40 6.03 38.92 3.16
2453 5108 0.704076 TCCCATAGGCAAGCCAAAGT 59.296 50.000 14.40 0.00 38.92 2.66
2454 5109 1.851304 TTCCCATAGGCAAGCCAAAG 58.149 50.000 14.40 1.90 38.92 2.77
2455 5110 2.024080 AGATTCCCATAGGCAAGCCAAA 60.024 45.455 14.40 0.92 38.92 3.28
2456 5111 1.570501 AGATTCCCATAGGCAAGCCAA 59.429 47.619 14.40 0.00 38.92 4.52
2457 5112 1.225373 AGATTCCCATAGGCAAGCCA 58.775 50.000 14.40 0.00 38.92 4.75
2458 5113 1.959282 CAAGATTCCCATAGGCAAGCC 59.041 52.381 2.02 2.02 0.00 4.35
2459 5114 1.339291 GCAAGATTCCCATAGGCAAGC 59.661 52.381 0.00 0.00 0.00 4.01
2460 5115 1.959282 GGCAAGATTCCCATAGGCAAG 59.041 52.381 0.00 0.00 0.00 4.01
2461 5116 1.287442 TGGCAAGATTCCCATAGGCAA 59.713 47.619 0.00 0.00 0.00 4.52
2462 5117 0.925558 TGGCAAGATTCCCATAGGCA 59.074 50.000 0.00 0.00 0.00 4.75
2463 5118 1.322442 GTGGCAAGATTCCCATAGGC 58.678 55.000 0.00 0.00 32.95 3.93
2464 5119 2.092212 AGTGTGGCAAGATTCCCATAGG 60.092 50.000 0.00 0.00 32.95 2.57
2465 5120 3.287867 AGTGTGGCAAGATTCCCATAG 57.712 47.619 0.00 0.00 32.95 2.23
2466 5121 3.737559 AAGTGTGGCAAGATTCCCATA 57.262 42.857 0.00 0.00 32.95 2.74
2467 5122 2.610438 AAGTGTGGCAAGATTCCCAT 57.390 45.000 0.00 0.00 32.95 4.00
2468 5123 2.380064 AAAGTGTGGCAAGATTCCCA 57.620 45.000 0.00 0.00 0.00 4.37
2469 5124 3.181466 ACAAAAAGTGTGGCAAGATTCCC 60.181 43.478 0.00 0.00 39.72 3.97
2470 5125 4.058721 ACAAAAAGTGTGGCAAGATTCC 57.941 40.909 0.00 0.00 39.72 3.01
2483 5138 6.603201 CCCCATATGTCATAGACACAAAAAGT 59.397 38.462 1.43 0.00 45.65 2.66
2484 5139 6.603201 ACCCCATATGTCATAGACACAAAAAG 59.397 38.462 1.43 0.00 45.65 2.27
2485 5140 6.489603 ACCCCATATGTCATAGACACAAAAA 58.510 36.000 1.43 0.00 45.65 1.94
2486 5141 6.073447 ACCCCATATGTCATAGACACAAAA 57.927 37.500 1.43 0.00 45.65 2.44
2487 5142 5.708736 ACCCCATATGTCATAGACACAAA 57.291 39.130 1.43 0.00 45.65 2.83
2488 5143 5.190726 TGAACCCCATATGTCATAGACACAA 59.809 40.000 1.43 0.00 45.65 3.33
2489 5144 4.719273 TGAACCCCATATGTCATAGACACA 59.281 41.667 1.43 0.00 45.65 3.72
2490 5145 5.057149 GTGAACCCCATATGTCATAGACAC 58.943 45.833 1.43 0.46 45.65 3.67
2491 5146 4.968719 AGTGAACCCCATATGTCATAGACA 59.031 41.667 1.95 1.95 46.90 3.41
2492 5147 5.300752 CAGTGAACCCCATATGTCATAGAC 58.699 45.833 1.24 0.00 0.00 2.59
2493 5148 4.202357 GCAGTGAACCCCATATGTCATAGA 60.202 45.833 1.24 0.00 0.00 1.98
2494 5149 4.067896 GCAGTGAACCCCATATGTCATAG 58.932 47.826 1.24 0.00 0.00 2.23
2495 5150 3.716353 AGCAGTGAACCCCATATGTCATA 59.284 43.478 1.24 0.00 0.00 2.15
2496 5151 2.511218 AGCAGTGAACCCCATATGTCAT 59.489 45.455 1.24 0.00 0.00 3.06
2497 5152 1.915489 AGCAGTGAACCCCATATGTCA 59.085 47.619 1.24 0.00 0.00 3.58
2498 5153 2.092968 TGAGCAGTGAACCCCATATGTC 60.093 50.000 1.24 0.00 0.00 3.06
2499 5154 1.915489 TGAGCAGTGAACCCCATATGT 59.085 47.619 1.24 0.00 0.00 2.29
2500 5155 2.715749 TGAGCAGTGAACCCCATATG 57.284 50.000 0.00 0.00 0.00 1.78
2501 5156 5.387113 TTTATGAGCAGTGAACCCCATAT 57.613 39.130 0.00 0.00 0.00 1.78
2502 5157 4.853468 TTTATGAGCAGTGAACCCCATA 57.147 40.909 0.00 0.00 0.00 2.74
2503 5158 3.737559 TTTATGAGCAGTGAACCCCAT 57.262 42.857 0.00 0.00 0.00 4.00
2504 5159 3.517296 TTTTATGAGCAGTGAACCCCA 57.483 42.857 0.00 0.00 0.00 4.96
2524 5179 5.213891 CCACACCTAAGGCAAGAATTTTT 57.786 39.130 0.00 0.00 0.00 1.94
2525 5180 4.871933 CCACACCTAAGGCAAGAATTTT 57.128 40.909 0.00 0.00 0.00 1.82
2546 5201 3.840124 AGGTAGGTGTTTGGCTATAGC 57.160 47.619 16.78 16.78 41.14 2.97
2547 5202 6.481434 AGTTAGGTAGGTGTTTGGCTATAG 57.519 41.667 0.00 0.00 0.00 1.31
2548 5203 6.352394 CCAAGTTAGGTAGGTGTTTGGCTATA 60.352 42.308 0.00 0.00 0.00 1.31
2549 5204 5.497474 CAAGTTAGGTAGGTGTTTGGCTAT 58.503 41.667 0.00 0.00 0.00 2.97
2550 5205 4.263156 CCAAGTTAGGTAGGTGTTTGGCTA 60.263 45.833 0.00 0.00 0.00 3.93
2551 5206 3.497942 CCAAGTTAGGTAGGTGTTTGGCT 60.498 47.826 0.00 0.00 0.00 4.75
2552 5207 2.817844 CCAAGTTAGGTAGGTGTTTGGC 59.182 50.000 0.00 0.00 0.00 4.52
2553 5208 4.070009 GACCAAGTTAGGTAGGTGTTTGG 58.930 47.826 0.00 0.00 43.38 3.28
2554 5209 4.710324 TGACCAAGTTAGGTAGGTGTTTG 58.290 43.478 0.00 0.00 43.38 2.93
2555 5210 5.376756 TTGACCAAGTTAGGTAGGTGTTT 57.623 39.130 0.00 0.00 43.38 2.83
2556 5211 5.104235 AGTTTGACCAAGTTAGGTAGGTGTT 60.104 40.000 0.00 0.00 43.38 3.32
2557 5212 4.411212 AGTTTGACCAAGTTAGGTAGGTGT 59.589 41.667 0.00 0.00 43.38 4.16
2558 5213 4.969484 AGTTTGACCAAGTTAGGTAGGTG 58.031 43.478 0.00 0.00 43.38 4.00
2559 5214 5.104235 ACAAGTTTGACCAAGTTAGGTAGGT 60.104 40.000 0.00 0.00 43.38 3.08
2560 5215 5.374071 ACAAGTTTGACCAAGTTAGGTAGG 58.626 41.667 0.00 0.00 43.38 3.18
2561 5216 6.289064 AGACAAGTTTGACCAAGTTAGGTAG 58.711 40.000 0.00 0.00 43.38 3.18
2562 5217 6.243216 AGACAAGTTTGACCAAGTTAGGTA 57.757 37.500 0.00 0.00 43.38 3.08
2563 5218 5.112129 AGACAAGTTTGACCAAGTTAGGT 57.888 39.130 0.00 0.00 46.82 3.08
2564 5219 6.204882 CCTTAGACAAGTTTGACCAAGTTAGG 59.795 42.308 0.00 0.00 0.00 2.69
2565 5220 6.766467 ACCTTAGACAAGTTTGACCAAGTTAG 59.234 38.462 0.00 0.00 0.00 2.34
2566 5221 6.655930 ACCTTAGACAAGTTTGACCAAGTTA 58.344 36.000 0.00 0.00 0.00 2.24
2567 5222 5.506708 ACCTTAGACAAGTTTGACCAAGTT 58.493 37.500 0.00 0.00 0.00 2.66
2568 5223 5.112129 ACCTTAGACAAGTTTGACCAAGT 57.888 39.130 0.00 0.00 0.00 3.16
2569 5224 6.204882 CCTAACCTTAGACAAGTTTGACCAAG 59.795 42.308 0.00 0.00 32.47 3.61
2570 5225 6.059484 CCTAACCTTAGACAAGTTTGACCAA 58.941 40.000 0.00 0.00 32.47 3.67
2571 5226 5.617252 CCTAACCTTAGACAAGTTTGACCA 58.383 41.667 0.00 0.00 32.47 4.02
2572 5227 4.454847 GCCTAACCTTAGACAAGTTTGACC 59.545 45.833 0.00 0.00 32.47 4.02
2573 5228 4.151867 CGCCTAACCTTAGACAAGTTTGAC 59.848 45.833 0.00 0.00 32.47 3.18
2574 5229 4.202284 ACGCCTAACCTTAGACAAGTTTGA 60.202 41.667 0.00 0.00 32.47 2.69
2575 5230 4.062991 ACGCCTAACCTTAGACAAGTTTG 58.937 43.478 0.00 0.00 32.47 2.93
2576 5231 4.062991 CACGCCTAACCTTAGACAAGTTT 58.937 43.478 0.00 0.00 32.47 2.66
2577 5232 3.556423 CCACGCCTAACCTTAGACAAGTT 60.556 47.826 0.00 0.00 32.47 2.66
2578 5233 2.028385 CCACGCCTAACCTTAGACAAGT 60.028 50.000 0.00 0.00 32.47 3.16
2579 5234 2.618053 CCACGCCTAACCTTAGACAAG 58.382 52.381 0.00 0.00 32.47 3.16
2580 5235 1.338389 GCCACGCCTAACCTTAGACAA 60.338 52.381 0.00 0.00 32.47 3.18
2581 5236 0.248289 GCCACGCCTAACCTTAGACA 59.752 55.000 0.00 0.00 32.47 3.41
2582 5237 0.248289 TGCCACGCCTAACCTTAGAC 59.752 55.000 0.00 0.00 32.47 2.59
2583 5238 0.978151 TTGCCACGCCTAACCTTAGA 59.022 50.000 0.00 0.00 32.47 2.10
2584 5239 1.737793 CTTTGCCACGCCTAACCTTAG 59.262 52.381 0.00 0.00 0.00 2.18
2585 5240 1.072648 ACTTTGCCACGCCTAACCTTA 59.927 47.619 0.00 0.00 0.00 2.69
2586 5241 0.179001 ACTTTGCCACGCCTAACCTT 60.179 50.000 0.00 0.00 0.00 3.50
2587 5242 0.889186 CACTTTGCCACGCCTAACCT 60.889 55.000 0.00 0.00 0.00 3.50
2588 5243 1.170290 ACACTTTGCCACGCCTAACC 61.170 55.000 0.00 0.00 0.00 2.85
2589 5244 0.040425 CACACTTTGCCACGCCTAAC 60.040 55.000 0.00 0.00 0.00 2.34
2590 5245 1.169661 CCACACTTTGCCACGCCTAA 61.170 55.000 0.00 0.00 0.00 2.69
2591 5246 1.599518 CCACACTTTGCCACGCCTA 60.600 57.895 0.00 0.00 0.00 3.93
2592 5247 2.906897 CCACACTTTGCCACGCCT 60.907 61.111 0.00 0.00 0.00 5.52
2593 5248 4.645921 GCCACACTTTGCCACGCC 62.646 66.667 0.00 0.00 0.00 5.68
2594 5249 3.423162 TTGCCACACTTTGCCACGC 62.423 57.895 0.00 0.00 0.00 5.34
2595 5250 1.299316 CTTGCCACACTTTGCCACG 60.299 57.895 0.00 0.00 0.00 4.94
2596 5251 1.067916 CCTTGCCACACTTTGCCAC 59.932 57.895 0.00 0.00 0.00 5.01
2597 5252 1.381056 ACCTTGCCACACTTTGCCA 60.381 52.632 0.00 0.00 0.00 4.92
2598 5253 1.067916 CACCTTGCCACACTTTGCC 59.932 57.895 0.00 0.00 0.00 4.52
2599 5254 0.528249 CACACCTTGCCACACTTTGC 60.528 55.000 0.00 0.00 0.00 3.68
2600 5255 0.817013 ACACACCTTGCCACACTTTG 59.183 50.000 0.00 0.00 0.00 2.77
2601 5256 1.102978 GACACACCTTGCCACACTTT 58.897 50.000 0.00 0.00 0.00 2.66
2602 5257 0.255890 AGACACACCTTGCCACACTT 59.744 50.000 0.00 0.00 0.00 3.16
2603 5258 0.464373 CAGACACACCTTGCCACACT 60.464 55.000 0.00 0.00 0.00 3.55
2604 5259 1.447317 CCAGACACACCTTGCCACAC 61.447 60.000 0.00 0.00 0.00 3.82
2605 5260 1.152984 CCAGACACACCTTGCCACA 60.153 57.895 0.00 0.00 0.00 4.17
2606 5261 1.898574 CCCAGACACACCTTGCCAC 60.899 63.158 0.00 0.00 0.00 5.01
2607 5262 1.640593 TTCCCAGACACACCTTGCCA 61.641 55.000 0.00 0.00 0.00 4.92
2608 5263 1.150536 TTCCCAGACACACCTTGCC 59.849 57.895 0.00 0.00 0.00 4.52
2609 5264 1.172812 GGTTCCCAGACACACCTTGC 61.173 60.000 0.00 0.00 0.00 4.01
2610 5265 0.182537 TGGTTCCCAGACACACCTTG 59.817 55.000 0.00 0.00 0.00 3.61
2611 5266 0.923358 TTGGTTCCCAGACACACCTT 59.077 50.000 0.00 0.00 33.81 3.50
2612 5267 0.923358 TTTGGTTCCCAGACACACCT 59.077 50.000 0.00 0.00 33.81 4.00
2613 5268 1.029681 GTTTGGTTCCCAGACACACC 58.970 55.000 0.00 0.00 38.34 4.16
2614 5269 1.757682 TGTTTGGTTCCCAGACACAC 58.242 50.000 2.75 0.00 42.46 3.82
2615 5270 2.096248 GTTGTTTGGTTCCCAGACACA 58.904 47.619 6.16 0.00 46.04 3.72
2616 5271 1.407618 GGTTGTTTGGTTCCCAGACAC 59.592 52.381 6.16 3.08 46.04 3.67
2617 5272 1.686741 GGGTTGTTTGGTTCCCAGACA 60.687 52.381 2.75 2.75 44.99 3.41
2618 5273 1.037493 GGGTTGTTTGGTTCCCAGAC 58.963 55.000 0.00 0.00 38.84 3.51
2619 5274 0.105913 GGGGTTGTTTGGTTCCCAGA 60.106 55.000 0.00 0.00 41.51 3.86
2620 5275 0.105709 AGGGGTTGTTTGGTTCCCAG 60.106 55.000 0.00 0.00 41.51 4.45
2621 5276 0.340208 AAGGGGTTGTTTGGTTCCCA 59.660 50.000 0.00 0.00 41.51 4.37
2622 5277 2.385135 TAAGGGGTTGTTTGGTTCCC 57.615 50.000 0.00 0.00 39.22 3.97
2623 5278 4.157246 AGATTAAGGGGTTGTTTGGTTCC 58.843 43.478 0.00 0.00 0.00 3.62
2624 5279 5.279306 GGAAGATTAAGGGGTTGTTTGGTTC 60.279 44.000 0.00 0.00 0.00 3.62
2625 5280 4.591498 GGAAGATTAAGGGGTTGTTTGGTT 59.409 41.667 0.00 0.00 0.00 3.67
2626 5281 4.140782 AGGAAGATTAAGGGGTTGTTTGGT 60.141 41.667 0.00 0.00 0.00 3.67
2627 5282 4.416516 AGGAAGATTAAGGGGTTGTTTGG 58.583 43.478 0.00 0.00 0.00 3.28
2628 5283 7.533289 TTTAGGAAGATTAAGGGGTTGTTTG 57.467 36.000 0.00 0.00 0.00 2.93
2629 5284 8.593679 CAATTTAGGAAGATTAAGGGGTTGTTT 58.406 33.333 0.00 0.00 0.00 2.83
2630 5285 7.310423 GCAATTTAGGAAGATTAAGGGGTTGTT 60.310 37.037 0.00 0.00 0.00 2.83
2631 5286 6.154534 GCAATTTAGGAAGATTAAGGGGTTGT 59.845 38.462 0.00 0.00 0.00 3.32
2632 5287 6.406961 GGCAATTTAGGAAGATTAAGGGGTTG 60.407 42.308 0.00 0.00 0.00 3.77
2633 5288 5.661312 GGCAATTTAGGAAGATTAAGGGGTT 59.339 40.000 0.00 0.00 0.00 4.11
2634 5289 5.208890 GGCAATTTAGGAAGATTAAGGGGT 58.791 41.667 0.00 0.00 0.00 4.95
2635 5290 4.588951 GGGCAATTTAGGAAGATTAAGGGG 59.411 45.833 0.00 0.00 0.00 4.79
2636 5291 5.458595 AGGGCAATTTAGGAAGATTAAGGG 58.541 41.667 0.00 0.00 0.00 3.95
2637 5292 6.129179 TGAGGGCAATTTAGGAAGATTAAGG 58.871 40.000 0.00 0.00 0.00 2.69
2638 5293 7.645058 TTGAGGGCAATTTAGGAAGATTAAG 57.355 36.000 0.00 0.00 0.00 1.85
2649 5304 8.319881 TGATTTCAATGATTTGAGGGCAATTTA 58.680 29.630 0.00 0.00 42.60 1.40
2682 5337 5.293079 GTGATCTTTGCAATGAGTACTCCTC 59.707 44.000 20.11 10.76 40.89 3.71
2683 5338 5.046014 AGTGATCTTTGCAATGAGTACTCCT 60.046 40.000 20.11 7.68 0.00 3.69
2685 5340 5.293079 GGAGTGATCTTTGCAATGAGTACTC 59.707 44.000 29.82 29.82 33.34 2.59
2687 5342 4.333926 GGGAGTGATCTTTGCAATGAGTAC 59.666 45.833 18.58 17.73 0.00 2.73
2688 5343 4.019411 TGGGAGTGATCTTTGCAATGAGTA 60.019 41.667 18.58 8.67 0.00 2.59
2690 5345 3.128242 GTGGGAGTGATCTTTGCAATGAG 59.872 47.826 18.58 6.50 0.00 2.90
2691 5346 3.084039 GTGGGAGTGATCTTTGCAATGA 58.916 45.455 16.45 16.45 0.00 2.57
2692 5347 2.821378 TGTGGGAGTGATCTTTGCAATG 59.179 45.455 0.00 2.27 0.00 2.82
2693 5348 3.159213 TGTGGGAGTGATCTTTGCAAT 57.841 42.857 0.00 0.00 0.00 3.56
2695 5350 2.885135 ATGTGGGAGTGATCTTTGCA 57.115 45.000 0.00 0.00 0.00 4.08
2696 5351 3.119352 GGAAATGTGGGAGTGATCTTTGC 60.119 47.826 0.00 0.00 0.00 3.68
2697 5352 4.081406 TGGAAATGTGGGAGTGATCTTTG 58.919 43.478 0.00 0.00 0.00 2.77
2698 5353 4.043310 TCTGGAAATGTGGGAGTGATCTTT 59.957 41.667 0.00 0.00 0.00 2.52
2699 5354 3.588842 TCTGGAAATGTGGGAGTGATCTT 59.411 43.478 0.00 0.00 0.00 2.40
2700 5355 3.184628 TCTGGAAATGTGGGAGTGATCT 58.815 45.455 0.00 0.00 0.00 2.75
2701 5356 3.634397 TCTGGAAATGTGGGAGTGATC 57.366 47.619 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.