Multiple sequence alignment - TraesCS3A01G165600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G165600 chr3A 100.000 2867 0 0 1 2867 170657625 170660491 0.000000e+00 5295.0
1 TraesCS3A01G165600 chr3A 78.812 623 118 11 1233 1848 170811690 170812305 9.560000e-110 407.0
2 TraesCS3A01G165600 chr3A 76.726 623 132 11 1228 1845 559334333 559334947 4.580000e-88 335.0
3 TraesCS3A01G165600 chr3A 98.077 52 1 0 955 1006 170658475 170658526 1.090000e-14 91.6
4 TraesCS3A01G165600 chr3A 98.077 52 1 0 851 902 170658579 170658630 1.090000e-14 91.6
5 TraesCS3A01G165600 chr3A 93.750 48 3 0 1091 1138 594492286 594492333 3.960000e-09 73.1
6 TraesCS3A01G165600 chr3D 92.875 2021 85 24 902 2867 157540926 157538910 0.000000e+00 2880.0
7 TraesCS3A01G165600 chr3D 88.090 445 23 8 418 854 157541368 157540946 4.260000e-138 501.0
8 TraesCS3A01G165600 chr3D 78.758 612 117 11 1242 1848 157443368 157442765 5.760000e-107 398.0
9 TraesCS3A01G165600 chr3D 77.083 624 130 11 1230 1848 427294810 427294195 5.880000e-92 348.0
10 TraesCS3A01G165600 chr3D 91.667 48 4 0 1091 1138 451709916 451709963 1.840000e-07 67.6
11 TraesCS3A01G165600 chr3D 91.667 48 4 0 1091 1138 451885415 451885462 1.840000e-07 67.6
12 TraesCS3A01G165600 chr3B 89.375 1713 129 24 1172 2867 228750782 228749106 0.000000e+00 2106.0
13 TraesCS3A01G165600 chr3B 89.333 450 31 9 418 854 228751558 228751113 1.500000e-152 549.0
14 TraesCS3A01G165600 chr3B 78.013 614 118 15 1242 1848 228690775 228690172 1.250000e-98 370.0
15 TraesCS3A01G165600 chr3B 76.518 626 130 15 1230 1848 556960062 556959447 2.750000e-85 326.0
16 TraesCS3A01G165600 chr3B 87.823 271 15 6 902 1162 228751093 228750831 4.640000e-78 302.0
17 TraesCS3A01G165600 chr3B 93.750 48 3 0 1091 1138 593163661 593163708 3.960000e-09 73.1
18 TraesCS3A01G165600 chr3B 93.750 48 3 0 1091 1138 593541139 593541186 3.960000e-09 73.1
19 TraesCS3A01G165600 chr7B 91.162 396 27 2 1 396 63565579 63565192 5.440000e-147 531.0
20 TraesCS3A01G165600 chr2B 90.727 399 36 1 1 398 632448940 632449338 5.440000e-147 531.0
21 TraesCS3A01G165600 chr1D 90.932 397 32 4 1 394 28029194 28029589 5.440000e-147 531.0
22 TraesCS3A01G165600 chr1D 92.204 372 26 3 28 396 41306910 41307281 9.100000e-145 523.0
23 TraesCS3A01G165600 chr5A 92.837 363 26 0 34 396 554230302 554229940 7.040000e-146 527.0
24 TraesCS3A01G165600 chr4A 90.750 400 27 2 1 399 5841698 5841308 2.530000e-145 525.0
25 TraesCS3A01G165600 chr4A 83.000 300 39 10 1250 1543 26413796 26413503 7.880000e-66 261.0
26 TraesCS3A01G165600 chr2A 92.141 369 27 2 35 402 758422908 758422541 1.180000e-143 520.0
27 TraesCS3A01G165600 chr2A 89.950 398 31 5 1 398 411114635 411115023 3.300000e-139 505.0
28 TraesCS3A01G165600 chr5B 89.724 399 34 3 1 399 166545084 166544693 1.190000e-138 503.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G165600 chr3A 170657625 170660491 2866 False 1826.066667 5295 98.718000 1 2867 3 chr3A.!!$F4 2866
1 TraesCS3A01G165600 chr3A 170811690 170812305 615 False 407.000000 407 78.812000 1233 1848 1 chr3A.!!$F1 615
2 TraesCS3A01G165600 chr3A 559334333 559334947 614 False 335.000000 335 76.726000 1228 1845 1 chr3A.!!$F2 617
3 TraesCS3A01G165600 chr3D 157538910 157541368 2458 True 1690.500000 2880 90.482500 418 2867 2 chr3D.!!$R3 2449
4 TraesCS3A01G165600 chr3D 157442765 157443368 603 True 398.000000 398 78.758000 1242 1848 1 chr3D.!!$R1 606
5 TraesCS3A01G165600 chr3D 427294195 427294810 615 True 348.000000 348 77.083000 1230 1848 1 chr3D.!!$R2 618
6 TraesCS3A01G165600 chr3B 228749106 228751558 2452 True 985.666667 2106 88.843667 418 2867 3 chr3B.!!$R3 2449
7 TraesCS3A01G165600 chr3B 228690172 228690775 603 True 370.000000 370 78.013000 1242 1848 1 chr3B.!!$R1 606
8 TraesCS3A01G165600 chr3B 556959447 556960062 615 True 326.000000 326 76.518000 1230 1848 1 chr3B.!!$R2 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
856 873 0.036294 GGAGGGGACGGAAAGAGTTG 60.036 60.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2760 2843 0.035534 TATGCAAGCGGCTTCTCCAA 60.036 50.0 13.24 0.0 45.15 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.047274 CGGCGAGGAAGCAAAGGA 60.047 61.111 0.00 0.00 39.27 3.36
18 19 1.671054 CGGCGAGGAAGCAAAGGAA 60.671 57.895 0.00 0.00 39.27 3.36
19 20 1.639298 CGGCGAGGAAGCAAAGGAAG 61.639 60.000 0.00 0.00 39.27 3.46
20 21 0.606673 GGCGAGGAAGCAAAGGAAGT 60.607 55.000 0.00 0.00 39.27 3.01
21 22 0.519077 GCGAGGAAGCAAAGGAAGTG 59.481 55.000 0.00 0.00 37.05 3.16
22 23 1.160137 CGAGGAAGCAAAGGAAGTGG 58.840 55.000 0.00 0.00 0.00 4.00
23 24 1.543429 CGAGGAAGCAAAGGAAGTGGT 60.543 52.381 0.00 0.00 0.00 4.16
24 25 1.882623 GAGGAAGCAAAGGAAGTGGTG 59.117 52.381 0.00 0.00 0.00 4.17
25 26 0.961753 GGAAGCAAAGGAAGTGGTGG 59.038 55.000 0.00 0.00 0.00 4.61
26 27 1.692411 GAAGCAAAGGAAGTGGTGGT 58.308 50.000 0.00 0.00 0.00 4.16
27 28 1.338020 GAAGCAAAGGAAGTGGTGGTG 59.662 52.381 0.00 0.00 0.00 4.17
28 29 0.468029 AGCAAAGGAAGTGGTGGTGG 60.468 55.000 0.00 0.00 0.00 4.61
29 30 1.463553 GCAAAGGAAGTGGTGGTGGG 61.464 60.000 0.00 0.00 0.00 4.61
30 31 0.184933 CAAAGGAAGTGGTGGTGGGA 59.815 55.000 0.00 0.00 0.00 4.37
31 32 0.478507 AAAGGAAGTGGTGGTGGGAG 59.521 55.000 0.00 0.00 0.00 4.30
32 33 1.427072 AAGGAAGTGGTGGTGGGAGG 61.427 60.000 0.00 0.00 0.00 4.30
33 34 2.757077 GAAGTGGTGGTGGGAGGG 59.243 66.667 0.00 0.00 0.00 4.30
34 35 2.858974 AAGTGGTGGTGGGAGGGG 60.859 66.667 0.00 0.00 0.00 4.79
51 52 3.399181 GGGGGCAGATGTGGACGA 61.399 66.667 0.00 0.00 0.00 4.20
52 53 2.187946 GGGGCAGATGTGGACGAG 59.812 66.667 0.00 0.00 0.00 4.18
53 54 2.359169 GGGGCAGATGTGGACGAGA 61.359 63.158 0.00 0.00 0.00 4.04
54 55 1.142748 GGGCAGATGTGGACGAGAG 59.857 63.158 0.00 0.00 0.00 3.20
55 56 1.323271 GGGCAGATGTGGACGAGAGA 61.323 60.000 0.00 0.00 0.00 3.10
56 57 0.532573 GGCAGATGTGGACGAGAGAA 59.467 55.000 0.00 0.00 0.00 2.87
57 58 1.470632 GGCAGATGTGGACGAGAGAAG 60.471 57.143 0.00 0.00 0.00 2.85
58 59 1.203523 GCAGATGTGGACGAGAGAAGT 59.796 52.381 0.00 0.00 0.00 3.01
59 60 2.873609 CAGATGTGGACGAGAGAAGTG 58.126 52.381 0.00 0.00 0.00 3.16
60 61 1.821753 AGATGTGGACGAGAGAAGTGG 59.178 52.381 0.00 0.00 0.00 4.00
61 62 1.819288 GATGTGGACGAGAGAAGTGGA 59.181 52.381 0.00 0.00 0.00 4.02
62 63 1.924731 TGTGGACGAGAGAAGTGGAT 58.075 50.000 0.00 0.00 0.00 3.41
63 64 1.546029 TGTGGACGAGAGAAGTGGATG 59.454 52.381 0.00 0.00 0.00 3.51
64 65 1.819288 GTGGACGAGAGAAGTGGATGA 59.181 52.381 0.00 0.00 0.00 2.92
65 66 2.095461 TGGACGAGAGAAGTGGATGAG 58.905 52.381 0.00 0.00 0.00 2.90
66 67 1.407258 GGACGAGAGAAGTGGATGAGG 59.593 57.143 0.00 0.00 0.00 3.86
67 68 0.820871 ACGAGAGAAGTGGATGAGGC 59.179 55.000 0.00 0.00 0.00 4.70
68 69 0.103937 CGAGAGAAGTGGATGAGGCC 59.896 60.000 0.00 0.00 0.00 5.19
69 70 0.103937 GAGAGAAGTGGATGAGGCCG 59.896 60.000 0.00 0.00 0.00 6.13
70 71 0.324738 AGAGAAGTGGATGAGGCCGA 60.325 55.000 0.00 0.00 0.00 5.54
71 72 0.179097 GAGAAGTGGATGAGGCCGAC 60.179 60.000 0.00 0.00 0.00 4.79
72 73 1.153349 GAAGTGGATGAGGCCGACC 60.153 63.158 0.00 0.00 0.00 4.79
73 74 2.595009 GAAGTGGATGAGGCCGACCC 62.595 65.000 0.00 0.00 36.11 4.46
74 75 4.176752 GTGGATGAGGCCGACCCC 62.177 72.222 0.00 0.00 36.11 4.95
92 93 3.548280 GCCGTACGCGTGGTTAAA 58.452 55.556 24.59 0.00 36.15 1.52
93 94 1.858719 GCCGTACGCGTGGTTAAAA 59.141 52.632 24.59 0.00 36.15 1.52
94 95 0.234365 GCCGTACGCGTGGTTAAAAA 59.766 50.000 24.59 0.00 36.15 1.94
110 111 2.083167 AAAAAGGACATGCGCATTGG 57.917 45.000 22.81 13.54 0.00 3.16
111 112 0.390209 AAAAGGACATGCGCATTGGC 60.390 50.000 22.81 18.03 0.00 4.52
112 113 1.252904 AAAGGACATGCGCATTGGCT 61.253 50.000 22.81 2.93 38.10 4.75
113 114 1.940883 AAGGACATGCGCATTGGCTG 61.941 55.000 22.81 13.76 38.10 4.85
114 115 2.409055 GGACATGCGCATTGGCTGA 61.409 57.895 22.81 0.00 38.10 4.26
115 116 1.226491 GACATGCGCATTGGCTGAC 60.226 57.895 22.81 7.45 38.10 3.51
116 117 2.277692 CATGCGCATTGGCTGACG 60.278 61.111 22.81 2.46 38.10 4.35
117 118 4.183686 ATGCGCATTGGCTGACGC 62.184 61.111 19.28 0.00 44.88 5.19
120 121 4.799473 CGCATTGGCTGACGCGTG 62.799 66.667 20.70 3.71 42.66 5.34
121 122 4.465512 GCATTGGCTGACGCGTGG 62.466 66.667 20.70 10.85 36.88 4.94
122 123 3.803082 CATTGGCTGACGCGTGGG 61.803 66.667 20.70 10.43 36.88 4.61
142 143 4.337060 CGCTGTCGGTGGTCGTCA 62.337 66.667 0.00 0.00 40.32 4.35
143 144 2.261671 GCTGTCGGTGGTCGTCAT 59.738 61.111 0.00 0.00 36.45 3.06
144 145 1.509463 GCTGTCGGTGGTCGTCATA 59.491 57.895 0.00 0.00 36.45 2.15
145 146 0.108992 GCTGTCGGTGGTCGTCATAA 60.109 55.000 0.00 0.00 36.45 1.90
146 147 1.670674 GCTGTCGGTGGTCGTCATAAA 60.671 52.381 0.00 0.00 36.45 1.40
147 148 2.888594 CTGTCGGTGGTCGTCATAAAT 58.111 47.619 0.00 0.00 36.45 1.40
148 149 3.735820 GCTGTCGGTGGTCGTCATAAATA 60.736 47.826 0.00 0.00 36.45 1.40
149 150 4.426416 CTGTCGGTGGTCGTCATAAATAA 58.574 43.478 0.00 0.00 36.45 1.40
150 151 4.426416 TGTCGGTGGTCGTCATAAATAAG 58.574 43.478 0.00 0.00 40.32 1.73
151 152 4.158209 TGTCGGTGGTCGTCATAAATAAGA 59.842 41.667 0.00 0.00 40.32 2.10
152 153 4.501921 GTCGGTGGTCGTCATAAATAAGAC 59.498 45.833 0.00 0.00 40.32 3.01
162 163 6.570690 GTCATAAATAAGACGACAGGTGAC 57.429 41.667 0.00 0.00 0.00 3.67
163 164 5.229469 GTCATAAATAAGACGACAGGTGACG 59.771 44.000 0.29 0.29 38.99 4.35
164 165 2.649331 AATAAGACGACAGGTGACGG 57.351 50.000 6.78 0.00 37.51 4.79
165 166 1.542492 ATAAGACGACAGGTGACGGT 58.458 50.000 6.78 0.00 43.23 4.83
166 167 1.321474 TAAGACGACAGGTGACGGTT 58.679 50.000 6.78 2.77 39.51 4.44
167 168 0.249322 AAGACGACAGGTGACGGTTG 60.249 55.000 6.78 0.00 44.52 3.77
168 169 1.663702 GACGACAGGTGACGGTTGG 60.664 63.158 6.78 0.00 43.41 3.77
169 170 2.357034 CGACAGGTGACGGTTGGG 60.357 66.667 0.00 0.00 39.51 4.12
170 171 2.826702 GACAGGTGACGGTTGGGT 59.173 61.111 0.00 0.00 39.51 4.51
171 172 1.597027 GACAGGTGACGGTTGGGTG 60.597 63.158 0.00 0.00 39.51 4.61
172 173 2.281484 CAGGTGACGGTTGGGTGG 60.281 66.667 0.00 0.00 0.00 4.61
173 174 4.265056 AGGTGACGGTTGGGTGGC 62.265 66.667 0.00 0.00 0.00 5.01
245 246 3.849953 GTCCGCGCCGACACATTC 61.850 66.667 21.55 0.00 32.74 2.67
248 249 3.853330 CGCGCCGACACATTCCAG 61.853 66.667 0.00 0.00 0.00 3.86
249 250 3.499737 GCGCCGACACATTCCAGG 61.500 66.667 0.00 0.00 0.00 4.45
250 251 3.499737 CGCCGACACATTCCAGGC 61.500 66.667 0.00 0.00 44.00 4.85
251 252 3.499737 GCCGACACATTCCAGGCG 61.500 66.667 0.00 0.00 38.28 5.52
252 253 3.499737 CCGACACATTCCAGGCGC 61.500 66.667 0.00 0.00 0.00 6.53
253 254 2.741985 CGACACATTCCAGGCGCA 60.742 61.111 10.83 0.00 0.00 6.09
254 255 2.324330 CGACACATTCCAGGCGCAA 61.324 57.895 10.83 0.00 0.00 4.85
255 256 1.647545 CGACACATTCCAGGCGCAAT 61.648 55.000 10.83 0.00 0.00 3.56
256 257 0.527565 GACACATTCCAGGCGCAATT 59.472 50.000 10.83 0.00 0.00 2.32
257 258 0.968405 ACACATTCCAGGCGCAATTT 59.032 45.000 10.83 0.00 0.00 1.82
258 259 1.344114 ACACATTCCAGGCGCAATTTT 59.656 42.857 10.83 0.00 0.00 1.82
259 260 1.727880 CACATTCCAGGCGCAATTTTG 59.272 47.619 10.83 1.52 0.00 2.44
260 261 1.338011 ACATTCCAGGCGCAATTTTGG 60.338 47.619 10.83 8.73 0.00 3.28
261 262 0.249955 ATTCCAGGCGCAATTTTGGG 59.750 50.000 10.83 3.21 43.22 4.12
262 263 1.118356 TTCCAGGCGCAATTTTGGGT 61.118 50.000 10.83 0.00 42.44 4.51
263 264 1.079888 CCAGGCGCAATTTTGGGTC 60.080 57.895 10.83 3.99 44.89 4.46
264 265 1.664873 CAGGCGCAATTTTGGGTCA 59.335 52.632 10.83 0.00 46.67 4.02
265 266 0.388907 CAGGCGCAATTTTGGGTCAG 60.389 55.000 10.83 2.80 46.67 3.51
266 267 0.539438 AGGCGCAATTTTGGGTCAGA 60.539 50.000 10.83 0.00 46.67 3.27
267 268 0.316841 GGCGCAATTTTGGGTCAGAA 59.683 50.000 10.83 0.00 44.10 3.02
268 269 1.270041 GGCGCAATTTTGGGTCAGAAA 60.270 47.619 10.83 0.00 44.10 2.52
269 270 2.612721 GGCGCAATTTTGGGTCAGAAAT 60.613 45.455 10.83 0.00 44.10 2.17
270 271 2.412770 GCGCAATTTTGGGTCAGAAATG 59.587 45.455 0.30 0.00 42.44 2.32
271 272 2.995258 CGCAATTTTGGGTCAGAAATGG 59.005 45.455 0.00 0.00 36.49 3.16
272 273 3.337358 GCAATTTTGGGTCAGAAATGGG 58.663 45.455 0.00 0.00 0.00 4.00
273 274 3.244526 GCAATTTTGGGTCAGAAATGGGT 60.245 43.478 0.00 0.00 0.00 4.51
274 275 4.568956 CAATTTTGGGTCAGAAATGGGTC 58.431 43.478 0.00 0.00 0.00 4.46
275 276 1.904287 TTTGGGTCAGAAATGGGTCG 58.096 50.000 0.00 0.00 0.00 4.79
276 277 0.037590 TTGGGTCAGAAATGGGTCGG 59.962 55.000 0.00 0.00 0.00 4.79
277 278 1.749258 GGGTCAGAAATGGGTCGGC 60.749 63.158 0.00 0.00 0.00 5.54
278 279 2.106683 GGTCAGAAATGGGTCGGCG 61.107 63.158 0.00 0.00 0.00 6.46
279 280 2.435938 TCAGAAATGGGTCGGCGC 60.436 61.111 0.00 0.00 0.00 6.53
280 281 3.864686 CAGAAATGGGTCGGCGCG 61.865 66.667 0.00 0.00 0.00 6.86
302 303 3.496131 CCGGGCGGACACGATTTG 61.496 66.667 0.00 0.00 44.60 2.32
303 304 2.433491 CGGGCGGACACGATTTGA 60.433 61.111 0.00 0.00 44.60 2.69
304 305 2.030401 CGGGCGGACACGATTTGAA 61.030 57.895 0.00 0.00 44.60 2.69
305 306 1.366111 CGGGCGGACACGATTTGAAT 61.366 55.000 0.00 0.00 44.60 2.57
306 307 0.808755 GGGCGGACACGATTTGAATT 59.191 50.000 0.00 0.00 44.60 2.17
307 308 1.201414 GGGCGGACACGATTTGAATTT 59.799 47.619 0.00 0.00 44.60 1.82
308 309 2.250188 GGCGGACACGATTTGAATTTG 58.750 47.619 0.00 0.00 44.60 2.32
309 310 2.250188 GCGGACACGATTTGAATTTGG 58.750 47.619 0.00 0.00 44.60 3.28
310 311 2.862512 CGGACACGATTTGAATTTGGG 58.137 47.619 0.00 0.00 44.60 4.12
311 312 2.227865 CGGACACGATTTGAATTTGGGT 59.772 45.455 0.00 0.00 44.60 4.51
312 313 3.669557 CGGACACGATTTGAATTTGGGTC 60.670 47.826 1.92 1.92 44.60 4.46
313 314 3.488489 GACACGATTTGAATTTGGGTCG 58.512 45.455 0.00 0.00 35.42 4.79
314 315 2.227865 ACACGATTTGAATTTGGGTCGG 59.772 45.455 0.00 0.00 33.75 4.79
315 316 1.201414 ACGATTTGAATTTGGGTCGGC 59.799 47.619 0.00 0.00 33.75 5.54
316 317 1.793714 CGATTTGAATTTGGGTCGGCG 60.794 52.381 0.00 0.00 0.00 6.46
317 318 0.108851 ATTTGAATTTGGGTCGGCGC 60.109 50.000 0.00 0.00 0.00 6.53
318 319 2.465097 TTTGAATTTGGGTCGGCGCG 62.465 55.000 0.00 0.00 0.00 6.86
319 320 3.428282 GAATTTGGGTCGGCGCGT 61.428 61.111 8.43 0.00 0.00 6.01
320 321 2.973316 GAATTTGGGTCGGCGCGTT 61.973 57.895 8.43 0.00 0.00 4.84
321 322 3.262142 AATTTGGGTCGGCGCGTTG 62.262 57.895 8.43 0.00 0.00 4.10
334 335 3.601685 CGTTGGGCCGCCACTTTT 61.602 61.111 12.58 0.00 0.00 2.27
335 336 2.028925 GTTGGGCCGCCACTTTTG 59.971 61.111 12.58 0.00 0.00 2.44
336 337 2.443016 TTGGGCCGCCACTTTTGT 60.443 55.556 12.58 0.00 0.00 2.83
337 338 2.494530 TTGGGCCGCCACTTTTGTC 61.495 57.895 12.58 0.00 0.00 3.18
338 339 3.680786 GGGCCGCCACTTTTGTCC 61.681 66.667 12.58 0.00 0.00 4.02
339 340 4.038080 GGCCGCCACTTTTGTCCG 62.038 66.667 3.91 0.00 0.00 4.79
340 341 4.700365 GCCGCCACTTTTGTCCGC 62.700 66.667 0.00 0.00 0.00 5.54
341 342 4.383602 CCGCCACTTTTGTCCGCG 62.384 66.667 0.00 0.00 43.69 6.46
343 344 4.700365 GCCACTTTTGTCCGCGCC 62.700 66.667 0.00 0.00 0.00 6.53
344 345 4.383602 CCACTTTTGTCCGCGCCG 62.384 66.667 0.00 0.00 0.00 6.46
345 346 3.342627 CACTTTTGTCCGCGCCGA 61.343 61.111 0.00 0.00 0.00 5.54
346 347 3.343421 ACTTTTGTCCGCGCCGAC 61.343 61.111 20.04 20.04 0.00 4.79
347 348 3.342627 CTTTTGTCCGCGCCGACA 61.343 61.111 24.54 24.54 40.98 4.35
348 349 3.573489 CTTTTGTCCGCGCCGACAC 62.573 63.158 27.37 8.24 42.37 3.67
349 350 4.893601 TTTGTCCGCGCCGACACA 62.894 61.111 27.37 20.06 42.37 3.72
350 351 4.893601 TTGTCCGCGCCGACACAA 62.894 61.111 27.37 15.68 42.37 3.33
351 352 4.893601 TGTCCGCGCCGACACAAA 62.894 61.111 24.54 5.13 37.85 2.83
352 353 4.364409 GTCCGCGCCGACACAAAC 62.364 66.667 21.55 0.00 32.74 2.93
355 356 3.990806 CGCGCCGACACAAACGAA 61.991 61.111 0.00 0.00 0.00 3.85
356 357 2.424640 GCGCCGACACAAACGAAC 60.425 61.111 0.00 0.00 0.00 3.95
357 358 2.128274 CGCCGACACAAACGAACG 60.128 61.111 0.00 0.00 0.00 3.95
358 359 2.424640 GCCGACACAAACGAACGC 60.425 61.111 0.00 0.00 0.00 4.84
359 360 2.128274 CCGACACAAACGAACGCG 60.128 61.111 3.53 3.53 44.79 6.01
360 361 2.578679 CCGACACAAACGAACGCGA 61.579 57.895 15.93 0.00 41.64 5.87
361 362 1.270388 CGACACAAACGAACGCGAA 59.730 52.632 15.93 0.00 41.64 4.70
362 363 0.978684 CGACACAAACGAACGCGAAC 60.979 55.000 15.93 5.01 41.64 3.95
364 365 1.716378 CACAAACGAACGCGAACGG 60.716 57.895 25.54 14.83 46.04 4.44
365 366 1.877617 ACAAACGAACGCGAACGGA 60.878 52.632 25.54 0.00 46.04 4.69
366 367 1.216941 ACAAACGAACGCGAACGGAT 61.217 50.000 25.54 15.45 46.04 4.18
367 368 0.784250 CAAACGAACGCGAACGGATG 60.784 55.000 25.54 20.43 46.04 3.51
368 369 0.940519 AAACGAACGCGAACGGATGA 60.941 50.000 25.54 0.00 46.04 2.92
369 370 0.940519 AACGAACGCGAACGGATGAA 60.941 50.000 25.54 0.00 46.04 2.57
370 371 0.940519 ACGAACGCGAACGGATGAAA 60.941 50.000 25.54 0.00 46.04 2.69
371 372 0.368907 CGAACGCGAACGGATGAAAT 59.631 50.000 15.93 0.00 46.04 2.17
372 373 1.797964 GAACGCGAACGGATGAAATG 58.202 50.000 15.93 0.00 46.04 2.32
373 374 0.446222 AACGCGAACGGATGAAATGG 59.554 50.000 15.93 0.00 46.04 3.16
374 375 1.351707 CGCGAACGGATGAAATGGG 59.648 57.895 0.00 0.00 34.97 4.00
375 376 1.366111 CGCGAACGGATGAAATGGGT 61.366 55.000 0.00 0.00 34.97 4.51
376 377 0.377203 GCGAACGGATGAAATGGGTC 59.623 55.000 0.00 0.00 0.00 4.46
377 378 0.650512 CGAACGGATGAAATGGGTCG 59.349 55.000 0.00 0.00 31.62 4.79
378 379 0.377203 GAACGGATGAAATGGGTCGC 59.623 55.000 0.00 0.00 0.00 5.19
379 380 1.029947 AACGGATGAAATGGGTCGCC 61.030 55.000 0.00 0.00 0.00 5.54
380 381 2.186826 CGGATGAAATGGGTCGCCC 61.187 63.158 7.87 7.87 45.71 6.13
390 391 2.355115 GGTCGCCCCATTGGAGTT 59.645 61.111 3.62 0.00 35.07 3.01
391 392 2.046285 GGTCGCCCCATTGGAGTTG 61.046 63.158 3.62 0.00 35.07 3.16
392 393 2.361104 TCGCCCCATTGGAGTTGC 60.361 61.111 3.62 0.53 35.07 4.17
393 394 2.361610 CGCCCCATTGGAGTTGCT 60.362 61.111 3.62 0.00 35.39 3.91
394 395 2.409870 CGCCCCATTGGAGTTGCTC 61.410 63.158 3.62 0.00 35.39 4.26
395 396 1.000396 GCCCCATTGGAGTTGCTCT 60.000 57.895 3.62 0.00 35.39 4.09
396 397 0.255890 GCCCCATTGGAGTTGCTCTA 59.744 55.000 3.62 0.00 35.39 2.43
397 398 1.340991 GCCCCATTGGAGTTGCTCTAA 60.341 52.381 3.62 0.00 35.57 2.10
398 399 2.369394 CCCCATTGGAGTTGCTCTAAC 58.631 52.381 3.62 0.00 34.03 2.34
407 408 3.252974 AGTTGCTCTAACTCCGGATTG 57.747 47.619 3.57 0.00 46.55 2.67
408 409 2.093447 AGTTGCTCTAACTCCGGATTGG 60.093 50.000 3.57 4.11 46.55 3.16
409 410 4.387326 AGTTGCTCTAACTCCGGATTGGA 61.387 47.826 3.57 8.44 46.55 3.53
433 434 1.137086 GCTCTAACTCCCGAATCTGCA 59.863 52.381 0.00 0.00 0.00 4.41
490 493 2.159572 CGGACTGGCCAAATTTTACGAG 60.160 50.000 7.01 0.00 35.94 4.18
493 496 4.879545 GGACTGGCCAAATTTTACGAGATA 59.120 41.667 7.01 0.00 36.34 1.98
494 497 5.531287 GGACTGGCCAAATTTTACGAGATAT 59.469 40.000 7.01 0.00 36.34 1.63
495 498 6.377327 ACTGGCCAAATTTTACGAGATATG 57.623 37.500 7.01 0.00 0.00 1.78
498 501 5.530915 TGGCCAAATTTTACGAGATATGGAG 59.469 40.000 0.61 0.00 0.00 3.86
499 502 5.763204 GGCCAAATTTTACGAGATATGGAGA 59.237 40.000 0.00 0.00 0.00 3.71
500 503 6.262273 GGCCAAATTTTACGAGATATGGAGAA 59.738 38.462 0.00 0.00 0.00 2.87
501 504 7.040409 GGCCAAATTTTACGAGATATGGAGAAT 60.040 37.037 0.00 0.00 0.00 2.40
502 505 8.352942 GCCAAATTTTACGAGATATGGAGAATT 58.647 33.333 0.00 0.00 0.00 2.17
553 556 3.557595 CACAAGAACTGAAACTCGCTTCT 59.442 43.478 0.00 0.00 0.00 2.85
570 573 5.010314 TCGCTTCTAAGGAACAACTACAAGA 59.990 40.000 0.00 0.00 0.00 3.02
572 575 6.346678 CGCTTCTAAGGAACAACTACAAGAAC 60.347 42.308 0.00 0.00 0.00 3.01
573 576 6.482308 GCTTCTAAGGAACAACTACAAGAACA 59.518 38.462 0.00 0.00 0.00 3.18
574 577 7.518529 GCTTCTAAGGAACAACTACAAGAACAC 60.519 40.741 0.00 0.00 0.00 3.32
576 579 6.984474 TCTAAGGAACAACTACAAGAACACAG 59.016 38.462 0.00 0.00 0.00 3.66
577 580 5.099042 AGGAACAACTACAAGAACACAGT 57.901 39.130 0.00 0.00 0.00 3.55
578 581 5.497474 AGGAACAACTACAAGAACACAGTT 58.503 37.500 0.00 0.00 0.00 3.16
581 584 4.552166 CAACTACAAGAACACAGTTGGG 57.448 45.455 5.60 0.00 42.57 4.12
583 586 2.092646 ACTACAAGAACACAGTTGGGCA 60.093 45.455 0.00 0.00 0.00 5.36
585 588 1.102154 CAAGAACACAGTTGGGCACA 58.898 50.000 0.00 0.00 0.00 4.57
586 589 1.102978 AAGAACACAGTTGGGCACAC 58.897 50.000 0.00 0.00 0.00 3.82
588 591 0.663153 GAACACAGTTGGGCACACTC 59.337 55.000 0.00 0.00 0.00 3.51
602 606 3.815401 GGCACACTCGATTAATAATGCCT 59.185 43.478 4.70 0.00 46.31 4.75
633 637 7.417683 CCAGATATTCACCATCCTCTATGCTAG 60.418 44.444 0.00 0.00 33.92 3.42
851 868 4.468689 GCGGGAGGGGACGGAAAG 62.469 72.222 0.00 0.00 0.00 2.62
852 869 2.682494 CGGGAGGGGACGGAAAGA 60.682 66.667 0.00 0.00 0.00 2.52
853 870 2.722201 CGGGAGGGGACGGAAAGAG 61.722 68.421 0.00 0.00 0.00 2.85
854 871 1.612739 GGGAGGGGACGGAAAGAGT 60.613 63.158 0.00 0.00 0.00 3.24
855 872 1.199425 GGGAGGGGACGGAAAGAGTT 61.199 60.000 0.00 0.00 0.00 3.01
856 873 0.036294 GGAGGGGACGGAAAGAGTTG 60.036 60.000 0.00 0.00 0.00 3.16
857 874 0.974383 GAGGGGACGGAAAGAGTTGA 59.026 55.000 0.00 0.00 0.00 3.18
858 875 1.346722 GAGGGGACGGAAAGAGTTGAA 59.653 52.381 0.00 0.00 0.00 2.69
859 876 1.348036 AGGGGACGGAAAGAGTTGAAG 59.652 52.381 0.00 0.00 0.00 3.02
860 877 1.071857 GGGGACGGAAAGAGTTGAAGT 59.928 52.381 0.00 0.00 0.00 3.01
862 879 3.211865 GGGACGGAAAGAGTTGAAGTTT 58.788 45.455 0.00 0.00 0.00 2.66
864 881 4.818005 GGGACGGAAAGAGTTGAAGTTTAA 59.182 41.667 0.00 0.00 0.00 1.52
865 882 5.472478 GGGACGGAAAGAGTTGAAGTTTAAT 59.528 40.000 0.00 0.00 0.00 1.40
866 883 6.652062 GGGACGGAAAGAGTTGAAGTTTAATA 59.348 38.462 0.00 0.00 0.00 0.98
867 884 7.336176 GGGACGGAAAGAGTTGAAGTTTAATAT 59.664 37.037 0.00 0.00 0.00 1.28
868 885 8.388853 GGACGGAAAGAGTTGAAGTTTAATATC 58.611 37.037 0.00 0.00 0.00 1.63
869 886 8.842358 ACGGAAAGAGTTGAAGTTTAATATCA 57.158 30.769 0.00 0.00 0.00 2.15
870 887 8.936864 ACGGAAAGAGTTGAAGTTTAATATCAG 58.063 33.333 0.00 0.00 0.00 2.90
871 888 9.151471 CGGAAAGAGTTGAAGTTTAATATCAGA 57.849 33.333 0.00 0.00 0.00 3.27
876 893 9.377312 AGAGTTGAAGTTTAATATCAGAGAAGC 57.623 33.333 0.00 0.00 0.00 3.86
877 894 9.155975 GAGTTGAAGTTTAATATCAGAGAAGCA 57.844 33.333 0.00 0.00 0.00 3.91
878 895 9.160496 AGTTGAAGTTTAATATCAGAGAAGCAG 57.840 33.333 0.00 0.00 0.00 4.24
879 896 9.155975 GTTGAAGTTTAATATCAGAGAAGCAGA 57.844 33.333 0.00 0.00 0.00 4.26
880 897 8.939201 TGAAGTTTAATATCAGAGAAGCAGAG 57.061 34.615 0.00 0.00 0.00 3.35
881 898 8.535335 TGAAGTTTAATATCAGAGAAGCAGAGT 58.465 33.333 0.00 0.00 0.00 3.24
882 899 9.377312 GAAGTTTAATATCAGAGAAGCAGAGTT 57.623 33.333 0.00 0.00 0.00 3.01
883 900 8.715191 AGTTTAATATCAGAGAAGCAGAGTTG 57.285 34.615 0.00 0.00 0.00 3.16
884 901 7.768120 AGTTTAATATCAGAGAAGCAGAGTTGG 59.232 37.037 0.00 0.00 0.00 3.77
885 902 5.690464 AATATCAGAGAAGCAGAGTTGGT 57.310 39.130 0.00 0.00 36.38 3.67
886 903 3.608316 ATCAGAGAAGCAGAGTTGGTC 57.392 47.619 0.00 0.00 32.95 4.02
887 904 1.620819 TCAGAGAAGCAGAGTTGGTCC 59.379 52.381 0.00 0.00 32.95 4.46
888 905 1.622811 CAGAGAAGCAGAGTTGGTCCT 59.377 52.381 0.00 0.00 32.95 3.85
889 906 1.622811 AGAGAAGCAGAGTTGGTCCTG 59.377 52.381 0.00 0.00 32.95 3.86
890 907 0.689623 AGAAGCAGAGTTGGTCCTGG 59.310 55.000 0.00 0.00 32.95 4.45
891 908 0.957888 GAAGCAGAGTTGGTCCTGGC 60.958 60.000 0.00 0.00 32.95 4.85
892 909 2.738213 AAGCAGAGTTGGTCCTGGCG 62.738 60.000 0.00 0.00 32.95 5.69
893 910 3.059982 CAGAGTTGGTCCTGGCGA 58.940 61.111 0.00 0.00 0.00 5.54
894 911 1.079543 CAGAGTTGGTCCTGGCGAG 60.080 63.158 0.00 0.00 0.00 5.03
895 912 2.435059 GAGTTGGTCCTGGCGAGC 60.435 66.667 0.00 0.00 39.57 5.03
899 916 4.100084 TGGTCCTGGCGAGCATGG 62.100 66.667 0.00 0.00 43.99 3.66
900 917 3.785859 GGTCCTGGCGAGCATGGA 61.786 66.667 0.00 0.85 38.92 3.41
943 960 1.270094 TGGAACACACTGTAGGCTTCG 60.270 52.381 0.00 0.00 0.00 3.79
950 967 1.134818 CACTGTAGGCTTCGGTATGCA 60.135 52.381 5.21 0.00 0.00 3.96
958 975 2.076863 GCTTCGGTATGCAAACAGAGT 58.923 47.619 0.00 0.00 0.00 3.24
968 985 7.422399 GGTATGCAAACAGAGTTGAAGTTTAA 58.578 34.615 0.00 0.00 34.03 1.52
969 986 8.082242 GGTATGCAAACAGAGTTGAAGTTTAAT 58.918 33.333 0.00 0.00 34.03 1.40
1275 1353 2.484062 CCTGTACGACGCCGGGTAT 61.484 63.158 2.18 0.00 40.78 2.73
1782 1863 2.573869 CAGGTGCAGACGGACGAT 59.426 61.111 0.00 0.00 33.50 3.73
1890 1971 1.845809 GCATATGCGCGCTAGCCTTT 61.846 55.000 33.29 10.28 41.18 3.11
1940 2021 2.742053 AGTGCACGTCCACATATTGTTC 59.258 45.455 13.03 0.00 38.18 3.18
2096 2179 1.999648 AGCTGATGTGGCCTTGAAAA 58.000 45.000 3.32 0.00 0.00 2.29
2101 2184 3.030291 TGATGTGGCCTTGAAAAACAGT 58.970 40.909 3.32 0.00 0.00 3.55
2135 2218 4.277476 TCATCCCACACAAACTTTCAACT 58.723 39.130 0.00 0.00 0.00 3.16
2165 2248 0.539051 CACCTTAGGCACCTCCTCTG 59.461 60.000 0.00 0.00 43.20 3.35
2196 2279 2.123077 CTCCCCTCGCTCATCCCT 60.123 66.667 0.00 0.00 0.00 4.20
2220 2303 1.017387 GGATGCTAAGGCGAAACAGG 58.983 55.000 0.00 0.00 42.25 4.00
2237 2320 2.091333 ACAGGTGGTGGAGGAAACAAAT 60.091 45.455 0.00 0.00 0.00 2.32
2258 2341 5.954296 ATTTGAATCTGGCGAAGGATATG 57.046 39.130 0.00 0.00 0.00 1.78
2301 2384 1.787057 ATCGAGGGTGCGACGAGATC 61.787 60.000 0.00 0.00 43.79 2.75
2337 2420 3.053693 CCAACCCCTACATCTCAATCCAA 60.054 47.826 0.00 0.00 0.00 3.53
2377 2460 4.063529 CGCTGAAGGGAAGTGCAA 57.936 55.556 0.00 0.00 0.00 4.08
2405 2488 0.831711 GGATCTGGAGGAGGAGAGGC 60.832 65.000 0.00 0.00 0.00 4.70
2471 2554 2.946988 CTACCCTCTCGCCCCATGGA 62.947 65.000 15.22 0.00 0.00 3.41
2514 2597 2.290197 TGGATGTGATTGTGCAGCTGTA 60.290 45.455 16.64 8.31 0.00 2.74
2536 2619 0.991920 AATGGGTCTGAATGGGTCGT 59.008 50.000 0.00 0.00 0.00 4.34
2548 2631 1.142748 GGGTCGTGGAGCAGATCAG 59.857 63.158 0.00 0.00 0.00 2.90
2592 2675 2.235155 TGCGTGGCTAGAAATGTAGGAA 59.765 45.455 0.00 0.00 0.00 3.36
2606 2689 2.635915 TGTAGGAAAGGACCGACATTGT 59.364 45.455 0.00 0.00 39.77 2.71
2632 2715 2.030185 GCAGTTCACGAGAGGTTCTGTA 60.030 50.000 0.00 0.00 0.00 2.74
2678 2761 6.013379 TGGACATACTCCATTCTTTGAAGACT 60.013 38.462 0.00 0.00 44.99 3.24
2734 2817 0.240945 CCGCCACCTTCACAAATCAC 59.759 55.000 0.00 0.00 0.00 3.06
2743 2826 3.425359 CCTTCACAAATCACGCAGATGAC 60.425 47.826 0.00 0.00 36.96 3.06
2770 2853 1.152830 TGGGGTTGTTGGAGAAGCC 59.847 57.895 0.00 0.00 39.77 4.35
2777 2866 2.112928 TTGGAGAAGCCGCTTGCA 59.887 55.556 11.20 0.00 44.83 4.08
2815 2925 1.293498 CTACCTCACAAGCTGCCGT 59.707 57.895 0.00 0.00 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.606673 ACTTCCTTTGCTTCCTCGCC 60.607 55.000 0.00 0.00 0.00 5.54
3 4 1.160137 CCACTTCCTTTGCTTCCTCG 58.840 55.000 0.00 0.00 0.00 4.63
4 5 1.882623 CACCACTTCCTTTGCTTCCTC 59.117 52.381 0.00 0.00 0.00 3.71
5 6 1.479389 CCACCACTTCCTTTGCTTCCT 60.479 52.381 0.00 0.00 0.00 3.36
7 8 1.338020 CACCACCACTTCCTTTGCTTC 59.662 52.381 0.00 0.00 0.00 3.86
8 9 1.402787 CACCACCACTTCCTTTGCTT 58.597 50.000 0.00 0.00 0.00 3.91
9 10 0.468029 CCACCACCACTTCCTTTGCT 60.468 55.000 0.00 0.00 0.00 3.91
10 11 1.463553 CCCACCACCACTTCCTTTGC 61.464 60.000 0.00 0.00 0.00 3.68
11 12 0.184933 TCCCACCACCACTTCCTTTG 59.815 55.000 0.00 0.00 0.00 2.77
12 13 0.478507 CTCCCACCACCACTTCCTTT 59.521 55.000 0.00 0.00 0.00 3.11
13 14 1.427072 CCTCCCACCACCACTTCCTT 61.427 60.000 0.00 0.00 0.00 3.36
14 15 1.847968 CCTCCCACCACCACTTCCT 60.848 63.158 0.00 0.00 0.00 3.36
15 16 2.757077 CCTCCCACCACCACTTCC 59.243 66.667 0.00 0.00 0.00 3.46
16 17 2.757077 CCCTCCCACCACCACTTC 59.243 66.667 0.00 0.00 0.00 3.01
17 18 2.858974 CCCCTCCCACCACCACTT 60.859 66.667 0.00 0.00 0.00 3.16
34 35 3.391665 CTCGTCCACATCTGCCCCC 62.392 68.421 0.00 0.00 0.00 5.40
35 36 2.187946 CTCGTCCACATCTGCCCC 59.812 66.667 0.00 0.00 0.00 5.80
36 37 1.142748 CTCTCGTCCACATCTGCCC 59.857 63.158 0.00 0.00 0.00 5.36
37 38 0.532573 TTCTCTCGTCCACATCTGCC 59.467 55.000 0.00 0.00 0.00 4.85
38 39 1.203523 ACTTCTCTCGTCCACATCTGC 59.796 52.381 0.00 0.00 0.00 4.26
39 40 2.416566 CCACTTCTCTCGTCCACATCTG 60.417 54.545 0.00 0.00 0.00 2.90
40 41 1.821753 CCACTTCTCTCGTCCACATCT 59.178 52.381 0.00 0.00 0.00 2.90
41 42 1.819288 TCCACTTCTCTCGTCCACATC 59.181 52.381 0.00 0.00 0.00 3.06
42 43 1.924731 TCCACTTCTCTCGTCCACAT 58.075 50.000 0.00 0.00 0.00 3.21
43 44 1.546029 CATCCACTTCTCTCGTCCACA 59.454 52.381 0.00 0.00 0.00 4.17
44 45 1.819288 TCATCCACTTCTCTCGTCCAC 59.181 52.381 0.00 0.00 0.00 4.02
45 46 2.095461 CTCATCCACTTCTCTCGTCCA 58.905 52.381 0.00 0.00 0.00 4.02
46 47 1.407258 CCTCATCCACTTCTCTCGTCC 59.593 57.143 0.00 0.00 0.00 4.79
47 48 1.202359 GCCTCATCCACTTCTCTCGTC 60.202 57.143 0.00 0.00 0.00 4.20
48 49 0.820871 GCCTCATCCACTTCTCTCGT 59.179 55.000 0.00 0.00 0.00 4.18
49 50 0.103937 GGCCTCATCCACTTCTCTCG 59.896 60.000 0.00 0.00 0.00 4.04
50 51 0.103937 CGGCCTCATCCACTTCTCTC 59.896 60.000 0.00 0.00 0.00 3.20
51 52 0.324738 TCGGCCTCATCCACTTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
52 53 0.179097 GTCGGCCTCATCCACTTCTC 60.179 60.000 0.00 0.00 0.00 2.87
53 54 1.617947 GGTCGGCCTCATCCACTTCT 61.618 60.000 0.00 0.00 0.00 2.85
54 55 1.153349 GGTCGGCCTCATCCACTTC 60.153 63.158 0.00 0.00 0.00 3.01
55 56 2.670148 GGGTCGGCCTCATCCACTT 61.670 63.158 5.77 0.00 34.45 3.16
56 57 3.083997 GGGTCGGCCTCATCCACT 61.084 66.667 5.77 0.00 34.45 4.00
57 58 4.176752 GGGGTCGGCCTCATCCAC 62.177 72.222 5.77 0.00 34.61 4.02
75 76 0.234365 TTTTTAACCACGCGTACGGC 59.766 50.000 13.44 8.47 46.04 5.68
91 92 1.940752 GCCAATGCGCATGTCCTTTTT 60.941 47.619 26.09 2.65 0.00 1.94
92 93 0.390209 GCCAATGCGCATGTCCTTTT 60.390 50.000 26.09 3.54 0.00 2.27
93 94 1.216178 GCCAATGCGCATGTCCTTT 59.784 52.632 26.09 4.42 0.00 3.11
94 95 1.679977 AGCCAATGCGCATGTCCTT 60.680 52.632 26.09 5.31 44.33 3.36
95 96 2.044650 AGCCAATGCGCATGTCCT 60.045 55.556 26.09 16.64 44.33 3.85
96 97 2.103538 CAGCCAATGCGCATGTCC 59.896 61.111 26.09 14.55 44.33 4.02
97 98 1.226491 GTCAGCCAATGCGCATGTC 60.226 57.895 26.09 15.58 44.33 3.06
98 99 2.879907 GTCAGCCAATGCGCATGT 59.120 55.556 26.09 11.44 44.33 3.21
99 100 2.277692 CGTCAGCCAATGCGCATG 60.278 61.111 26.09 17.32 44.33 4.06
100 101 4.183686 GCGTCAGCCAATGCGCAT 62.184 61.111 19.28 19.28 46.62 4.73
104 105 4.465512 CCACGCGTCAGCCAATGC 62.466 66.667 9.86 0.00 41.18 3.56
105 106 3.803082 CCCACGCGTCAGCCAATG 61.803 66.667 9.86 0.00 41.18 2.82
125 126 2.261172 TATGACGACCACCGACAGCG 62.261 60.000 0.00 0.00 44.96 5.18
126 127 0.108992 TTATGACGACCACCGACAGC 60.109 55.000 0.00 0.00 44.96 4.40
127 128 2.357327 TTTATGACGACCACCGACAG 57.643 50.000 0.00 0.00 44.96 3.51
128 129 4.158209 TCTTATTTATGACGACCACCGACA 59.842 41.667 0.00 0.00 45.70 4.35
129 130 4.501921 GTCTTATTTATGACGACCACCGAC 59.498 45.833 0.00 0.00 41.76 4.79
130 131 4.675510 GTCTTATTTATGACGACCACCGA 58.324 43.478 0.00 0.00 41.76 4.69
139 140 5.229469 CGTCACCTGTCGTCTTATTTATGAC 59.771 44.000 0.00 0.00 34.17 3.06
140 141 5.337554 CGTCACCTGTCGTCTTATTTATGA 58.662 41.667 0.00 0.00 0.00 2.15
141 142 4.503007 CCGTCACCTGTCGTCTTATTTATG 59.497 45.833 0.00 0.00 0.00 1.90
142 143 4.159135 ACCGTCACCTGTCGTCTTATTTAT 59.841 41.667 0.00 0.00 0.00 1.40
143 144 3.507233 ACCGTCACCTGTCGTCTTATTTA 59.493 43.478 0.00 0.00 0.00 1.40
144 145 2.298163 ACCGTCACCTGTCGTCTTATTT 59.702 45.455 0.00 0.00 0.00 1.40
145 146 1.891150 ACCGTCACCTGTCGTCTTATT 59.109 47.619 0.00 0.00 0.00 1.40
146 147 1.542492 ACCGTCACCTGTCGTCTTAT 58.458 50.000 0.00 0.00 0.00 1.73
147 148 1.001048 CAACCGTCACCTGTCGTCTTA 60.001 52.381 0.00 0.00 0.00 2.10
148 149 0.249322 CAACCGTCACCTGTCGTCTT 60.249 55.000 0.00 0.00 0.00 3.01
149 150 1.362717 CAACCGTCACCTGTCGTCT 59.637 57.895 0.00 0.00 0.00 4.18
150 151 1.663702 CCAACCGTCACCTGTCGTC 60.664 63.158 0.00 0.00 0.00 4.20
151 152 2.420043 CCAACCGTCACCTGTCGT 59.580 61.111 0.00 0.00 0.00 4.34
152 153 2.357034 CCCAACCGTCACCTGTCG 60.357 66.667 0.00 0.00 0.00 4.35
153 154 1.597027 CACCCAACCGTCACCTGTC 60.597 63.158 0.00 0.00 0.00 3.51
154 155 2.508928 CACCCAACCGTCACCTGT 59.491 61.111 0.00 0.00 0.00 4.00
155 156 2.281484 CCACCCAACCGTCACCTG 60.281 66.667 0.00 0.00 0.00 4.00
156 157 4.265056 GCCACCCAACCGTCACCT 62.265 66.667 0.00 0.00 0.00 4.00
228 229 3.849953 GAATGTGTCGGCGCGGAC 61.850 66.667 33.62 33.62 37.45 4.79
231 232 3.853330 CTGGAATGTGTCGGCGCG 61.853 66.667 0.00 0.00 0.00 6.86
232 233 3.499737 CCTGGAATGTGTCGGCGC 61.500 66.667 0.00 0.00 0.00 6.53
233 234 3.499737 GCCTGGAATGTGTCGGCG 61.500 66.667 0.00 0.00 0.00 6.46
234 235 3.499737 CGCCTGGAATGTGTCGGC 61.500 66.667 0.00 0.00 37.40 5.54
235 236 3.499737 GCGCCTGGAATGTGTCGG 61.500 66.667 0.00 0.00 0.00 4.79
236 237 1.647545 ATTGCGCCTGGAATGTGTCG 61.648 55.000 4.18 0.00 34.53 4.35
237 238 0.527565 AATTGCGCCTGGAATGTGTC 59.472 50.000 4.18 0.00 36.15 3.67
238 239 0.968405 AAATTGCGCCTGGAATGTGT 59.032 45.000 4.18 0.00 36.15 3.72
239 240 1.727880 CAAAATTGCGCCTGGAATGTG 59.272 47.619 4.18 0.00 36.15 3.21
240 241 1.338011 CCAAAATTGCGCCTGGAATGT 60.338 47.619 4.18 0.00 36.15 2.71
241 242 1.361793 CCAAAATTGCGCCTGGAATG 58.638 50.000 4.18 0.00 36.15 2.67
242 243 0.249955 CCCAAAATTGCGCCTGGAAT 59.750 50.000 4.18 0.00 37.81 3.01
243 244 1.118356 ACCCAAAATTGCGCCTGGAA 61.118 50.000 4.18 0.00 0.00 3.53
244 245 1.531739 GACCCAAAATTGCGCCTGGA 61.532 55.000 4.18 0.00 0.00 3.86
245 246 1.079888 GACCCAAAATTGCGCCTGG 60.080 57.895 4.18 3.67 0.00 4.45
246 247 0.388907 CTGACCCAAAATTGCGCCTG 60.389 55.000 4.18 0.00 0.00 4.85
247 248 0.539438 TCTGACCCAAAATTGCGCCT 60.539 50.000 4.18 0.00 0.00 5.52
248 249 0.316841 TTCTGACCCAAAATTGCGCC 59.683 50.000 4.18 0.00 0.00 6.53
249 250 2.147436 TTTCTGACCCAAAATTGCGC 57.853 45.000 0.00 0.00 0.00 6.09
250 251 2.995258 CCATTTCTGACCCAAAATTGCG 59.005 45.455 0.00 0.00 0.00 4.85
251 252 3.244526 ACCCATTTCTGACCCAAAATTGC 60.245 43.478 0.00 0.00 0.00 3.56
252 253 4.568956 GACCCATTTCTGACCCAAAATTG 58.431 43.478 0.00 0.00 0.00 2.32
253 254 3.258123 CGACCCATTTCTGACCCAAAATT 59.742 43.478 0.00 0.00 0.00 1.82
254 255 2.825532 CGACCCATTTCTGACCCAAAAT 59.174 45.455 0.00 0.00 0.00 1.82
255 256 2.235016 CGACCCATTTCTGACCCAAAA 58.765 47.619 0.00 0.00 0.00 2.44
256 257 1.546773 CCGACCCATTTCTGACCCAAA 60.547 52.381 0.00 0.00 0.00 3.28
257 258 0.037590 CCGACCCATTTCTGACCCAA 59.962 55.000 0.00 0.00 0.00 4.12
258 259 1.682849 CCGACCCATTTCTGACCCA 59.317 57.895 0.00 0.00 0.00 4.51
259 260 1.749258 GCCGACCCATTTCTGACCC 60.749 63.158 0.00 0.00 0.00 4.46
260 261 2.106683 CGCCGACCCATTTCTGACC 61.107 63.158 0.00 0.00 0.00 4.02
261 262 2.750888 GCGCCGACCCATTTCTGAC 61.751 63.158 0.00 0.00 0.00 3.51
262 263 2.435938 GCGCCGACCCATTTCTGA 60.436 61.111 0.00 0.00 0.00 3.27
263 264 3.864686 CGCGCCGACCCATTTCTG 61.865 66.667 0.00 0.00 0.00 3.02
285 286 3.496131 CAAATCGTGTCCGCCCGG 61.496 66.667 0.00 0.00 0.00 5.73
286 287 1.366111 ATTCAAATCGTGTCCGCCCG 61.366 55.000 0.00 0.00 0.00 6.13
287 288 0.808755 AATTCAAATCGTGTCCGCCC 59.191 50.000 0.00 0.00 0.00 6.13
288 289 2.250188 CAAATTCAAATCGTGTCCGCC 58.750 47.619 0.00 0.00 0.00 6.13
289 290 2.250188 CCAAATTCAAATCGTGTCCGC 58.750 47.619 0.00 0.00 0.00 5.54
290 291 2.227865 ACCCAAATTCAAATCGTGTCCG 59.772 45.455 0.00 0.00 0.00 4.79
291 292 3.669557 CGACCCAAATTCAAATCGTGTCC 60.670 47.826 0.00 0.00 0.00 4.02
292 293 3.488489 CGACCCAAATTCAAATCGTGTC 58.512 45.455 0.00 0.00 0.00 3.67
293 294 2.227865 CCGACCCAAATTCAAATCGTGT 59.772 45.455 0.00 0.00 0.00 4.49
294 295 2.862512 CCGACCCAAATTCAAATCGTG 58.137 47.619 0.00 0.00 0.00 4.35
295 296 1.201414 GCCGACCCAAATTCAAATCGT 59.799 47.619 0.00 0.00 0.00 3.73
296 297 1.793714 CGCCGACCCAAATTCAAATCG 60.794 52.381 0.00 0.00 0.00 3.34
297 298 1.908065 CGCCGACCCAAATTCAAATC 58.092 50.000 0.00 0.00 0.00 2.17
298 299 0.108851 GCGCCGACCCAAATTCAAAT 60.109 50.000 0.00 0.00 0.00 2.32
299 300 1.287503 GCGCCGACCCAAATTCAAA 59.712 52.632 0.00 0.00 0.00 2.69
300 301 2.958576 GCGCCGACCCAAATTCAA 59.041 55.556 0.00 0.00 0.00 2.69
301 302 3.427425 CGCGCCGACCCAAATTCA 61.427 61.111 0.00 0.00 0.00 2.57
302 303 2.973316 AACGCGCCGACCCAAATTC 61.973 57.895 5.73 0.00 0.00 2.17
303 304 2.981350 AACGCGCCGACCCAAATT 60.981 55.556 5.73 0.00 0.00 1.82
304 305 3.732892 CAACGCGCCGACCCAAAT 61.733 61.111 5.73 0.00 0.00 2.32
317 318 3.601685 AAAAGTGGCGGCCCAACG 61.602 61.111 17.97 0.00 44.33 4.10
318 319 2.028925 CAAAAGTGGCGGCCCAAC 59.971 61.111 17.97 9.12 44.33 3.77
319 320 2.443016 ACAAAAGTGGCGGCCCAA 60.443 55.556 17.97 0.00 44.33 4.12
320 321 2.909965 GACAAAAGTGGCGGCCCA 60.910 61.111 17.97 1.34 39.32 5.36
321 322 3.680786 GGACAAAAGTGGCGGCCC 61.681 66.667 17.97 8.02 31.03 5.80
322 323 4.038080 CGGACAAAAGTGGCGGCC 62.038 66.667 13.32 13.32 31.03 6.13
324 325 4.383602 CGCGGACAAAAGTGGCGG 62.384 66.667 0.00 0.00 42.86 6.13
326 327 4.700365 GGCGCGGACAAAAGTGGC 62.700 66.667 8.83 0.00 36.34 5.01
327 328 4.383602 CGGCGCGGACAAAAGTGG 62.384 66.667 9.72 0.00 0.00 4.00
328 329 3.342627 TCGGCGCGGACAAAAGTG 61.343 61.111 14.27 0.00 0.00 3.16
329 330 3.343421 GTCGGCGCGGACAAAAGT 61.343 61.111 34.74 0.00 36.91 2.66
330 331 3.342627 TGTCGGCGCGGACAAAAG 61.343 61.111 38.44 8.13 43.55 2.27
334 335 4.893601 TTTGTGTCGGCGCGGACA 62.894 61.111 37.41 37.41 44.25 4.02
335 336 4.364409 GTTTGTGTCGGCGCGGAC 62.364 66.667 33.62 33.62 37.45 4.79
338 339 3.990806 TTCGTTTGTGTCGGCGCG 61.991 61.111 0.00 0.00 0.00 6.86
339 340 2.424640 GTTCGTTTGTGTCGGCGC 60.425 61.111 0.00 0.00 0.00 6.53
340 341 2.128274 CGTTCGTTTGTGTCGGCG 60.128 61.111 0.00 0.00 0.00 6.46
341 342 2.424640 GCGTTCGTTTGTGTCGGC 60.425 61.111 0.00 0.00 0.00 5.54
342 343 2.080116 TTCGCGTTCGTTTGTGTCGG 62.080 55.000 5.77 0.00 36.96 4.79
343 344 0.978684 GTTCGCGTTCGTTTGTGTCG 60.979 55.000 5.77 0.00 36.96 4.35
344 345 0.978684 CGTTCGCGTTCGTTTGTGTC 60.979 55.000 5.77 0.00 36.96 3.67
345 346 1.013106 CGTTCGCGTTCGTTTGTGT 60.013 52.632 5.77 0.00 36.96 3.72
346 347 1.716378 CCGTTCGCGTTCGTTTGTG 60.716 57.895 19.37 5.24 39.32 3.33
347 348 1.216941 ATCCGTTCGCGTTCGTTTGT 61.217 50.000 19.37 4.97 39.32 2.83
348 349 0.784250 CATCCGTTCGCGTTCGTTTG 60.784 55.000 19.37 13.90 39.32 2.93
349 350 0.940519 TCATCCGTTCGCGTTCGTTT 60.941 50.000 19.37 7.86 39.32 3.60
350 351 0.940519 TTCATCCGTTCGCGTTCGTT 60.941 50.000 19.37 8.13 39.32 3.85
351 352 0.940519 TTTCATCCGTTCGCGTTCGT 60.941 50.000 19.37 4.59 39.32 3.85
352 353 0.368907 ATTTCATCCGTTCGCGTTCG 59.631 50.000 5.77 12.22 39.32 3.95
353 354 1.529010 CCATTTCATCCGTTCGCGTTC 60.529 52.381 5.77 0.00 39.32 3.95
354 355 0.446222 CCATTTCATCCGTTCGCGTT 59.554 50.000 5.77 0.00 39.32 4.84
355 356 1.366111 CCCATTTCATCCGTTCGCGT 61.366 55.000 5.77 0.00 39.32 6.01
356 357 1.351707 CCCATTTCATCCGTTCGCG 59.648 57.895 0.00 0.00 40.93 5.87
357 358 0.377203 GACCCATTTCATCCGTTCGC 59.623 55.000 0.00 0.00 0.00 4.70
358 359 0.650512 CGACCCATTTCATCCGTTCG 59.349 55.000 0.00 0.00 0.00 3.95
359 360 0.377203 GCGACCCATTTCATCCGTTC 59.623 55.000 0.00 0.00 0.00 3.95
360 361 1.029947 GGCGACCCATTTCATCCGTT 61.030 55.000 0.00 0.00 0.00 4.44
361 362 1.451387 GGCGACCCATTTCATCCGT 60.451 57.895 0.00 0.00 0.00 4.69
362 363 3.420943 GGCGACCCATTTCATCCG 58.579 61.111 0.00 0.00 0.00 4.18
374 375 2.700773 GCAACTCCAATGGGGCGAC 61.701 63.158 0.00 0.00 36.21 5.19
375 376 2.361104 GCAACTCCAATGGGGCGA 60.361 61.111 0.00 0.00 36.21 5.54
376 377 2.361610 AGCAACTCCAATGGGGCG 60.362 61.111 0.00 0.00 36.21 6.13
377 378 0.255890 TAGAGCAACTCCAATGGGGC 59.744 55.000 0.00 0.00 36.21 5.80
378 379 2.025887 AGTTAGAGCAACTCCAATGGGG 60.026 50.000 0.00 0.00 44.48 4.96
379 380 3.356529 AGTTAGAGCAACTCCAATGGG 57.643 47.619 0.00 0.00 44.48 4.00
388 389 2.093658 TCCAATCCGGAGTTAGAGCAAC 60.094 50.000 11.34 0.00 39.64 4.17
389 390 2.184533 TCCAATCCGGAGTTAGAGCAA 58.815 47.619 11.34 0.00 39.64 3.91
390 391 1.860641 TCCAATCCGGAGTTAGAGCA 58.139 50.000 11.34 0.00 39.64 4.26
399 400 1.860641 TAGAGCAACTCCAATCCGGA 58.139 50.000 6.61 6.61 43.61 5.14
400 401 2.093447 AGTTAGAGCAACTCCAATCCGG 60.093 50.000 0.00 0.00 44.48 5.14
401 402 3.252974 AGTTAGAGCAACTCCAATCCG 57.747 47.619 0.00 0.00 44.48 4.18
410 411 3.190874 CAGATTCGGGAGTTAGAGCAAC 58.809 50.000 0.00 0.00 37.41 4.17
411 412 2.418746 GCAGATTCGGGAGTTAGAGCAA 60.419 50.000 0.00 0.00 0.00 3.91
412 413 1.137086 GCAGATTCGGGAGTTAGAGCA 59.863 52.381 0.00 0.00 0.00 4.26
413 414 1.137086 TGCAGATTCGGGAGTTAGAGC 59.863 52.381 0.00 0.00 0.00 4.09
414 415 3.452474 CTTGCAGATTCGGGAGTTAGAG 58.548 50.000 0.00 0.00 0.00 2.43
415 416 2.168521 CCTTGCAGATTCGGGAGTTAGA 59.831 50.000 0.00 0.00 0.00 2.10
416 417 2.168521 TCCTTGCAGATTCGGGAGTTAG 59.831 50.000 0.00 0.00 0.00 2.34
424 425 1.328680 CGATTGGTCCTTGCAGATTCG 59.671 52.381 0.00 0.00 0.00 3.34
433 434 4.497291 TTTATGTAGCCGATTGGTCCTT 57.503 40.909 0.00 0.00 37.67 3.36
490 493 2.000447 GCGCCCGTAATTCTCCATATC 59.000 52.381 0.00 0.00 0.00 1.63
493 496 0.249911 GAGCGCCCGTAATTCTCCAT 60.250 55.000 2.29 0.00 0.00 3.41
494 497 1.143183 GAGCGCCCGTAATTCTCCA 59.857 57.895 2.29 0.00 0.00 3.86
495 498 0.597898 GAGAGCGCCCGTAATTCTCC 60.598 60.000 2.29 0.00 0.00 3.71
498 501 1.226888 ACGAGAGCGCCCGTAATTC 60.227 57.895 16.56 0.41 42.48 2.17
499 502 1.518572 CACGAGAGCGCCCGTAATT 60.519 57.895 17.41 0.00 42.48 1.40
500 503 1.735376 ATCACGAGAGCGCCCGTAAT 61.735 55.000 17.41 8.31 42.48 1.89
501 504 2.332362 GATCACGAGAGCGCCCGTAA 62.332 60.000 17.41 6.36 42.48 3.18
502 505 2.827190 ATCACGAGAGCGCCCGTA 60.827 61.111 17.41 8.71 42.48 4.02
553 556 6.646267 ACTGTGTTCTTGTAGTTGTTCCTTA 58.354 36.000 0.00 0.00 0.00 2.69
570 573 1.095228 CGAGTGTGCCCAACTGTGTT 61.095 55.000 0.00 0.00 0.00 3.32
572 575 0.603707 ATCGAGTGTGCCCAACTGTG 60.604 55.000 0.00 0.00 0.00 3.66
573 576 0.108585 AATCGAGTGTGCCCAACTGT 59.891 50.000 0.00 0.00 0.00 3.55
574 577 2.093306 TAATCGAGTGTGCCCAACTG 57.907 50.000 0.00 0.00 0.00 3.16
576 579 5.510671 CATTATTAATCGAGTGTGCCCAAC 58.489 41.667 0.00 0.00 0.00 3.77
577 580 4.036262 GCATTATTAATCGAGTGTGCCCAA 59.964 41.667 0.00 0.00 0.00 4.12
578 581 3.563808 GCATTATTAATCGAGTGTGCCCA 59.436 43.478 0.00 0.00 0.00 5.36
579 582 3.058224 GGCATTATTAATCGAGTGTGCCC 60.058 47.826 13.36 1.81 43.76 5.36
581 584 4.511454 TGAGGCATTATTAATCGAGTGTGC 59.489 41.667 0.00 0.00 0.00 4.57
583 586 5.934625 GGATGAGGCATTATTAATCGAGTGT 59.065 40.000 0.00 0.00 0.00 3.55
585 588 5.013079 TGGGATGAGGCATTATTAATCGAGT 59.987 40.000 0.00 0.00 0.00 4.18
586 589 5.491070 TGGGATGAGGCATTATTAATCGAG 58.509 41.667 0.00 0.00 0.00 4.04
588 591 5.491070 TCTGGGATGAGGCATTATTAATCG 58.509 41.667 0.00 0.00 0.00 3.34
602 606 4.506354 AGGATGGTGAATATCTGGGATGA 58.494 43.478 0.00 0.00 0.00 2.92
648 652 5.822519 GCTGGTGACTAATAATCCAACATGA 59.177 40.000 0.00 0.00 0.00 3.07
652 656 4.035675 GCAGCTGGTGACTAATAATCCAAC 59.964 45.833 17.12 0.00 0.00 3.77
843 860 8.932791 TGATATTAAACTTCAACTCTTTCCGTC 58.067 33.333 0.00 0.00 0.00 4.79
844 861 8.842358 TGATATTAAACTTCAACTCTTTCCGT 57.158 30.769 0.00 0.00 0.00 4.69
845 862 9.151471 TCTGATATTAAACTTCAACTCTTTCCG 57.849 33.333 0.00 0.00 0.00 4.30
850 867 9.377312 GCTTCTCTGATATTAAACTTCAACTCT 57.623 33.333 0.00 0.00 0.00 3.24
851 868 9.155975 TGCTTCTCTGATATTAAACTTCAACTC 57.844 33.333 0.00 0.00 0.00 3.01
852 869 9.160496 CTGCTTCTCTGATATTAAACTTCAACT 57.840 33.333 0.00 0.00 0.00 3.16
853 870 9.155975 TCTGCTTCTCTGATATTAAACTTCAAC 57.844 33.333 0.00 0.00 0.00 3.18
854 871 9.376075 CTCTGCTTCTCTGATATTAAACTTCAA 57.624 33.333 0.00 0.00 0.00 2.69
855 872 8.535335 ACTCTGCTTCTCTGATATTAAACTTCA 58.465 33.333 0.00 0.00 0.00 3.02
856 873 8.940768 ACTCTGCTTCTCTGATATTAAACTTC 57.059 34.615 0.00 0.00 0.00 3.01
857 874 9.160496 CAACTCTGCTTCTCTGATATTAAACTT 57.840 33.333 0.00 0.00 0.00 2.66
858 875 7.768120 CCAACTCTGCTTCTCTGATATTAAACT 59.232 37.037 0.00 0.00 0.00 2.66
859 876 7.550906 ACCAACTCTGCTTCTCTGATATTAAAC 59.449 37.037 0.00 0.00 0.00 2.01
860 877 7.624549 ACCAACTCTGCTTCTCTGATATTAAA 58.375 34.615 0.00 0.00 0.00 1.52
862 879 6.183360 GGACCAACTCTGCTTCTCTGATATTA 60.183 42.308 0.00 0.00 0.00 0.98
864 881 4.100808 GGACCAACTCTGCTTCTCTGATAT 59.899 45.833 0.00 0.00 0.00 1.63
865 882 3.449018 GGACCAACTCTGCTTCTCTGATA 59.551 47.826 0.00 0.00 0.00 2.15
866 883 2.235898 GGACCAACTCTGCTTCTCTGAT 59.764 50.000 0.00 0.00 0.00 2.90
867 884 1.620819 GGACCAACTCTGCTTCTCTGA 59.379 52.381 0.00 0.00 0.00 3.27
868 885 1.622811 AGGACCAACTCTGCTTCTCTG 59.377 52.381 0.00 0.00 0.00 3.35
869 886 1.622811 CAGGACCAACTCTGCTTCTCT 59.377 52.381 0.00 0.00 0.00 3.10
870 887 1.338579 CCAGGACCAACTCTGCTTCTC 60.339 57.143 0.00 0.00 0.00 2.87
871 888 0.689623 CCAGGACCAACTCTGCTTCT 59.310 55.000 0.00 0.00 0.00 2.85
872 889 0.957888 GCCAGGACCAACTCTGCTTC 60.958 60.000 0.00 0.00 0.00 3.86
873 890 1.073897 GCCAGGACCAACTCTGCTT 59.926 57.895 0.00 0.00 0.00 3.91
874 891 2.753029 GCCAGGACCAACTCTGCT 59.247 61.111 0.00 0.00 0.00 4.24
875 892 2.743928 CGCCAGGACCAACTCTGC 60.744 66.667 0.00 0.00 0.00 4.26
876 893 1.079543 CTCGCCAGGACCAACTCTG 60.080 63.158 0.00 0.00 0.00 3.35
877 894 2.948720 GCTCGCCAGGACCAACTCT 61.949 63.158 0.00 0.00 0.00 3.24
878 895 2.435059 GCTCGCCAGGACCAACTC 60.435 66.667 0.00 0.00 0.00 3.01
879 896 2.596851 ATGCTCGCCAGGACCAACT 61.597 57.895 0.00 0.00 0.00 3.16
880 897 2.045926 ATGCTCGCCAGGACCAAC 60.046 61.111 0.00 0.00 0.00 3.77
881 898 2.046023 CATGCTCGCCAGGACCAA 60.046 61.111 0.00 0.00 0.00 3.67
882 899 4.100084 CCATGCTCGCCAGGACCA 62.100 66.667 0.00 0.00 0.00 4.02
883 900 3.746949 CTCCATGCTCGCCAGGACC 62.747 68.421 0.00 0.00 0.00 4.46
884 901 2.202987 CTCCATGCTCGCCAGGAC 60.203 66.667 0.00 0.00 0.00 3.85
885 902 4.166888 GCTCCATGCTCGCCAGGA 62.167 66.667 0.00 0.54 38.95 3.86
894 911 2.154798 TATAGGCGACGGCTCCATGC 62.155 60.000 28.49 0.00 39.70 4.06
895 912 0.532573 ATATAGGCGACGGCTCCATG 59.467 55.000 28.49 0.00 39.70 3.66
896 913 2.139323 TATATAGGCGACGGCTCCAT 57.861 50.000 28.49 22.02 39.70 3.41
897 914 1.816835 CTTATATAGGCGACGGCTCCA 59.183 52.381 28.49 16.71 39.70 3.86
898 915 1.469423 GCTTATATAGGCGACGGCTCC 60.469 57.143 28.49 4.30 39.70 4.70
899 916 1.201647 TGCTTATATAGGCGACGGCTC 59.798 52.381 28.49 11.97 39.70 4.70
900 917 1.067776 GTGCTTATATAGGCGACGGCT 60.068 52.381 27.74 27.74 42.39 5.52
934 951 2.351726 CTGTTTGCATACCGAAGCCTAC 59.648 50.000 4.77 0.00 0.00 3.18
943 960 5.438761 AACTTCAACTCTGTTTGCATACC 57.561 39.130 4.77 0.00 0.00 2.73
958 975 9.376075 CTCTGCTTCTCTGATATTAAACTTCAA 57.624 33.333 0.00 0.00 0.00 2.69
968 985 4.100808 GGACCAACTCTGCTTCTCTGATAT 59.899 45.833 0.00 0.00 0.00 1.63
969 986 3.449018 GGACCAACTCTGCTTCTCTGATA 59.551 47.826 0.00 0.00 0.00 2.15
1335 1413 0.735978 CGCAGGTGATGACGTAGCAA 60.736 55.000 0.00 0.00 0.00 3.91
1854 1935 5.335740 GCATATGCTCGGCTAGTAGAAGTTA 60.336 44.000 20.64 0.00 38.21 2.24
1890 1971 3.447586 GGCAGATGTCTGGACTAGTGTAA 59.552 47.826 0.00 0.00 43.94 2.41
2062 2145 7.173907 GCCACATCAGCTATTTGTAAGTGATAT 59.826 37.037 0.00 0.00 0.00 1.63
2096 2179 1.557099 TGAGACATCGCCCTACTGTT 58.443 50.000 0.00 0.00 0.00 3.16
2101 2184 0.105709 TGGGATGAGACATCGCCCTA 60.106 55.000 20.22 5.25 41.18 3.53
2135 2218 1.546589 CCTAAGGTGGTGTGGCGGTA 61.547 60.000 0.00 0.00 0.00 4.02
2165 2248 1.153349 GGGAGCGGATGTTGAGGAC 60.153 63.158 0.00 0.00 0.00 3.85
2211 2294 1.966451 CCTCCACCACCTGTTTCGC 60.966 63.158 0.00 0.00 0.00 4.70
2212 2295 0.107831 TTCCTCCACCACCTGTTTCG 59.892 55.000 0.00 0.00 0.00 3.46
2220 2303 4.664150 TCAAATTTGTTTCCTCCACCAC 57.336 40.909 17.47 0.00 0.00 4.16
2237 2320 4.780815 ACATATCCTTCGCCAGATTCAAA 58.219 39.130 0.00 0.00 0.00 2.69
2258 2341 3.166679 GGAGGACCCCTATCATCTGTAC 58.833 54.545 0.00 0.00 31.76 2.90
2337 2420 0.039074 CTCTTCGAGTCGCAACTGGT 60.039 55.000 7.92 0.00 35.28 4.00
2366 2449 1.005215 CTCCTGGATTTGCACTTCCCT 59.995 52.381 10.80 0.00 0.00 4.20
2471 2554 1.866015 TCCCTCGTTGTGATCTCCAT 58.134 50.000 0.00 0.00 0.00 3.41
2514 2597 2.356125 CGACCCATTCAGACCCATTTCT 60.356 50.000 0.00 0.00 0.00 2.52
2536 2619 2.391678 TCTACATGCTGATCTGCTCCA 58.608 47.619 23.02 5.91 0.00 3.86
2548 2631 4.310769 AGTCAACACTGAGTTCTACATGC 58.689 43.478 0.00 0.00 38.74 4.06
2592 2675 1.676014 GCTGCTACAATGTCGGTCCTT 60.676 52.381 0.00 0.00 0.00 3.36
2606 2689 0.528017 CCTCTCGTGAACTGCTGCTA 59.472 55.000 0.00 0.00 0.00 3.49
2632 2715 3.790437 CTCGGCCACCTGATGCCT 61.790 66.667 2.24 0.00 45.71 4.75
2659 2742 6.874134 GCACTTAGTCTTCAAAGAATGGAGTA 59.126 38.462 3.13 0.00 35.93 2.59
2678 2761 5.192927 CCCAGTTCCTGAATATTGCACTTA 58.807 41.667 0.00 0.00 32.44 2.24
2749 2832 0.889186 CTTCTCCAACAACCCCACGG 60.889 60.000 0.00 0.00 0.00 4.94
2760 2843 0.035534 TATGCAAGCGGCTTCTCCAA 60.036 50.000 13.24 0.00 45.15 3.53
2770 2853 1.095228 ACCACCCGAATATGCAAGCG 61.095 55.000 0.00 0.00 0.00 4.68
2777 2866 0.182775 GCTTCCCACCACCCGAATAT 59.817 55.000 0.00 0.00 0.00 1.28
2815 2925 2.489971 GTCAAAGACACCATTCACCGA 58.510 47.619 0.00 0.00 32.09 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.