Multiple sequence alignment - TraesCS3A01G165300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G165300 chr3A 100.000 2707 0 0 1 2707 170392103 170389397 0.000000e+00 5000.0
1 TraesCS3A01G165300 chr3A 98.421 380 4 1 1524 1903 170310533 170310910 0.000000e+00 667.0
2 TraesCS3A01G165300 chr3A 82.595 655 77 27 1072 1700 170486463 170485820 6.590000e-151 544.0
3 TraesCS3A01G165300 chr3A 95.987 299 10 2 40 338 67439263 67438967 4.050000e-133 484.0
4 TraesCS3A01G165300 chr3B 91.680 1827 106 21 333 2130 229005569 229007378 0.000000e+00 2490.0
5 TraesCS3A01G165300 chr3B 92.509 534 22 10 2174 2707 229007488 229008003 0.000000e+00 749.0
6 TraesCS3A01G165300 chr3B 82.938 674 70 29 1058 1700 228983028 228983687 1.410000e-157 566.0
7 TraesCS3A01G165300 chr3B 95.563 293 11 2 44 336 188179629 188179339 4.080000e-128 468.0
8 TraesCS3A01G165300 chr3B 97.917 48 1 0 2130 2177 229007416 229007463 1.730000e-12 84.2
9 TraesCS3A01G165300 chr3D 92.347 1764 77 21 333 2066 157749345 157751080 0.000000e+00 2457.0
10 TraesCS3A01G165300 chr3D 94.944 534 21 4 2174 2707 157751198 157751725 0.000000e+00 832.0
11 TraesCS3A01G165300 chr3D 84.255 597 57 25 1058 1631 157659684 157660266 5.100000e-152 547.0
12 TraesCS3A01G165300 chr6D 90.213 1829 76 30 333 2130 438517858 438519614 0.000000e+00 2290.0
13 TraesCS3A01G165300 chr6D 91.260 492 25 12 2174 2663 438523225 438523700 0.000000e+00 654.0
14 TraesCS3A01G165300 chr6D 95.198 354 11 5 2354 2707 438532903 438532556 3.050000e-154 555.0
15 TraesCS3A01G165300 chrUn 98.421 380 4 1 1524 1903 293324334 293324711 0.000000e+00 667.0
16 TraesCS3A01G165300 chrUn 98.421 380 4 1 1524 1903 389790905 389791282 0.000000e+00 667.0
17 TraesCS3A01G165300 chrUn 97.403 385 8 1 1524 1908 287217087 287216705 0.000000e+00 654.0
18 TraesCS3A01G165300 chrUn 97.403 385 8 1 1524 1908 300435781 300436163 0.000000e+00 654.0
19 TraesCS3A01G165300 chrUn 94.178 292 15 2 44 334 82023025 82023315 6.880000e-121 444.0
20 TraesCS3A01G165300 chr7A 96.897 290 7 2 42 330 86246143 86246431 4.050000e-133 484.0
21 TraesCS3A01G165300 chr7A 93.960 298 16 2 36 332 671238764 671238468 1.480000e-122 449.0
22 TraesCS3A01G165300 chr7A 94.178 292 15 2 44 334 33088897 33088607 6.880000e-121 444.0
23 TraesCS3A01G165300 chr7A 81.081 444 46 24 1051 1462 732842251 732842688 1.210000e-83 320.0
24 TraesCS3A01G165300 chr7A 92.593 81 6 0 1864 1944 732845023 732845103 1.700000e-22 117.0
25 TraesCS3A01G165300 chr4A 95.548 292 12 1 41 332 628928489 628928779 1.470000e-127 466.0
26 TraesCS3A01G165300 chr2A 94.483 290 14 2 42 330 776782167 776781879 1.910000e-121 446.0
27 TraesCS3A01G165300 chr1A 92.857 294 21 0 37 330 34247761 34248054 6.930000e-116 427.0
28 TraesCS3A01G165300 chr7B 81.920 448 39 21 1049 1462 750391069 750390630 9.280000e-90 340.0
29 TraesCS3A01G165300 chr7B 91.860 86 5 2 1861 1944 750378902 750378817 4.730000e-23 119.0
30 TraesCS3A01G165300 chr7B 93.750 64 4 0 849 912 750391280 750391217 2.220000e-16 97.1
31 TraesCS3A01G165300 chr7D 80.449 445 50 23 1049 1462 633695431 633694993 3.390000e-79 305.0
32 TraesCS3A01G165300 chr7D 91.045 67 6 0 849 915 633695659 633695593 1.030000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G165300 chr3A 170389397 170392103 2706 True 5000.000000 5000 100.000000 1 2707 1 chr3A.!!$R2 2706
1 TraesCS3A01G165300 chr3A 170485820 170486463 643 True 544.000000 544 82.595000 1072 1700 1 chr3A.!!$R3 628
2 TraesCS3A01G165300 chr3B 229005569 229008003 2434 False 1107.733333 2490 94.035333 333 2707 3 chr3B.!!$F2 2374
3 TraesCS3A01G165300 chr3B 228983028 228983687 659 False 566.000000 566 82.938000 1058 1700 1 chr3B.!!$F1 642
4 TraesCS3A01G165300 chr3D 157749345 157751725 2380 False 1644.500000 2457 93.645500 333 2707 2 chr3D.!!$F2 2374
5 TraesCS3A01G165300 chr3D 157659684 157660266 582 False 547.000000 547 84.255000 1058 1631 1 chr3D.!!$F1 573
6 TraesCS3A01G165300 chr6D 438517858 438523700 5842 False 1472.000000 2290 90.736500 333 2663 2 chr6D.!!$F1 2330
7 TraesCS3A01G165300 chr7A 732842251 732845103 2852 False 218.500000 320 86.837000 1051 1944 2 chr7A.!!$F2 893
8 TraesCS3A01G165300 chr7B 750390630 750391280 650 True 218.550000 340 87.835000 849 1462 2 chr7B.!!$R2 613

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.179084 TAAGGAATTGGCTCGCCTCG 60.179 55.0 9.65 0.0 36.94 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1711 2001 0.099968 GGACGACGATGACGAATCCA 59.9 55.0 0.0 0.0 42.66 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.830114 GAATAGTGTGGCATAACTAGTGAC 57.170 41.667 15.13 2.37 32.62 3.67
24 25 5.932619 ATAGTGTGGCATAACTAGTGACA 57.067 39.130 15.42 0.00 32.62 3.58
25 26 4.617253 AGTGTGGCATAACTAGTGACAA 57.383 40.909 0.00 0.00 36.13 3.18
26 27 4.968259 AGTGTGGCATAACTAGTGACAAA 58.032 39.130 0.00 0.00 36.13 2.83
27 28 5.373222 AGTGTGGCATAACTAGTGACAAAA 58.627 37.500 0.00 0.00 36.13 2.44
28 29 5.238650 AGTGTGGCATAACTAGTGACAAAAC 59.761 40.000 0.00 0.00 36.13 2.43
29 30 5.238650 GTGTGGCATAACTAGTGACAAAACT 59.761 40.000 0.00 0.00 36.13 2.66
30 31 5.238432 TGTGGCATAACTAGTGACAAAACTG 59.762 40.000 0.00 0.00 36.13 3.16
31 32 5.468746 GTGGCATAACTAGTGACAAAACTGA 59.531 40.000 0.00 0.00 36.13 3.41
32 33 6.149474 GTGGCATAACTAGTGACAAAACTGAT 59.851 38.462 0.00 0.00 36.13 2.90
33 34 7.333423 GTGGCATAACTAGTGACAAAACTGATA 59.667 37.037 0.00 0.00 36.13 2.15
34 35 7.880713 TGGCATAACTAGTGACAAAACTGATAA 59.119 33.333 0.00 0.00 30.04 1.75
35 36 8.726988 GGCATAACTAGTGACAAAACTGATAAA 58.273 33.333 0.00 0.00 0.00 1.40
40 41 7.937649 ACTAGTGACAAAACTGATAAAAACCC 58.062 34.615 0.00 0.00 0.00 4.11
41 42 7.778382 ACTAGTGACAAAACTGATAAAAACCCT 59.222 33.333 0.00 0.00 0.00 4.34
42 43 7.418337 AGTGACAAAACTGATAAAAACCCTT 57.582 32.000 0.00 0.00 0.00 3.95
43 44 8.528044 AGTGACAAAACTGATAAAAACCCTTA 57.472 30.769 0.00 0.00 0.00 2.69
44 45 8.630037 AGTGACAAAACTGATAAAAACCCTTAG 58.370 33.333 0.00 0.00 0.00 2.18
45 46 7.865889 GTGACAAAACTGATAAAAACCCTTAGG 59.134 37.037 0.00 0.00 40.04 2.69
58 59 2.801077 CCTTAGGGGTCATTCGGTTT 57.199 50.000 0.00 0.00 0.00 3.27
59 60 2.365582 CCTTAGGGGTCATTCGGTTTG 58.634 52.381 0.00 0.00 0.00 2.93
60 61 2.365582 CTTAGGGGTCATTCGGTTTGG 58.634 52.381 0.00 0.00 0.00 3.28
61 62 1.659022 TAGGGGTCATTCGGTTTGGA 58.341 50.000 0.00 0.00 0.00 3.53
62 63 0.328258 AGGGGTCATTCGGTTTGGAG 59.672 55.000 0.00 0.00 0.00 3.86
63 64 0.679960 GGGGTCATTCGGTTTGGAGG 60.680 60.000 0.00 0.00 0.00 4.30
64 65 0.326927 GGGTCATTCGGTTTGGAGGA 59.673 55.000 0.00 0.00 0.00 3.71
65 66 1.064685 GGGTCATTCGGTTTGGAGGAT 60.065 52.381 0.00 0.00 0.00 3.24
66 67 2.620627 GGGTCATTCGGTTTGGAGGATT 60.621 50.000 0.00 0.00 0.00 3.01
67 68 3.089284 GGTCATTCGGTTTGGAGGATTT 58.911 45.455 0.00 0.00 0.00 2.17
68 69 3.128764 GGTCATTCGGTTTGGAGGATTTC 59.871 47.826 0.00 0.00 0.00 2.17
69 70 3.756434 GTCATTCGGTTTGGAGGATTTCA 59.244 43.478 0.00 0.00 0.00 2.69
70 71 4.399303 GTCATTCGGTTTGGAGGATTTCAT 59.601 41.667 0.00 0.00 0.00 2.57
71 72 5.588648 GTCATTCGGTTTGGAGGATTTCATA 59.411 40.000 0.00 0.00 0.00 2.15
72 73 6.094881 GTCATTCGGTTTGGAGGATTTCATAA 59.905 38.462 0.00 0.00 0.00 1.90
73 74 5.890424 TTCGGTTTGGAGGATTTCATAAC 57.110 39.130 0.00 0.00 0.00 1.89
74 75 3.936453 TCGGTTTGGAGGATTTCATAACG 59.064 43.478 0.00 0.00 0.00 3.18
75 76 3.687698 CGGTTTGGAGGATTTCATAACGT 59.312 43.478 0.00 0.00 0.00 3.99
76 77 4.871557 CGGTTTGGAGGATTTCATAACGTA 59.128 41.667 0.00 0.00 0.00 3.57
77 78 5.006358 CGGTTTGGAGGATTTCATAACGTAG 59.994 44.000 0.00 0.00 0.00 3.51
78 79 5.296035 GGTTTGGAGGATTTCATAACGTAGG 59.704 44.000 0.00 0.00 0.00 3.18
79 80 5.943349 TTGGAGGATTTCATAACGTAGGA 57.057 39.130 0.00 0.00 0.00 2.94
80 81 5.943349 TGGAGGATTTCATAACGTAGGAA 57.057 39.130 0.00 0.00 0.00 3.36
81 82 6.494666 TGGAGGATTTCATAACGTAGGAAT 57.505 37.500 0.00 0.00 0.00 3.01
82 83 6.895782 TGGAGGATTTCATAACGTAGGAATT 58.104 36.000 0.00 0.00 0.00 2.17
83 84 8.025270 TGGAGGATTTCATAACGTAGGAATTA 57.975 34.615 0.00 0.00 0.00 1.40
84 85 8.148351 TGGAGGATTTCATAACGTAGGAATTAG 58.852 37.037 0.00 0.00 0.00 1.73
85 86 7.603024 GGAGGATTTCATAACGTAGGAATTAGG 59.397 40.741 0.00 0.00 0.00 2.69
86 87 8.258850 AGGATTTCATAACGTAGGAATTAGGA 57.741 34.615 0.00 0.00 0.00 2.94
87 88 8.148999 AGGATTTCATAACGTAGGAATTAGGAC 58.851 37.037 0.00 0.00 0.00 3.85
88 89 8.148999 GGATTTCATAACGTAGGAATTAGGACT 58.851 37.037 0.00 0.00 0.00 3.85
91 92 8.757982 TTCATAACGTAGGAATTAGGACTAGT 57.242 34.615 0.00 0.00 0.00 2.57
92 93 9.851686 TTCATAACGTAGGAATTAGGACTAGTA 57.148 33.333 0.00 0.00 0.00 1.82
96 97 8.860780 AACGTAGGAATTAGGACTAGTATAGG 57.139 38.462 0.00 0.00 44.97 2.57
97 98 8.212259 ACGTAGGAATTAGGACTAGTATAGGA 57.788 38.462 0.00 0.00 44.97 2.94
98 99 8.664079 ACGTAGGAATTAGGACTAGTATAGGAA 58.336 37.037 0.00 0.00 44.97 3.36
99 100 9.683870 CGTAGGAATTAGGACTAGTATAGGAAT 57.316 37.037 0.00 0.00 44.97 3.01
118 119 9.740710 ATAGGAATTTTATAGGATGGTACTTGC 57.259 33.333 0.00 0.00 0.00 4.01
119 120 7.004691 AGGAATTTTATAGGATGGTACTTGCC 58.995 38.462 0.00 0.00 0.00 4.52
120 121 6.775629 GGAATTTTATAGGATGGTACTTGCCA 59.224 38.462 0.00 0.00 43.48 4.92
128 129 3.864789 ATGGTACTTGCCATCCTAAGG 57.135 47.619 0.00 0.00 45.47 2.69
129 130 2.840511 TGGTACTTGCCATCCTAAGGA 58.159 47.619 0.00 0.00 35.55 3.36
130 131 3.186283 TGGTACTTGCCATCCTAAGGAA 58.814 45.455 0.00 0.00 34.34 3.36
131 132 3.785887 TGGTACTTGCCATCCTAAGGAAT 59.214 43.478 0.00 0.00 34.34 3.01
132 133 4.229582 TGGTACTTGCCATCCTAAGGAATT 59.770 41.667 0.00 0.00 34.34 2.17
133 134 4.580580 GGTACTTGCCATCCTAAGGAATTG 59.419 45.833 0.00 0.00 34.34 2.32
134 135 3.635591 ACTTGCCATCCTAAGGAATTGG 58.364 45.455 0.00 0.00 35.56 3.16
138 139 2.498167 CCATCCTAAGGAATTGGCTCG 58.502 52.381 0.00 0.00 34.34 5.03
139 140 1.876156 CATCCTAAGGAATTGGCTCGC 59.124 52.381 0.00 0.00 34.34 5.03
140 141 0.180406 TCCTAAGGAATTGGCTCGCC 59.820 55.000 0.00 0.00 0.00 5.54
141 142 0.181350 CCTAAGGAATTGGCTCGCCT 59.819 55.000 9.65 0.00 36.94 5.52
142 143 1.587547 CTAAGGAATTGGCTCGCCTC 58.412 55.000 9.65 0.00 36.94 4.70
143 144 0.179084 TAAGGAATTGGCTCGCCTCG 60.179 55.000 9.65 0.00 36.94 4.63
144 145 2.125106 GGAATTGGCTCGCCTCGT 60.125 61.111 9.65 0.00 36.94 4.18
145 146 1.745489 GGAATTGGCTCGCCTCGTT 60.745 57.895 9.65 1.50 36.94 3.85
146 147 1.706287 GGAATTGGCTCGCCTCGTTC 61.706 60.000 9.65 9.94 36.94 3.95
147 148 1.706287 GAATTGGCTCGCCTCGTTCC 61.706 60.000 9.65 0.00 36.94 3.62
148 149 2.185310 AATTGGCTCGCCTCGTTCCT 62.185 55.000 9.65 0.00 36.94 3.36
149 150 1.327690 ATTGGCTCGCCTCGTTCCTA 61.328 55.000 9.65 0.00 36.94 2.94
150 151 2.104530 GGCTCGCCTCGTTCCTAC 59.895 66.667 0.00 0.00 0.00 3.18
162 163 3.548216 CGTTCCTACGCGTAAAATGAG 57.452 47.619 20.97 9.01 41.41 2.90
163 164 2.284855 CGTTCCTACGCGTAAAATGAGC 60.285 50.000 20.97 14.10 41.41 4.26
164 165 2.928116 GTTCCTACGCGTAAAATGAGCT 59.072 45.455 20.97 0.00 0.00 4.09
165 166 3.241067 TCCTACGCGTAAAATGAGCTT 57.759 42.857 20.97 0.00 0.00 3.74
166 167 3.592059 TCCTACGCGTAAAATGAGCTTT 58.408 40.909 20.97 0.00 0.00 3.51
167 168 3.369756 TCCTACGCGTAAAATGAGCTTTG 59.630 43.478 20.97 3.65 0.00 2.77
168 169 3.369756 CCTACGCGTAAAATGAGCTTTGA 59.630 43.478 20.97 0.00 0.00 2.69
169 170 3.455619 ACGCGTAAAATGAGCTTTGAG 57.544 42.857 11.67 0.00 0.00 3.02
170 171 2.806244 ACGCGTAAAATGAGCTTTGAGT 59.194 40.909 11.67 0.00 0.00 3.41
171 172 3.155998 CGCGTAAAATGAGCTTTGAGTG 58.844 45.455 0.00 0.00 0.00 3.51
172 173 3.492313 GCGTAAAATGAGCTTTGAGTGG 58.508 45.455 0.00 0.00 0.00 4.00
173 174 3.188460 GCGTAAAATGAGCTTTGAGTGGA 59.812 43.478 0.00 0.00 0.00 4.02
174 175 4.142600 GCGTAAAATGAGCTTTGAGTGGAT 60.143 41.667 0.00 0.00 0.00 3.41
175 176 5.327091 CGTAAAATGAGCTTTGAGTGGATG 58.673 41.667 0.00 0.00 0.00 3.51
176 177 5.106555 CGTAAAATGAGCTTTGAGTGGATGT 60.107 40.000 0.00 0.00 0.00 3.06
177 178 4.778534 AAATGAGCTTTGAGTGGATGTG 57.221 40.909 0.00 0.00 0.00 3.21
178 179 2.936919 TGAGCTTTGAGTGGATGTGT 57.063 45.000 0.00 0.00 0.00 3.72
179 180 4.558226 ATGAGCTTTGAGTGGATGTGTA 57.442 40.909 0.00 0.00 0.00 2.90
180 181 4.350368 TGAGCTTTGAGTGGATGTGTAA 57.650 40.909 0.00 0.00 0.00 2.41
181 182 4.910195 TGAGCTTTGAGTGGATGTGTAAT 58.090 39.130 0.00 0.00 0.00 1.89
182 183 5.316167 TGAGCTTTGAGTGGATGTGTAATT 58.684 37.500 0.00 0.00 0.00 1.40
183 184 5.769662 TGAGCTTTGAGTGGATGTGTAATTT 59.230 36.000 0.00 0.00 0.00 1.82
184 185 6.072508 TGAGCTTTGAGTGGATGTGTAATTTC 60.073 38.462 0.00 0.00 0.00 2.17
185 186 5.183904 AGCTTTGAGTGGATGTGTAATTTCC 59.816 40.000 0.00 0.00 0.00 3.13
186 187 5.183904 GCTTTGAGTGGATGTGTAATTTCCT 59.816 40.000 0.00 0.00 0.00 3.36
187 188 6.623767 GCTTTGAGTGGATGTGTAATTTCCTC 60.624 42.308 0.00 0.00 0.00 3.71
188 189 4.843728 TGAGTGGATGTGTAATTTCCTCC 58.156 43.478 0.00 0.00 0.00 4.30
189 190 4.288366 TGAGTGGATGTGTAATTTCCTCCA 59.712 41.667 0.00 0.00 0.00 3.86
190 191 5.222027 TGAGTGGATGTGTAATTTCCTCCAA 60.222 40.000 0.00 0.00 34.75 3.53
191 192 5.640147 AGTGGATGTGTAATTTCCTCCAAA 58.360 37.500 0.00 0.00 34.75 3.28
192 193 6.074648 AGTGGATGTGTAATTTCCTCCAAAA 58.925 36.000 0.00 0.00 34.75 2.44
193 194 6.553100 AGTGGATGTGTAATTTCCTCCAAAAA 59.447 34.615 0.00 0.00 34.75 1.94
194 195 6.645003 GTGGATGTGTAATTTCCTCCAAAAAC 59.355 38.462 0.00 0.00 34.75 2.43
195 196 6.325028 TGGATGTGTAATTTCCTCCAAAAACA 59.675 34.615 0.00 0.00 30.15 2.83
196 197 6.645003 GGATGTGTAATTTCCTCCAAAAACAC 59.355 38.462 0.00 0.00 41.26 3.32
197 198 6.531503 TGTGTAATTTCCTCCAAAAACACA 57.468 33.333 11.66 11.66 44.58 3.72
198 199 6.568869 TGTGTAATTTCCTCCAAAAACACAG 58.431 36.000 11.66 0.00 43.33 3.66
199 200 5.983118 GTGTAATTTCCTCCAAAAACACAGG 59.017 40.000 0.00 0.00 40.91 4.00
200 201 5.894393 TGTAATTTCCTCCAAAAACACAGGA 59.106 36.000 0.00 0.00 32.94 3.86
201 202 5.948742 AATTTCCTCCAAAAACACAGGAA 57.051 34.783 0.00 0.00 42.23 3.36
203 204 5.948742 TTTCCTCCAAAAACACAGGAAAT 57.051 34.783 7.73 0.00 45.86 2.17
204 205 4.935352 TCCTCCAAAAACACAGGAAATG 57.065 40.909 0.00 0.00 31.78 2.32
205 206 4.541705 TCCTCCAAAAACACAGGAAATGA 58.458 39.130 0.00 0.00 31.78 2.57
206 207 4.959210 TCCTCCAAAAACACAGGAAATGAA 59.041 37.500 0.00 0.00 31.78 2.57
207 208 5.602145 TCCTCCAAAAACACAGGAAATGAAT 59.398 36.000 0.00 0.00 31.78 2.57
208 209 6.780031 TCCTCCAAAAACACAGGAAATGAATA 59.220 34.615 0.00 0.00 31.78 1.75
209 210 7.288852 TCCTCCAAAAACACAGGAAATGAATAA 59.711 33.333 0.00 0.00 31.78 1.40
210 211 8.096414 CCTCCAAAAACACAGGAAATGAATAAT 58.904 33.333 0.00 0.00 0.00 1.28
248 249 9.720769 ATTCCTATACATATTTCCTACAAACCG 57.279 33.333 0.00 0.00 0.00 4.44
249 250 8.481492 TCCTATACATATTTCCTACAAACCGA 57.519 34.615 0.00 0.00 0.00 4.69
250 251 8.926374 TCCTATACATATTTCCTACAAACCGAA 58.074 33.333 0.00 0.00 0.00 4.30
251 252 8.985805 CCTATACATATTTCCTACAAACCGAAC 58.014 37.037 0.00 0.00 0.00 3.95
252 253 5.789710 ACATATTTCCTACAAACCGAACG 57.210 39.130 0.00 0.00 0.00 3.95
253 254 4.093850 ACATATTTCCTACAAACCGAACGC 59.906 41.667 0.00 0.00 0.00 4.84
254 255 1.950828 TTTCCTACAAACCGAACGCA 58.049 45.000 0.00 0.00 0.00 5.24
255 256 2.172851 TTCCTACAAACCGAACGCAT 57.827 45.000 0.00 0.00 0.00 4.73
256 257 1.717194 TCCTACAAACCGAACGCATC 58.283 50.000 0.00 0.00 0.00 3.91
257 258 1.274167 TCCTACAAACCGAACGCATCT 59.726 47.619 0.00 0.00 0.00 2.90
258 259 2.492881 TCCTACAAACCGAACGCATCTA 59.507 45.455 0.00 0.00 0.00 1.98
259 260 3.131577 TCCTACAAACCGAACGCATCTAT 59.868 43.478 0.00 0.00 0.00 1.98
260 261 4.338964 TCCTACAAACCGAACGCATCTATA 59.661 41.667 0.00 0.00 0.00 1.31
261 262 4.680110 CCTACAAACCGAACGCATCTATAG 59.320 45.833 0.00 0.00 0.00 1.31
262 263 3.454375 ACAAACCGAACGCATCTATAGG 58.546 45.455 0.00 0.00 0.00 2.57
263 264 3.131577 ACAAACCGAACGCATCTATAGGA 59.868 43.478 0.00 0.00 0.00 2.94
264 265 4.116961 CAAACCGAACGCATCTATAGGAA 58.883 43.478 0.00 0.00 0.00 3.36
265 266 4.395959 AACCGAACGCATCTATAGGAAA 57.604 40.909 0.00 0.00 0.00 3.13
266 267 4.602340 ACCGAACGCATCTATAGGAAAT 57.398 40.909 0.00 0.00 0.00 2.17
267 268 4.957296 ACCGAACGCATCTATAGGAAATT 58.043 39.130 0.00 0.00 0.00 1.82
268 269 5.365619 ACCGAACGCATCTATAGGAAATTT 58.634 37.500 0.00 0.00 0.00 1.82
269 270 5.820947 ACCGAACGCATCTATAGGAAATTTT 59.179 36.000 0.00 0.00 0.00 1.82
270 271 6.018180 ACCGAACGCATCTATAGGAAATTTTC 60.018 38.462 0.00 0.24 0.00 2.29
282 283 3.632333 GGAAATTTTCCTTCGGGATCCT 58.368 45.455 19.01 0.00 46.57 3.24
283 284 4.023980 GGAAATTTTCCTTCGGGATCCTT 58.976 43.478 19.01 0.00 46.57 3.36
284 285 4.142160 GGAAATTTTCCTTCGGGATCCTTG 60.142 45.833 19.01 4.88 46.57 3.61
285 286 3.739401 ATTTTCCTTCGGGATCCTTGT 57.261 42.857 12.58 0.00 44.61 3.16
286 287 3.518992 TTTTCCTTCGGGATCCTTGTT 57.481 42.857 12.58 0.00 44.61 2.83
287 288 2.781681 TTCCTTCGGGATCCTTGTTC 57.218 50.000 12.58 0.00 44.61 3.18
288 289 0.909623 TCCTTCGGGATCCTTGTTCC 59.090 55.000 12.58 0.00 39.58 3.62
289 290 0.912486 CCTTCGGGATCCTTGTTCCT 59.088 55.000 12.58 0.00 37.25 3.36
290 291 2.116238 CCTTCGGGATCCTTGTTCCTA 58.884 52.381 12.58 0.00 37.25 2.94
291 292 2.706190 CCTTCGGGATCCTTGTTCCTAT 59.294 50.000 12.58 0.00 37.25 2.57
292 293 3.495100 CCTTCGGGATCCTTGTTCCTATG 60.495 52.174 12.58 0.00 37.25 2.23
293 294 2.759355 TCGGGATCCTTGTTCCTATGT 58.241 47.619 12.58 0.00 33.53 2.29
294 295 2.434336 TCGGGATCCTTGTTCCTATGTG 59.566 50.000 12.58 0.00 33.53 3.21
295 296 2.170607 CGGGATCCTTGTTCCTATGTGT 59.829 50.000 12.58 0.00 33.53 3.72
296 297 3.370527 CGGGATCCTTGTTCCTATGTGTT 60.371 47.826 12.58 0.00 33.53 3.32
297 298 4.600062 GGGATCCTTGTTCCTATGTGTTT 58.400 43.478 12.58 0.00 33.53 2.83
298 299 4.640647 GGGATCCTTGTTCCTATGTGTTTC 59.359 45.833 12.58 0.00 33.53 2.78
299 300 4.640647 GGATCCTTGTTCCTATGTGTTTCC 59.359 45.833 3.84 0.00 0.00 3.13
300 301 4.993705 TCCTTGTTCCTATGTGTTTCCT 57.006 40.909 0.00 0.00 0.00 3.36
301 302 6.352737 GGATCCTTGTTCCTATGTGTTTCCTA 60.353 42.308 3.84 0.00 0.00 2.94
302 303 6.636454 TCCTTGTTCCTATGTGTTTCCTAT 57.364 37.500 0.00 0.00 0.00 2.57
303 304 6.414732 TCCTTGTTCCTATGTGTTTCCTATG 58.585 40.000 0.00 0.00 0.00 2.23
304 305 6.214615 TCCTTGTTCCTATGTGTTTCCTATGA 59.785 38.462 0.00 0.00 0.00 2.15
305 306 6.884295 CCTTGTTCCTATGTGTTTCCTATGAA 59.116 38.462 0.00 0.00 0.00 2.57
306 307 7.393234 CCTTGTTCCTATGTGTTTCCTATGAAA 59.607 37.037 0.00 0.00 38.14 2.69
307 308 8.698973 TTGTTCCTATGTGTTTCCTATGAAAA 57.301 30.769 0.00 0.00 41.92 2.29
308 309 8.877864 TGTTCCTATGTGTTTCCTATGAAAAT 57.122 30.769 0.00 0.00 41.92 1.82
309 310 8.956426 TGTTCCTATGTGTTTCCTATGAAAATC 58.044 33.333 0.00 0.00 41.92 2.17
310 311 8.406297 GTTCCTATGTGTTTCCTATGAAAATCC 58.594 37.037 0.00 0.00 41.92 3.01
311 312 7.872138 TCCTATGTGTTTCCTATGAAAATCCT 58.128 34.615 0.00 0.00 41.92 3.24
312 313 7.993183 TCCTATGTGTTTCCTATGAAAATCCTC 59.007 37.037 0.00 0.00 41.92 3.71
313 314 7.229506 CCTATGTGTTTCCTATGAAAATCCTCC 59.770 40.741 0.00 0.00 41.92 4.30
314 315 5.886609 TGTGTTTCCTATGAAAATCCTCCA 58.113 37.500 0.00 0.00 41.92 3.86
315 316 6.310941 TGTGTTTCCTATGAAAATCCTCCAA 58.689 36.000 0.00 0.00 41.92 3.53
316 317 6.780031 TGTGTTTCCTATGAAAATCCTCCAAA 59.220 34.615 0.00 0.00 41.92 3.28
317 318 7.090808 GTGTTTCCTATGAAAATCCTCCAAAC 58.909 38.462 0.00 0.00 41.92 2.93
318 319 6.210584 TGTTTCCTATGAAAATCCTCCAAACC 59.789 38.462 0.00 0.00 41.92 3.27
319 320 4.867086 TCCTATGAAAATCCTCCAAACCC 58.133 43.478 0.00 0.00 0.00 4.11
320 321 4.293634 TCCTATGAAAATCCTCCAAACCCA 59.706 41.667 0.00 0.00 0.00 4.51
321 322 5.022787 CCTATGAAAATCCTCCAAACCCAA 58.977 41.667 0.00 0.00 0.00 4.12
322 323 5.662657 CCTATGAAAATCCTCCAAACCCAAT 59.337 40.000 0.00 0.00 0.00 3.16
323 324 6.838612 CCTATGAAAATCCTCCAAACCCAATA 59.161 38.462 0.00 0.00 0.00 1.90
324 325 6.796785 ATGAAAATCCTCCAAACCCAATAG 57.203 37.500 0.00 0.00 0.00 1.73
325 326 5.022787 TGAAAATCCTCCAAACCCAATAGG 58.977 41.667 0.00 0.00 43.78 2.57
326 327 2.755952 ATCCTCCAAACCCAATAGGC 57.244 50.000 0.00 0.00 40.58 3.93
327 328 0.629058 TCCTCCAAACCCAATAGGCC 59.371 55.000 0.00 0.00 40.58 5.19
328 329 0.397114 CCTCCAAACCCAATAGGCCC 60.397 60.000 0.00 0.00 40.58 5.80
329 330 0.631212 CTCCAAACCCAATAGGCCCT 59.369 55.000 0.00 0.00 40.58 5.19
330 331 1.007118 CTCCAAACCCAATAGGCCCTT 59.993 52.381 0.00 0.00 40.58 3.95
331 332 2.243736 CTCCAAACCCAATAGGCCCTTA 59.756 50.000 0.00 0.00 40.58 2.69
371 372 9.113838 AGTTATGCACTTATGAACTTATCCAAG 57.886 33.333 0.00 0.00 32.57 3.61
402 403 5.061179 GCAGAGTAACAAGGACCAAAACTA 58.939 41.667 0.00 0.00 0.00 2.24
462 463 5.948992 ACAATCTTTCAACCAGTAGAAGC 57.051 39.130 0.00 0.00 0.00 3.86
468 469 3.838244 TCAACCAGTAGAAGCACAACT 57.162 42.857 0.00 0.00 0.00 3.16
472 473 5.932303 TCAACCAGTAGAAGCACAACTATTC 59.068 40.000 0.00 0.00 0.00 1.75
488 489 1.742761 ATTCGCATGACCAAGTCCTG 58.257 50.000 0.00 0.00 32.71 3.86
501 502 2.283101 TCCTGGCCAATGGTGCAC 60.283 61.111 7.01 8.80 0.00 4.57
567 570 1.675641 AAGTTGCAGCATCGTCCCC 60.676 57.895 2.55 0.00 0.00 4.81
600 603 1.867233 CTACATACACGGAATGCCTGC 59.133 52.381 0.00 0.00 0.00 4.85
609 612 0.462789 GGAATGCCTGCCCATCTTTG 59.537 55.000 0.00 0.00 0.00 2.77
665 668 6.207810 TGTTAAACCAGTGACTTTGACACTTT 59.792 34.615 0.00 0.00 44.69 2.66
666 669 5.722021 AAACCAGTGACTTTGACACTTTT 57.278 34.783 0.00 0.00 44.69 2.27
667 670 4.965119 ACCAGTGACTTTGACACTTTTC 57.035 40.909 0.00 0.00 44.69 2.29
669 672 4.396166 ACCAGTGACTTTGACACTTTTCAG 59.604 41.667 0.00 0.00 44.69 3.02
670 673 4.396166 CCAGTGACTTTGACACTTTTCAGT 59.604 41.667 0.00 0.00 44.69 3.41
697 700 4.803088 CGGATGAAGCACAAAGAAACAAAA 59.197 37.500 0.00 0.00 0.00 2.44
722 725 2.570181 CGTTCTAGGAACCGCGGT 59.430 61.111 28.70 28.70 0.00 5.68
729 732 2.094545 TCTAGGAACCGCGGTTTAACTC 60.095 50.000 41.25 28.77 38.60 3.01
854 857 2.034066 CCGGTCCAGCCAACATGT 59.966 61.111 0.00 0.00 36.97 3.21
891 894 2.812011 CTGCCACCTTATATAAACGGCC 59.188 50.000 19.34 0.00 37.25 6.13
953 956 0.510359 GCGTCTTTCTCTGCACACAG 59.490 55.000 0.00 0.00 45.95 3.66
1063 1119 7.172703 GCTTACATGTCTAAAGGTGTACACTTT 59.827 37.037 24.55 20.77 40.87 2.66
1388 1480 3.103911 GTGGACGACGACAAGCCG 61.104 66.667 0.00 0.00 0.00 5.52
1458 1583 0.802607 GAAGTACGAGAAGGCCTGCG 60.803 60.000 5.69 14.01 0.00 5.18
1712 2002 3.813596 GGCATCCAGTAAGCCGTG 58.186 61.111 0.00 0.00 38.86 4.94
1714 2004 1.220749 GCATCCAGTAAGCCGTGGA 59.779 57.895 0.00 0.00 46.93 4.02
1718 2008 0.174845 TCCAGTAAGCCGTGGATTCG 59.825 55.000 0.00 0.00 37.96 3.34
1837 2179 1.135859 CGGTTTGATGCTTCAGTCTGC 60.136 52.381 2.23 0.00 32.27 4.26
1843 2185 5.557576 TTGATGCTTCAGTCTGCCTATAT 57.442 39.130 2.23 0.00 32.27 0.86
1844 2186 6.670695 TTGATGCTTCAGTCTGCCTATATA 57.329 37.500 2.23 0.00 32.27 0.86
2040 4213 1.009829 GTGCAGACGGCTTAATCCAG 58.990 55.000 0.00 0.00 45.15 3.86
2052 4225 4.336713 GGCTTAATCCAGACAGAATTGACC 59.663 45.833 0.00 0.00 0.00 4.02
2094 4267 2.119801 ACCACAGAAGATGGATGCAC 57.880 50.000 0.00 0.00 39.87 4.57
2113 4286 4.277174 TGCACTGGTAAAACGAAATCACAT 59.723 37.500 0.00 0.00 0.00 3.21
2195 7935 6.552008 ACAAATCTCCAGATTCAAAACCCTA 58.448 36.000 2.24 0.00 43.41 3.53
2206 7946 6.719370 AGATTCAAAACCCTACACTGCATTTA 59.281 34.615 0.00 0.00 0.00 1.40
2224 7964 8.003508 TGCATTTATCGAATTATACGACTGAC 57.996 34.615 0.00 0.00 42.37 3.51
2253 7993 6.634805 TCAGAGAATAAAGTGAGCTACAAGG 58.365 40.000 0.00 0.00 0.00 3.61
2317 8057 9.775854 AAGTTCATCTCTAACCTTATGATGATG 57.224 33.333 0.00 0.00 41.73 3.07
2320 8060 8.718158 TCATCTCTAACCTTATGATGATGACT 57.282 34.615 0.00 0.00 38.67 3.41
2322 8062 9.853555 CATCTCTAACCTTATGATGATGACTAC 57.146 37.037 0.00 0.00 37.33 2.73
2340 8080 4.421948 ACTACTACATGCAACTAAGCGAC 58.578 43.478 0.00 0.00 37.31 5.19
2370 8110 2.739379 GCCGAGCCTATAAATGAGAAGC 59.261 50.000 0.00 0.00 0.00 3.86
2378 8118 4.271049 CCTATAAATGAGAAGCACACCACG 59.729 45.833 0.00 0.00 0.00 4.94
2486 8226 2.750948 TCGGAGAGTTTTACAGCACAC 58.249 47.619 0.00 0.00 0.00 3.82
2529 8269 2.724977 TGACCTGAGTTCTTGTAGCG 57.275 50.000 0.00 0.00 0.00 4.26
2588 8328 0.827368 GGTAGACCTCCAGCTCAAGG 59.173 60.000 9.02 9.02 38.70 3.61
2622 8362 1.811266 CACTTCTCATCACCGGGCG 60.811 63.158 6.32 0.00 0.00 6.13
2682 8422 2.443255 AGAATATCAGCACCCCCGAATT 59.557 45.455 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.338146 TGTCACTAGTTATGCCACACTATTC 58.662 40.000 0.00 0.00 0.00 1.75
1 2 6.294361 TGTCACTAGTTATGCCACACTATT 57.706 37.500 0.00 0.00 0.00 1.73
2 3 5.932619 TGTCACTAGTTATGCCACACTAT 57.067 39.130 0.00 0.00 0.00 2.12
3 4 5.731957 TTGTCACTAGTTATGCCACACTA 57.268 39.130 0.00 0.00 0.00 2.74
4 5 4.617253 TTGTCACTAGTTATGCCACACT 57.383 40.909 0.00 0.00 0.00 3.55
5 6 5.238650 AGTTTTGTCACTAGTTATGCCACAC 59.761 40.000 0.00 0.00 0.00 3.82
6 7 5.238432 CAGTTTTGTCACTAGTTATGCCACA 59.762 40.000 0.00 0.00 0.00 4.17
7 8 5.468746 TCAGTTTTGTCACTAGTTATGCCAC 59.531 40.000 0.00 0.00 0.00 5.01
8 9 5.616270 TCAGTTTTGTCACTAGTTATGCCA 58.384 37.500 0.00 0.00 0.00 4.92
9 10 6.743575 ATCAGTTTTGTCACTAGTTATGCC 57.256 37.500 0.00 0.00 0.00 4.40
14 15 8.410912 GGGTTTTTATCAGTTTTGTCACTAGTT 58.589 33.333 0.00 0.00 0.00 2.24
15 16 7.778382 AGGGTTTTTATCAGTTTTGTCACTAGT 59.222 33.333 0.00 0.00 0.00 2.57
16 17 8.166422 AGGGTTTTTATCAGTTTTGTCACTAG 57.834 34.615 0.00 0.00 0.00 2.57
17 18 8.528044 AAGGGTTTTTATCAGTTTTGTCACTA 57.472 30.769 0.00 0.00 0.00 2.74
18 19 7.418337 AAGGGTTTTTATCAGTTTTGTCACT 57.582 32.000 0.00 0.00 0.00 3.41
19 20 7.865889 CCTAAGGGTTTTTATCAGTTTTGTCAC 59.134 37.037 0.00 0.00 0.00 3.67
20 21 7.014808 CCCTAAGGGTTTTTATCAGTTTTGTCA 59.985 37.037 0.00 0.00 38.25 3.58
21 22 7.375834 CCCTAAGGGTTTTTATCAGTTTTGTC 58.624 38.462 0.00 0.00 38.25 3.18
22 23 7.297936 CCCTAAGGGTTTTTATCAGTTTTGT 57.702 36.000 0.00 0.00 38.25 2.83
39 40 2.365582 CAAACCGAATGACCCCTAAGG 58.634 52.381 0.00 0.00 43.78 2.69
40 41 2.026636 TCCAAACCGAATGACCCCTAAG 60.027 50.000 0.00 0.00 0.00 2.18
41 42 1.986631 TCCAAACCGAATGACCCCTAA 59.013 47.619 0.00 0.00 0.00 2.69
42 43 1.557832 CTCCAAACCGAATGACCCCTA 59.442 52.381 0.00 0.00 0.00 3.53
43 44 0.328258 CTCCAAACCGAATGACCCCT 59.672 55.000 0.00 0.00 0.00 4.79
44 45 0.679960 CCTCCAAACCGAATGACCCC 60.680 60.000 0.00 0.00 0.00 4.95
45 46 0.326927 TCCTCCAAACCGAATGACCC 59.673 55.000 0.00 0.00 0.00 4.46
46 47 2.420058 ATCCTCCAAACCGAATGACC 57.580 50.000 0.00 0.00 0.00 4.02
47 48 3.756434 TGAAATCCTCCAAACCGAATGAC 59.244 43.478 0.00 0.00 0.00 3.06
48 49 4.027674 TGAAATCCTCCAAACCGAATGA 57.972 40.909 0.00 0.00 0.00 2.57
49 50 4.989279 ATGAAATCCTCCAAACCGAATG 57.011 40.909 0.00 0.00 0.00 2.67
50 51 5.065988 CGTTATGAAATCCTCCAAACCGAAT 59.934 40.000 0.00 0.00 0.00 3.34
51 52 4.393680 CGTTATGAAATCCTCCAAACCGAA 59.606 41.667 0.00 0.00 0.00 4.30
52 53 3.936453 CGTTATGAAATCCTCCAAACCGA 59.064 43.478 0.00 0.00 0.00 4.69
53 54 3.687698 ACGTTATGAAATCCTCCAAACCG 59.312 43.478 0.00 0.00 0.00 4.44
54 55 5.296035 CCTACGTTATGAAATCCTCCAAACC 59.704 44.000 0.00 0.00 0.00 3.27
55 56 6.110707 TCCTACGTTATGAAATCCTCCAAAC 58.889 40.000 0.00 0.00 0.00 2.93
56 57 6.302535 TCCTACGTTATGAAATCCTCCAAA 57.697 37.500 0.00 0.00 0.00 3.28
57 58 5.943349 TCCTACGTTATGAAATCCTCCAA 57.057 39.130 0.00 0.00 0.00 3.53
58 59 5.943349 TTCCTACGTTATGAAATCCTCCA 57.057 39.130 0.00 0.00 0.00 3.86
59 60 7.603024 CCTAATTCCTACGTTATGAAATCCTCC 59.397 40.741 0.00 0.00 0.00 4.30
60 61 8.365647 TCCTAATTCCTACGTTATGAAATCCTC 58.634 37.037 0.00 0.00 0.00 3.71
61 62 8.148999 GTCCTAATTCCTACGTTATGAAATCCT 58.851 37.037 0.00 0.00 0.00 3.24
62 63 8.148999 AGTCCTAATTCCTACGTTATGAAATCC 58.851 37.037 0.00 0.00 0.00 3.01
65 66 9.193806 ACTAGTCCTAATTCCTACGTTATGAAA 57.806 33.333 0.00 0.00 0.00 2.69
66 67 8.757982 ACTAGTCCTAATTCCTACGTTATGAA 57.242 34.615 0.00 0.00 0.00 2.57
70 71 9.950496 CCTATACTAGTCCTAATTCCTACGTTA 57.050 37.037 0.00 0.00 0.00 3.18
71 72 8.664079 TCCTATACTAGTCCTAATTCCTACGTT 58.336 37.037 0.00 0.00 0.00 3.99
72 73 8.212259 TCCTATACTAGTCCTAATTCCTACGT 57.788 38.462 0.00 0.00 0.00 3.57
73 74 9.683870 ATTCCTATACTAGTCCTAATTCCTACG 57.316 37.037 0.00 0.00 0.00 3.51
92 93 9.740710 GCAAGTACCATCCTATAAAATTCCTAT 57.259 33.333 0.00 0.00 0.00 2.57
93 94 8.161425 GGCAAGTACCATCCTATAAAATTCCTA 58.839 37.037 0.00 0.00 0.00 2.94
94 95 7.004691 GGCAAGTACCATCCTATAAAATTCCT 58.995 38.462 0.00 0.00 0.00 3.36
95 96 6.775629 TGGCAAGTACCATCCTATAAAATTCC 59.224 38.462 0.00 0.00 33.75 3.01
96 97 7.817418 TGGCAAGTACCATCCTATAAAATTC 57.183 36.000 0.00 0.00 33.75 2.17
109 110 2.840511 TCCTTAGGATGGCAAGTACCA 58.159 47.619 0.00 0.00 45.82 3.25
110 111 3.926058 TTCCTTAGGATGGCAAGTACC 57.074 47.619 0.12 0.00 0.00 3.34
111 112 4.580580 CCAATTCCTTAGGATGGCAAGTAC 59.419 45.833 7.86 0.00 26.98 2.73
112 113 4.792068 CCAATTCCTTAGGATGGCAAGTA 58.208 43.478 7.86 0.00 26.98 2.24
113 114 3.635591 CCAATTCCTTAGGATGGCAAGT 58.364 45.455 7.86 0.00 26.98 3.16
118 119 2.498167 CGAGCCAATTCCTTAGGATGG 58.502 52.381 14.86 14.86 35.56 3.51
119 120 1.876156 GCGAGCCAATTCCTTAGGATG 59.124 52.381 0.12 0.00 0.00 3.51
120 121 1.202818 GGCGAGCCAATTCCTTAGGAT 60.203 52.381 9.58 0.00 35.81 3.24
121 122 0.180406 GGCGAGCCAATTCCTTAGGA 59.820 55.000 9.58 0.00 35.81 2.94
122 123 0.181350 AGGCGAGCCAATTCCTTAGG 59.819 55.000 17.18 0.00 38.92 2.69
123 124 1.587547 GAGGCGAGCCAATTCCTTAG 58.412 55.000 17.18 0.00 38.92 2.18
124 125 0.179084 CGAGGCGAGCCAATTCCTTA 60.179 55.000 17.18 0.00 38.92 2.69
125 126 1.450312 CGAGGCGAGCCAATTCCTT 60.450 57.895 17.18 0.00 38.92 3.36
126 127 2.185310 AACGAGGCGAGCCAATTCCT 62.185 55.000 17.18 0.00 38.92 3.36
127 128 1.706287 GAACGAGGCGAGCCAATTCC 61.706 60.000 17.18 0.00 38.92 3.01
128 129 1.706287 GGAACGAGGCGAGCCAATTC 61.706 60.000 17.18 14.85 38.92 2.17
129 130 1.745489 GGAACGAGGCGAGCCAATT 60.745 57.895 17.18 7.03 38.92 2.32
130 131 1.327690 TAGGAACGAGGCGAGCCAAT 61.328 55.000 17.18 0.00 38.92 3.16
131 132 1.980232 TAGGAACGAGGCGAGCCAA 60.980 57.895 17.18 0.00 38.92 4.52
132 133 2.361992 TAGGAACGAGGCGAGCCA 60.362 61.111 17.18 0.00 38.92 4.75
133 134 2.104530 GTAGGAACGAGGCGAGCC 59.895 66.667 5.89 5.89 0.00 4.70
143 144 2.928116 AGCTCATTTTACGCGTAGGAAC 59.072 45.455 19.61 10.91 0.00 3.62
144 145 3.241067 AGCTCATTTTACGCGTAGGAA 57.759 42.857 19.61 17.60 0.00 3.36
145 146 2.953466 AGCTCATTTTACGCGTAGGA 57.047 45.000 19.61 12.24 0.00 2.94
146 147 3.369756 TCAAAGCTCATTTTACGCGTAGG 59.630 43.478 19.61 10.54 0.00 3.18
147 148 4.091509 ACTCAAAGCTCATTTTACGCGTAG 59.908 41.667 19.61 9.64 0.00 3.51
148 149 3.991773 ACTCAAAGCTCATTTTACGCGTA 59.008 39.130 16.41 16.41 0.00 4.42
149 150 2.806244 ACTCAAAGCTCATTTTACGCGT 59.194 40.909 19.17 19.17 0.00 6.01
150 151 3.155998 CACTCAAAGCTCATTTTACGCG 58.844 45.455 3.53 3.53 0.00 6.01
151 152 3.188460 TCCACTCAAAGCTCATTTTACGC 59.812 43.478 0.00 0.00 0.00 4.42
152 153 5.106555 ACATCCACTCAAAGCTCATTTTACG 60.107 40.000 0.00 0.00 0.00 3.18
153 154 6.088824 CACATCCACTCAAAGCTCATTTTAC 58.911 40.000 0.00 0.00 0.00 2.01
154 155 5.769662 ACACATCCACTCAAAGCTCATTTTA 59.230 36.000 0.00 0.00 0.00 1.52
155 156 4.586001 ACACATCCACTCAAAGCTCATTTT 59.414 37.500 0.00 0.00 0.00 1.82
156 157 4.147321 ACACATCCACTCAAAGCTCATTT 58.853 39.130 0.00 0.00 0.00 2.32
157 158 3.759581 ACACATCCACTCAAAGCTCATT 58.240 40.909 0.00 0.00 0.00 2.57
158 159 3.430042 ACACATCCACTCAAAGCTCAT 57.570 42.857 0.00 0.00 0.00 2.90
159 160 2.936919 ACACATCCACTCAAAGCTCA 57.063 45.000 0.00 0.00 0.00 4.26
160 161 5.886960 AATTACACATCCACTCAAAGCTC 57.113 39.130 0.00 0.00 0.00 4.09
161 162 5.183904 GGAAATTACACATCCACTCAAAGCT 59.816 40.000 0.00 0.00 33.30 3.74
162 163 5.183904 AGGAAATTACACATCCACTCAAAGC 59.816 40.000 0.00 0.00 35.62 3.51
163 164 6.127897 GGAGGAAATTACACATCCACTCAAAG 60.128 42.308 0.00 0.00 37.02 2.77
164 165 5.710099 GGAGGAAATTACACATCCACTCAAA 59.290 40.000 0.00 0.00 37.02 2.69
165 166 5.222027 TGGAGGAAATTACACATCCACTCAA 60.222 40.000 8.71 0.00 41.07 3.02
166 167 4.288366 TGGAGGAAATTACACATCCACTCA 59.712 41.667 8.71 0.00 41.07 3.41
167 168 4.843728 TGGAGGAAATTACACATCCACTC 58.156 43.478 8.71 0.00 41.07 3.51
168 169 4.927267 TGGAGGAAATTACACATCCACT 57.073 40.909 8.71 0.00 41.07 4.00
169 170 5.975693 TTTGGAGGAAATTACACATCCAC 57.024 39.130 11.27 0.00 44.61 4.02
170 171 6.325028 TGTTTTTGGAGGAAATTACACATCCA 59.675 34.615 8.71 8.71 43.55 3.41
171 172 6.645003 GTGTTTTTGGAGGAAATTACACATCC 59.355 38.462 0.00 0.00 38.31 3.51
172 173 7.206687 TGTGTTTTTGGAGGAAATTACACATC 58.793 34.615 0.00 0.00 40.70 3.06
173 174 7.118496 TGTGTTTTTGGAGGAAATTACACAT 57.882 32.000 0.00 0.00 40.70 3.21
174 175 6.406400 CCTGTGTTTTTGGAGGAAATTACACA 60.406 38.462 0.00 0.00 41.91 3.72
175 176 5.983118 CCTGTGTTTTTGGAGGAAATTACAC 59.017 40.000 0.00 0.00 38.60 2.90
176 177 5.894393 TCCTGTGTTTTTGGAGGAAATTACA 59.106 36.000 0.00 0.00 31.43 2.41
177 178 6.399639 TCCTGTGTTTTTGGAGGAAATTAC 57.600 37.500 0.00 0.00 31.43 1.89
178 179 7.425224 TTTCCTGTGTTTTTGGAGGAAATTA 57.575 32.000 0.00 0.00 45.48 1.40
179 180 5.948742 TTCCTGTGTTTTTGGAGGAAATT 57.051 34.783 0.00 0.00 40.82 1.82
180 181 5.948742 TTTCCTGTGTTTTTGGAGGAAAT 57.051 34.783 0.00 0.00 45.48 2.17
182 183 4.959210 TCATTTCCTGTGTTTTTGGAGGAA 59.041 37.500 0.00 0.00 41.80 3.36
183 184 4.541705 TCATTTCCTGTGTTTTTGGAGGA 58.458 39.130 0.00 0.00 32.56 3.71
184 185 4.935352 TCATTTCCTGTGTTTTTGGAGG 57.065 40.909 0.00 0.00 0.00 4.30
193 194 9.273016 CGTAGGAATATTATTCATTTCCTGTGT 57.727 33.333 16.27 0.00 45.74 3.72
194 195 9.489084 TCGTAGGAATATTATTCATTTCCTGTG 57.511 33.333 16.27 5.70 45.74 3.66
222 223 9.720769 CGGTTTGTAGGAAATATGTATAGGAAT 57.279 33.333 0.00 0.00 0.00 3.01
223 224 8.926374 TCGGTTTGTAGGAAATATGTATAGGAA 58.074 33.333 0.00 0.00 0.00 3.36
224 225 8.481492 TCGGTTTGTAGGAAATATGTATAGGA 57.519 34.615 0.00 0.00 0.00 2.94
225 226 8.985805 GTTCGGTTTGTAGGAAATATGTATAGG 58.014 37.037 0.00 0.00 0.00 2.57
226 227 8.697067 CGTTCGGTTTGTAGGAAATATGTATAG 58.303 37.037 0.00 0.00 0.00 1.31
227 228 7.169645 GCGTTCGGTTTGTAGGAAATATGTATA 59.830 37.037 0.00 0.00 0.00 1.47
228 229 6.018507 GCGTTCGGTTTGTAGGAAATATGTAT 60.019 38.462 0.00 0.00 0.00 2.29
229 230 5.291614 GCGTTCGGTTTGTAGGAAATATGTA 59.708 40.000 0.00 0.00 0.00 2.29
230 231 4.093850 GCGTTCGGTTTGTAGGAAATATGT 59.906 41.667 0.00 0.00 0.00 2.29
231 232 4.093703 TGCGTTCGGTTTGTAGGAAATATG 59.906 41.667 0.00 0.00 0.00 1.78
232 233 4.255301 TGCGTTCGGTTTGTAGGAAATAT 58.745 39.130 0.00 0.00 0.00 1.28
233 234 3.661944 TGCGTTCGGTTTGTAGGAAATA 58.338 40.909 0.00 0.00 0.00 1.40
234 235 2.496111 TGCGTTCGGTTTGTAGGAAAT 58.504 42.857 0.00 0.00 0.00 2.17
235 236 1.950828 TGCGTTCGGTTTGTAGGAAA 58.049 45.000 0.00 0.00 0.00 3.13
236 237 2.070783 GATGCGTTCGGTTTGTAGGAA 58.929 47.619 0.00 0.00 0.00 3.36
237 238 1.274167 AGATGCGTTCGGTTTGTAGGA 59.726 47.619 0.00 0.00 0.00 2.94
238 239 1.722011 AGATGCGTTCGGTTTGTAGG 58.278 50.000 0.00 0.00 0.00 3.18
239 240 4.680110 CCTATAGATGCGTTCGGTTTGTAG 59.320 45.833 0.00 0.00 0.00 2.74
240 241 4.338964 TCCTATAGATGCGTTCGGTTTGTA 59.661 41.667 0.00 0.00 0.00 2.41
241 242 3.131577 TCCTATAGATGCGTTCGGTTTGT 59.868 43.478 0.00 0.00 0.00 2.83
242 243 3.713288 TCCTATAGATGCGTTCGGTTTG 58.287 45.455 0.00 0.00 0.00 2.93
243 244 4.395959 TTCCTATAGATGCGTTCGGTTT 57.604 40.909 0.00 0.00 0.00 3.27
244 245 4.395959 TTTCCTATAGATGCGTTCGGTT 57.604 40.909 0.00 0.00 0.00 4.44
245 246 4.602340 ATTTCCTATAGATGCGTTCGGT 57.398 40.909 0.00 0.00 0.00 4.69
246 247 5.924475 AAATTTCCTATAGATGCGTTCGG 57.076 39.130 0.00 0.00 0.00 4.30
247 248 6.363473 GGAAAATTTCCTATAGATGCGTTCG 58.637 40.000 17.01 0.00 46.57 3.95
271 272 3.134804 ACATAGGAACAAGGATCCCGAAG 59.865 47.826 8.55 0.00 37.71 3.79
272 273 3.112263 ACATAGGAACAAGGATCCCGAA 58.888 45.455 8.55 0.00 37.71 4.30
273 274 2.434336 CACATAGGAACAAGGATCCCGA 59.566 50.000 8.55 0.00 37.71 5.14
274 275 2.170607 ACACATAGGAACAAGGATCCCG 59.829 50.000 8.55 2.15 37.71 5.14
275 276 3.933861 ACACATAGGAACAAGGATCCC 57.066 47.619 8.55 0.00 37.71 3.85
276 277 4.640647 GGAAACACATAGGAACAAGGATCC 59.359 45.833 2.48 2.48 37.22 3.36
277 278 5.501156 AGGAAACACATAGGAACAAGGATC 58.499 41.667 0.00 0.00 0.00 3.36
278 279 5.520748 AGGAAACACATAGGAACAAGGAT 57.479 39.130 0.00 0.00 0.00 3.24
279 280 4.993705 AGGAAACACATAGGAACAAGGA 57.006 40.909 0.00 0.00 0.00 3.36
280 281 6.414732 TCATAGGAAACACATAGGAACAAGG 58.585 40.000 0.00 0.00 0.00 3.61
281 282 7.921786 TTCATAGGAAACACATAGGAACAAG 57.078 36.000 0.00 0.00 32.21 3.16
282 283 8.698973 TTTTCATAGGAAACACATAGGAACAA 57.301 30.769 1.27 0.00 42.48 2.83
283 284 8.877864 ATTTTCATAGGAAACACATAGGAACA 57.122 30.769 1.27 0.00 42.48 3.18
284 285 8.406297 GGATTTTCATAGGAAACACATAGGAAC 58.594 37.037 1.27 0.00 42.48 3.62
285 286 8.336235 AGGATTTTCATAGGAAACACATAGGAA 58.664 33.333 1.27 0.00 42.48 3.36
286 287 7.872138 AGGATTTTCATAGGAAACACATAGGA 58.128 34.615 1.27 0.00 42.48 2.94
287 288 7.229506 GGAGGATTTTCATAGGAAACACATAGG 59.770 40.741 1.27 0.00 42.48 2.57
288 289 7.775093 TGGAGGATTTTCATAGGAAACACATAG 59.225 37.037 1.27 0.00 42.48 2.23
289 290 7.638444 TGGAGGATTTTCATAGGAAACACATA 58.362 34.615 1.27 0.00 42.48 2.29
290 291 6.493166 TGGAGGATTTTCATAGGAAACACAT 58.507 36.000 1.27 0.00 42.48 3.21
291 292 5.886609 TGGAGGATTTTCATAGGAAACACA 58.113 37.500 1.27 0.00 42.48 3.72
292 293 6.834168 TTGGAGGATTTTCATAGGAAACAC 57.166 37.500 1.27 0.00 42.48 3.32
293 294 6.210584 GGTTTGGAGGATTTTCATAGGAAACA 59.789 38.462 1.27 0.00 42.48 2.83
294 295 6.351033 GGGTTTGGAGGATTTTCATAGGAAAC 60.351 42.308 1.27 0.00 42.48 2.78
295 296 5.719563 GGGTTTGGAGGATTTTCATAGGAAA 59.280 40.000 0.00 0.00 41.13 3.13
296 297 5.222442 TGGGTTTGGAGGATTTTCATAGGAA 60.222 40.000 0.00 0.00 0.00 3.36
297 298 4.293634 TGGGTTTGGAGGATTTTCATAGGA 59.706 41.667 0.00 0.00 0.00 2.94
298 299 4.609301 TGGGTTTGGAGGATTTTCATAGG 58.391 43.478 0.00 0.00 0.00 2.57
299 300 6.796785 ATTGGGTTTGGAGGATTTTCATAG 57.203 37.500 0.00 0.00 0.00 2.23
300 301 6.838612 CCTATTGGGTTTGGAGGATTTTCATA 59.161 38.462 0.00 0.00 0.00 2.15
301 302 5.662657 CCTATTGGGTTTGGAGGATTTTCAT 59.337 40.000 0.00 0.00 0.00 2.57
302 303 5.022787 CCTATTGGGTTTGGAGGATTTTCA 58.977 41.667 0.00 0.00 0.00 2.69
303 304 4.141937 GCCTATTGGGTTTGGAGGATTTTC 60.142 45.833 0.00 0.00 37.43 2.29
304 305 3.774766 GCCTATTGGGTTTGGAGGATTTT 59.225 43.478 0.00 0.00 37.43 1.82
305 306 3.374764 GCCTATTGGGTTTGGAGGATTT 58.625 45.455 0.00 0.00 37.43 2.17
306 307 2.359249 GGCCTATTGGGTTTGGAGGATT 60.359 50.000 0.00 0.00 37.43 3.01
307 308 1.217942 GGCCTATTGGGTTTGGAGGAT 59.782 52.381 0.00 0.00 37.43 3.24
308 309 0.629058 GGCCTATTGGGTTTGGAGGA 59.371 55.000 0.00 0.00 37.43 3.71
309 310 0.397114 GGGCCTATTGGGTTTGGAGG 60.397 60.000 0.84 0.00 37.43 4.30
310 311 0.631212 AGGGCCTATTGGGTTTGGAG 59.369 55.000 2.82 0.00 37.43 3.86
311 312 1.089123 AAGGGCCTATTGGGTTTGGA 58.911 50.000 6.41 0.00 37.43 3.53
312 313 2.838637 TAAGGGCCTATTGGGTTTGG 57.161 50.000 6.41 0.00 37.43 3.28
313 314 3.708451 ACTTAAGGGCCTATTGGGTTTG 58.292 45.455 6.41 0.00 37.43 2.93
314 315 4.413641 AACTTAAGGGCCTATTGGGTTT 57.586 40.909 6.41 0.00 37.43 3.27
315 316 4.413641 AAACTTAAGGGCCTATTGGGTT 57.586 40.909 6.41 5.49 37.43 4.11
316 317 4.413641 AAAACTTAAGGGCCTATTGGGT 57.586 40.909 6.41 0.00 37.43 4.51
317 318 5.023452 AGAAAAACTTAAGGGCCTATTGGG 58.977 41.667 6.41 0.00 38.36 4.12
318 319 6.398095 CAAGAAAAACTTAAGGGCCTATTGG 58.602 40.000 6.41 0.00 37.03 3.16
319 320 5.869344 GCAAGAAAAACTTAAGGGCCTATTG 59.131 40.000 6.41 1.79 37.03 1.90
320 321 5.780282 AGCAAGAAAAACTTAAGGGCCTATT 59.220 36.000 6.41 0.02 37.03 1.73
321 322 5.333581 AGCAAGAAAAACTTAAGGGCCTAT 58.666 37.500 6.41 0.00 37.03 2.57
322 323 4.736473 AGCAAGAAAAACTTAAGGGCCTA 58.264 39.130 6.41 0.00 37.03 3.93
323 324 3.576861 AGCAAGAAAAACTTAAGGGCCT 58.423 40.909 0.00 0.00 37.03 5.19
324 325 4.523173 ACTAGCAAGAAAAACTTAAGGGCC 59.477 41.667 7.53 0.00 37.03 5.80
325 326 5.707242 ACTAGCAAGAAAAACTTAAGGGC 57.293 39.130 7.53 0.00 37.03 5.19
326 327 7.755373 GCATAACTAGCAAGAAAAACTTAAGGG 59.245 37.037 7.53 0.00 37.03 3.95
327 328 8.296713 TGCATAACTAGCAAGAAAAACTTAAGG 58.703 33.333 7.53 0.00 39.39 2.69
328 329 9.118236 GTGCATAACTAGCAAGAAAAACTTAAG 57.882 33.333 0.00 0.00 44.64 1.85
329 330 8.846211 AGTGCATAACTAGCAAGAAAAACTTAA 58.154 29.630 0.00 0.00 44.64 1.85
330 331 8.391075 AGTGCATAACTAGCAAGAAAAACTTA 57.609 30.769 0.00 0.00 44.64 2.24
331 332 7.277174 AGTGCATAACTAGCAAGAAAAACTT 57.723 32.000 0.00 0.00 44.64 2.66
371 372 2.293399 CCTTGTTACTCTGCACCAAACC 59.707 50.000 0.00 0.00 0.00 3.27
402 403 0.252197 GCACCATAGTTCCCGGTTCT 59.748 55.000 0.00 0.00 0.00 3.01
462 463 3.436704 ACTTGGTCATGCGAATAGTTGTG 59.563 43.478 0.00 0.00 0.00 3.33
468 469 2.419990 CCAGGACTTGGTCATGCGAATA 60.420 50.000 6.79 0.00 42.06 1.75
472 473 3.895025 CCAGGACTTGGTCATGCG 58.105 61.111 6.79 0.00 42.06 4.73
501 502 7.034685 TCAATCAAATCAACTCATATGCCAG 57.965 36.000 0.00 0.00 0.00 4.85
567 570 4.051922 GTGTATGTAGCCGGAGAAATCAG 58.948 47.826 5.05 0.00 0.00 2.90
609 612 3.933740 CGTTTGCGTTTCAATCATCAC 57.066 42.857 0.00 0.00 34.12 3.06
665 668 2.036604 TGTGCTTCATCCGTACACTGAA 59.963 45.455 0.00 0.00 32.49 3.02
666 669 1.616374 TGTGCTTCATCCGTACACTGA 59.384 47.619 0.00 0.00 32.49 3.41
667 670 2.078849 TGTGCTTCATCCGTACACTG 57.921 50.000 0.00 0.00 32.49 3.66
669 672 3.064207 TCTTTGTGCTTCATCCGTACAC 58.936 45.455 0.00 0.00 0.00 2.90
670 673 3.394674 TCTTTGTGCTTCATCCGTACA 57.605 42.857 0.00 0.00 0.00 2.90
697 700 0.037232 GTTCCTAGAACGCACTGCCT 60.037 55.000 0.00 0.00 0.00 4.75
722 725 7.712264 CAAGATGTTGCAATTTGGAGTTAAA 57.288 32.000 0.59 0.00 0.00 1.52
891 894 0.391395 CAGAGCCTGTCTGCTTCCAG 60.391 60.000 0.00 0.00 46.41 3.86
1063 1119 7.328277 AGTGAAAACACAAGCATTTAGTACA 57.672 32.000 0.00 0.00 0.00 2.90
1090 1150 4.290711 TCTTCTGCAGGTCATTCATTCA 57.709 40.909 15.13 0.00 0.00 2.57
1091 1151 4.025061 CGATCTTCTGCAGGTCATTCATTC 60.025 45.833 15.13 0.00 30.94 2.67
1092 1152 3.875727 CGATCTTCTGCAGGTCATTCATT 59.124 43.478 15.13 0.00 30.94 2.57
1093 1153 3.118482 ACGATCTTCTGCAGGTCATTCAT 60.118 43.478 15.13 0.00 30.94 2.57
1388 1480 1.557371 CAGGGGGTCTTCTTCTCCTTC 59.443 57.143 0.00 0.00 0.00 3.46
1458 1583 1.067213 AGCCTTCTCGCACTTCTCTTC 60.067 52.381 0.00 0.00 0.00 2.87
1525 1800 2.443390 AGCGGTACCCATAGCCGT 60.443 61.111 6.25 0.00 46.41 5.68
1711 2001 0.099968 GGACGACGATGACGAATCCA 59.900 55.000 0.00 0.00 42.66 3.41
1712 2002 0.381089 AGGACGACGATGACGAATCC 59.619 55.000 0.00 0.00 42.66 3.01
1714 2004 0.525668 GCAGGACGACGATGACGAAT 60.526 55.000 0.00 0.00 42.66 3.34
1715 2005 1.154093 GCAGGACGACGATGACGAA 60.154 57.895 0.00 0.00 42.66 3.85
1717 2007 1.869574 CTGCAGGACGACGATGACG 60.870 63.158 5.57 0.00 45.75 4.35
1718 2008 1.517257 CCTGCAGGACGACGATGAC 60.517 63.158 29.88 0.00 37.39 3.06
1986 4147 9.374838 CTGCCTTATTTCAGCTCATTTTATTTT 57.625 29.630 0.00 0.00 0.00 1.82
1987 4148 8.534496 ACTGCCTTATTTCAGCTCATTTTATTT 58.466 29.630 0.00 0.00 33.80 1.40
1988 4149 7.977853 CACTGCCTTATTTCAGCTCATTTTATT 59.022 33.333 0.00 0.00 33.80 1.40
1989 4150 7.123247 ACACTGCCTTATTTCAGCTCATTTTAT 59.877 33.333 0.00 0.00 33.80 1.40
2040 4213 3.486383 TCCAGTTTGGGTCAATTCTGTC 58.514 45.455 0.00 0.00 38.32 3.51
2052 4225 3.077359 GTTCTCCTGTCATCCAGTTTGG 58.923 50.000 0.00 0.00 39.74 3.28
2094 4267 6.241207 ACTCATGTGATTTCGTTTTACCAG 57.759 37.500 0.94 0.00 0.00 4.00
2113 4286 7.719193 TGAAAACAGTATGATCCTTCAAACTCA 59.281 33.333 0.00 0.00 39.69 3.41
2195 7935 7.652105 AGTCGTATAATTCGATAAATGCAGTGT 59.348 33.333 0.00 0.00 39.45 3.55
2206 7946 3.004002 TGCGGTCAGTCGTATAATTCGAT 59.996 43.478 0.00 0.00 39.45 3.59
2224 7964 3.247173 GCTCACTTTATTCTCTGATGCGG 59.753 47.826 0.00 0.00 0.00 5.69
2253 7993 6.501781 GGATGATGATCAAAGTTTGTCATCC 58.498 40.000 30.58 30.58 44.83 3.51
2316 8056 4.157105 TCGCTTAGTTGCATGTAGTAGTCA 59.843 41.667 0.00 0.00 0.00 3.41
2317 8057 4.499758 GTCGCTTAGTTGCATGTAGTAGTC 59.500 45.833 0.00 0.00 0.00 2.59
2320 8060 3.429822 GGGTCGCTTAGTTGCATGTAGTA 60.430 47.826 0.00 0.00 0.00 1.82
2322 8062 1.933853 GGGTCGCTTAGTTGCATGTAG 59.066 52.381 0.00 0.00 0.00 2.74
2352 8092 4.513318 GGTGTGCTTCTCATTTATAGGCTC 59.487 45.833 0.00 0.00 0.00 4.70
2362 8102 1.070758 AGTTCGTGGTGTGCTTCTCAT 59.929 47.619 0.00 0.00 0.00 2.90
2370 8110 3.026630 ACATACAGAGTTCGTGGTGTG 57.973 47.619 0.00 0.00 0.00 3.82
2378 8118 5.880332 TGGAAAAGGCATACATACAGAGTTC 59.120 40.000 0.00 0.00 0.00 3.01
2486 8226 6.106648 TCAGGAAGCTGATTACCTCATATG 57.893 41.667 0.00 0.00 32.10 1.78
2529 8269 2.512515 GGAGCAGGTCATGACGGC 60.513 66.667 25.29 25.29 34.04 5.68
2588 8328 1.818785 GTGGAGGCAGCAGCAGATC 60.819 63.158 2.65 0.00 44.61 2.75
2682 8422 1.381599 GATTGGGCTTGGGCATGGA 60.382 57.895 0.00 0.00 40.87 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.