Multiple sequence alignment - TraesCS3A01G164300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G164300 chr3A 100.000 2366 0 0 1 2366 169225560 169227925 0.000000e+00 4370
1 TraesCS3A01G164300 chr3A 96.935 261 8 0 319 579 385575326 385575066 2.790000e-119 438
2 TraesCS3A01G164300 chr3B 92.075 1754 80 21 647 2366 235920048 235918320 0.000000e+00 2414
3 TraesCS3A01G164300 chr3B 87.085 271 35 0 321 591 593826728 593826998 8.210000e-80 307
4 TraesCS3A01G164300 chr3D 93.009 1316 36 22 577 1868 158459161 158457878 0.000000e+00 1869
5 TraesCS3A01G164300 chr3D 85.565 478 33 13 1893 2366 158457884 158457439 3.560000e-128 468
6 TraesCS3A01G164300 chr2A 96.565 262 7 1 321 580 118226236 118226497 1.300000e-117 433
7 TraesCS3A01G164300 chr2A 96.139 259 8 2 319 577 752288032 752287776 2.810000e-114 422
8 TraesCS3A01G164300 chr2A 96.279 215 7 1 117 330 61973356 61973570 3.740000e-93 351
9 TraesCS3A01G164300 chr2A 96.610 118 4 0 1 118 167340694 167340811 1.860000e-46 196
10 TraesCS3A01G164300 chr2A 95.082 122 6 0 1 122 755331402 755331281 2.400000e-45 193
11 TraesCS3A01G164300 chr4B 95.896 268 8 2 319 583 451550091 451549824 4.670000e-117 431
12 TraesCS3A01G164300 chr6B 95.817 263 11 0 319 581 418799540 418799278 2.170000e-115 425
13 TraesCS3A01G164300 chr6B 87.576 330 40 1 117 445 216876936 216876607 4.770000e-102 381
14 TraesCS3A01G164300 chr7D 94.545 275 13 2 319 592 125335088 125334815 7.820000e-115 424
15 TraesCS3A01G164300 chr7D 89.416 274 28 1 319 592 228296084 228295812 6.260000e-91 344
16 TraesCS3A01G164300 chr5A 96.139 259 10 0 319 577 608041446 608041704 7.820000e-115 424
17 TraesCS3A01G164300 chr5A 95.817 263 9 1 319 579 641061814 641062076 7.820000e-115 424
18 TraesCS3A01G164300 chr7A 94.505 273 15 0 319 591 657888055 657887783 2.810000e-114 422
19 TraesCS3A01G164300 chr7A 96.729 214 6 1 117 329 638749841 638749628 2.890000e-94 355
20 TraesCS3A01G164300 chr1A 97.196 214 5 1 117 329 444351220 444351433 6.220000e-96 361
21 TraesCS3A01G164300 chr1A 97.170 212 5 1 117 327 247782697 247782486 8.040000e-95 357
22 TraesCS3A01G164300 chr1A 88.256 281 29 3 319 599 49308791 49308515 1.360000e-87 333
23 TraesCS3A01G164300 chr1A 95.798 119 5 0 1 119 354686393 354686511 2.400000e-45 193
24 TraesCS3A01G164300 chr6A 94.737 228 8 3 117 340 9015934 9016161 3.740000e-93 351
25 TraesCS3A01G164300 chr6A 95.902 122 5 0 1 122 68996454 68996333 5.160000e-47 198
26 TraesCS3A01G164300 chr7B 90.566 265 21 4 279 541 677053235 677052973 4.840000e-92 348
27 TraesCS3A01G164300 chr1B 93.913 230 10 3 117 342 362095 362324 6.260000e-91 344
28 TraesCS3A01G164300 chr1B 86.891 267 33 1 327 591 183965660 183965394 4.940000e-77 298
29 TraesCS3A01G164300 chr1B 83.333 300 38 7 287 577 671860365 671860661 1.390000e-67 267
30 TraesCS3A01G164300 chr5B 93.506 231 12 2 117 344 477556108 477555878 8.100000e-90 340
31 TraesCS3A01G164300 chr5B 87.197 289 31 5 287 571 709832607 709832321 8.160000e-85 324
32 TraesCS3A01G164300 chr5B 84.868 304 39 7 20 319 620065840 620065540 1.370000e-77 300
33 TraesCS3A01G164300 chr5B 85.268 224 24 9 377 596 519758523 519758741 3.060000e-54 222
34 TraesCS3A01G164300 chr2D 89.552 268 27 1 319 586 179472318 179472584 2.910000e-89 339
35 TraesCS3A01G164300 chr2D 85.374 294 38 5 289 577 542782365 542782072 1.370000e-77 300
36 TraesCS3A01G164300 chr2D 85.714 273 39 0 319 591 499108364 499108092 2.980000e-74 289
37 TraesCS3A01G164300 chr5D 84.241 349 47 6 235 577 124408448 124408794 1.360000e-87 333
38 TraesCS3A01G164300 chr5D 79.733 375 57 14 147 508 38224033 38223665 1.090000e-63 254
39 TraesCS3A01G164300 chr4A 95.935 123 4 1 1 122 137534714 137534836 5.160000e-47 198
40 TraesCS3A01G164300 chr4A 95.868 121 5 0 1 121 140976855 140976975 1.860000e-46 196
41 TraesCS3A01G164300 chr4A 95.868 121 5 0 1 121 233991084 233991204 1.860000e-46 196
42 TraesCS3A01G164300 chr4A 95.833 120 5 0 1 120 589491054 589490935 6.670000e-46 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G164300 chr3A 169225560 169227925 2365 False 4370.0 4370 100.000 1 2366 1 chr3A.!!$F1 2365
1 TraesCS3A01G164300 chr3B 235918320 235920048 1728 True 2414.0 2414 92.075 647 2366 1 chr3B.!!$R1 1719
2 TraesCS3A01G164300 chr3D 158457439 158459161 1722 True 1168.5 1869 89.287 577 2366 2 chr3D.!!$R1 1789

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
361 362 0.109597 CTTGGGACTCGCAAACATGC 60.11 55.0 9.59 0.0 35.96 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 1996 1.070786 GGGCTTCCAACTCGTGTCA 59.929 57.895 0.0 0.0 0.0 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 7.912056 CTTGGTCAAAGTTAGATGAGATTGA 57.088 36.000 0.00 0.00 0.00 2.57
72 73 7.672983 TTGGTCAAAGTTAGATGAGATTGAC 57.327 36.000 7.68 7.68 43.51 3.18
73 74 7.009179 TGGTCAAAGTTAGATGAGATTGACT 57.991 36.000 13.97 0.00 43.66 3.41
74 75 7.453393 TGGTCAAAGTTAGATGAGATTGACTT 58.547 34.615 13.97 0.00 43.66 3.01
75 76 7.604164 TGGTCAAAGTTAGATGAGATTGACTTC 59.396 37.037 13.97 2.43 43.66 3.01
76 77 7.604164 GGTCAAAGTTAGATGAGATTGACTTCA 59.396 37.037 13.97 0.00 43.66 3.02
77 78 8.655092 GTCAAAGTTAGATGAGATTGACTTCAG 58.345 37.037 8.70 0.00 41.92 3.02
78 79 8.588472 TCAAAGTTAGATGAGATTGACTTCAGA 58.412 33.333 0.00 0.00 0.00 3.27
79 80 8.655092 CAAAGTTAGATGAGATTGACTTCAGAC 58.345 37.037 0.00 0.00 0.00 3.51
80 81 7.473735 AGTTAGATGAGATTGACTTCAGACA 57.526 36.000 0.00 0.00 0.00 3.41
81 82 7.901029 AGTTAGATGAGATTGACTTCAGACAA 58.099 34.615 0.00 0.00 34.59 3.18
82 83 8.370940 AGTTAGATGAGATTGACTTCAGACAAA 58.629 33.333 0.00 0.00 33.89 2.83
83 84 8.439286 GTTAGATGAGATTGACTTCAGACAAAC 58.561 37.037 0.00 0.00 33.89 2.93
84 85 5.936956 AGATGAGATTGACTTCAGACAAACC 59.063 40.000 0.00 0.00 33.89 3.27
85 86 5.296151 TGAGATTGACTTCAGACAAACCT 57.704 39.130 0.00 0.00 33.89 3.50
86 87 6.419484 TGAGATTGACTTCAGACAAACCTA 57.581 37.500 0.00 0.00 33.89 3.08
87 88 6.223852 TGAGATTGACTTCAGACAAACCTAC 58.776 40.000 0.00 0.00 33.89 3.18
88 89 6.042093 TGAGATTGACTTCAGACAAACCTACT 59.958 38.462 0.00 0.00 33.89 2.57
89 90 7.232737 TGAGATTGACTTCAGACAAACCTACTA 59.767 37.037 0.00 0.00 33.89 1.82
90 91 8.140112 AGATTGACTTCAGACAAACCTACTAT 57.860 34.615 0.00 0.00 33.89 2.12
91 92 8.037758 AGATTGACTTCAGACAAACCTACTATG 58.962 37.037 0.00 0.00 33.89 2.23
92 93 5.479306 TGACTTCAGACAAACCTACTATGC 58.521 41.667 0.00 0.00 0.00 3.14
93 94 5.011635 TGACTTCAGACAAACCTACTATGCA 59.988 40.000 0.00 0.00 0.00 3.96
94 95 5.482908 ACTTCAGACAAACCTACTATGCAG 58.517 41.667 0.00 0.00 0.00 4.41
95 96 5.246203 ACTTCAGACAAACCTACTATGCAGA 59.754 40.000 0.00 0.00 0.00 4.26
96 97 5.330455 TCAGACAAACCTACTATGCAGAG 57.670 43.478 6.84 6.84 0.00 3.35
97 98 4.772624 TCAGACAAACCTACTATGCAGAGT 59.227 41.667 19.34 19.34 0.00 3.24
98 99 5.949952 TCAGACAAACCTACTATGCAGAGTA 59.050 40.000 19.51 19.51 0.00 2.59
99 100 6.436218 TCAGACAAACCTACTATGCAGAGTAA 59.564 38.462 20.85 6.57 31.57 2.24
100 101 7.039293 TCAGACAAACCTACTATGCAGAGTAAA 60.039 37.037 20.85 3.26 31.57 2.01
101 102 7.602644 CAGACAAACCTACTATGCAGAGTAAAA 59.397 37.037 20.85 2.53 31.57 1.52
102 103 8.154856 AGACAAACCTACTATGCAGAGTAAAAA 58.845 33.333 20.85 2.16 31.57 1.94
103 104 8.324163 ACAAACCTACTATGCAGAGTAAAAAG 57.676 34.615 20.85 11.65 31.57 2.27
104 105 7.390718 ACAAACCTACTATGCAGAGTAAAAAGG 59.609 37.037 21.24 21.24 31.57 3.11
105 106 6.869206 ACCTACTATGCAGAGTAAAAAGGA 57.131 37.500 27.03 6.39 31.57 3.36
106 107 6.641474 ACCTACTATGCAGAGTAAAAAGGAC 58.359 40.000 27.03 0.00 31.57 3.85
107 108 6.049790 CCTACTATGCAGAGTAAAAAGGACC 58.950 44.000 20.85 0.00 31.57 4.46
108 109 4.504858 ACTATGCAGAGTAAAAAGGACCG 58.495 43.478 13.36 0.00 0.00 4.79
109 110 2.178912 TGCAGAGTAAAAAGGACCGG 57.821 50.000 0.00 0.00 0.00 5.28
110 111 1.695242 TGCAGAGTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
111 112 2.289444 TGCAGAGTAAAAAGGACCGGAG 60.289 50.000 9.46 0.00 0.00 4.63
128 129 4.258702 CGGAGGAAGTACATCCCTAATG 57.741 50.000 13.46 0.00 45.47 1.90
129 130 3.555168 CGGAGGAAGTACATCCCTAATGC 60.555 52.174 13.46 0.00 45.47 3.56
130 131 3.391296 GGAGGAAGTACATCCCTAATGCA 59.609 47.826 13.46 0.00 42.86 3.96
131 132 4.042187 GGAGGAAGTACATCCCTAATGCAT 59.958 45.833 13.46 0.00 42.86 3.96
132 133 5.248477 GGAGGAAGTACATCCCTAATGCATA 59.752 44.000 13.46 0.00 42.86 3.14
133 134 6.365970 AGGAAGTACATCCCTAATGCATAG 57.634 41.667 13.46 0.00 40.59 2.23
134 135 5.846714 AGGAAGTACATCCCTAATGCATAGT 59.153 40.000 13.46 0.00 40.59 2.12
135 136 7.016914 AGGAAGTACATCCCTAATGCATAGTA 58.983 38.462 13.46 0.00 40.59 1.82
136 137 7.680310 AGGAAGTACATCCCTAATGCATAGTAT 59.320 37.037 13.46 0.00 40.59 2.12
137 138 7.982354 GGAAGTACATCCCTAATGCATAGTATC 59.018 40.741 5.81 0.00 39.12 2.24
138 139 8.435931 AAGTACATCCCTAATGCATAGTATCA 57.564 34.615 0.00 0.00 39.12 2.15
139 140 8.615360 AGTACATCCCTAATGCATAGTATCAT 57.385 34.615 0.00 0.00 39.12 2.45
140 141 9.715119 AGTACATCCCTAATGCATAGTATCATA 57.285 33.333 0.00 0.00 39.12 2.15
143 144 8.996655 ACATCCCTAATGCATAGTATCATATGT 58.003 33.333 0.00 0.63 39.12 2.29
144 145 9.842775 CATCCCTAATGCATAGTATCATATGTT 57.157 33.333 0.00 0.00 35.87 2.71
145 146 9.842775 ATCCCTAATGCATAGTATCATATGTTG 57.157 33.333 0.00 0.00 35.87 3.33
146 147 8.267183 TCCCTAATGCATAGTATCATATGTTGG 58.733 37.037 0.00 0.00 35.87 3.77
147 148 8.049117 CCCTAATGCATAGTATCATATGTTGGT 58.951 37.037 0.00 0.00 35.87 3.67
158 159 9.997172 AGTATCATATGTTGGTATCATAGAGGA 57.003 33.333 1.90 0.00 32.43 3.71
160 161 8.907829 ATCATATGTTGGTATCATAGAGGACT 57.092 34.615 1.90 0.00 32.43 3.85
161 162 9.997172 ATCATATGTTGGTATCATAGAGGACTA 57.003 33.333 1.90 0.00 32.43 2.59
162 163 9.997172 TCATATGTTGGTATCATAGAGGACTAT 57.003 33.333 1.90 0.00 39.59 2.12
179 180 9.445878 AGAGGACTATATTTATTGTCATGCATG 57.554 33.333 21.07 21.07 39.24 4.06
180 181 9.440773 GAGGACTATATTTATTGTCATGCATGA 57.559 33.333 25.42 25.42 39.24 3.07
191 192 3.056588 TCATGCATGACACAAGTAGCA 57.943 42.857 25.42 0.00 35.51 3.49
192 193 2.743664 TCATGCATGACACAAGTAGCAC 59.256 45.455 25.42 0.00 34.41 4.40
193 194 2.252976 TGCATGACACAAGTAGCACA 57.747 45.000 0.00 0.00 0.00 4.57
194 195 2.781923 TGCATGACACAAGTAGCACAT 58.218 42.857 0.00 0.00 0.00 3.21
195 196 2.743664 TGCATGACACAAGTAGCACATC 59.256 45.455 0.00 0.00 0.00 3.06
196 197 2.743664 GCATGACACAAGTAGCACATCA 59.256 45.455 0.00 0.00 0.00 3.07
197 198 3.376234 GCATGACACAAGTAGCACATCAT 59.624 43.478 0.00 0.00 0.00 2.45
198 199 4.142534 GCATGACACAAGTAGCACATCATT 60.143 41.667 0.00 0.00 0.00 2.57
199 200 5.620654 GCATGACACAAGTAGCACATCATTT 60.621 40.000 0.00 0.00 0.00 2.32
200 201 6.403527 GCATGACACAAGTAGCACATCATTTA 60.404 38.462 0.00 0.00 0.00 1.40
201 202 7.529158 CATGACACAAGTAGCACATCATTTAA 58.471 34.615 0.00 0.00 0.00 1.52
202 203 7.686438 TGACACAAGTAGCACATCATTTAAT 57.314 32.000 0.00 0.00 0.00 1.40
203 204 8.785329 TGACACAAGTAGCACATCATTTAATA 57.215 30.769 0.00 0.00 0.00 0.98
204 205 9.394767 TGACACAAGTAGCACATCATTTAATAT 57.605 29.630 0.00 0.00 0.00 1.28
205 206 9.655769 GACACAAGTAGCACATCATTTAATATG 57.344 33.333 0.00 0.00 0.00 1.78
206 207 9.394767 ACACAAGTAGCACATCATTTAATATGA 57.605 29.630 0.00 0.00 0.00 2.15
211 212 9.371136 AGTAGCACATCATTTAATATGATACGG 57.629 33.333 10.72 6.78 36.69 4.02
212 213 9.151471 GTAGCACATCATTTAATATGATACGGT 57.849 33.333 10.72 11.66 36.69 4.83
214 215 9.890629 AGCACATCATTTAATATGATACGGTAT 57.109 29.630 0.00 0.00 36.69 2.73
240 241 9.585369 TCATGATATGATACTCAAGTCTCTCTT 57.415 33.333 0.00 0.00 33.59 2.85
243 244 9.639563 TGATATGATACTCAAGTCTCTCTTTCT 57.360 33.333 0.00 0.00 33.63 2.52
246 247 7.767250 TGATACTCAAGTCTCTCTTTCTTCA 57.233 36.000 0.00 0.00 33.63 3.02
247 248 8.359875 TGATACTCAAGTCTCTCTTTCTTCAT 57.640 34.615 0.00 0.00 33.63 2.57
248 249 8.811017 TGATACTCAAGTCTCTCTTTCTTCATT 58.189 33.333 0.00 0.00 33.63 2.57
249 250 9.651913 GATACTCAAGTCTCTCTTTCTTCATTT 57.348 33.333 0.00 0.00 33.63 2.32
261 262 9.685276 TCTCTTTCTTCATTTAATTCTATGCCA 57.315 29.630 0.00 0.00 0.00 4.92
262 263 9.727627 CTCTTTCTTCATTTAATTCTATGCCAC 57.272 33.333 0.00 0.00 0.00 5.01
263 264 8.686334 TCTTTCTTCATTTAATTCTATGCCACC 58.314 33.333 0.00 0.00 0.00 4.61
264 265 8.593945 TTTCTTCATTTAATTCTATGCCACCT 57.406 30.769 0.00 0.00 0.00 4.00
265 266 7.807977 TCTTCATTTAATTCTATGCCACCTC 57.192 36.000 0.00 0.00 0.00 3.85
266 267 7.345691 TCTTCATTTAATTCTATGCCACCTCA 58.654 34.615 0.00 0.00 0.00 3.86
267 268 8.000709 TCTTCATTTAATTCTATGCCACCTCAT 58.999 33.333 0.00 0.00 0.00 2.90
268 269 7.750229 TCATTTAATTCTATGCCACCTCATC 57.250 36.000 0.00 0.00 0.00 2.92
269 270 7.289310 TCATTTAATTCTATGCCACCTCATCA 58.711 34.615 0.00 0.00 0.00 3.07
270 271 7.779326 TCATTTAATTCTATGCCACCTCATCAA 59.221 33.333 0.00 0.00 0.00 2.57
271 272 7.953005 TTTAATTCTATGCCACCTCATCAAA 57.047 32.000 0.00 0.00 0.00 2.69
272 273 7.953005 TTAATTCTATGCCACCTCATCAAAA 57.047 32.000 0.00 0.00 0.00 2.44
273 274 8.537728 TTAATTCTATGCCACCTCATCAAAAT 57.462 30.769 0.00 0.00 0.00 1.82
274 275 7.427989 AATTCTATGCCACCTCATCAAAATT 57.572 32.000 0.00 0.00 0.00 1.82
275 276 5.840243 TCTATGCCACCTCATCAAAATTG 57.160 39.130 0.00 0.00 0.00 2.32
276 277 2.747396 TGCCACCTCATCAAAATTGC 57.253 45.000 0.00 0.00 0.00 3.56
277 278 2.250031 TGCCACCTCATCAAAATTGCT 58.750 42.857 0.00 0.00 0.00 3.91
278 279 2.633967 TGCCACCTCATCAAAATTGCTT 59.366 40.909 0.00 0.00 0.00 3.91
279 280 3.831333 TGCCACCTCATCAAAATTGCTTA 59.169 39.130 0.00 0.00 0.00 3.09
280 281 4.082081 TGCCACCTCATCAAAATTGCTTAG 60.082 41.667 0.00 0.00 0.00 2.18
281 282 4.082026 GCCACCTCATCAAAATTGCTTAGT 60.082 41.667 0.00 0.00 0.00 2.24
282 283 5.567423 GCCACCTCATCAAAATTGCTTAGTT 60.567 40.000 0.00 0.00 0.00 2.24
283 284 5.865552 CCACCTCATCAAAATTGCTTAGTTG 59.134 40.000 0.00 0.00 0.00 3.16
284 285 5.865552 CACCTCATCAAAATTGCTTAGTTGG 59.134 40.000 0.00 0.00 0.00 3.77
285 286 4.866486 CCTCATCAAAATTGCTTAGTTGGC 59.134 41.667 0.00 0.00 0.00 4.52
286 287 5.465532 TCATCAAAATTGCTTAGTTGGCA 57.534 34.783 0.00 0.00 37.97 4.92
287 288 6.040209 TCATCAAAATTGCTTAGTTGGCAT 57.960 33.333 0.00 0.00 39.54 4.40
288 289 5.870433 TCATCAAAATTGCTTAGTTGGCATG 59.130 36.000 0.00 0.00 39.54 4.06
289 290 3.995705 TCAAAATTGCTTAGTTGGCATGC 59.004 39.130 9.90 9.90 39.54 4.06
290 291 3.681593 AAATTGCTTAGTTGGCATGCA 57.318 38.095 21.36 2.54 39.54 3.96
291 292 3.899052 AATTGCTTAGTTGGCATGCAT 57.101 38.095 21.36 4.57 39.54 3.96
292 293 2.658373 TTGCTTAGTTGGCATGCATG 57.342 45.000 22.70 22.70 39.54 4.06
293 294 1.836802 TGCTTAGTTGGCATGCATGA 58.163 45.000 30.64 7.50 34.56 3.07
294 295 2.380941 TGCTTAGTTGGCATGCATGAT 58.619 42.857 30.64 11.73 34.56 2.45
295 296 3.553904 TGCTTAGTTGGCATGCATGATA 58.446 40.909 30.64 14.66 34.56 2.15
296 297 3.316029 TGCTTAGTTGGCATGCATGATAC 59.684 43.478 30.64 21.28 34.56 2.24
297 298 3.567164 GCTTAGTTGGCATGCATGATACT 59.433 43.478 30.64 26.11 0.00 2.12
298 299 4.756642 GCTTAGTTGGCATGCATGATACTA 59.243 41.667 30.64 25.19 0.00 1.82
299 300 5.334414 GCTTAGTTGGCATGCATGATACTAC 60.334 44.000 30.64 22.16 0.00 2.73
300 301 3.480470 AGTTGGCATGCATGATACTACC 58.520 45.455 30.64 19.65 0.00 3.18
301 302 3.137176 AGTTGGCATGCATGATACTACCT 59.863 43.478 30.64 11.98 0.00 3.08
302 303 4.347876 AGTTGGCATGCATGATACTACCTA 59.652 41.667 30.64 13.97 0.00 3.08
303 304 5.013495 AGTTGGCATGCATGATACTACCTAT 59.987 40.000 30.64 7.77 0.00 2.57
304 305 4.835678 TGGCATGCATGATACTACCTATG 58.164 43.478 30.64 0.23 0.00 2.23
305 306 4.531732 TGGCATGCATGATACTACCTATGA 59.468 41.667 30.64 1.93 0.00 2.15
306 307 5.190330 TGGCATGCATGATACTACCTATGAT 59.810 40.000 30.64 0.00 0.00 2.45
307 308 6.383726 TGGCATGCATGATACTACCTATGATA 59.616 38.462 30.64 0.87 0.00 2.15
308 309 6.703607 GGCATGCATGATACTACCTATGATAC 59.296 42.308 30.64 5.71 0.00 2.24
309 310 7.418368 GGCATGCATGATACTACCTATGATACT 60.418 40.741 30.64 0.00 0.00 2.12
310 311 7.651304 GCATGCATGATACTACCTATGATACTC 59.349 40.741 30.64 1.38 0.00 2.59
311 312 8.911965 CATGCATGATACTACCTATGATACTCT 58.088 37.037 22.59 0.00 0.00 3.24
312 313 8.512966 TGCATGATACTACCTATGATACTCTC 57.487 38.462 0.00 0.00 0.00 3.20
313 314 8.109634 TGCATGATACTACCTATGATACTCTCA 58.890 37.037 0.00 0.00 38.53 3.27
314 315 9.130661 GCATGATACTACCTATGATACTCTCAT 57.869 37.037 0.00 0.00 46.49 2.90
319 320 7.925043 ACTACCTATGATACTCTCATTACGG 57.075 40.000 0.00 0.00 42.07 4.02
320 321 6.885376 ACTACCTATGATACTCTCATTACGGG 59.115 42.308 0.00 0.00 42.07 5.28
321 322 5.642165 ACCTATGATACTCTCATTACGGGT 58.358 41.667 0.00 0.00 42.07 5.28
322 323 6.787170 ACCTATGATACTCTCATTACGGGTA 58.213 40.000 0.00 0.00 42.07 3.69
323 324 6.885376 ACCTATGATACTCTCATTACGGGTAG 59.115 42.308 0.00 0.00 42.07 3.18
324 325 5.646577 ATGATACTCTCATTACGGGTAGC 57.353 43.478 0.00 0.00 42.07 3.58
325 326 3.825014 TGATACTCTCATTACGGGTAGCC 59.175 47.826 0.00 0.00 0.00 3.93
326 327 2.456073 ACTCTCATTACGGGTAGCCT 57.544 50.000 9.73 0.00 0.00 4.58
327 328 3.589951 ACTCTCATTACGGGTAGCCTA 57.410 47.619 9.73 0.00 0.00 3.93
328 329 3.907221 ACTCTCATTACGGGTAGCCTAA 58.093 45.455 9.73 7.28 0.00 2.69
329 330 3.635836 ACTCTCATTACGGGTAGCCTAAC 59.364 47.826 9.73 0.00 0.00 2.34
330 331 3.890147 CTCTCATTACGGGTAGCCTAACT 59.110 47.826 9.73 0.00 0.00 2.24
331 332 5.052693 TCTCATTACGGGTAGCCTAACTA 57.947 43.478 9.73 0.00 0.00 2.24
332 333 5.068636 TCTCATTACGGGTAGCCTAACTAG 58.931 45.833 9.73 7.89 0.00 2.57
333 334 4.796606 TCATTACGGGTAGCCTAACTAGT 58.203 43.478 9.73 0.67 0.00 2.57
334 335 5.940617 TCATTACGGGTAGCCTAACTAGTA 58.059 41.667 9.73 0.00 0.00 1.82
335 336 6.546484 TCATTACGGGTAGCCTAACTAGTAT 58.454 40.000 9.73 0.00 0.00 2.12
336 337 6.656693 TCATTACGGGTAGCCTAACTAGTATC 59.343 42.308 9.73 0.00 0.00 2.24
337 338 4.443978 ACGGGTAGCCTAACTAGTATCA 57.556 45.455 9.73 0.00 0.00 2.15
338 339 4.995536 ACGGGTAGCCTAACTAGTATCAT 58.004 43.478 9.73 0.00 0.00 2.45
339 340 6.131972 ACGGGTAGCCTAACTAGTATCATA 57.868 41.667 9.73 0.00 0.00 2.15
340 341 6.729428 ACGGGTAGCCTAACTAGTATCATAT 58.271 40.000 9.73 0.00 0.00 1.78
341 342 7.865820 ACGGGTAGCCTAACTAGTATCATATA 58.134 38.462 9.73 0.00 0.00 0.86
342 343 7.772757 ACGGGTAGCCTAACTAGTATCATATAC 59.227 40.741 9.73 0.00 0.00 1.47
343 344 7.992033 CGGGTAGCCTAACTAGTATCATATACT 59.008 40.741 9.73 5.04 0.00 2.12
344 345 9.697990 GGGTAGCCTAACTAGTATCATATACTT 57.302 37.037 2.95 0.00 0.00 2.24
347 348 8.596781 AGCCTAACTAGTATCATATACTTGGG 57.403 38.462 0.00 1.29 0.00 4.12
348 349 8.399529 AGCCTAACTAGTATCATATACTTGGGA 58.600 37.037 0.00 0.00 0.00 4.37
349 350 8.468399 GCCTAACTAGTATCATATACTTGGGAC 58.532 40.741 0.00 0.00 0.00 4.46
350 351 9.756571 CCTAACTAGTATCATATACTTGGGACT 57.243 37.037 0.00 0.00 0.00 3.85
352 353 7.925043 ACTAGTATCATATACTTGGGACTCG 57.075 40.000 4.99 0.00 0.00 4.18
353 354 5.646577 AGTATCATATACTTGGGACTCGC 57.353 43.478 0.00 0.00 0.00 5.03
354 355 5.077564 AGTATCATATACTTGGGACTCGCA 58.922 41.667 0.00 0.00 0.00 5.10
355 356 4.955811 ATCATATACTTGGGACTCGCAA 57.044 40.909 8.17 8.17 35.16 4.85
356 357 4.746535 TCATATACTTGGGACTCGCAAA 57.253 40.909 9.59 0.00 35.96 3.68
357 358 4.439057 TCATATACTTGGGACTCGCAAAC 58.561 43.478 9.59 0.00 35.96 2.93
358 359 2.851263 ATACTTGGGACTCGCAAACA 57.149 45.000 9.59 1.72 35.96 2.83
359 360 2.851263 TACTTGGGACTCGCAAACAT 57.149 45.000 9.59 2.18 35.96 2.71
360 361 1.238439 ACTTGGGACTCGCAAACATG 58.762 50.000 9.59 0.00 35.96 3.21
361 362 0.109597 CTTGGGACTCGCAAACATGC 60.110 55.000 9.59 0.00 35.96 4.06
362 363 0.537143 TTGGGACTCGCAAACATGCT 60.537 50.000 6.08 0.00 33.52 3.79
363 364 0.537143 TGGGACTCGCAAACATGCTT 60.537 50.000 0.00 0.00 0.00 3.91
364 365 1.271108 TGGGACTCGCAAACATGCTTA 60.271 47.619 0.00 0.00 0.00 3.09
365 366 1.130561 GGGACTCGCAAACATGCTTAC 59.869 52.381 0.00 0.00 0.00 2.34
366 367 1.804151 GGACTCGCAAACATGCTTACA 59.196 47.619 0.00 0.00 0.00 2.41
367 368 2.420022 GGACTCGCAAACATGCTTACAT 59.580 45.455 0.00 0.00 36.79 2.29
381 382 5.991933 TGCTTACATGGCAGGAAATTAAA 57.008 34.783 5.99 0.00 34.56 1.52
382 383 5.964758 TGCTTACATGGCAGGAAATTAAAG 58.035 37.500 5.99 1.02 34.56 1.85
383 384 5.714333 TGCTTACATGGCAGGAAATTAAAGA 59.286 36.000 5.99 0.00 34.56 2.52
384 385 6.210385 TGCTTACATGGCAGGAAATTAAAGAA 59.790 34.615 5.99 0.00 34.56 2.52
385 386 6.753744 GCTTACATGGCAGGAAATTAAAGAAG 59.246 38.462 5.99 0.00 0.00 2.85
386 387 7.362920 GCTTACATGGCAGGAAATTAAAGAAGA 60.363 37.037 5.99 0.00 0.00 2.87
387 388 6.521151 ACATGGCAGGAAATTAAAGAAGAG 57.479 37.500 5.99 0.00 0.00 2.85
388 389 6.248433 ACATGGCAGGAAATTAAAGAAGAGA 58.752 36.000 5.99 0.00 0.00 3.10
389 390 6.376581 ACATGGCAGGAAATTAAAGAAGAGAG 59.623 38.462 5.99 0.00 0.00 3.20
390 391 6.126863 TGGCAGGAAATTAAAGAAGAGAGA 57.873 37.500 0.00 0.00 0.00 3.10
391 392 6.176183 TGGCAGGAAATTAAAGAAGAGAGAG 58.824 40.000 0.00 0.00 0.00 3.20
392 393 6.013379 TGGCAGGAAATTAAAGAAGAGAGAGA 60.013 38.462 0.00 0.00 0.00 3.10
393 394 6.538381 GGCAGGAAATTAAAGAAGAGAGAGAG 59.462 42.308 0.00 0.00 0.00 3.20
394 395 7.327214 GCAGGAAATTAAAGAAGAGAGAGAGA 58.673 38.462 0.00 0.00 0.00 3.10
395 396 7.492344 GCAGGAAATTAAAGAAGAGAGAGAGAG 59.508 40.741 0.00 0.00 0.00 3.20
396 397 8.531146 CAGGAAATTAAAGAAGAGAGAGAGAGT 58.469 37.037 0.00 0.00 0.00 3.24
397 398 8.749354 AGGAAATTAAAGAAGAGAGAGAGAGTC 58.251 37.037 0.00 0.00 0.00 3.36
398 399 8.527810 GGAAATTAAAGAAGAGAGAGAGAGTCA 58.472 37.037 0.00 0.00 0.00 3.41
402 403 9.920946 ATTAAAGAAGAGAGAGAGAGTCATAGT 57.079 33.333 0.00 0.00 0.00 2.12
405 406 8.732746 AAGAAGAGAGAGAGAGTCATAGTAAC 57.267 38.462 0.00 0.00 0.00 2.50
406 407 7.857456 AGAAGAGAGAGAGAGTCATAGTAACA 58.143 38.462 0.00 0.00 0.00 2.41
407 408 8.494433 AGAAGAGAGAGAGAGTCATAGTAACAT 58.506 37.037 0.00 0.00 0.00 2.71
408 409 9.772973 GAAGAGAGAGAGAGTCATAGTAACATA 57.227 37.037 0.00 0.00 0.00 2.29
409 410 9.778741 AAGAGAGAGAGAGTCATAGTAACATAG 57.221 37.037 0.00 0.00 0.00 2.23
410 411 8.375506 AGAGAGAGAGAGTCATAGTAACATAGG 58.624 40.741 0.00 0.00 0.00 2.57
411 412 8.041143 AGAGAGAGAGTCATAGTAACATAGGT 57.959 38.462 0.00 0.00 0.00 3.08
412 413 9.161572 AGAGAGAGAGTCATAGTAACATAGGTA 57.838 37.037 0.00 0.00 0.00 3.08
413 414 9.431887 GAGAGAGAGTCATAGTAACATAGGTAG 57.568 40.741 0.00 0.00 0.00 3.18
414 415 9.161572 AGAGAGAGTCATAGTAACATAGGTAGA 57.838 37.037 0.00 0.00 0.00 2.59
415 416 9.953565 GAGAGAGTCATAGTAACATAGGTAGAT 57.046 37.037 0.00 0.00 0.00 1.98
418 419 9.962809 AGAGTCATAGTAACATAGGTAGATACC 57.037 37.037 0.43 0.43 46.82 2.73
454 455 7.496529 AATGTTATGGTACTATGTGTCATGC 57.503 36.000 1.31 0.00 0.00 4.06
455 456 5.983540 TGTTATGGTACTATGTGTCATGCA 58.016 37.500 1.31 0.00 0.00 3.96
456 457 6.591001 TGTTATGGTACTATGTGTCATGCAT 58.409 36.000 1.31 0.00 0.00 3.96
457 458 6.482973 TGTTATGGTACTATGTGTCATGCATG 59.517 38.462 21.07 21.07 0.00 4.06
458 459 3.807553 TGGTACTATGTGTCATGCATGG 58.192 45.455 25.97 10.76 0.00 3.66
459 460 2.549754 GGTACTATGTGTCATGCATGGC 59.450 50.000 24.40 24.40 0.00 4.40
460 461 2.423446 ACTATGTGTCATGCATGGCA 57.577 45.000 29.45 29.45 44.86 4.92
461 462 2.725637 ACTATGTGTCATGCATGGCAA 58.274 42.857 34.01 23.37 44.94 4.52
462 463 3.293337 ACTATGTGTCATGCATGGCAAT 58.707 40.909 34.01 27.34 44.94 3.56
463 464 4.463070 ACTATGTGTCATGCATGGCAATA 58.537 39.130 34.01 27.05 44.94 1.90
464 465 4.888823 ACTATGTGTCATGCATGGCAATAA 59.111 37.500 34.01 22.53 44.94 1.40
465 466 4.739587 ATGTGTCATGCATGGCAATAAA 57.260 36.364 34.01 20.14 44.94 1.40
466 467 4.739587 TGTGTCATGCATGGCAATAAAT 57.260 36.364 34.01 0.00 44.94 1.40
467 468 5.848833 TGTGTCATGCATGGCAATAAATA 57.151 34.783 34.01 14.13 44.94 1.40
468 469 6.218108 TGTGTCATGCATGGCAATAAATAA 57.782 33.333 34.01 7.61 44.94 1.40
469 470 6.274579 TGTGTCATGCATGGCAATAAATAAG 58.725 36.000 34.01 0.13 44.94 1.73
470 471 6.096564 TGTGTCATGCATGGCAATAAATAAGA 59.903 34.615 34.01 6.14 44.94 2.10
471 472 6.418819 GTGTCATGCATGGCAATAAATAAGAC 59.581 38.462 34.01 14.70 44.94 3.01
472 473 5.922544 GTCATGCATGGCAATAAATAAGACC 59.077 40.000 26.04 0.00 43.62 3.85
473 474 5.597594 TCATGCATGGCAATAAATAAGACCA 59.402 36.000 25.97 0.00 43.62 4.02
474 475 5.261209 TGCATGGCAATAAATAAGACCAC 57.739 39.130 0.00 0.00 34.76 4.16
475 476 4.099266 TGCATGGCAATAAATAAGACCACC 59.901 41.667 0.00 0.00 34.76 4.61
476 477 4.342092 GCATGGCAATAAATAAGACCACCT 59.658 41.667 0.00 0.00 0.00 4.00
477 478 5.534654 GCATGGCAATAAATAAGACCACCTA 59.465 40.000 0.00 0.00 0.00 3.08
478 479 6.209391 GCATGGCAATAAATAAGACCACCTAT 59.791 38.462 0.00 0.00 0.00 2.57
479 480 7.596494 CATGGCAATAAATAAGACCACCTATG 58.404 38.462 0.00 0.00 0.00 2.23
480 481 6.905736 TGGCAATAAATAAGACCACCTATGA 58.094 36.000 0.00 0.00 0.00 2.15
481 482 7.526041 TGGCAATAAATAAGACCACCTATGAT 58.474 34.615 0.00 0.00 0.00 2.45
482 483 8.664992 TGGCAATAAATAAGACCACCTATGATA 58.335 33.333 0.00 0.00 0.00 2.15
483 484 8.947115 GGCAATAAATAAGACCACCTATGATAC 58.053 37.037 0.00 0.00 0.00 2.24
484 485 9.726438 GCAATAAATAAGACCACCTATGATACT 57.274 33.333 0.00 0.00 0.00 2.12
493 494 9.656323 AAGACCACCTATGATACTACTTTATGA 57.344 33.333 0.00 0.00 0.00 2.15
494 495 9.830186 AGACCACCTATGATACTACTTTATGAT 57.170 33.333 0.00 0.00 0.00 2.45
511 512 9.881649 ACTTTATGATACTATGCACTATGGATG 57.118 33.333 0.00 0.00 29.08 3.51
512 513 9.881649 CTTTATGATACTATGCACTATGGATGT 57.118 33.333 0.00 0.00 29.08 3.06
515 516 8.601047 ATGATACTATGCACTATGGATGTAGT 57.399 34.615 0.00 0.00 35.34 2.73
516 517 9.700831 ATGATACTATGCACTATGGATGTAGTA 57.299 33.333 0.00 0.00 33.29 1.82
517 518 9.700831 TGATACTATGCACTATGGATGTAGTAT 57.299 33.333 9.49 9.49 34.68 2.12
519 520 9.700831 ATACTATGCACTATGGATGTAGTATCA 57.299 33.333 0.00 0.00 29.62 2.15
520 521 8.601047 ACTATGCACTATGGATGTAGTATCAT 57.399 34.615 0.00 0.00 33.29 2.45
521 522 9.700831 ACTATGCACTATGGATGTAGTATCATA 57.299 33.333 0.00 0.00 33.29 2.15
522 523 9.958234 CTATGCACTATGGATGTAGTATCATAC 57.042 37.037 0.00 0.00 33.29 2.39
523 524 7.775053 TGCACTATGGATGTAGTATCATACA 57.225 36.000 0.00 0.00 41.99 2.29
524 525 7.602753 TGCACTATGGATGTAGTATCATACAC 58.397 38.462 0.00 0.00 40.81 2.90
525 526 7.451566 TGCACTATGGATGTAGTATCATACACT 59.548 37.037 0.00 0.00 40.81 3.55
526 527 8.957466 GCACTATGGATGTAGTATCATACACTA 58.043 37.037 0.00 0.00 40.81 2.74
561 562 8.967918 TGCATGATACTAGTATATGTTACTCCC 58.032 37.037 15.42 0.27 0.00 4.30
562 563 8.414778 GCATGATACTAGTATATGTTACTCCCC 58.585 40.741 15.42 0.00 0.00 4.81
563 564 9.475620 CATGATACTAGTATATGTTACTCCCCA 57.524 37.037 15.42 5.35 0.00 4.96
564 565 8.874744 TGATACTAGTATATGTTACTCCCCAC 57.125 38.462 15.42 0.00 0.00 4.61
565 566 8.676020 TGATACTAGTATATGTTACTCCCCACT 58.324 37.037 15.42 0.00 0.00 4.00
568 569 8.880991 ACTAGTATATGTTACTCCCCACTATG 57.119 38.462 0.00 0.00 0.00 2.23
569 570 8.676020 ACTAGTATATGTTACTCCCCACTATGA 58.324 37.037 0.00 0.00 0.00 2.15
570 571 7.778185 AGTATATGTTACTCCCCACTATGAC 57.222 40.000 0.00 0.00 0.00 3.06
571 572 6.724905 AGTATATGTTACTCCCCACTATGACC 59.275 42.308 0.00 0.00 0.00 4.02
572 573 3.193395 TGTTACTCCCCACTATGACCA 57.807 47.619 0.00 0.00 0.00 4.02
573 574 3.104512 TGTTACTCCCCACTATGACCAG 58.895 50.000 0.00 0.00 0.00 4.00
574 575 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
575 576 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
613 615 6.233905 ACTACTCCAAACAAAAGCCAAATT 57.766 33.333 0.00 0.00 0.00 1.82
614 616 6.649155 ACTACTCCAAACAAAAGCCAAATTT 58.351 32.000 0.00 0.00 0.00 1.82
631 633 6.073276 GCCAAATTTACTGGATTTTGAACACC 60.073 38.462 0.00 0.00 35.85 4.16
986 989 0.871057 GAGCAAGAGCACCAGTTCAC 59.129 55.000 0.00 0.00 45.49 3.18
992 995 0.880278 GAGCACCAGTTCACGAGCAA 60.880 55.000 0.00 0.00 0.00 3.91
1011 1014 2.065899 AGCTAGCGATGGAGAAGTCT 57.934 50.000 9.55 0.00 0.00 3.24
1149 1152 2.687566 ACCTTCCCGCCCTTCGAT 60.688 61.111 0.00 0.00 41.67 3.59
1590 1614 3.243643 CGGTCGTTCGTGTTAAGTTCTTT 59.756 43.478 0.00 0.00 0.00 2.52
1607 1632 8.418597 AAGTTCTTTGTATCTGTAGTAGTGGA 57.581 34.615 0.00 0.00 0.00 4.02
1683 1708 6.035217 CGTGGTATGCAATGATGAAATGAAA 58.965 36.000 0.00 0.00 0.00 2.69
1738 1768 7.733402 TGGTTTACTTGTTAATTACGAGCTT 57.267 32.000 0.00 0.00 41.33 3.74
1768 1798 1.021202 TGGTTGGAACAGCAAACTCG 58.979 50.000 0.00 0.00 42.95 4.18
1817 1847 2.949451 AGCTCAGTAGTGTCGATTGG 57.051 50.000 0.00 0.00 0.00 3.16
1818 1848 1.134965 AGCTCAGTAGTGTCGATTGGC 60.135 52.381 0.00 0.00 0.00 4.52
1819 1849 1.134965 GCTCAGTAGTGTCGATTGGCT 60.135 52.381 0.00 0.00 0.00 4.75
1860 1893 9.713713 GATCTAGACAAGTTTTTCTTAAGTCCT 57.286 33.333 1.63 0.00 32.74 3.85
1883 1916 5.933617 TCATCACCATTGGAGATTTCCTAG 58.066 41.667 12.36 2.05 44.36 3.02
2019 2053 5.068855 AGTTAATTAGCTACTCCCTCCGTTC 59.931 44.000 0.00 0.00 0.00 3.95
2020 2054 1.386533 TTAGCTACTCCCTCCGTTCG 58.613 55.000 0.00 0.00 0.00 3.95
2024 2058 0.030908 CTACTCCCTCCGTTCGCATC 59.969 60.000 0.00 0.00 0.00 3.91
2026 2060 0.395311 ACTCCCTCCGTTCGCATCTA 60.395 55.000 0.00 0.00 0.00 1.98
2031 2065 2.943033 CCCTCCGTTCGCATCTAAAAAT 59.057 45.455 0.00 0.00 0.00 1.82
2032 2066 3.377172 CCCTCCGTTCGCATCTAAAAATT 59.623 43.478 0.00 0.00 0.00 1.82
2034 2068 5.499047 CCTCCGTTCGCATCTAAAAATTAC 58.501 41.667 0.00 0.00 0.00 1.89
2035 2069 5.473796 TCCGTTCGCATCTAAAAATTACC 57.526 39.130 0.00 0.00 0.00 2.85
2036 2070 4.333372 TCCGTTCGCATCTAAAAATTACCC 59.667 41.667 0.00 0.00 0.00 3.69
2038 2072 4.496840 CGTTCGCATCTAAAAATTACCCCC 60.497 45.833 0.00 0.00 0.00 5.40
2039 2073 4.513406 TCGCATCTAAAAATTACCCCCT 57.487 40.909 0.00 0.00 0.00 4.79
2040 2074 4.457466 TCGCATCTAAAAATTACCCCCTC 58.543 43.478 0.00 0.00 0.00 4.30
2127 2161 8.487028 AGTATAAATTAAGACCAAGACAGAGGG 58.513 37.037 0.00 0.00 0.00 4.30
2157 2191 0.391661 ACCACTGCTCGGCAATAGTG 60.392 55.000 0.00 0.00 38.41 2.74
2169 2203 5.253330 TCGGCAATAGTGAGAAGGAAAAAT 58.747 37.500 0.00 0.00 0.00 1.82
2295 2340 2.367202 GCTGCAGGCTGTAGGGGTA 61.367 63.158 29.72 0.00 38.06 3.69
2311 2356 1.291939 GGGTAGGGGTGGGAGTAACTA 59.708 57.143 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 7.605691 AGTCAATCTCATCTAACTTTGACCAAG 59.394 37.037 9.31 0.00 42.29 3.61
48 49 7.453393 AGTCAATCTCATCTAACTTTGACCAA 58.547 34.615 9.31 0.00 42.29 3.67
49 50 7.009179 AGTCAATCTCATCTAACTTTGACCA 57.991 36.000 9.31 0.00 42.29 4.02
50 51 7.604164 TGAAGTCAATCTCATCTAACTTTGACC 59.396 37.037 9.31 0.00 42.29 4.02
51 52 8.539770 TGAAGTCAATCTCATCTAACTTTGAC 57.460 34.615 5.67 5.67 41.88 3.18
52 53 8.588472 TCTGAAGTCAATCTCATCTAACTTTGA 58.412 33.333 0.00 0.00 0.00 2.69
53 54 8.655092 GTCTGAAGTCAATCTCATCTAACTTTG 58.345 37.037 0.00 0.00 0.00 2.77
54 55 8.370940 TGTCTGAAGTCAATCTCATCTAACTTT 58.629 33.333 0.00 0.00 0.00 2.66
55 56 7.901029 TGTCTGAAGTCAATCTCATCTAACTT 58.099 34.615 0.00 0.00 0.00 2.66
56 57 7.473735 TGTCTGAAGTCAATCTCATCTAACT 57.526 36.000 0.00 0.00 0.00 2.24
57 58 8.439286 GTTTGTCTGAAGTCAATCTCATCTAAC 58.561 37.037 0.00 0.00 0.00 2.34
58 59 7.604164 GGTTTGTCTGAAGTCAATCTCATCTAA 59.396 37.037 0.00 0.00 0.00 2.10
59 60 7.038729 AGGTTTGTCTGAAGTCAATCTCATCTA 60.039 37.037 0.00 0.00 0.00 1.98
60 61 5.936956 GGTTTGTCTGAAGTCAATCTCATCT 59.063 40.000 0.00 0.00 0.00 2.90
61 62 5.936956 AGGTTTGTCTGAAGTCAATCTCATC 59.063 40.000 0.00 0.00 0.00 2.92
62 63 5.874093 AGGTTTGTCTGAAGTCAATCTCAT 58.126 37.500 0.00 0.00 0.00 2.90
63 64 5.296151 AGGTTTGTCTGAAGTCAATCTCA 57.704 39.130 0.00 0.00 0.00 3.27
64 65 6.459923 AGTAGGTTTGTCTGAAGTCAATCTC 58.540 40.000 0.00 0.00 0.00 2.75
65 66 6.426646 AGTAGGTTTGTCTGAAGTCAATCT 57.573 37.500 0.00 0.00 0.00 2.40
66 67 7.201565 GCATAGTAGGTTTGTCTGAAGTCAATC 60.202 40.741 0.00 0.00 0.00 2.67
67 68 6.595716 GCATAGTAGGTTTGTCTGAAGTCAAT 59.404 38.462 0.00 0.00 0.00 2.57
68 69 5.932303 GCATAGTAGGTTTGTCTGAAGTCAA 59.068 40.000 0.00 0.00 0.00 3.18
69 70 5.011635 TGCATAGTAGGTTTGTCTGAAGTCA 59.988 40.000 0.00 0.00 0.00 3.41
70 71 5.479306 TGCATAGTAGGTTTGTCTGAAGTC 58.521 41.667 0.00 0.00 0.00 3.01
71 72 5.246203 TCTGCATAGTAGGTTTGTCTGAAGT 59.754 40.000 0.00 0.00 0.00 3.01
72 73 5.724328 TCTGCATAGTAGGTTTGTCTGAAG 58.276 41.667 0.00 0.00 0.00 3.02
73 74 5.246203 ACTCTGCATAGTAGGTTTGTCTGAA 59.754 40.000 2.37 0.00 0.00 3.02
74 75 4.772624 ACTCTGCATAGTAGGTTTGTCTGA 59.227 41.667 2.37 0.00 0.00 3.27
75 76 5.078411 ACTCTGCATAGTAGGTTTGTCTG 57.922 43.478 2.37 0.00 0.00 3.51
76 77 6.852420 TTACTCTGCATAGTAGGTTTGTCT 57.148 37.500 11.32 0.00 33.62 3.41
77 78 7.900782 TTTTACTCTGCATAGTAGGTTTGTC 57.099 36.000 11.32 0.00 33.62 3.18
78 79 7.390718 CCTTTTTACTCTGCATAGTAGGTTTGT 59.609 37.037 11.32 0.00 33.62 2.83
79 80 7.606456 TCCTTTTTACTCTGCATAGTAGGTTTG 59.394 37.037 14.93 6.37 33.62 2.93
80 81 7.606839 GTCCTTTTTACTCTGCATAGTAGGTTT 59.393 37.037 14.93 0.00 33.62 3.27
81 82 7.104290 GTCCTTTTTACTCTGCATAGTAGGTT 58.896 38.462 14.93 0.00 33.62 3.50
82 83 6.351966 GGTCCTTTTTACTCTGCATAGTAGGT 60.352 42.308 14.93 0.52 33.62 3.08
83 84 6.049790 GGTCCTTTTTACTCTGCATAGTAGG 58.950 44.000 11.32 11.13 33.62 3.18
84 85 5.749109 CGGTCCTTTTTACTCTGCATAGTAG 59.251 44.000 11.32 3.01 33.62 2.57
85 86 5.394883 CCGGTCCTTTTTACTCTGCATAGTA 60.395 44.000 7.81 7.81 0.00 1.82
86 87 4.504858 CGGTCCTTTTTACTCTGCATAGT 58.495 43.478 9.90 9.90 0.00 2.12
87 88 3.871594 CCGGTCCTTTTTACTCTGCATAG 59.128 47.826 0.00 0.00 0.00 2.23
88 89 3.516300 TCCGGTCCTTTTTACTCTGCATA 59.484 43.478 0.00 0.00 0.00 3.14
89 90 2.304761 TCCGGTCCTTTTTACTCTGCAT 59.695 45.455 0.00 0.00 0.00 3.96
90 91 1.695242 TCCGGTCCTTTTTACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
91 92 2.347731 CTCCGGTCCTTTTTACTCTGC 58.652 52.381 0.00 0.00 0.00 4.26
92 93 2.565834 TCCTCCGGTCCTTTTTACTCTG 59.434 50.000 0.00 0.00 0.00 3.35
93 94 2.898662 TCCTCCGGTCCTTTTTACTCT 58.101 47.619 0.00 0.00 0.00 3.24
94 95 3.007723 ACTTCCTCCGGTCCTTTTTACTC 59.992 47.826 0.00 0.00 0.00 2.59
95 96 2.977580 ACTTCCTCCGGTCCTTTTTACT 59.022 45.455 0.00 0.00 0.00 2.24
96 97 3.413846 ACTTCCTCCGGTCCTTTTTAC 57.586 47.619 0.00 0.00 0.00 2.01
97 98 3.903090 TGTACTTCCTCCGGTCCTTTTTA 59.097 43.478 0.00 0.00 0.00 1.52
98 99 2.707257 TGTACTTCCTCCGGTCCTTTTT 59.293 45.455 0.00 0.00 0.00 1.94
99 100 2.332117 TGTACTTCCTCCGGTCCTTTT 58.668 47.619 0.00 0.00 0.00 2.27
100 101 2.019807 TGTACTTCCTCCGGTCCTTT 57.980 50.000 0.00 0.00 0.00 3.11
101 102 2.108970 GATGTACTTCCTCCGGTCCTT 58.891 52.381 0.00 0.00 0.00 3.36
102 103 1.688627 GGATGTACTTCCTCCGGTCCT 60.689 57.143 18.30 0.00 32.68 3.85
103 104 0.751452 GGATGTACTTCCTCCGGTCC 59.249 60.000 18.30 0.00 32.68 4.46
104 105 0.751452 GGGATGTACTTCCTCCGGTC 59.249 60.000 23.07 5.90 35.97 4.79
105 106 0.338814 AGGGATGTACTTCCTCCGGT 59.661 55.000 23.07 5.03 35.97 5.28
106 107 2.376695 TAGGGATGTACTTCCTCCGG 57.623 55.000 23.07 0.00 35.97 5.14
107 108 3.555168 GCATTAGGGATGTACTTCCTCCG 60.555 52.174 23.07 11.35 38.07 4.63
108 109 3.391296 TGCATTAGGGATGTACTTCCTCC 59.609 47.826 23.07 10.77 38.07 4.30
109 110 4.689612 TGCATTAGGGATGTACTTCCTC 57.310 45.455 23.07 14.96 38.07 3.71
110 111 5.846714 ACTATGCATTAGGGATGTACTTCCT 59.153 40.000 23.07 15.00 38.07 3.36
111 112 6.115448 ACTATGCATTAGGGATGTACTTCC 57.885 41.667 17.53 17.53 38.07 3.46
112 113 8.531982 TGATACTATGCATTAGGGATGTACTTC 58.468 37.037 3.54 0.10 38.07 3.01
113 114 8.435931 TGATACTATGCATTAGGGATGTACTT 57.564 34.615 3.54 0.00 38.07 2.24
114 115 8.615360 ATGATACTATGCATTAGGGATGTACT 57.385 34.615 3.54 0.00 38.07 2.73
117 118 8.996655 ACATATGATACTATGCATTAGGGATGT 58.003 33.333 10.38 2.69 38.07 3.06
118 119 9.842775 AACATATGATACTATGCATTAGGGATG 57.157 33.333 10.38 2.07 38.85 3.51
119 120 9.842775 CAACATATGATACTATGCATTAGGGAT 57.157 33.333 10.38 0.00 33.26 3.85
120 121 8.267183 CCAACATATGATACTATGCATTAGGGA 58.733 37.037 10.38 0.00 33.26 4.20
121 122 8.049117 ACCAACATATGATACTATGCATTAGGG 58.951 37.037 10.38 0.00 33.26 3.53
132 133 9.997172 TCCTCTATGATACCAACATATGATACT 57.003 33.333 10.38 0.00 31.26 2.12
134 135 9.997172 AGTCCTCTATGATACCAACATATGATA 57.003 33.333 10.38 0.00 31.26 2.15
135 136 8.907829 AGTCCTCTATGATACCAACATATGAT 57.092 34.615 10.38 0.00 31.26 2.45
136 137 9.997172 ATAGTCCTCTATGATACCAACATATGA 57.003 33.333 10.38 0.00 35.76 2.15
153 154 9.445878 CATGCATGACAATAAATATAGTCCTCT 57.554 33.333 22.59 0.00 0.00 3.69
154 155 9.440773 TCATGCATGACAATAAATATAGTCCTC 57.559 33.333 25.42 0.00 0.00 3.71
171 172 2.743664 GTGCTACTTGTGTCATGCATGA 59.256 45.455 25.42 25.42 32.77 3.07
172 173 2.485038 TGTGCTACTTGTGTCATGCATG 59.515 45.455 21.07 21.07 32.77 4.06
173 174 2.781923 TGTGCTACTTGTGTCATGCAT 58.218 42.857 0.00 0.00 32.77 3.96
174 175 2.252976 TGTGCTACTTGTGTCATGCA 57.747 45.000 0.00 0.00 0.00 3.96
175 176 2.743664 TGATGTGCTACTTGTGTCATGC 59.256 45.455 0.00 0.00 0.00 4.06
176 177 5.556355 AATGATGTGCTACTTGTGTCATG 57.444 39.130 0.00 0.00 0.00 3.07
177 178 7.686438 TTAAATGATGTGCTACTTGTGTCAT 57.314 32.000 0.00 0.00 0.00 3.06
178 179 7.686438 ATTAAATGATGTGCTACTTGTGTCA 57.314 32.000 0.00 0.00 0.00 3.58
179 180 9.655769 CATATTAAATGATGTGCTACTTGTGTC 57.344 33.333 0.00 0.00 0.00 3.67
180 181 9.394767 TCATATTAAATGATGTGCTACTTGTGT 57.605 29.630 0.00 0.00 0.00 3.72
185 186 9.371136 CCGTATCATATTAAATGATGTGCTACT 57.629 33.333 16.73 0.65 38.98 2.57
186 187 9.151471 ACCGTATCATATTAAATGATGTGCTAC 57.849 33.333 16.73 9.67 38.98 3.58
188 189 9.890629 ATACCGTATCATATTAAATGATGTGCT 57.109 29.630 16.73 5.80 38.98 4.40
223 224 9.651913 AAATGAAGAAAGAGAGACTTGAGTATC 57.348 33.333 0.00 0.00 38.98 2.24
235 236 9.685276 TGGCATAGAATTAAATGAAGAAAGAGA 57.315 29.630 4.14 0.00 0.00 3.10
236 237 9.727627 GTGGCATAGAATTAAATGAAGAAAGAG 57.272 33.333 0.00 0.00 0.00 2.85
237 238 8.686334 GGTGGCATAGAATTAAATGAAGAAAGA 58.314 33.333 0.00 0.00 0.00 2.52
238 239 8.689972 AGGTGGCATAGAATTAAATGAAGAAAG 58.310 33.333 0.00 0.00 0.00 2.62
239 240 8.593945 AGGTGGCATAGAATTAAATGAAGAAA 57.406 30.769 0.00 0.00 0.00 2.52
240 241 7.833682 TGAGGTGGCATAGAATTAAATGAAGAA 59.166 33.333 0.00 0.00 0.00 2.52
241 242 7.345691 TGAGGTGGCATAGAATTAAATGAAGA 58.654 34.615 0.00 0.00 0.00 2.87
242 243 7.572523 TGAGGTGGCATAGAATTAAATGAAG 57.427 36.000 0.00 0.00 0.00 3.02
243 244 7.779326 TGATGAGGTGGCATAGAATTAAATGAA 59.221 33.333 0.00 0.00 0.00 2.57
244 245 7.289310 TGATGAGGTGGCATAGAATTAAATGA 58.711 34.615 0.00 0.00 0.00 2.57
245 246 7.514784 TGATGAGGTGGCATAGAATTAAATG 57.485 36.000 0.00 0.00 0.00 2.32
246 247 8.537728 TTTGATGAGGTGGCATAGAATTAAAT 57.462 30.769 0.00 0.00 0.00 1.40
247 248 7.953005 TTTGATGAGGTGGCATAGAATTAAA 57.047 32.000 0.00 0.00 0.00 1.52
248 249 7.953005 TTTTGATGAGGTGGCATAGAATTAA 57.047 32.000 0.00 0.00 0.00 1.40
249 250 8.415553 CAATTTTGATGAGGTGGCATAGAATTA 58.584 33.333 0.00 0.00 0.00 1.40
250 251 7.270047 CAATTTTGATGAGGTGGCATAGAATT 58.730 34.615 0.00 0.00 0.00 2.17
251 252 6.684613 GCAATTTTGATGAGGTGGCATAGAAT 60.685 38.462 0.00 0.00 0.00 2.40
252 253 5.394443 GCAATTTTGATGAGGTGGCATAGAA 60.394 40.000 0.00 0.00 0.00 2.10
253 254 4.098349 GCAATTTTGATGAGGTGGCATAGA 59.902 41.667 0.00 0.00 0.00 1.98
254 255 4.098960 AGCAATTTTGATGAGGTGGCATAG 59.901 41.667 0.00 0.00 0.00 2.23
255 256 4.025360 AGCAATTTTGATGAGGTGGCATA 58.975 39.130 0.00 0.00 0.00 3.14
256 257 2.835764 AGCAATTTTGATGAGGTGGCAT 59.164 40.909 0.00 0.00 0.00 4.40
257 258 2.250031 AGCAATTTTGATGAGGTGGCA 58.750 42.857 0.00 0.00 0.00 4.92
258 259 3.323751 AAGCAATTTTGATGAGGTGGC 57.676 42.857 0.00 0.00 0.00 5.01
259 260 5.649782 ACTAAGCAATTTTGATGAGGTGG 57.350 39.130 0.00 0.00 29.13 4.61
260 261 5.865552 CCAACTAAGCAATTTTGATGAGGTG 59.134 40.000 4.29 4.29 41.42 4.00
261 262 5.567423 GCCAACTAAGCAATTTTGATGAGGT 60.567 40.000 0.00 0.00 29.13 3.85
262 263 4.866486 GCCAACTAAGCAATTTTGATGAGG 59.134 41.667 0.00 0.00 29.13 3.86
263 264 5.472148 TGCCAACTAAGCAATTTTGATGAG 58.528 37.500 0.00 0.00 37.28 2.90
264 265 5.465532 TGCCAACTAAGCAATTTTGATGA 57.534 34.783 0.00 0.00 37.28 2.92
265 266 5.446741 GCATGCCAACTAAGCAATTTTGATG 60.447 40.000 6.36 0.00 44.83 3.07
266 267 4.632688 GCATGCCAACTAAGCAATTTTGAT 59.367 37.500 6.36 0.00 44.83 2.57
267 268 3.995705 GCATGCCAACTAAGCAATTTTGA 59.004 39.130 6.36 0.00 44.83 2.69
268 269 3.747010 TGCATGCCAACTAAGCAATTTTG 59.253 39.130 16.68 0.00 44.83 2.44
269 270 4.005487 TGCATGCCAACTAAGCAATTTT 57.995 36.364 16.68 0.00 44.83 1.82
270 271 3.681593 TGCATGCCAACTAAGCAATTT 57.318 38.095 16.68 0.00 44.83 1.82
271 272 3.196039 TCATGCATGCCAACTAAGCAATT 59.804 39.130 22.25 0.00 44.83 2.32
272 273 2.761767 TCATGCATGCCAACTAAGCAAT 59.238 40.909 22.25 0.00 44.83 3.56
273 274 2.169330 TCATGCATGCCAACTAAGCAA 58.831 42.857 22.25 0.00 44.83 3.91
274 275 1.836802 TCATGCATGCCAACTAAGCA 58.163 45.000 22.25 0.00 45.94 3.91
275 276 3.567164 AGTATCATGCATGCCAACTAAGC 59.433 43.478 22.25 4.42 0.00 3.09
276 277 5.180117 GGTAGTATCATGCATGCCAACTAAG 59.820 44.000 24.68 3.62 0.00 2.18
277 278 5.063204 GGTAGTATCATGCATGCCAACTAA 58.937 41.667 24.68 9.84 0.00 2.24
278 279 4.347876 AGGTAGTATCATGCATGCCAACTA 59.652 41.667 22.25 21.88 0.00 2.24
279 280 3.137176 AGGTAGTATCATGCATGCCAACT 59.863 43.478 22.25 22.78 0.00 3.16
280 281 3.480470 AGGTAGTATCATGCATGCCAAC 58.520 45.455 22.25 17.59 0.00 3.77
281 282 3.862877 AGGTAGTATCATGCATGCCAA 57.137 42.857 22.25 5.34 0.00 4.52
282 283 4.531732 TCATAGGTAGTATCATGCATGCCA 59.468 41.667 22.25 8.84 0.00 4.92
283 284 5.089970 TCATAGGTAGTATCATGCATGCC 57.910 43.478 22.25 15.40 0.00 4.40
284 285 7.495901 AGTATCATAGGTAGTATCATGCATGC 58.504 38.462 22.25 11.82 0.00 4.06
285 286 8.911965 AGAGTATCATAGGTAGTATCATGCATG 58.088 37.037 21.07 21.07 37.82 4.06
286 287 9.130661 GAGAGTATCATAGGTAGTATCATGCAT 57.869 37.037 0.00 0.00 37.82 3.96
287 288 8.109634 TGAGAGTATCATAGGTAGTATCATGCA 58.890 37.037 0.00 0.00 37.82 3.96
288 289 8.512966 TGAGAGTATCATAGGTAGTATCATGC 57.487 38.462 0.00 0.00 37.82 4.06
300 301 8.283719 AGGCTACCCGTAATGAGAGTATCATAG 61.284 44.444 0.00 0.00 41.30 2.23
301 302 6.523670 AGGCTACCCGTAATGAGAGTATCATA 60.524 42.308 0.00 0.00 41.30 2.15
302 303 5.752332 AGGCTACCCGTAATGAGAGTATCAT 60.752 44.000 0.00 0.00 42.88 2.45
303 304 3.825014 GGCTACCCGTAATGAGAGTATCA 59.175 47.826 0.00 0.00 43.70 2.15
304 305 4.080687 AGGCTACCCGTAATGAGAGTATC 58.919 47.826 0.00 0.00 35.76 2.24
305 306 4.115398 AGGCTACCCGTAATGAGAGTAT 57.885 45.455 0.00 0.00 35.76 2.12
306 307 3.589951 AGGCTACCCGTAATGAGAGTA 57.410 47.619 0.00 0.00 35.76 2.59
307 308 2.456073 AGGCTACCCGTAATGAGAGT 57.544 50.000 0.00 0.00 35.76 3.24
308 309 3.890147 AGTTAGGCTACCCGTAATGAGAG 59.110 47.826 0.00 0.00 35.76 3.20
309 310 3.907221 AGTTAGGCTACCCGTAATGAGA 58.093 45.455 0.00 0.00 35.76 3.27
310 311 4.826183 ACTAGTTAGGCTACCCGTAATGAG 59.174 45.833 0.00 0.00 35.76 2.90
311 312 4.796606 ACTAGTTAGGCTACCCGTAATGA 58.203 43.478 0.00 0.00 35.76 2.57
312 313 6.432162 TGATACTAGTTAGGCTACCCGTAATG 59.568 42.308 0.00 0.00 35.76 1.90
313 314 6.546484 TGATACTAGTTAGGCTACCCGTAAT 58.454 40.000 0.00 0.00 35.76 1.89
314 315 5.940617 TGATACTAGTTAGGCTACCCGTAA 58.059 41.667 0.00 0.00 35.76 3.18
315 316 5.567037 TGATACTAGTTAGGCTACCCGTA 57.433 43.478 0.00 0.00 35.76 4.02
316 317 4.443978 TGATACTAGTTAGGCTACCCGT 57.556 45.455 0.00 0.00 35.76 5.28
317 318 7.992033 AGTATATGATACTAGTTAGGCTACCCG 59.008 40.741 0.00 0.00 35.76 5.28
318 319 9.697990 AAGTATATGATACTAGTTAGGCTACCC 57.302 37.037 0.00 0.00 0.00 3.69
321 322 9.696572 CCCAAGTATATGATACTAGTTAGGCTA 57.303 37.037 0.00 0.00 0.00 3.93
322 323 8.399529 TCCCAAGTATATGATACTAGTTAGGCT 58.600 37.037 0.00 0.00 0.00 4.58
323 324 8.468399 GTCCCAAGTATATGATACTAGTTAGGC 58.532 40.741 0.00 0.00 0.00 3.93
324 325 9.756571 AGTCCCAAGTATATGATACTAGTTAGG 57.243 37.037 0.00 0.00 0.00 2.69
326 327 9.445878 CGAGTCCCAAGTATATGATACTAGTTA 57.554 37.037 0.00 0.00 0.00 2.24
327 328 7.094291 GCGAGTCCCAAGTATATGATACTAGTT 60.094 40.741 0.00 0.00 0.00 2.24
328 329 6.374894 GCGAGTCCCAAGTATATGATACTAGT 59.625 42.308 0.00 0.00 0.00 2.57
329 330 6.374613 TGCGAGTCCCAAGTATATGATACTAG 59.625 42.308 0.00 0.00 0.00 2.57
330 331 6.243148 TGCGAGTCCCAAGTATATGATACTA 58.757 40.000 0.00 0.00 0.00 1.82
331 332 5.077564 TGCGAGTCCCAAGTATATGATACT 58.922 41.667 0.00 0.00 0.00 2.12
332 333 5.386958 TGCGAGTCCCAAGTATATGATAC 57.613 43.478 0.00 0.00 0.00 2.24
333 334 6.183360 TGTTTGCGAGTCCCAAGTATATGATA 60.183 38.462 0.00 0.00 0.00 2.15
334 335 4.955811 TTGCGAGTCCCAAGTATATGAT 57.044 40.909 0.00 0.00 0.00 2.45
335 336 4.081365 TGTTTGCGAGTCCCAAGTATATGA 60.081 41.667 0.00 0.00 0.00 2.15
336 337 4.188462 TGTTTGCGAGTCCCAAGTATATG 58.812 43.478 0.00 0.00 0.00 1.78
337 338 4.481368 TGTTTGCGAGTCCCAAGTATAT 57.519 40.909 0.00 0.00 0.00 0.86
338 339 3.965379 TGTTTGCGAGTCCCAAGTATA 57.035 42.857 0.00 0.00 0.00 1.47
339 340 2.851263 TGTTTGCGAGTCCCAAGTAT 57.149 45.000 0.00 0.00 0.00 2.12
340 341 2.422597 CATGTTTGCGAGTCCCAAGTA 58.577 47.619 0.00 0.00 0.00 2.24
341 342 1.238439 CATGTTTGCGAGTCCCAAGT 58.762 50.000 0.00 0.00 0.00 3.16
342 343 0.109597 GCATGTTTGCGAGTCCCAAG 60.110 55.000 0.00 0.00 39.49 3.61
343 344 1.956043 GCATGTTTGCGAGTCCCAA 59.044 52.632 0.00 0.00 39.49 4.12
344 345 3.667087 GCATGTTTGCGAGTCCCA 58.333 55.556 0.00 0.00 39.49 4.37
358 359 6.380846 TCTTTAATTTCCTGCCATGTAAGCAT 59.619 34.615 0.00 0.00 40.04 3.79
359 360 5.714333 TCTTTAATTTCCTGCCATGTAAGCA 59.286 36.000 0.00 0.00 38.82 3.91
360 361 6.207691 TCTTTAATTTCCTGCCATGTAAGC 57.792 37.500 0.00 0.00 0.00 3.09
361 362 8.055279 TCTTCTTTAATTTCCTGCCATGTAAG 57.945 34.615 0.00 0.00 0.00 2.34
362 363 7.888021 TCTCTTCTTTAATTTCCTGCCATGTAA 59.112 33.333 0.00 0.00 0.00 2.41
363 364 7.402054 TCTCTTCTTTAATTTCCTGCCATGTA 58.598 34.615 0.00 0.00 0.00 2.29
364 365 6.248433 TCTCTTCTTTAATTTCCTGCCATGT 58.752 36.000 0.00 0.00 0.00 3.21
365 366 6.600822 TCTCTCTTCTTTAATTTCCTGCCATG 59.399 38.462 0.00 0.00 0.00 3.66
366 367 6.725364 TCTCTCTTCTTTAATTTCCTGCCAT 58.275 36.000 0.00 0.00 0.00 4.40
367 368 6.013379 TCTCTCTCTTCTTTAATTTCCTGCCA 60.013 38.462 0.00 0.00 0.00 4.92
368 369 6.410540 TCTCTCTCTTCTTTAATTTCCTGCC 58.589 40.000 0.00 0.00 0.00 4.85
369 370 7.327214 TCTCTCTCTCTTCTTTAATTTCCTGC 58.673 38.462 0.00 0.00 0.00 4.85
370 371 8.531146 ACTCTCTCTCTCTTCTTTAATTTCCTG 58.469 37.037 0.00 0.00 0.00 3.86
371 372 8.664669 ACTCTCTCTCTCTTCTTTAATTTCCT 57.335 34.615 0.00 0.00 0.00 3.36
372 373 8.527810 TGACTCTCTCTCTCTTCTTTAATTTCC 58.472 37.037 0.00 0.00 0.00 3.13
376 377 9.920946 ACTATGACTCTCTCTCTCTTCTTTAAT 57.079 33.333 0.00 0.00 0.00 1.40
379 380 9.174166 GTTACTATGACTCTCTCTCTCTTCTTT 57.826 37.037 0.00 0.00 0.00 2.52
380 381 8.325787 TGTTACTATGACTCTCTCTCTCTTCTT 58.674 37.037 0.00 0.00 0.00 2.52
381 382 7.857456 TGTTACTATGACTCTCTCTCTCTTCT 58.143 38.462 0.00 0.00 0.00 2.85
382 383 8.677148 ATGTTACTATGACTCTCTCTCTCTTC 57.323 38.462 0.00 0.00 0.00 2.87
383 384 9.778741 CTATGTTACTATGACTCTCTCTCTCTT 57.221 37.037 0.00 0.00 0.00 2.85
384 385 8.375506 CCTATGTTACTATGACTCTCTCTCTCT 58.624 40.741 0.00 0.00 0.00 3.10
385 386 8.154856 ACCTATGTTACTATGACTCTCTCTCTC 58.845 40.741 0.00 0.00 0.00 3.20
386 387 8.041143 ACCTATGTTACTATGACTCTCTCTCT 57.959 38.462 0.00 0.00 0.00 3.10
387 388 9.431887 CTACCTATGTTACTATGACTCTCTCTC 57.568 40.741 0.00 0.00 0.00 3.20
388 389 9.161572 TCTACCTATGTTACTATGACTCTCTCT 57.838 37.037 0.00 0.00 0.00 3.10
389 390 9.953565 ATCTACCTATGTTACTATGACTCTCTC 57.046 37.037 0.00 0.00 0.00 3.20
392 393 9.962809 GGTATCTACCTATGTTACTATGACTCT 57.037 37.037 0.00 0.00 43.10 3.24
393 394 8.881743 CGGTATCTACCTATGTTACTATGACTC 58.118 40.741 4.93 0.00 44.25 3.36
394 395 8.381636 ACGGTATCTACCTATGTTACTATGACT 58.618 37.037 4.93 0.00 44.25 3.41
395 396 8.558973 ACGGTATCTACCTATGTTACTATGAC 57.441 38.462 4.93 0.00 44.25 3.06
400 401 8.930846 ATGTTACGGTATCTACCTATGTTACT 57.069 34.615 4.93 0.00 44.25 2.24
428 429 9.051679 GCATGACACATAGTACCATAACATTTA 57.948 33.333 0.00 0.00 0.00 1.40
429 430 7.555914 TGCATGACACATAGTACCATAACATTT 59.444 33.333 0.00 0.00 0.00 2.32
430 431 7.053498 TGCATGACACATAGTACCATAACATT 58.947 34.615 0.00 0.00 0.00 2.71
431 432 6.591001 TGCATGACACATAGTACCATAACAT 58.409 36.000 0.00 0.00 0.00 2.71
432 433 5.983540 TGCATGACACATAGTACCATAACA 58.016 37.500 0.00 0.00 0.00 2.41
433 434 6.073058 CCATGCATGACACATAGTACCATAAC 60.073 42.308 28.31 0.00 0.00 1.89
434 435 5.997129 CCATGCATGACACATAGTACCATAA 59.003 40.000 28.31 0.00 0.00 1.90
435 436 5.550290 CCATGCATGACACATAGTACCATA 58.450 41.667 28.31 0.00 0.00 2.74
436 437 4.392047 CCATGCATGACACATAGTACCAT 58.608 43.478 28.31 0.00 0.00 3.55
437 438 3.807553 CCATGCATGACACATAGTACCA 58.192 45.455 28.31 0.00 0.00 3.25
438 439 2.549754 GCCATGCATGACACATAGTACC 59.450 50.000 28.31 0.00 0.00 3.34
439 440 3.205338 TGCCATGCATGACACATAGTAC 58.795 45.455 28.31 4.63 31.71 2.73
440 441 3.557228 TGCCATGCATGACACATAGTA 57.443 42.857 28.31 5.91 31.71 1.82
441 442 2.423446 TGCCATGCATGACACATAGT 57.577 45.000 28.31 0.00 31.71 2.12
442 443 5.441709 TTATTGCCATGCATGACACATAG 57.558 39.130 28.31 10.23 38.76 2.23
443 444 5.848833 TTTATTGCCATGCATGACACATA 57.151 34.783 28.31 17.78 38.76 2.29
444 445 4.739587 TTTATTGCCATGCATGACACAT 57.260 36.364 28.31 18.68 38.76 3.21
445 446 4.739587 ATTTATTGCCATGCATGACACA 57.260 36.364 28.31 18.81 38.76 3.72
446 447 6.418819 GTCTTATTTATTGCCATGCATGACAC 59.581 38.462 28.31 16.49 38.76 3.67
447 448 6.461370 GGTCTTATTTATTGCCATGCATGACA 60.461 38.462 28.31 20.53 38.76 3.58
448 449 5.922544 GGTCTTATTTATTGCCATGCATGAC 59.077 40.000 28.31 17.77 38.76 3.06
449 450 5.597594 TGGTCTTATTTATTGCCATGCATGA 59.402 36.000 28.31 8.76 38.76 3.07
450 451 5.693104 GTGGTCTTATTTATTGCCATGCATG 59.307 40.000 20.19 20.19 38.76 4.06
451 452 5.221501 GGTGGTCTTATTTATTGCCATGCAT 60.222 40.000 0.00 0.00 38.76 3.96
452 453 4.099266 GGTGGTCTTATTTATTGCCATGCA 59.901 41.667 0.00 0.00 36.47 3.96
453 454 4.342092 AGGTGGTCTTATTTATTGCCATGC 59.658 41.667 0.00 0.00 0.00 4.06
454 455 7.448161 TCATAGGTGGTCTTATTTATTGCCATG 59.552 37.037 0.00 0.00 0.00 3.66
455 456 7.526041 TCATAGGTGGTCTTATTTATTGCCAT 58.474 34.615 0.00 0.00 0.00 4.40
456 457 6.905736 TCATAGGTGGTCTTATTTATTGCCA 58.094 36.000 0.00 0.00 0.00 4.92
457 458 8.947115 GTATCATAGGTGGTCTTATTTATTGCC 58.053 37.037 0.00 0.00 0.00 4.52
458 459 9.726438 AGTATCATAGGTGGTCTTATTTATTGC 57.274 33.333 0.00 0.00 0.00 3.56
467 468 9.656323 TCATAAAGTAGTATCATAGGTGGTCTT 57.344 33.333 0.00 0.00 0.00 3.01
468 469 9.830186 ATCATAAAGTAGTATCATAGGTGGTCT 57.170 33.333 0.00 0.00 0.00 3.85
485 486 9.881649 CATCCATAGTGCATAGTATCATAAAGT 57.118 33.333 0.00 0.00 0.00 2.66
486 487 9.881649 ACATCCATAGTGCATAGTATCATAAAG 57.118 33.333 0.00 0.00 0.00 1.85
489 490 9.700831 ACTACATCCATAGTGCATAGTATCATA 57.299 33.333 0.00 0.00 34.02 2.15
490 491 8.601047 ACTACATCCATAGTGCATAGTATCAT 57.399 34.615 0.00 0.00 34.02 2.45
491 492 9.700831 ATACTACATCCATAGTGCATAGTATCA 57.299 33.333 0.00 0.00 36.09 2.15
493 494 9.700831 TGATACTACATCCATAGTGCATAGTAT 57.299 33.333 9.49 9.49 37.18 2.12
494 495 9.700831 ATGATACTACATCCATAGTGCATAGTA 57.299 33.333 0.00 0.00 36.09 1.82
495 496 8.601047 ATGATACTACATCCATAGTGCATAGT 57.399 34.615 0.00 0.00 36.09 2.12
496 497 9.958234 GTATGATACTACATCCATAGTGCATAG 57.042 37.037 0.00 0.00 36.05 2.23
497 498 9.474313 TGTATGATACTACATCCATAGTGCATA 57.526 33.333 4.03 0.00 36.09 3.14
498 499 8.253810 GTGTATGATACTACATCCATAGTGCAT 58.746 37.037 4.03 0.00 36.09 3.96
499 500 7.451566 AGTGTATGATACTACATCCATAGTGCA 59.548 37.037 4.03 0.00 36.09 4.57
500 501 7.831753 AGTGTATGATACTACATCCATAGTGC 58.168 38.462 4.03 0.00 36.09 4.40
535 536 8.967918 GGGAGTAACATATACTAGTATCATGCA 58.032 37.037 18.68 1.71 0.00 3.96
536 537 8.414778 GGGGAGTAACATATACTAGTATCATGC 58.585 40.741 18.68 7.64 0.00 4.06
537 538 9.475620 TGGGGAGTAACATATACTAGTATCATG 57.524 37.037 18.68 19.42 0.00 3.07
538 539 9.476928 GTGGGGAGTAACATATACTAGTATCAT 57.523 37.037 18.68 8.45 0.00 2.45
539 540 8.676020 AGTGGGGAGTAACATATACTAGTATCA 58.324 37.037 18.68 6.59 0.00 2.15
542 543 9.970553 CATAGTGGGGAGTAACATATACTAGTA 57.029 37.037 4.77 4.77 0.00 1.82
543 544 8.676020 TCATAGTGGGGAGTAACATATACTAGT 58.324 37.037 0.00 0.00 0.00 2.57
544 545 8.958506 GTCATAGTGGGGAGTAACATATACTAG 58.041 40.741 0.00 0.00 0.00 2.57
545 546 7.892241 GGTCATAGTGGGGAGTAACATATACTA 59.108 40.741 0.00 0.00 0.00 1.82
546 547 6.724905 GGTCATAGTGGGGAGTAACATATACT 59.275 42.308 0.00 0.00 0.00 2.12
547 548 6.495872 TGGTCATAGTGGGGAGTAACATATAC 59.504 42.308 0.00 0.00 0.00 1.47
548 549 6.626238 TGGTCATAGTGGGGAGTAACATATA 58.374 40.000 0.00 0.00 0.00 0.86
549 550 5.473273 TGGTCATAGTGGGGAGTAACATAT 58.527 41.667 0.00 0.00 0.00 1.78
550 551 4.886163 TGGTCATAGTGGGGAGTAACATA 58.114 43.478 0.00 0.00 0.00 2.29
551 552 3.711704 CTGGTCATAGTGGGGAGTAACAT 59.288 47.826 0.00 0.00 0.00 2.71
552 553 3.104512 CTGGTCATAGTGGGGAGTAACA 58.895 50.000 0.00 0.00 0.00 2.41
553 554 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
554 555 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
555 556 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
556 557 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
557 558 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
558 559 0.639943 TAGGCTGGTCATAGTGGGGA 59.360 55.000 0.00 0.00 0.00 4.81
559 560 1.417890 CTTAGGCTGGTCATAGTGGGG 59.582 57.143 0.00 0.00 0.00 4.96
560 561 2.398588 TCTTAGGCTGGTCATAGTGGG 58.601 52.381 0.00 0.00 0.00 4.61
561 562 3.452627 ACTTCTTAGGCTGGTCATAGTGG 59.547 47.826 0.00 0.00 0.00 4.00
562 563 4.744795 ACTTCTTAGGCTGGTCATAGTG 57.255 45.455 0.00 0.00 0.00 2.74
563 564 5.361285 CACTACTTCTTAGGCTGGTCATAGT 59.639 44.000 0.00 0.00 31.13 2.12
564 565 5.737635 GCACTACTTCTTAGGCTGGTCATAG 60.738 48.000 0.00 0.00 31.13 2.23
565 566 4.099573 GCACTACTTCTTAGGCTGGTCATA 59.900 45.833 0.00 0.00 31.13 2.15
566 567 3.118592 GCACTACTTCTTAGGCTGGTCAT 60.119 47.826 0.00 0.00 31.13 3.06
567 568 2.233922 GCACTACTTCTTAGGCTGGTCA 59.766 50.000 0.00 0.00 31.13 4.02
568 569 2.498078 AGCACTACTTCTTAGGCTGGTC 59.502 50.000 0.00 0.00 34.70 4.02
569 570 2.541466 AGCACTACTTCTTAGGCTGGT 58.459 47.619 0.00 0.00 34.70 4.00
570 571 3.702045 AGTAGCACTACTTCTTAGGCTGG 59.298 47.826 4.47 0.00 43.35 4.85
571 572 4.993029 AGTAGCACTACTTCTTAGGCTG 57.007 45.455 4.47 0.00 43.35 4.85
595 596 5.819901 CCAGTAAATTTGGCTTTTGTTTGGA 59.180 36.000 0.00 0.00 0.00 3.53
603 605 7.772757 TGTTCAAAATCCAGTAAATTTGGCTTT 59.227 29.630 0.00 0.00 36.02 3.51
613 615 5.450453 TCAAGGGTGTTCAAAATCCAGTAA 58.550 37.500 0.00 0.00 0.00 2.24
614 616 5.055265 TCAAGGGTGTTCAAAATCCAGTA 57.945 39.130 0.00 0.00 0.00 2.74
631 633 1.717937 GCTGTAGCGTGCATCAAGG 59.282 57.895 0.00 0.00 0.00 3.61
822 824 2.356793 GCTCATCGATCGGCCTGG 60.357 66.667 16.41 3.67 0.00 4.45
986 989 0.938637 CTCCATCGCTAGCTTGCTCG 60.939 60.000 17.91 3.74 0.00 5.03
992 995 2.065899 AGACTTCTCCATCGCTAGCT 57.934 50.000 13.93 0.00 0.00 3.32
1198 1201 3.599704 GCTGAATCCCGGCATGCC 61.600 66.667 27.67 27.67 46.40 4.40
1381 1402 2.297315 CCAGCGGATCTAGCTATCAACA 59.703 50.000 14.12 0.00 44.06 3.33
1590 1614 5.201243 ACATGCTCCACTACTACAGATACA 58.799 41.667 0.00 0.00 0.00 2.29
1607 1632 4.160642 TCATATGCCTCAAGAACATGCT 57.839 40.909 0.00 0.00 0.00 3.79
1768 1798 1.336755 ACTCCGACCAAAACACAATGC 59.663 47.619 0.00 0.00 0.00 3.56
1817 1847 4.935885 AGATCGTCAAGTTTCATTCAGC 57.064 40.909 0.00 0.00 0.00 4.26
1818 1848 6.808704 TGTCTAGATCGTCAAGTTTCATTCAG 59.191 38.462 0.00 0.00 0.00 3.02
1819 1849 6.687604 TGTCTAGATCGTCAAGTTTCATTCA 58.312 36.000 0.00 0.00 0.00 2.57
1860 1893 4.868172 AGGAAATCTCCAATGGTGATGA 57.132 40.909 16.50 3.97 45.24 2.92
1883 1916 4.815308 AGATATCTGTTGATGCACTTCAGC 59.185 41.667 3.89 0.00 34.32 4.26
1931 1964 7.062957 AGACATCTCTTTCTTTTTCCCTTCAA 58.937 34.615 0.00 0.00 0.00 2.69
1962 1996 1.070786 GGGCTTCCAACTCGTGTCA 59.929 57.895 0.00 0.00 0.00 3.58
2019 2053 4.275936 CAGAGGGGGTAATTTTTAGATGCG 59.724 45.833 0.00 0.00 0.00 4.73
2020 2054 5.201243 ACAGAGGGGGTAATTTTTAGATGC 58.799 41.667 0.00 0.00 0.00 3.91
2024 2058 6.062258 TGAGACAGAGGGGGTAATTTTTAG 57.938 41.667 0.00 0.00 0.00 1.85
2026 2060 5.536497 ATGAGACAGAGGGGGTAATTTTT 57.464 39.130 0.00 0.00 0.00 1.94
2031 2065 7.125811 GCATATATTATGAGACAGAGGGGGTAA 59.874 40.741 0.00 0.00 0.00 2.85
2032 2066 6.611642 GCATATATTATGAGACAGAGGGGGTA 59.388 42.308 0.00 0.00 0.00 3.69
2034 2068 5.426509 TGCATATATTATGAGACAGAGGGGG 59.573 44.000 0.00 0.00 0.00 5.40
2035 2069 6.550938 TGCATATATTATGAGACAGAGGGG 57.449 41.667 0.00 0.00 0.00 4.79
2036 2070 8.853077 TTTTGCATATATTATGAGACAGAGGG 57.147 34.615 0.00 0.00 0.00 4.30
2127 2161 3.364964 CCGAGCAGTGGTGTTTTATTCAC 60.365 47.826 0.00 0.00 35.36 3.18
2261 2296 2.931969 TGCAGCTGATTTACATCGACAG 59.068 45.455 20.43 0.00 31.08 3.51
2295 2340 3.655384 GAGAATAGTTACTCCCACCCCT 58.345 50.000 0.00 0.00 0.00 4.79
2311 2356 7.931407 TGAGGTAATGTACATAAATGCGAGAAT 59.069 33.333 9.21 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.