Multiple sequence alignment - TraesCS3A01G164200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G164200 chr3A 100.000 4496 0 0 1 4496 168841032 168836537 0.000000e+00 8303.0
1 TraesCS3A01G164200 chr3B 94.028 3399 163 25 699 4076 236123593 236126972 0.000000e+00 5116.0
2 TraesCS3A01G164200 chr3B 88.618 738 40 20 1 699 236122823 236123555 0.000000e+00 857.0
3 TraesCS3A01G164200 chr3B 84.416 77 10 1 4284 4358 450143477 450143553 1.730000e-09 75.0
4 TraesCS3A01G164200 chr3D 94.971 2426 90 19 1754 4157 159426753 159429168 0.000000e+00 3775.0
5 TraesCS3A01G164200 chr3D 93.789 950 40 9 790 1725 159425443 159426387 0.000000e+00 1410.0
6 TraesCS3A01G164200 chr3D 87.305 512 43 9 8 499 159424377 159424886 2.350000e-157 566.0
7 TraesCS3A01G164200 chr3D 87.879 99 12 0 4398 4496 159431274 159431372 2.840000e-22 117.0
8 TraesCS3A01G164200 chr3D 93.151 73 5 0 4169 4241 159429206 159429278 1.710000e-19 108.0
9 TraesCS3A01G164200 chrUn 85.329 334 47 2 1690 2021 308865859 308866192 1.200000e-90 344.0
10 TraesCS3A01G164200 chrUn 84.416 77 8 4 4283 4359 76770060 76770132 6.240000e-09 73.1
11 TraesCS3A01G164200 chr7A 85.329 334 47 2 1690 2021 675878239 675878572 1.200000e-90 344.0
12 TraesCS3A01G164200 chr7A 85.329 334 47 2 1690 2021 675916114 675916447 1.200000e-90 344.0
13 TraesCS3A01G164200 chr6B 84.459 296 43 3 1690 1982 21944575 21944280 5.690000e-74 289.0
14 TraesCS3A01G164200 chr5D 82.624 282 47 2 1833 2113 536539649 536539369 9.660000e-62 248.0
15 TraesCS3A01G164200 chr7D 81.752 274 23 15 1982 2241 412164744 412165004 2.120000e-48 204.0
16 TraesCS3A01G164200 chr2D 78.443 334 41 16 1690 2021 91346024 91346328 5.940000e-44 189.0
17 TraesCS3A01G164200 chr2D 86.250 80 5 4 4285 4358 313225471 313225550 1.040000e-11 82.4
18 TraesCS3A01G164200 chr2D 85.333 75 7 3 4285 4358 124810958 124811029 1.730000e-09 75.0
19 TraesCS3A01G164200 chr5B 87.342 79 4 2 4283 4358 334662393 334662318 8.010000e-13 86.1
20 TraesCS3A01G164200 chr5A 85.897 78 8 1 4284 4358 552280818 552280741 3.730000e-11 80.5
21 TraesCS3A01G164200 chr5A 85.897 78 8 1 4285 4359 552280741 552280818 3.730000e-11 80.5
22 TraesCS3A01G164200 chr1B 84.146 82 7 4 4284 4359 452793980 452793899 1.730000e-09 75.0
23 TraesCS3A01G164200 chr4B 84.416 77 9 2 4284 4358 48680252 48680177 6.240000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G164200 chr3A 168836537 168841032 4495 True 8303.0 8303 100.000 1 4496 1 chr3A.!!$R1 4495
1 TraesCS3A01G164200 chr3B 236122823 236126972 4149 False 2986.5 5116 91.323 1 4076 2 chr3B.!!$F2 4075
2 TraesCS3A01G164200 chr3D 159424377 159431372 6995 False 1195.2 3775 91.419 8 4496 5 chr3D.!!$F1 4488

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
355 378 0.165944 GTGCTGATTGTTCGTTCCGG 59.834 55.000 0.0 0.0 0.00 5.14 F
1023 1382 0.108138 CTTCAGTAGGGGTTGCTCCG 60.108 60.000 0.0 0.0 37.00 4.63 F
1293 1652 0.320683 GTGGCAAAAATGGTCAGCCC 60.321 55.000 0.0 0.0 44.60 5.19 F
2401 3114 0.249911 AACTGTGTGACTTCGGGAGC 60.250 55.000 0.0 0.0 0.00 4.70 F
3245 3960 2.126951 GGTACCCGCCTTCCGAATA 58.873 57.895 0.0 0.0 40.02 1.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1535 1904 0.323087 TAGCTCACGGTCTGCAGGTA 60.323 55.000 15.13 0.0 0.00 3.08 R
2395 3108 0.385974 CAAGAACTTTTGCGCTCCCG 60.386 55.000 9.73 0.0 37.57 5.14 R
3184 3899 1.150536 GGGGTGAACAAGTGCCTCA 59.849 57.895 0.00 0.0 0.00 3.86 R
3465 4181 0.248565 AGCTCTGCTTTCTCGCATGA 59.751 50.000 0.00 0.0 39.52 3.07 R
4342 5104 1.854939 TCTTATACTCCCTCCGTCCCA 59.145 52.381 0.00 0.0 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 96 1.338200 CGACAACCAGAAAGGAGAGGG 60.338 57.143 0.00 0.00 41.22 4.30
177 183 4.564909 CCGAGAATCCAGCGATCTCTCG 62.565 59.091 16.94 16.94 44.66 4.04
180 196 1.395045 AATCCAGCGATCTCTCGGCA 61.395 55.000 0.00 0.00 45.15 5.69
300 316 1.077501 CCATCCATCCGTGGCTGTT 60.078 57.895 0.00 0.00 45.63 3.16
337 360 1.594310 GCCTCTTCCTGCTTCTCGT 59.406 57.895 0.00 0.00 0.00 4.18
340 363 0.246086 CTCTTCCTGCTTCTCGTGCT 59.754 55.000 0.00 0.00 0.00 4.40
353 376 1.126846 CTCGTGCTGATTGTTCGTTCC 59.873 52.381 0.00 0.00 0.00 3.62
354 377 0.179250 CGTGCTGATTGTTCGTTCCG 60.179 55.000 0.00 0.00 0.00 4.30
355 378 0.165944 GTGCTGATTGTTCGTTCCGG 59.834 55.000 0.00 0.00 0.00 5.14
359 392 1.459592 CTGATTGTTCGTTCCGGTGAC 59.540 52.381 0.00 0.39 0.00 3.67
367 400 1.079336 GTTCCGGTGACCTGGCTAC 60.079 63.158 0.00 1.62 0.00 3.58
383 416 0.671251 CTACGACTCTGCCAGGATCC 59.329 60.000 2.48 2.48 0.00 3.36
428 461 0.590732 GCCATTTTGCGATCTCTGCG 60.591 55.000 0.00 0.00 34.24 5.18
481 514 0.518559 GATTTTCTCCGACGCGTTGC 60.519 55.000 21.38 4.20 0.00 4.17
561 594 0.456221 CAGGGAGCACTCGTACGAAT 59.544 55.000 20.00 6.37 0.00 3.34
684 966 0.895100 TGCCCTCCAAACAGATGCAC 60.895 55.000 0.00 0.00 0.00 4.57
733 1078 0.603569 TCAGGTCCACTTTCTCGAGC 59.396 55.000 7.81 0.00 0.00 5.03
753 1098 2.175236 GAAAGCTGCTTTCCCCGAG 58.825 57.895 34.12 0.00 42.61 4.63
765 1110 2.511600 CCCGAGAACATGGTCGCC 60.512 66.667 9.04 2.62 34.78 5.54
803 1149 7.690952 ATAGTTAGGCCAAATAAACGTTTCA 57.309 32.000 18.42 4.77 0.00 2.69
879 1238 3.056952 GCATCTGGCGTGTTTATTCTG 57.943 47.619 0.00 0.00 0.00 3.02
897 1256 5.356882 TTCTGAATTTTGTTGCTACCTCG 57.643 39.130 0.00 0.00 0.00 4.63
918 1277 5.109210 TCGTATGACTGATGTTGGTCATTC 58.891 41.667 12.66 7.89 46.86 2.67
957 1316 3.838244 AACACCTACTGCTTCTGTGAA 57.162 42.857 0.00 0.00 0.00 3.18
1014 1373 3.738281 CGTAACAGATGGCTTCAGTAGGG 60.738 52.174 3.03 0.00 0.00 3.53
1023 1382 0.108138 CTTCAGTAGGGGTTGCTCCG 60.108 60.000 0.00 0.00 37.00 4.63
1044 1403 0.535780 CTGGGCACAAGAACAGCAGA 60.536 55.000 0.00 0.00 0.00 4.26
1145 1504 0.907486 TCTGGATGGGTCTTCTGCAG 59.093 55.000 7.63 7.63 0.00 4.41
1218 1577 1.952296 CATATGCAGGAAGTGGAAGCC 59.048 52.381 0.00 0.00 0.00 4.35
1293 1652 0.320683 GTGGCAAAAATGGTCAGCCC 60.321 55.000 0.00 0.00 44.60 5.19
1385 1744 1.401148 GCCTGCATGCATGATTCGATC 60.401 52.381 30.64 10.88 0.00 3.69
1433 1792 4.096382 CGTGCTAAATGTCCTAAATGCCTT 59.904 41.667 0.00 0.00 0.00 4.35
1434 1793 5.582550 GTGCTAAATGTCCTAAATGCCTTC 58.417 41.667 0.00 0.00 0.00 3.46
1435 1794 5.125417 GTGCTAAATGTCCTAAATGCCTTCA 59.875 40.000 0.00 0.00 0.00 3.02
1436 1795 5.893255 TGCTAAATGTCCTAAATGCCTTCAT 59.107 36.000 0.00 0.00 33.53 2.57
1437 1796 6.380846 TGCTAAATGTCCTAAATGCCTTCATT 59.619 34.615 0.00 0.00 44.32 2.57
1438 1797 7.559533 TGCTAAATGTCCTAAATGCCTTCATTA 59.440 33.333 0.00 0.00 41.77 1.90
1439 1798 8.579863 GCTAAATGTCCTAAATGCCTTCATTAT 58.420 33.333 0.00 0.00 41.77 1.28
1461 1829 6.857777 ATTGTCAATCTCTGCTAATGCTAC 57.142 37.500 0.00 0.00 40.48 3.58
1619 1988 2.303175 TCCAGGTTAGTTGCAACAACC 58.697 47.619 33.56 33.56 38.86 3.77
1627 1996 0.746659 GTTGCAACAACCTCAGGCTT 59.253 50.000 24.52 0.00 0.00 4.35
2012 2719 8.779354 ATGAACTGTATCTAAACTTGGTTCTC 57.221 34.615 0.00 0.00 34.70 2.87
2143 2855 8.626526 TCTGTATGTTCTTTTCTTTTTGGTACC 58.373 33.333 4.43 4.43 0.00 3.34
2146 2858 3.612472 TCTTTTCTTTTTGGTACCGCG 57.388 42.857 7.57 0.00 0.00 6.46
2155 2867 4.925061 TTTTGGTACCGCGTTATACTTG 57.075 40.909 7.57 0.00 0.00 3.16
2181 2893 6.151144 GGCGTCTGCTAATCCCATATTTATTT 59.849 38.462 0.00 0.00 42.25 1.40
2182 2894 7.335924 GGCGTCTGCTAATCCCATATTTATTTA 59.664 37.037 0.00 0.00 42.25 1.40
2257 2970 2.569059 CACAGGGATATCAAGCCACAG 58.431 52.381 4.83 0.00 30.46 3.66
2264 2977 5.103771 AGGGATATCAAGCCACAGAATCTTT 60.104 40.000 4.83 0.00 30.46 2.52
2276 2989 5.163683 CCACAGAATCTTTTGGTATGCTGAG 60.164 44.000 0.00 0.00 0.00 3.35
2395 3108 2.289002 CCAGCTGAAACTGTGTGACTTC 59.711 50.000 17.39 0.00 35.83 3.01
2401 3114 0.249911 AACTGTGTGACTTCGGGAGC 60.250 55.000 0.00 0.00 0.00 4.70
2428 3141 5.382664 AAGTTCTTGTTAAGGGAGAACCA 57.617 39.130 16.17 0.00 46.49 3.67
2742 3455 3.521560 TCTAGTGCTTAGCAATCGGTTG 58.478 45.455 11.30 3.38 41.47 3.77
2845 3558 6.405538 GGAAGAAATTAAATGCATGAACCCA 58.594 36.000 0.00 0.00 0.00 4.51
2961 3674 3.736252 GTGCATATCAGCCTACTAACACG 59.264 47.826 0.00 0.00 0.00 4.49
3068 3781 7.875041 CCTAAGATGCACTGCTGTAAGTATATT 59.125 37.037 1.98 0.00 35.30 1.28
3119 3834 7.279536 CACAGAGAATACTGCACTCATACAATT 59.720 37.037 4.32 0.00 41.06 2.32
3141 3856 8.644619 CAATTCTTTTGCAATGATCTTGTGTAG 58.355 33.333 0.00 0.00 0.00 2.74
3184 3899 5.248477 TCTCTATTAACTTGCTGTCCAGGTT 59.752 40.000 0.00 0.00 44.72 3.50
3245 3960 2.126951 GGTACCCGCCTTCCGAATA 58.873 57.895 0.00 0.00 40.02 1.75
3299 4014 3.685756 GCCTAACGGTAAGTAATGCAACA 59.314 43.478 0.00 0.00 0.00 3.33
3406 4122 6.465084 ACACCTAGTCTTATTTTCGCTTTCT 58.535 36.000 0.00 0.00 0.00 2.52
3413 4129 6.912591 AGTCTTATTTTCGCTTTCTGTTTGTG 59.087 34.615 0.00 0.00 0.00 3.33
3465 4181 1.410153 GCGGCAAAATTGATCCCAGAT 59.590 47.619 0.00 0.00 0.00 2.90
3512 4228 2.786027 CGTGACTATGAGATGCTTGTCG 59.214 50.000 0.00 0.00 0.00 4.35
3544 4260 1.468054 GGAATTGCATCGACAAGTGCC 60.468 52.381 6.29 0.00 40.56 5.01
3545 4261 1.199789 GAATTGCATCGACAAGTGCCA 59.800 47.619 6.29 0.00 40.56 4.92
3698 4420 3.190535 GCTTGACAATGTAACCGGTTCAT 59.809 43.478 26.16 22.25 0.00 2.57
3731 4453 0.035056 AACCCTCGCCTGAGAATTGG 60.035 55.000 0.00 0.00 45.57 3.16
3811 4534 4.552883 TGATCCTAGTATTGGGTCCTCA 57.447 45.455 0.00 0.00 33.92 3.86
3812 4535 4.890988 TGATCCTAGTATTGGGTCCTCAA 58.109 43.478 0.00 0.00 33.92 3.02
3831 4554 6.431234 TCCTCAAGATTTTCCTAGTTTCTTGC 59.569 38.462 6.18 0.00 41.80 4.01
3837 4560 2.631418 TCCTAGTTTCTTGCTCGTCG 57.369 50.000 0.00 0.00 0.00 5.12
3841 4565 0.387929 AGTTTCTTGCTCGTCGGACA 59.612 50.000 9.10 0.00 0.00 4.02
3843 4567 0.599204 TTTCTTGCTCGTCGGACACC 60.599 55.000 9.10 0.00 0.00 4.16
3913 4639 4.668576 CAGTGGTGCTATGTACTTGTTG 57.331 45.455 0.00 0.00 0.00 3.33
3914 4640 4.065088 CAGTGGTGCTATGTACTTGTTGT 58.935 43.478 0.00 0.00 0.00 3.32
3959 4689 2.557924 ACGTGCCATGATTTGTGTTCAT 59.442 40.909 0.00 0.00 34.15 2.57
3978 4708 5.689383 TCATCTTGTTTTGGTTGTAGCTC 57.311 39.130 0.00 0.00 0.00 4.09
4044 4776 4.314961 TGTATGCAACTCAGTCGTTCAAT 58.685 39.130 0.00 0.00 0.00 2.57
4051 4783 5.554636 CAACTCAGTCGTTCAATCTTATGC 58.445 41.667 0.00 0.00 0.00 3.14
4062 4794 3.763360 TCAATCTTATGCTGTGGGGTTTG 59.237 43.478 0.00 0.00 0.00 2.93
4076 4808 4.395231 GTGGGGTTTGCTTATACAGTCTTC 59.605 45.833 0.00 0.00 0.00 2.87
4079 4811 5.816258 GGGGTTTGCTTATACAGTCTTCTAC 59.184 44.000 0.00 0.00 0.00 2.59
4090 4822 2.232941 CAGTCTTCTACGGTTGGGCTTA 59.767 50.000 0.00 0.00 0.00 3.09
4091 4823 2.901839 AGTCTTCTACGGTTGGGCTTAA 59.098 45.455 0.00 0.00 0.00 1.85
4092 4824 2.998670 GTCTTCTACGGTTGGGCTTAAC 59.001 50.000 0.00 0.00 0.00 2.01
4162 4898 3.524541 CTGGAAGCATACCCAATTTTGC 58.475 45.455 0.00 0.00 35.34 3.68
4163 4899 3.172339 TGGAAGCATACCCAATTTTGCT 58.828 40.909 0.00 0.00 46.85 3.91
4164 4900 3.055963 TGGAAGCATACCCAATTTTGCTG 60.056 43.478 0.00 0.00 44.26 4.41
4165 4901 3.055891 GGAAGCATACCCAATTTTGCTGT 60.056 43.478 0.00 0.00 44.26 4.40
4166 4902 3.598019 AGCATACCCAATTTTGCTGTG 57.402 42.857 0.00 0.00 43.44 3.66
4167 4903 3.164268 AGCATACCCAATTTTGCTGTGA 58.836 40.909 0.00 0.00 43.44 3.58
4173 4935 4.881920 ACCCAATTTTGCTGTGAATGTAC 58.118 39.130 0.00 0.00 0.00 2.90
4179 4941 3.788227 TTGCTGTGAATGTACTCCCTT 57.212 42.857 0.00 0.00 0.00 3.95
4180 4942 3.057969 TGCTGTGAATGTACTCCCTTG 57.942 47.619 0.00 0.00 0.00 3.61
4183 4945 3.055385 GCTGTGAATGTACTCCCTTGGTA 60.055 47.826 0.00 0.00 0.00 3.25
4248 5010 9.640952 TTCCTCTGTAATTTAATATCCCCTTTG 57.359 33.333 0.00 0.00 0.00 2.77
4249 5011 8.787818 TCCTCTGTAATTTAATATCCCCTTTGT 58.212 33.333 0.00 0.00 0.00 2.83
4250 5012 9.067986 CCTCTGTAATTTAATATCCCCTTTGTC 57.932 37.037 0.00 0.00 0.00 3.18
4251 5013 8.990163 TCTGTAATTTAATATCCCCTTTGTCC 57.010 34.615 0.00 0.00 0.00 4.02
4252 5014 8.787818 TCTGTAATTTAATATCCCCTTTGTCCT 58.212 33.333 0.00 0.00 0.00 3.85
4265 5027 9.642343 ATCCCCTTTGTCCTAAAATATAAGAAC 57.358 33.333 0.00 0.00 0.00 3.01
4266 5028 8.616598 TCCCCTTTGTCCTAAAATATAAGAACA 58.383 33.333 0.00 0.00 0.00 3.18
4267 5029 9.250246 CCCCTTTGTCCTAAAATATAAGAACAA 57.750 33.333 0.00 0.00 0.00 2.83
4300 5062 8.815565 AATGTCTTATACTCTCTCTGTCTCAA 57.184 34.615 0.00 0.00 0.00 3.02
4301 5063 8.815565 ATGTCTTATACTCTCTCTGTCTCAAA 57.184 34.615 0.00 0.00 0.00 2.69
4302 5064 8.637196 TGTCTTATACTCTCTCTGTCTCAAAA 57.363 34.615 0.00 0.00 0.00 2.44
4303 5065 9.249053 TGTCTTATACTCTCTCTGTCTCAAAAT 57.751 33.333 0.00 0.00 0.00 1.82
4349 5111 8.996024 AAAAATGTTCTTATATTTTGGGACGG 57.004 30.769 0.00 0.00 35.87 4.79
4350 5112 7.948034 AAATGTTCTTATATTTTGGGACGGA 57.052 32.000 0.00 0.00 0.00 4.69
4351 5113 7.568199 AATGTTCTTATATTTTGGGACGGAG 57.432 36.000 0.00 0.00 0.00 4.63
4352 5114 5.433526 TGTTCTTATATTTTGGGACGGAGG 58.566 41.667 0.00 0.00 0.00 4.30
4353 5115 4.699925 TCTTATATTTTGGGACGGAGGG 57.300 45.455 0.00 0.00 0.00 4.30
4354 5116 4.300345 TCTTATATTTTGGGACGGAGGGA 58.700 43.478 0.00 0.00 0.00 4.20
4355 5117 4.347000 TCTTATATTTTGGGACGGAGGGAG 59.653 45.833 0.00 0.00 0.00 4.30
4356 5118 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
4357 5119 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
4358 5120 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
4359 5121 2.852714 TTTGGGACGGAGGGAGTATA 57.147 50.000 0.00 0.00 0.00 1.47
4360 5122 2.852714 TTGGGACGGAGGGAGTATAA 57.147 50.000 0.00 0.00 0.00 0.98
4361 5123 2.376695 TGGGACGGAGGGAGTATAAG 57.623 55.000 0.00 0.00 0.00 1.73
4365 5127 3.294214 GGACGGAGGGAGTATAAGACAA 58.706 50.000 0.00 0.00 0.00 3.18
4384 5146 4.997565 ACAATTTTTGACCTGTGACACTG 58.002 39.130 7.20 6.31 0.00 3.66
4385 5147 4.142182 ACAATTTTTGACCTGTGACACTGG 60.142 41.667 25.30 25.30 42.22 4.00
4386 5148 1.388547 TTTTGACCTGTGACACTGGC 58.611 50.000 26.46 19.92 40.43 4.85
4387 5149 0.465460 TTTGACCTGTGACACTGGCC 60.465 55.000 26.46 18.78 40.43 5.36
4388 5150 2.357517 GACCTGTGACACTGGCCG 60.358 66.667 26.46 8.21 40.43 6.13
4389 5151 3.161450 ACCTGTGACACTGGCCGT 61.161 61.111 26.46 8.97 40.43 5.68
4414 7134 6.809196 TGTGAAAAACGTCTTACAATTTTGCT 59.191 30.769 0.00 0.00 0.00 3.91
4429 7149 6.310224 ACAATTTTGCTTGGTATTATGTTCGC 59.690 34.615 0.00 0.00 0.00 4.70
4432 7152 3.339141 TGCTTGGTATTATGTTCGCACA 58.661 40.909 0.00 0.00 37.31 4.57
4439 7159 5.412904 TGGTATTATGTTCGCACAATGTCAA 59.587 36.000 0.00 0.00 36.16 3.18
4443 7163 6.503616 TTATGTTCGCACAATGTCAAAAAC 57.496 33.333 0.00 0.00 36.16 2.43
4444 7164 3.838120 TGTTCGCACAATGTCAAAAACA 58.162 36.364 0.00 0.00 43.51 2.83
4447 7167 4.103365 TCGCACAATGTCAAAAACAGTT 57.897 36.364 0.00 0.00 42.37 3.16
4485 7205 6.843752 TGGATGGAGTTCCTAACACTAAAAA 58.156 36.000 0.00 0.00 36.68 1.94
4487 7207 6.940867 GGATGGAGTTCCTAACACTAAAAAGT 59.059 38.462 0.00 0.00 36.82 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 96 0.692756 CCCTTTCCTCTCCCCTCTCC 60.693 65.000 0.00 0.00 0.00 3.71
153 159 0.598562 GATCGCTGGATTCTCGGCTA 59.401 55.000 0.00 0.00 36.91 3.93
156 162 0.958091 AGAGATCGCTGGATTCTCGG 59.042 55.000 0.00 0.00 34.64 4.63
157 163 1.399599 CGAGAGATCGCTGGATTCTCG 60.400 57.143 2.76 8.72 44.18 4.04
177 183 2.548920 CGATTCATACCTCCTCCTTGCC 60.549 54.545 0.00 0.00 0.00 4.52
180 196 1.341531 CGCGATTCATACCTCCTCCTT 59.658 52.381 0.00 0.00 0.00 3.36
321 344 0.246086 AGCACGAGAAGCAGGAAGAG 59.754 55.000 0.00 0.00 0.00 2.85
353 376 2.181021 GTCGTAGCCAGGTCACCG 59.819 66.667 0.00 0.00 0.00 4.94
354 377 0.966370 AGAGTCGTAGCCAGGTCACC 60.966 60.000 0.00 0.00 0.00 4.02
355 378 0.171455 CAGAGTCGTAGCCAGGTCAC 59.829 60.000 0.00 0.00 0.00 3.67
367 400 2.415010 CGGATCCTGGCAGAGTCG 59.585 66.667 17.94 10.30 0.00 4.18
383 416 3.788766 CCGTCAGGAAAAGGCGCG 61.789 66.667 0.00 0.00 41.02 6.86
407 440 1.386533 CAGAGATCGCAAAATGGCCT 58.613 50.000 3.32 0.00 0.00 5.19
428 461 0.029433 GAATCCTCGCGCAAATTCCC 59.971 55.000 8.75 0.00 0.00 3.97
474 507 1.084370 CCCTCCTAAGAAGCAACGCG 61.084 60.000 3.53 3.53 0.00 6.01
481 514 2.420687 GCACCACATCCCTCCTAAGAAG 60.421 54.545 0.00 0.00 0.00 2.85
561 594 9.950680 GCAGTAAATAGCAGAAATATTTTAGCA 57.049 29.630 20.77 11.55 35.17 3.49
603 641 1.418342 CTGGGTACGATTTGACGGCG 61.418 60.000 4.80 4.80 37.61 6.46
684 966 3.059529 CAGCGAATGCATCTCATCTCTTG 60.060 47.826 0.00 0.00 46.23 3.02
715 1035 0.734253 CGCTCGAGAAAGTGGACCTG 60.734 60.000 18.75 0.00 0.00 4.00
751 1096 2.167861 GCTCGGCGACCATGTTCTC 61.168 63.158 4.99 0.00 0.00 2.87
765 1110 2.493713 AACTATTAGGTCTGCGCTCG 57.506 50.000 9.73 0.00 0.00 5.03
803 1149 2.579873 AGCATAGCCAATTTGAGCGAT 58.420 42.857 0.00 0.00 0.00 4.58
868 1227 8.699749 GGTAGCAACAAAATTCAGAATAAACAC 58.300 33.333 0.00 0.00 0.00 3.32
873 1232 6.653320 ACGAGGTAGCAACAAAATTCAGAATA 59.347 34.615 0.00 0.00 0.00 1.75
876 1235 4.385825 ACGAGGTAGCAACAAAATTCAGA 58.614 39.130 0.00 0.00 0.00 3.27
879 1238 6.092259 AGTCATACGAGGTAGCAACAAAATTC 59.908 38.462 0.00 0.00 0.00 2.17
918 1277 4.616802 GTGTTTTGGTGTATCTGCAAATCG 59.383 41.667 0.00 0.00 0.00 3.34
957 1316 0.306840 CGATTCAGCAGCGCATCAAT 59.693 50.000 11.47 0.00 0.00 2.57
1014 1373 4.329545 TGCCCAGACGGAGCAACC 62.330 66.667 0.00 0.00 36.08 3.77
1023 1382 0.819259 TGCTGTTCTTGTGCCCAGAC 60.819 55.000 0.00 0.00 0.00 3.51
1168 1527 4.369182 AGCCAATCGTTAGGATTAAGTCG 58.631 43.478 0.00 0.00 43.52 4.18
1218 1577 7.502226 TCTGTTCCCTTGCCATTAATAATAGTG 59.498 37.037 0.00 0.00 0.00 2.74
1385 1744 2.992543 CAATTATGTTGTTGGCCCAACG 59.007 45.455 21.09 0.22 46.13 4.10
1406 1765 2.018542 TAGGACATTTAGCACGCCAC 57.981 50.000 0.00 0.00 0.00 5.01
1433 1792 7.718314 AGCATTAGCAGAGATTGACAATAATGA 59.282 33.333 16.41 0.00 45.49 2.57
1434 1793 7.872881 AGCATTAGCAGAGATTGACAATAATG 58.127 34.615 0.00 6.89 45.49 1.90
1435 1794 8.997323 GTAGCATTAGCAGAGATTGACAATAAT 58.003 33.333 0.00 0.00 45.49 1.28
1436 1795 7.442364 GGTAGCATTAGCAGAGATTGACAATAA 59.558 37.037 0.00 0.00 45.49 1.40
1437 1796 6.931281 GGTAGCATTAGCAGAGATTGACAATA 59.069 38.462 0.00 0.00 45.49 1.90
1438 1797 5.762218 GGTAGCATTAGCAGAGATTGACAAT 59.238 40.000 0.00 0.00 45.49 2.71
1439 1798 5.104776 AGGTAGCATTAGCAGAGATTGACAA 60.105 40.000 0.00 0.00 45.49 3.18
1440 1799 4.406972 AGGTAGCATTAGCAGAGATTGACA 59.593 41.667 0.00 0.00 45.49 3.58
1441 1800 4.954875 AGGTAGCATTAGCAGAGATTGAC 58.045 43.478 0.00 0.00 45.49 3.18
1461 1829 8.233190 CAGCTCAACAAACTATTCTAAGAAAGG 58.767 37.037 0.00 0.00 0.00 3.11
1535 1904 0.323087 TAGCTCACGGTCTGCAGGTA 60.323 55.000 15.13 0.00 0.00 3.08
1619 1988 7.229306 TGCCAATAAATAATAGACAAGCCTGAG 59.771 37.037 0.00 0.00 0.00 3.35
1627 1996 5.241506 GCTGGCTGCCAATAAATAATAGACA 59.758 40.000 23.51 0.00 30.80 3.41
2012 2719 1.474478 ACAGTCTCAGGCACATACTCG 59.526 52.381 0.00 0.00 0.00 4.18
2131 2838 4.819769 AGTATAACGCGGTACCAAAAAGA 58.180 39.130 5.74 0.00 0.00 2.52
2132 2839 5.318349 CAAGTATAACGCGGTACCAAAAAG 58.682 41.667 5.74 0.13 0.00 2.27
2146 2858 2.311124 AGCAGACGCCCAAGTATAAC 57.689 50.000 0.00 0.00 39.83 1.89
2155 2867 0.685097 TATGGGATTAGCAGACGCCC 59.315 55.000 0.00 0.00 39.83 6.13
2181 2893 7.445121 CAGAGCCCTACATATCTGTCAAAATA 58.555 38.462 0.00 0.00 36.79 1.40
2182 2894 6.294473 CAGAGCCCTACATATCTGTCAAAAT 58.706 40.000 0.00 0.00 36.79 1.82
2257 2970 6.749923 AGTTCTCAGCATACCAAAAGATTC 57.250 37.500 0.00 0.00 0.00 2.52
2264 2977 5.738619 TGAGTAAGTTCTCAGCATACCAA 57.261 39.130 0.00 0.00 39.20 3.67
2276 2989 6.459923 AGACCAACAGAAGATGAGTAAGTTC 58.540 40.000 0.00 0.00 0.00 3.01
2395 3108 0.385974 CAAGAACTTTTGCGCTCCCG 60.386 55.000 9.73 0.00 37.57 5.14
2401 3114 4.274950 TCTCCCTTAACAAGAACTTTTGCG 59.725 41.667 0.00 0.00 0.00 4.85
2428 3141 7.873719 TCGGGAACAAATGTATGATATGTTT 57.126 32.000 0.00 0.00 34.59 2.83
2628 3341 5.806654 AACAAAATGACCTTGTAAGCCAT 57.193 34.783 0.00 0.00 35.98 4.40
2710 3423 5.699458 TGCTAAGCACTAGAACTGTTTAACC 59.301 40.000 0.00 0.00 31.71 2.85
2714 3427 5.120830 CGATTGCTAAGCACTAGAACTGTTT 59.879 40.000 0.00 0.00 38.71 2.83
2845 3558 9.308000 TGTGGGAATTTGAACTCTGTATAATTT 57.692 29.630 0.00 0.00 0.00 1.82
2854 3567 7.309438 GCTTTAATCTGTGGGAATTTGAACTCT 60.309 37.037 0.00 0.00 0.00 3.24
2961 3674 7.801716 TTTATGGAATACCTACAGATTGCAC 57.198 36.000 0.00 0.00 36.40 4.57
3068 3781 4.587891 TCAACCACATGATGTGCATTCTA 58.412 39.130 19.69 4.62 46.51 2.10
3095 3810 7.710044 AGAATTGTATGAGTGCAGTATTCTCTG 59.290 37.037 8.53 0.00 38.35 3.35
3096 3811 7.790027 AGAATTGTATGAGTGCAGTATTCTCT 58.210 34.615 8.53 0.00 0.00 3.10
3119 3834 6.882610 ACTACACAAGATCATTGCAAAAGA 57.117 33.333 1.71 5.20 0.00 2.52
3184 3899 1.150536 GGGGTGAACAAGTGCCTCA 59.849 57.895 0.00 0.00 0.00 3.86
3299 4014 3.091545 CCAGCCACCACAAATAATCACT 58.908 45.455 0.00 0.00 0.00 3.41
3364 4080 3.572255 GGTGTTGAAAATAAGACCAGGCA 59.428 43.478 0.00 0.00 42.03 4.75
3406 4122 3.378112 CCTTTCAGTTCTGAGCACAAACA 59.622 43.478 2.77 0.00 0.00 2.83
3413 4129 3.013219 GGGATTCCTTTCAGTTCTGAGC 58.987 50.000 2.01 0.00 0.00 4.26
3465 4181 0.248565 AGCTCTGCTTTCTCGCATGA 59.751 50.000 0.00 0.00 39.52 3.07
3512 4228 0.452784 GCAATTCCAACGACTCGTGC 60.453 55.000 4.50 0.00 39.99 5.34
3584 4301 8.821686 TTCCAACAACCATAATAGTTCATCAT 57.178 30.769 0.00 0.00 0.00 2.45
3698 4420 2.622452 CGAGGGTTAGTACAAGGGAGGA 60.622 54.545 0.00 0.00 0.00 3.71
3731 4453 0.959553 CAGATCAGCCATGGCAATCC 59.040 55.000 37.18 22.47 44.88 3.01
3788 4510 5.476983 TGAGGACCCAATACTAGGATCAAT 58.523 41.667 0.00 0.00 0.00 2.57
3792 4514 5.157770 TCTTGAGGACCCAATACTAGGAT 57.842 43.478 0.00 0.00 0.00 3.24
3793 4515 4.620086 TCTTGAGGACCCAATACTAGGA 57.380 45.455 0.00 0.00 0.00 2.94
3794 4516 5.896073 AATCTTGAGGACCCAATACTAGG 57.104 43.478 0.00 0.00 0.00 3.02
3795 4517 6.768381 GGAAAATCTTGAGGACCCAATACTAG 59.232 42.308 0.00 0.00 0.00 2.57
3796 4518 6.447084 AGGAAAATCTTGAGGACCCAATACTA 59.553 38.462 0.00 0.00 0.00 1.82
3797 4519 5.254032 AGGAAAATCTTGAGGACCCAATACT 59.746 40.000 0.00 0.00 0.00 2.12
3798 4520 5.510430 AGGAAAATCTTGAGGACCCAATAC 58.490 41.667 0.00 0.00 0.00 1.89
3800 4522 4.682021 AGGAAAATCTTGAGGACCCAAT 57.318 40.909 0.00 0.00 0.00 3.16
3811 4534 5.998363 ACGAGCAAGAAACTAGGAAAATCTT 59.002 36.000 0.00 0.00 0.00 2.40
3812 4535 5.552178 ACGAGCAAGAAACTAGGAAAATCT 58.448 37.500 0.00 0.00 0.00 2.40
3837 4560 3.785122 AAACCAGGTGGCGGTGTCC 62.785 63.158 0.00 0.00 36.67 4.02
3841 4565 0.696501 ATCTAAAACCAGGTGGCGGT 59.303 50.000 0.00 0.00 39.32 5.68
3843 4567 1.743394 GGAATCTAAAACCAGGTGGCG 59.257 52.381 0.00 0.00 39.32 5.69
3851 4576 6.447162 CCTTCAACAACAGGAATCTAAAACC 58.553 40.000 0.00 0.00 30.81 3.27
3896 4622 3.933332 GGAGACAACAAGTACATAGCACC 59.067 47.826 0.00 0.00 0.00 5.01
3897 4623 4.822026 AGGAGACAACAAGTACATAGCAC 58.178 43.478 0.00 0.00 0.00 4.40
3898 4624 6.791867 ATAGGAGACAACAAGTACATAGCA 57.208 37.500 0.00 0.00 0.00 3.49
3899 4625 7.265673 TCAATAGGAGACAACAAGTACATAGC 58.734 38.462 0.00 0.00 0.00 2.97
3959 4689 6.463995 AAATGAGCTACAACCAAAACAAGA 57.536 33.333 0.00 0.00 0.00 3.02
4044 4776 1.075374 AGCAAACCCCACAGCATAAGA 59.925 47.619 0.00 0.00 0.00 2.10
4051 4783 3.686016 ACTGTATAAGCAAACCCCACAG 58.314 45.455 0.00 0.00 38.26 3.66
4062 4794 5.041940 CCAACCGTAGAAGACTGTATAAGC 58.958 45.833 0.00 0.00 0.00 3.09
4076 4808 4.841443 AAAAAGTTAAGCCCAACCGTAG 57.159 40.909 0.00 0.00 0.00 3.51
4142 4878 3.055963 CAGCAAAATTGGGTATGCTTCCA 60.056 43.478 0.00 0.00 46.36 3.53
4157 4893 4.098914 AGGGAGTACATTCACAGCAAAA 57.901 40.909 0.00 0.00 0.00 2.44
4158 4894 3.788227 AGGGAGTACATTCACAGCAAA 57.212 42.857 0.00 0.00 0.00 3.68
4160 4896 2.290260 CCAAGGGAGTACATTCACAGCA 60.290 50.000 0.00 0.00 0.00 4.41
4161 4897 2.290323 ACCAAGGGAGTACATTCACAGC 60.290 50.000 0.00 0.00 0.00 4.40
4162 4898 3.703001 ACCAAGGGAGTACATTCACAG 57.297 47.619 0.00 0.00 0.00 3.66
4163 4899 5.570205 TTTACCAAGGGAGTACATTCACA 57.430 39.130 0.00 0.00 0.00 3.58
4164 4900 8.570068 TTAATTTACCAAGGGAGTACATTCAC 57.430 34.615 0.00 0.00 0.00 3.18
4165 4901 9.184523 CATTAATTTACCAAGGGAGTACATTCA 57.815 33.333 0.00 0.00 0.00 2.57
4166 4902 9.185680 ACATTAATTTACCAAGGGAGTACATTC 57.814 33.333 0.00 0.00 0.00 2.67
4167 4903 9.185680 GACATTAATTTACCAAGGGAGTACATT 57.814 33.333 0.00 0.00 0.00 2.71
4173 4935 5.190677 ACGGACATTAATTTACCAAGGGAG 58.809 41.667 0.00 0.00 0.00 4.30
4179 4941 5.075858 AGACGACGGACATTAATTTACCA 57.924 39.130 0.00 0.00 0.00 3.25
4180 4942 6.974622 TCTAAGACGACGGACATTAATTTACC 59.025 38.462 0.00 0.00 0.00 2.85
4183 4945 8.388103 CAAATCTAAGACGACGGACATTAATTT 58.612 33.333 0.00 0.00 0.00 1.82
4241 5003 8.817092 TGTTCTTATATTTTAGGACAAAGGGG 57.183 34.615 0.00 0.00 27.01 4.79
4274 5036 9.907229 TTGAGACAGAGAGAGTATAAGACATTA 57.093 33.333 0.00 0.00 0.00 1.90
4275 5037 8.815565 TTGAGACAGAGAGAGTATAAGACATT 57.184 34.615 0.00 0.00 0.00 2.71
4276 5038 8.815565 TTTGAGACAGAGAGAGTATAAGACAT 57.184 34.615 0.00 0.00 0.00 3.06
4277 5039 8.637196 TTTTGAGACAGAGAGAGTATAAGACA 57.363 34.615 0.00 0.00 0.00 3.41
4324 5086 8.808092 TCCGTCCCAAAATATAAGAACATTTTT 58.192 29.630 0.00 0.00 33.23 1.94
4325 5087 8.356000 TCCGTCCCAAAATATAAGAACATTTT 57.644 30.769 0.00 0.00 35.30 1.82
4326 5088 7.068226 CCTCCGTCCCAAAATATAAGAACATTT 59.932 37.037 0.00 0.00 0.00 2.32
4327 5089 6.546034 CCTCCGTCCCAAAATATAAGAACATT 59.454 38.462 0.00 0.00 0.00 2.71
4328 5090 6.062095 CCTCCGTCCCAAAATATAAGAACAT 58.938 40.000 0.00 0.00 0.00 2.71
4329 5091 5.433526 CCTCCGTCCCAAAATATAAGAACA 58.566 41.667 0.00 0.00 0.00 3.18
4330 5092 4.820173 CCCTCCGTCCCAAAATATAAGAAC 59.180 45.833 0.00 0.00 0.00 3.01
4331 5093 4.722781 TCCCTCCGTCCCAAAATATAAGAA 59.277 41.667 0.00 0.00 0.00 2.52
4332 5094 4.300345 TCCCTCCGTCCCAAAATATAAGA 58.700 43.478 0.00 0.00 0.00 2.10
4333 5095 4.102681 ACTCCCTCCGTCCCAAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
4334 5096 4.042174 ACTCCCTCCGTCCCAAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
4335 5097 3.660959 ACTCCCTCCGTCCCAAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
4336 5098 2.488836 ACTCCCTCCGTCCCAAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
4337 5099 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4338 5100 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
4339 5101 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
4340 5102 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
4341 5103 2.245546 TCTTATACTCCCTCCGTCCCAA 59.754 50.000 0.00 0.00 0.00 4.12
4342 5104 1.854939 TCTTATACTCCCTCCGTCCCA 59.145 52.381 0.00 0.00 0.00 4.37
4343 5105 2.237643 GTCTTATACTCCCTCCGTCCC 58.762 57.143 0.00 0.00 0.00 4.46
4344 5106 2.941480 TGTCTTATACTCCCTCCGTCC 58.059 52.381 0.00 0.00 0.00 4.79
4345 5107 5.532664 AATTGTCTTATACTCCCTCCGTC 57.467 43.478 0.00 0.00 0.00 4.79
4346 5108 5.952347 AAATTGTCTTATACTCCCTCCGT 57.048 39.130 0.00 0.00 0.00 4.69
4347 5109 6.821665 TCAAAAATTGTCTTATACTCCCTCCG 59.178 38.462 0.00 0.00 0.00 4.63
4348 5110 7.067129 GGTCAAAAATTGTCTTATACTCCCTCC 59.933 40.741 0.00 0.00 0.00 4.30
4349 5111 7.829706 AGGTCAAAAATTGTCTTATACTCCCTC 59.170 37.037 0.00 0.00 0.00 4.30
4350 5112 7.611855 CAGGTCAAAAATTGTCTTATACTCCCT 59.388 37.037 0.00 0.00 0.00 4.20
4351 5113 7.393515 ACAGGTCAAAAATTGTCTTATACTCCC 59.606 37.037 0.00 0.00 0.00 4.30
4352 5114 8.237267 CACAGGTCAAAAATTGTCTTATACTCC 58.763 37.037 0.00 0.00 0.00 3.85
4353 5115 8.999431 TCACAGGTCAAAAATTGTCTTATACTC 58.001 33.333 0.00 0.00 0.00 2.59
4354 5116 8.784043 GTCACAGGTCAAAAATTGTCTTATACT 58.216 33.333 0.00 0.00 0.00 2.12
4355 5117 8.564574 TGTCACAGGTCAAAAATTGTCTTATAC 58.435 33.333 0.00 0.00 0.00 1.47
4356 5118 8.564574 GTGTCACAGGTCAAAAATTGTCTTATA 58.435 33.333 0.00 0.00 0.00 0.98
4357 5119 7.285401 AGTGTCACAGGTCAAAAATTGTCTTAT 59.715 33.333 5.62 0.00 0.00 1.73
4358 5120 6.601613 AGTGTCACAGGTCAAAAATTGTCTTA 59.398 34.615 5.62 0.00 0.00 2.10
4359 5121 5.418840 AGTGTCACAGGTCAAAAATTGTCTT 59.581 36.000 5.62 0.00 0.00 3.01
4360 5122 4.949856 AGTGTCACAGGTCAAAAATTGTCT 59.050 37.500 5.62 0.00 0.00 3.41
4361 5123 5.036737 CAGTGTCACAGGTCAAAAATTGTC 58.963 41.667 5.62 0.00 0.00 3.18
4365 5127 2.362077 GCCAGTGTCACAGGTCAAAAAT 59.638 45.455 15.20 0.00 0.00 1.82
4384 5146 4.601315 GACGTTTTTCACACGGCC 57.399 55.556 0.00 0.00 39.97 6.13
4385 5147 2.030701 TGTAAGACGTTTTTCACACGGC 59.969 45.455 0.00 0.00 46.70 5.68
4386 5148 3.929417 TGTAAGACGTTTTTCACACGG 57.071 42.857 0.00 0.00 42.14 4.94
4387 5149 6.784068 AAATTGTAAGACGTTTTTCACACG 57.216 33.333 0.00 0.00 43.52 4.49
4388 5150 6.892430 GCAAAATTGTAAGACGTTTTTCACAC 59.108 34.615 0.00 0.00 0.00 3.82
4389 5151 6.809196 AGCAAAATTGTAAGACGTTTTTCACA 59.191 30.769 0.00 0.00 0.00 3.58
4390 5152 7.216920 AGCAAAATTGTAAGACGTTTTTCAC 57.783 32.000 0.00 0.00 0.00 3.18
4391 5153 7.201478 CCAAGCAAAATTGTAAGACGTTTTTCA 60.201 33.333 0.00 0.00 0.00 2.69
4392 5154 7.116819 CCAAGCAAAATTGTAAGACGTTTTTC 58.883 34.615 0.00 0.00 0.00 2.29
4394 5156 6.103330 ACCAAGCAAAATTGTAAGACGTTTT 58.897 32.000 0.00 0.00 0.00 2.43
4395 5157 5.656480 ACCAAGCAAAATTGTAAGACGTTT 58.344 33.333 0.00 0.00 0.00 3.60
4396 5158 5.257082 ACCAAGCAAAATTGTAAGACGTT 57.743 34.783 0.00 0.00 0.00 3.99
4402 7122 9.347934 CGAACATAATACCAAGCAAAATTGTAA 57.652 29.630 0.00 0.00 0.00 2.41
4414 7134 5.412904 TGACATTGTGCGAACATAATACCAA 59.587 36.000 0.00 0.00 35.64 3.67
4426 7146 3.773860 ACTGTTTTTGACATTGTGCGA 57.226 38.095 0.00 0.00 37.69 5.10
4447 7167 9.793259 GGAACTCCATCCATCACTTAATATAAA 57.207 33.333 0.00 0.00 39.42 1.40
4454 7174 5.724370 TGTTAGGAACTCCATCCATCACTTA 59.276 40.000 0.00 0.00 42.27 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.