Multiple sequence alignment - TraesCS3A01G164100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G164100 chr3A 100.000 2237 0 0 1 2237 168831753 168833989 0.000000e+00 4132
1 TraesCS3A01G164100 chr3A 84.541 207 15 7 188 388 79396387 79396582 2.930000e-44 189
2 TraesCS3A01G164100 chr3B 92.337 1592 88 16 441 2022 236152369 236150802 0.000000e+00 2233
3 TraesCS3A01G164100 chr3B 90.909 220 17 2 2021 2237 236150544 236150325 2.170000e-75 292
4 TraesCS3A01G164100 chr3B 82.061 262 20 10 142 394 114152203 114151960 4.870000e-47 198
5 TraesCS3A01G164100 chr3D 91.835 1482 86 15 1 1474 159436214 159434760 0.000000e+00 2034
6 TraesCS3A01G164100 chr3D 86.161 831 77 26 1430 2237 159434762 159433947 0.000000e+00 863
7 TraesCS3A01G164100 chr3D 83.755 277 23 10 139 404 67687607 67687872 2.220000e-60 243


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G164100 chr3A 168831753 168833989 2236 False 4132.0 4132 100.000 1 2237 1 chr3A.!!$F2 2236
1 TraesCS3A01G164100 chr3B 236150325 236152369 2044 True 1262.5 2233 91.623 441 2237 2 chr3B.!!$R2 1796
2 TraesCS3A01G164100 chr3D 159433947 159436214 2267 True 1448.5 2034 88.998 1 2237 2 chr3D.!!$R1 2236

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 123 0.034896 GCGGGAGGTTTTGAGAGTCA 59.965 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1804 1870 0.258774 TTTTAGATGGGCTGGGGAGC 59.741 55.0 0.0 0.0 0.0 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.009115 CAGGACCACCCCACGGAT 61.009 66.667 0.00 0.00 36.73 4.18
53 54 0.679505 CACCCCACGGATCGATACAT 59.320 55.000 8.69 0.00 0.00 2.29
56 57 0.670546 CCCACGGATCGATACATGCC 60.671 60.000 8.69 0.00 0.00 4.40
57 58 0.670546 CCACGGATCGATACATGCCC 60.671 60.000 8.69 0.00 0.00 5.36
69 70 1.378382 CATGCCCACGTTGGATGGA 60.378 57.895 10.41 0.00 40.96 3.41
96 97 1.208776 TGTCCAGACAGCATGATCCAG 59.791 52.381 0.00 0.00 39.69 3.86
114 115 1.376812 GACGGATGCGGGAGGTTTT 60.377 57.895 12.44 0.00 0.00 2.43
115 116 1.644786 GACGGATGCGGGAGGTTTTG 61.645 60.000 12.44 0.00 0.00 2.44
116 117 1.376683 CGGATGCGGGAGGTTTTGA 60.377 57.895 0.00 0.00 0.00 2.69
118 119 0.035439 GGATGCGGGAGGTTTTGAGA 60.035 55.000 0.00 0.00 0.00 3.27
122 123 0.034896 GCGGGAGGTTTTGAGAGTCA 59.965 55.000 0.00 0.00 0.00 3.41
124 125 1.344763 CGGGAGGTTTTGAGAGTCAGT 59.655 52.381 0.00 0.00 0.00 3.41
129 130 3.545703 AGGTTTTGAGAGTCAGTGTTGG 58.454 45.455 0.00 0.00 0.00 3.77
136 137 2.233431 GAGAGTCAGTGTTGGAGATGCT 59.767 50.000 0.00 0.00 0.00 3.79
137 138 2.636893 AGAGTCAGTGTTGGAGATGCTT 59.363 45.455 0.00 0.00 0.00 3.91
145 146 5.700832 CAGTGTTGGAGATGCTTTAAGTACA 59.299 40.000 0.00 0.00 0.00 2.90
153 154 7.775093 TGGAGATGCTTTAAGTACAATGCTTAT 59.225 33.333 0.00 0.00 31.66 1.73
198 199 6.929049 TCTTATGTTCCATAGTAATTGCTCCG 59.071 38.462 0.00 0.00 0.00 4.63
206 207 1.134491 AGTAATTGCTCCGGGTACTGC 60.134 52.381 0.00 0.00 0.00 4.40
214 217 0.527565 TCCGGGTACTGCGTAGTTTC 59.472 55.000 12.53 5.76 38.36 2.78
225 228 1.852895 GCGTAGTTTCGATCGAGCATT 59.147 47.619 18.54 8.57 0.00 3.56
276 279 4.699257 AGCTGCTTTTGGTTTCTATCTCTG 59.301 41.667 0.00 0.00 0.00 3.35
279 282 5.620206 TGCTTTTGGTTTCTATCTCTGACA 58.380 37.500 0.00 0.00 0.00 3.58
284 287 9.237846 CTTTTGGTTTCTATCTCTGACAAAAAC 57.762 33.333 0.00 0.00 36.51 2.43
402 405 5.317733 GCCCAGAGCACTAGTATATAGTG 57.682 47.826 10.06 10.06 45.62 2.74
422 425 5.977635 AGTGTAATGAACGGATGAAGATGA 58.022 37.500 0.00 0.00 0.00 2.92
472 475 0.107848 AGGGCATACAACAGGTACGC 60.108 55.000 0.00 0.00 40.34 4.42
511 518 3.400255 ACGCACGATCTATGAGCTAGTA 58.600 45.455 0.00 0.00 0.00 1.82
542 549 2.363788 TCCAATCAACGGACGAAGAG 57.636 50.000 0.00 0.00 0.00 2.85
543 550 1.890489 TCCAATCAACGGACGAAGAGA 59.110 47.619 0.00 0.00 0.00 3.10
612 619 6.893958 CAGAATAAAGTAGAATCTGCACGT 57.106 37.500 0.46 0.00 32.05 4.49
642 651 9.887406 GTATGTGTTAAAAATCTTCCTTTTCGA 57.113 29.630 0.00 0.00 0.00 3.71
649 658 9.955208 TTAAAAATCTTCCTTTTCGAACCTAAC 57.045 29.630 0.00 0.00 0.00 2.34
654 663 2.036217 TCCTTTTCGAACCTAACAGCGA 59.964 45.455 0.00 0.00 0.00 4.93
693 702 2.958355 ACCAAACATTTGACAGGGTGAG 59.042 45.455 5.91 0.00 40.55 3.51
724 735 5.473039 AGCAGTGTTTTCCAAAATATCAGC 58.527 37.500 0.00 0.00 0.00 4.26
734 745 3.257873 CCAAAATATCAGCACCAACCACA 59.742 43.478 0.00 0.00 0.00 4.17
736 747 2.128771 ATATCAGCACCAACCACACC 57.871 50.000 0.00 0.00 0.00 4.16
737 748 0.037590 TATCAGCACCAACCACACCC 59.962 55.000 0.00 0.00 0.00 4.61
738 749 2.713531 ATCAGCACCAACCACACCCC 62.714 60.000 0.00 0.00 0.00 4.95
739 750 4.218686 AGCACCAACCACACCCCC 62.219 66.667 0.00 0.00 0.00 5.40
740 751 4.531426 GCACCAACCACACCCCCA 62.531 66.667 0.00 0.00 0.00 4.96
741 752 2.280416 CACCAACCACACCCCCAA 59.720 61.111 0.00 0.00 0.00 4.12
742 753 1.381872 CACCAACCACACCCCCAAA 60.382 57.895 0.00 0.00 0.00 3.28
743 754 1.382009 ACCAACCACACCCCCAAAC 60.382 57.895 0.00 0.00 0.00 2.93
744 755 2.494530 CCAACCACACCCCCAAACG 61.495 63.158 0.00 0.00 0.00 3.60
745 756 2.123640 AACCACACCCCCAAACGG 60.124 61.111 0.00 0.00 0.00 4.44
769 780 4.783055 TCACCTACAGCCTAACAAAACAA 58.217 39.130 0.00 0.00 0.00 2.83
774 785 4.792521 ACAGCCTAACAAAACAACACAA 57.207 36.364 0.00 0.00 0.00 3.33
779 790 4.926832 GCCTAACAAAACAACACAACAACT 59.073 37.500 0.00 0.00 0.00 3.16
780 791 5.164002 GCCTAACAAAACAACACAACAACTG 60.164 40.000 0.00 0.00 0.00 3.16
812 823 6.841443 ATCATAAGCTTTCTGTGATCGAAG 57.159 37.500 3.20 0.00 0.00 3.79
813 824 5.111989 TCATAAGCTTTCTGTGATCGAAGG 58.888 41.667 3.20 0.00 0.00 3.46
908 919 2.150397 AAACGAGCACCTGAGTACAC 57.850 50.000 0.00 0.00 0.00 2.90
919 930 2.427453 CCTGAGTACACGGCTCACTATT 59.573 50.000 0.00 0.00 37.98 1.73
920 931 3.119101 CCTGAGTACACGGCTCACTATTT 60.119 47.826 0.00 0.00 37.98 1.40
921 932 4.097437 CCTGAGTACACGGCTCACTATTTA 59.903 45.833 0.00 0.00 37.98 1.40
922 933 5.221263 CCTGAGTACACGGCTCACTATTTAT 60.221 44.000 0.00 0.00 37.98 1.40
932 943 5.577164 CGGCTCACTATTTATATGTACCTGC 59.423 44.000 0.00 0.00 0.00 4.85
938 949 5.932303 ACTATTTATATGTACCTGCGGCTTG 59.068 40.000 0.00 0.00 0.00 4.01
989 1000 2.271497 GCCAGCAGCAGTCCTCAT 59.729 61.111 0.00 0.00 42.97 2.90
990 1001 1.818785 GCCAGCAGCAGTCCTCATC 60.819 63.158 0.00 0.00 42.97 2.92
991 1002 1.521010 CCAGCAGCAGTCCTCATCG 60.521 63.158 0.00 0.00 0.00 3.84
1155 1166 3.786586 AGGCTCGACGACGACGAC 61.787 66.667 17.84 14.03 43.81 4.34
1179 1190 0.182775 AAGAAGAACGGTGGCTGGTT 59.817 50.000 0.00 0.00 0.00 3.67
1208 1219 4.041762 GTGGCCCCGGACCAATCA 62.042 66.667 16.74 0.00 39.39 2.57
1456 1511 7.063593 ACTCTATCTGTATACAGGAAGCAAGA 58.936 38.462 28.33 19.60 43.91 3.02
1543 1598 4.074259 TGATCAACATTTCAGACAGGTGG 58.926 43.478 0.00 0.00 0.00 4.61
1572 1627 1.202770 CCCCAGTCGACAAAAGGAAGT 60.203 52.381 19.50 0.00 0.00 3.01
1590 1645 3.730116 TGGAGGATAGCCACCTTCA 57.270 52.632 14.87 0.40 44.49 3.02
1626 1681 1.215423 GATGGAGGTAAGTTGCCCCAT 59.785 52.381 23.53 23.53 38.71 4.00
1638 1693 2.765969 CCCCATGAAGTGTGGCCT 59.234 61.111 3.32 0.00 35.35 5.19
1639 1694 1.679977 CCCCATGAAGTGTGGCCTG 60.680 63.158 3.32 0.00 35.35 4.85
1650 1705 4.367039 AGTGTGGCCTGTTAGTATGTTT 57.633 40.909 3.32 0.00 0.00 2.83
1659 1714 5.472137 GCCTGTTAGTATGTTTCCTGTGAAA 59.528 40.000 0.00 0.00 38.14 2.69
1719 1783 7.435068 GCTCATAAAGAGGTTAAGTTCAACA 57.565 36.000 0.00 0.00 44.86 3.33
1804 1870 2.010582 GCACTCCGGTCTGAGCCTAG 62.011 65.000 0.00 1.78 35.72 3.02
1845 1914 6.460103 AAGCCCATTCACCATATAGAAGAT 57.540 37.500 0.00 0.00 0.00 2.40
1954 2023 1.901464 GGAAGGACAAGCCGCCAAA 60.901 57.895 0.00 0.00 43.43 3.28
2067 2395 0.400213 TTGTTCGCAGTCCCCTCAAT 59.600 50.000 0.00 0.00 0.00 2.57
2124 2452 4.081254 AGAGAAAGAGTATGAGCATGCACA 60.081 41.667 20.21 20.21 0.00 4.57
2125 2453 4.582869 AGAAAGAGTATGAGCATGCACAA 58.417 39.130 21.69 8.64 0.00 3.33
2154 2486 4.041691 ACACAAGCAGTTCAGTTATACCCT 59.958 41.667 0.00 0.00 0.00 4.34
2155 2487 5.003804 CACAAGCAGTTCAGTTATACCCTT 58.996 41.667 0.00 0.00 0.00 3.95
2205 2538 0.921256 AACCCAGATCCCCTCCCTTG 60.921 60.000 0.00 0.00 0.00 3.61
2209 2542 1.855599 CCAGATCCCCTCCCTTGATTT 59.144 52.381 0.00 0.00 0.00 2.17
2210 2543 2.158549 CCAGATCCCCTCCCTTGATTTC 60.159 54.545 0.00 0.00 0.00 2.17
2227 2560 2.238942 TTCTGTGAGCACATGTCGTT 57.761 45.000 3.49 0.00 41.01 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.016706 GTGGGGTGGTCCTGACGG 62.017 72.222 0.00 0.00 35.33 4.79
29 30 2.687566 GATCCGTGGGGTGGTCCT 60.688 66.667 0.00 0.00 35.33 3.85
31 32 1.111116 TATCGATCCGTGGGGTGGTC 61.111 60.000 0.00 0.00 33.83 4.02
37 38 0.670546 GGCATGTATCGATCCGTGGG 60.671 60.000 11.62 0.00 0.00 4.61
45 46 0.461163 CCAACGTGGGCATGTATCGA 60.461 55.000 0.00 0.00 32.67 3.59
53 54 0.251564 AAATCCATCCAACGTGGGCA 60.252 50.000 3.23 0.00 38.32 5.36
56 57 0.098728 GCGAAATCCATCCAACGTGG 59.901 55.000 0.00 0.00 39.43 4.94
57 58 1.086696 AGCGAAATCCATCCAACGTG 58.913 50.000 0.00 0.00 0.00 4.49
81 82 0.463204 CCGTCTGGATCATGCTGTCT 59.537 55.000 0.00 0.00 37.49 3.41
96 97 1.376812 AAAACCTCCCGCATCCGTC 60.377 57.895 0.00 0.00 0.00 4.79
103 104 0.034896 TGACTCTCAAAACCTCCCGC 59.965 55.000 0.00 0.00 0.00 6.13
104 105 1.344763 ACTGACTCTCAAAACCTCCCG 59.655 52.381 0.00 0.00 0.00 5.14
114 115 2.028658 GCATCTCCAACACTGACTCTCA 60.029 50.000 0.00 0.00 0.00 3.27
115 116 2.233431 AGCATCTCCAACACTGACTCTC 59.767 50.000 0.00 0.00 0.00 3.20
116 117 2.255406 AGCATCTCCAACACTGACTCT 58.745 47.619 0.00 0.00 0.00 3.24
118 119 3.498774 AAAGCATCTCCAACACTGACT 57.501 42.857 0.00 0.00 0.00 3.41
122 123 5.865085 TGTACTTAAAGCATCTCCAACACT 58.135 37.500 0.00 0.00 0.00 3.55
124 125 6.349280 GCATTGTACTTAAAGCATCTCCAACA 60.349 38.462 0.00 0.00 0.00 3.33
183 184 4.307432 CAGTACCCGGAGCAATTACTATG 58.693 47.826 0.73 0.00 0.00 2.23
184 185 3.244112 GCAGTACCCGGAGCAATTACTAT 60.244 47.826 0.73 0.00 0.00 2.12
185 186 2.101917 GCAGTACCCGGAGCAATTACTA 59.898 50.000 0.73 0.00 0.00 1.82
186 187 1.134491 GCAGTACCCGGAGCAATTACT 60.134 52.381 0.73 0.00 0.00 2.24
189 190 1.449601 CGCAGTACCCGGAGCAATT 60.450 57.895 0.73 0.00 0.00 2.32
194 195 0.529378 AAACTACGCAGTACCCGGAG 59.471 55.000 0.73 12.72 45.11 4.63
198 199 2.457970 GATCGAAACTACGCAGTACCC 58.542 52.381 0.00 0.00 45.11 3.69
206 207 2.852413 ACAATGCTCGATCGAAACTACG 59.148 45.455 19.92 7.35 0.00 3.51
214 217 3.632189 TCAGTATCACAATGCTCGATCG 58.368 45.455 9.36 9.36 0.00 3.69
225 228 5.032846 AGAGGAGGGAAATTCAGTATCACA 58.967 41.667 0.00 0.00 0.00 3.58
395 398 9.645059 CATCTTCATCCGTTCATTACACTATAT 57.355 33.333 0.00 0.00 0.00 0.86
398 401 7.107639 TCATCTTCATCCGTTCATTACACTA 57.892 36.000 0.00 0.00 0.00 2.74
402 405 5.518847 TCGTTCATCTTCATCCGTTCATTAC 59.481 40.000 0.00 0.00 0.00 1.89
422 425 6.458478 CGAGAAACCTCATACAGTAGATCGTT 60.458 42.308 0.00 0.00 0.00 3.85
472 475 1.665679 CGTCTTCATCCGTTCATTGGG 59.334 52.381 0.00 0.00 0.00 4.12
511 518 3.751175 CGTTGATTGGATTGGTACAGTGT 59.249 43.478 0.00 0.00 42.39 3.55
642 651 4.098807 ACATTTTGGTTTCGCTGTTAGGTT 59.901 37.500 0.00 0.00 0.00 3.50
649 658 5.569059 GTCATCTAACATTTTGGTTTCGCTG 59.431 40.000 0.00 0.00 32.29 5.18
654 663 7.560368 TGTTTGGTCATCTAACATTTTGGTTT 58.440 30.769 0.00 0.00 32.29 3.27
693 702 5.705609 TTGGAAAACACTGCTAATTCTCC 57.294 39.130 0.00 0.00 0.00 3.71
724 735 1.381872 TTTGGGGGTGTGGTTGGTG 60.382 57.895 0.00 0.00 0.00 4.17
734 745 4.280019 GGTGAGCCGTTTGGGGGT 62.280 66.667 0.00 0.00 41.36 4.95
736 747 1.376812 GTAGGTGAGCCGTTTGGGG 60.377 63.158 0.00 0.00 40.50 4.96
737 748 0.673644 CTGTAGGTGAGCCGTTTGGG 60.674 60.000 0.00 0.00 40.50 4.12
738 749 1.298859 GCTGTAGGTGAGCCGTTTGG 61.299 60.000 0.00 0.00 40.50 3.28
739 750 1.298859 GGCTGTAGGTGAGCCGTTTG 61.299 60.000 0.00 0.00 46.47 2.93
740 751 1.003718 GGCTGTAGGTGAGCCGTTT 60.004 57.895 0.00 0.00 46.47 3.60
741 752 2.663196 GGCTGTAGGTGAGCCGTT 59.337 61.111 0.00 0.00 46.47 4.44
745 756 2.762535 TTGTTAGGCTGTAGGTGAGC 57.237 50.000 0.00 0.00 35.57 4.26
769 780 7.744087 ATGATATGTGTTACAGTTGTTGTGT 57.256 32.000 0.00 0.00 41.10 3.72
774 785 8.792830 AAGCTTATGATATGTGTTACAGTTGT 57.207 30.769 0.00 0.00 0.00 3.32
779 790 8.882736 CACAGAAAGCTTATGATATGTGTTACA 58.117 33.333 16.26 0.00 33.78 2.41
780 791 9.098355 TCACAGAAAGCTTATGATATGTGTTAC 57.902 33.333 18.26 0.00 38.31 2.50
908 919 5.577164 GCAGGTACATATAAATAGTGAGCCG 59.423 44.000 0.00 0.00 0.00 5.52
989 1000 4.274147 GAGGGAAGCCATCTATAGATCGA 58.726 47.826 12.50 0.00 30.94 3.59
990 1001 3.383185 GGAGGGAAGCCATCTATAGATCG 59.617 52.174 12.50 7.62 34.44 3.69
991 1002 4.405358 CAGGAGGGAAGCCATCTATAGATC 59.595 50.000 12.50 2.94 34.44 2.75
1155 1166 1.566018 GCCACCGTTCTTCTTCCACG 61.566 60.000 0.00 0.00 0.00 4.94
1411 1424 5.819901 AGAGTTTTATTGGCAGTGAGATAGC 59.180 40.000 0.00 0.00 0.00 2.97
1456 1511 9.883142 TGAAAGAAATTTCACCAATAACAAGTT 57.117 25.926 19.99 0.00 36.15 2.66
1543 1598 0.521735 GTCGACTGGGGTTGAATTGC 59.478 55.000 8.70 0.00 37.58 3.56
1572 1627 1.500474 CTGAAGGTGGCTATCCTCCA 58.500 55.000 6.49 0.00 46.13 3.86
1626 1681 3.326588 ACATACTAACAGGCCACACTTCA 59.673 43.478 5.01 0.00 0.00 3.02
1638 1693 7.717436 TCACATTTCACAGGAAACATACTAACA 59.283 33.333 0.00 0.00 45.22 2.41
1639 1694 8.015658 GTCACATTTCACAGGAAACATACTAAC 58.984 37.037 0.00 0.00 45.22 2.34
1650 1705 7.519809 CGTTTATTTCTGTCACATTTCACAGGA 60.520 37.037 0.00 0.00 40.49 3.86
1659 1714 6.985188 ATGCTACGTTTATTTCTGTCACAT 57.015 33.333 0.00 0.00 0.00 3.21
1714 1778 1.597854 CCTGTTGGCTCGCTGTTGA 60.598 57.895 0.00 0.00 0.00 3.18
1719 1783 4.335647 CCCACCTGTTGGCTCGCT 62.336 66.667 0.00 0.00 45.37 4.93
1783 1849 2.183046 GCTCAGACCGGAGTGCTC 59.817 66.667 9.46 0.00 37.24 4.26
1786 1852 2.010582 GCTAGGCTCAGACCGGAGTG 62.011 65.000 9.46 4.70 37.24 3.51
1804 1870 0.258774 TTTTAGATGGGCTGGGGAGC 59.741 55.000 0.00 0.00 0.00 4.70
1808 1874 0.756815 GGGCTTTTAGATGGGCTGGG 60.757 60.000 0.00 0.00 0.00 4.45
1845 1914 3.057315 GGCTAACTGCTGCATTCTTTTCA 60.057 43.478 1.31 0.00 42.39 2.69
1874 1943 0.798776 GCTTGTGCGTGTGAAGCTAT 59.201 50.000 0.00 0.00 39.24 2.97
1906 1975 2.505118 GTCTGGCTGCGTCGAGTC 60.505 66.667 0.00 0.00 0.00 3.36
1907 1976 3.274455 CTGTCTGGCTGCGTCGAGT 62.274 63.158 0.00 0.00 0.00 4.18
1909 1978 4.724602 GCTGTCTGGCTGCGTCGA 62.725 66.667 0.00 0.00 32.54 4.20
1939 2008 2.143876 AATATTTGGCGGCTTGTCCT 57.856 45.000 11.43 0.00 0.00 3.85
2067 2395 8.399425 TGTAAATCTGCGAACAAGTTTTCTTTA 58.601 29.630 0.00 0.00 38.17 1.85
2113 2441 4.941657 TGTGTAAAAATTGTGCATGCTCA 58.058 34.783 20.33 19.12 0.00 4.26
2125 2453 9.893305 GTATAACTGAACTGCTTGTGTAAAAAT 57.107 29.630 0.00 0.00 0.00 1.82
2154 2486 0.316841 GGCAAATTCAGGTTCGGCAA 59.683 50.000 0.00 0.00 0.00 4.52
2155 2487 1.531739 GGGCAAATTCAGGTTCGGCA 61.532 55.000 0.00 0.00 0.00 5.69
2205 2538 2.738846 ACGACATGTGCTCACAGAAATC 59.261 45.455 1.15 3.08 45.48 2.17
2209 2542 1.605457 GGAACGACATGTGCTCACAGA 60.605 52.381 1.15 0.00 45.48 3.41
2210 2543 0.792640 GGAACGACATGTGCTCACAG 59.207 55.000 1.15 3.95 45.48 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.