Multiple sequence alignment - TraesCS3A01G164000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G164000 chr3A 100.000 5851 0 0 1 5851 168837237 168831387 0.000000e+00 10805.0
1 TraesCS3A01G164000 chr3A 84.541 207 15 7 5098 5298 79396582 79396387 7.740000e-44 189.0
2 TraesCS3A01G164000 chr3D 91.389 1858 114 23 1031 2877 159431714 159433536 0.000000e+00 2503.0
3 TraesCS3A01G164000 chr3D 89.236 1858 151 27 4012 5850 159434760 159436587 0.000000e+00 2278.0
4 TraesCS3A01G164000 chr3D 86.290 868 81 26 3212 4056 159433910 159434762 0.000000e+00 909.0
5 TraesCS3A01G164000 chr3D 88.978 372 25 11 1 362 159428803 159429168 4.160000e-121 446.0
6 TraesCS3A01G164000 chr3D 85.000 440 40 7 603 1040 159431274 159431689 1.950000e-114 424.0
7 TraesCS3A01G164000 chr3D 83.755 277 23 10 5082 5347 67687872 67687607 5.860000e-60 243.0
8 TraesCS3A01G164000 chr3D 85.405 185 27 0 5660 5844 581872730 581872914 5.980000e-45 193.0
9 TraesCS3A01G164000 chr3D 94.340 106 5 1 2994 3098 159433533 159433638 1.690000e-35 161.0
10 TraesCS3A01G164000 chr3D 93.151 73 5 0 374 446 159429206 159429278 2.230000e-19 108.0
11 TraesCS3A01G164000 chr3B 89.392 1876 141 36 1023 2877 236148223 236150061 0.000000e+00 2309.0
12 TraesCS3A01G164000 chr3B 92.337 1592 88 16 3464 5045 236150802 236152369 0.000000e+00 2233.0
13 TraesCS3A01G164000 chr3B 88.757 507 46 8 2967 3465 236150041 236150544 1.390000e-170 610.0
14 TraesCS3A01G164000 chr3B 82.061 262 20 10 5092 5344 114151960 114152203 1.290000e-46 198.0
15 TraesCS3A01G164000 chr3B 84.416 77 10 1 489 563 450143477 450143553 2.260000e-09 75.0
16 TraesCS3A01G164000 chr6D 85.500 200 27 2 5646 5845 346269714 346269911 2.140000e-49 207.0
17 TraesCS3A01G164000 chr4D 84.848 198 29 1 5648 5845 465573141 465572945 1.290000e-46 198.0
18 TraesCS3A01G164000 chr1B 79.000 300 50 10 5351 5644 573853330 573853622 5.980000e-45 193.0
19 TraesCS3A01G164000 chr1B 84.146 82 7 4 489 564 452793980 452793899 2.260000e-09 75.0
20 TraesCS3A01G164000 chr4B 83.092 207 34 1 5646 5851 379087451 379087657 2.780000e-43 187.0
21 TraesCS3A01G164000 chr4B 97.917 96 2 0 2875 2970 143309791 143309696 3.630000e-37 167.0
22 TraesCS3A01G164000 chr4B 80.189 106 15 5 5405 5505 639153223 639153327 2.260000e-09 75.0
23 TraesCS3A01G164000 chr4B 84.416 77 9 2 489 563 48680252 48680177 8.130000e-09 73.1
24 TraesCS3A01G164000 chrUn 84.103 195 27 3 5660 5850 3055721 3055915 1.000000e-42 185.0
25 TraesCS3A01G164000 chrUn 84.416 77 8 4 488 564 76770060 76770132 8.130000e-09 73.1
26 TraesCS3A01G164000 chr5A 82.775 209 33 2 5646 5851 540287099 540287307 3.600000e-42 183.0
27 TraesCS3A01G164000 chr5A 74.051 316 61 16 5350 5649 568683498 568683808 6.200000e-20 110.0
28 TraesCS3A01G164000 chr5A 85.897 78 8 1 490 564 552280741 552280818 4.860000e-11 80.5
29 TraesCS3A01G164000 chr5A 85.897 78 8 1 489 563 552280818 552280741 4.860000e-11 80.5
30 TraesCS3A01G164000 chr6B 83.333 192 32 0 5660 5851 554687463 554687272 1.680000e-40 178.0
31 TraesCS3A01G164000 chr5B 81.991 211 32 3 5646 5851 426172679 426172888 2.170000e-39 174.0
32 TraesCS3A01G164000 chr5B 97.938 97 2 0 2874 2970 243411199 243411103 1.010000e-37 169.0
33 TraesCS3A01G164000 chr5B 87.342 79 4 2 488 563 334662393 334662318 1.040000e-12 86.1
34 TraesCS3A01G164000 chr4A 98.969 97 1 0 2874 2970 475420521 475420617 2.170000e-39 174.0
35 TraesCS3A01G164000 chr4A 80.000 140 21 5 5509 5643 675935708 675935571 4.830000e-16 97.1
36 TraesCS3A01G164000 chr4A 82.979 94 15 1 5398 5491 710393279 710393187 3.760000e-12 84.2
37 TraesCS3A01G164000 chr6A 84.706 170 26 0 5661 5830 77721314 77721483 2.800000e-38 171.0
38 TraesCS3A01G164000 chr2B 96.970 99 3 0 2872 2970 660461417 660461515 3.630000e-37 167.0
39 TraesCS3A01G164000 chr2B 96.970 99 3 0 2872 2970 776552238 776552140 3.630000e-37 167.0
40 TraesCS3A01G164000 chr2B 95.238 105 4 1 2867 2970 776550985 776550881 1.300000e-36 165.0
41 TraesCS3A01G164000 chr2B 95.960 99 4 0 2872 2970 776551608 776551510 1.690000e-35 161.0
42 TraesCS3A01G164000 chr2B 79.570 186 36 2 5372 5555 556223696 556223511 1.320000e-26 132.0
43 TraesCS3A01G164000 chr2B 76.577 222 41 7 5436 5651 727312773 727312989 1.720000e-20 111.0
44 TraesCS3A01G164000 chr7A 96.078 102 3 1 2870 2970 83784826 83784927 1.300000e-36 165.0
45 TraesCS3A01G164000 chr7B 95.192 104 4 1 2868 2970 697097761 697097658 4.690000e-36 163.0
46 TraesCS3A01G164000 chr7D 73.663 486 98 19 5350 5819 599925132 599925603 1.690000e-35 161.0
47 TraesCS3A01G164000 chr1A 77.483 151 32 2 5346 5495 403040528 403040677 8.080000e-14 89.8
48 TraesCS3A01G164000 chr2D 86.250 80 5 4 490 563 313225471 313225550 1.350000e-11 82.4
49 TraesCS3A01G164000 chr2D 85.333 75 7 3 490 563 124810958 124811029 2.260000e-09 75.0
50 TraesCS3A01G164000 chr2D 75.333 150 31 5 5378 5526 607682787 607682643 3.780000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G164000 chr3A 168831387 168837237 5850 True 10805.000000 10805 100.000000 1 5851 1 chr3A.!!$R2 5850
1 TraesCS3A01G164000 chr3D 159428803 159436587 7784 False 975.571429 2503 89.769143 1 5850 7 chr3D.!!$F2 5849
2 TraesCS3A01G164000 chr3B 236148223 236152369 4146 False 1717.333333 2309 90.162000 1023 5045 3 chr3B.!!$F3 4022

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.387929 AGTTTCTTGCTCGTCGGACA 59.612 50.0 9.10 0.00 0.00 4.02 F
592 629 0.465460 TTTGACCTGTGACACTGGCC 60.465 55.0 26.46 18.78 40.43 5.36 F
1010 3007 0.729116 ATCTCTGATTGCAAACGCGG 59.271 50.0 12.47 1.28 0.00 6.46 F
2088 4138 0.550914 CCTTGGGCAGGCCTTATGTA 59.449 55.0 15.38 0.00 35.13 2.29 F
2972 5032 0.605319 TGCAGCCTTTCCCTACAACG 60.605 55.0 0.00 0.00 0.00 4.10 F
3680 6195 0.258774 TTTTAGATGGGCTGGGGAGC 59.741 55.0 0.00 0.00 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1201 3236 0.179018 GGGAATGCGTCATAGGCCTT 60.179 55.0 12.58 0.0 0.0 4.35 R
1627 3671 0.530870 GACCAGACGGAGCTAATGCC 60.531 60.0 0.00 0.0 36.2 4.40 R
2953 5013 0.605319 CGTTGTAGGGAAAGGCTGCA 60.605 55.0 0.50 0.0 0.0 4.41 R
3098 5170 0.260230 TGGTTTTGGGTTCTCTGGCA 59.740 50.0 0.00 0.0 0.0 4.92 R
4747 7320 0.037590 TATCAGCACCAACCACACCC 59.962 55.0 0.00 0.0 0.0 4.61 R
5362 7943 0.034896 GCGGGAGGTTTTGAGAGTCA 59.965 55.0 0.00 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.431234 TCCTCAAGATTTTCCTAGTTTCTTGC 59.569 38.462 6.18 0.00 41.80 4.01
42 43 2.631418 TCCTAGTTTCTTGCTCGTCG 57.369 50.000 0.00 0.00 0.00 5.12
43 44 1.201647 TCCTAGTTTCTTGCTCGTCGG 59.798 52.381 0.00 0.00 0.00 4.79
44 45 1.201647 CCTAGTTTCTTGCTCGTCGGA 59.798 52.381 0.00 0.00 0.00 4.55
45 46 2.251893 CTAGTTTCTTGCTCGTCGGAC 58.748 52.381 0.00 0.00 0.00 4.79
46 47 0.387929 AGTTTCTTGCTCGTCGGACA 59.612 50.000 9.10 0.00 0.00 4.02
47 48 0.507358 GTTTCTTGCTCGTCGGACAC 59.493 55.000 9.10 0.00 0.00 3.67
59 60 4.265056 GGACACCGCCACCTGGTT 62.265 66.667 0.00 0.00 37.72 3.67
80 83 6.040391 TGGTTTTAGATTCCTGTTGTTGAAGG 59.960 38.462 0.00 0.00 34.65 3.46
118 121 4.668576 CAGTGGTGCTATGTACTTGTTG 57.331 45.455 0.00 0.00 0.00 3.33
119 122 4.065088 CAGTGGTGCTATGTACTTGTTGT 58.935 43.478 0.00 0.00 0.00 3.32
164 171 2.557924 ACGTGCCATGATTTGTGTTCAT 59.442 40.909 0.00 0.00 34.15 2.57
182 189 5.359576 TGTTCATCTTGTTTTGGTTGTAGCT 59.640 36.000 0.00 0.00 0.00 3.32
183 190 5.689383 TCATCTTGTTTTGGTTGTAGCTC 57.311 39.130 0.00 0.00 0.00 4.09
198 205 7.446931 TGGTTGTAGCTCATTTTGAATAGTTGA 59.553 33.333 0.00 0.00 0.00 3.18
249 256 4.314961 TGTATGCAACTCAGTCGTTCAAT 58.685 39.130 0.00 0.00 0.00 2.57
256 263 5.554636 CAACTCAGTCGTTCAATCTTATGC 58.445 41.667 0.00 0.00 0.00 3.14
267 274 3.763360 TCAATCTTATGCTGTGGGGTTTG 59.237 43.478 0.00 0.00 0.00 2.93
274 281 2.442413 TGCTGTGGGGTTTGCTTATAC 58.558 47.619 0.00 0.00 0.00 1.47
275 282 2.224892 TGCTGTGGGGTTTGCTTATACA 60.225 45.455 0.00 0.00 0.00 2.29
281 288 4.395231 GTGGGGTTTGCTTATACAGTCTTC 59.605 45.833 0.00 0.00 0.00 2.87
284 291 5.816258 GGGGTTTGCTTATACAGTCTTCTAC 59.184 44.000 0.00 0.00 0.00 2.59
295 302 2.232941 CAGTCTTCTACGGTTGGGCTTA 59.767 50.000 0.00 0.00 0.00 3.09
296 303 2.901839 AGTCTTCTACGGTTGGGCTTAA 59.098 45.455 0.00 0.00 0.00 1.85
297 304 2.998670 GTCTTCTACGGTTGGGCTTAAC 59.001 50.000 0.00 0.00 0.00 2.01
367 378 3.524541 CTGGAAGCATACCCAATTTTGC 58.475 45.455 0.00 0.00 35.34 3.68
368 379 3.172339 TGGAAGCATACCCAATTTTGCT 58.828 40.909 0.00 0.00 46.85 3.91
369 380 3.055963 TGGAAGCATACCCAATTTTGCTG 60.056 43.478 0.00 0.00 44.26 4.41
370 381 3.055891 GGAAGCATACCCAATTTTGCTGT 60.056 43.478 0.00 0.00 44.26 4.40
371 382 3.598019 AGCATACCCAATTTTGCTGTG 57.402 42.857 0.00 0.00 43.44 3.66
372 383 3.164268 AGCATACCCAATTTTGCTGTGA 58.836 40.909 0.00 0.00 43.44 3.58
378 415 4.881920 ACCCAATTTTGCTGTGAATGTAC 58.118 39.130 0.00 0.00 0.00 2.90
384 421 3.788227 TTGCTGTGAATGTACTCCCTT 57.212 42.857 0.00 0.00 0.00 3.95
385 422 3.057969 TGCTGTGAATGTACTCCCTTG 57.942 47.619 0.00 0.00 0.00 3.61
388 425 3.055385 GCTGTGAATGTACTCCCTTGGTA 60.055 47.826 0.00 0.00 0.00 3.25
453 490 9.640952 TTCCTCTGTAATTTAATATCCCCTTTG 57.359 33.333 0.00 0.00 0.00 2.77
454 491 8.787818 TCCTCTGTAATTTAATATCCCCTTTGT 58.212 33.333 0.00 0.00 0.00 2.83
455 492 9.067986 CCTCTGTAATTTAATATCCCCTTTGTC 57.932 37.037 0.00 0.00 0.00 3.18
456 493 8.990163 TCTGTAATTTAATATCCCCTTTGTCC 57.010 34.615 0.00 0.00 0.00 4.02
457 494 8.787818 TCTGTAATTTAATATCCCCTTTGTCCT 58.212 33.333 0.00 0.00 0.00 3.85
470 507 9.642343 ATCCCCTTTGTCCTAAAATATAAGAAC 57.358 33.333 0.00 0.00 0.00 3.01
471 508 8.616598 TCCCCTTTGTCCTAAAATATAAGAACA 58.383 33.333 0.00 0.00 0.00 3.18
472 509 9.250246 CCCCTTTGTCCTAAAATATAAGAACAA 57.750 33.333 0.00 0.00 0.00 2.83
505 542 8.815565 AATGTCTTATACTCTCTCTGTCTCAA 57.184 34.615 0.00 0.00 0.00 3.02
506 543 8.815565 ATGTCTTATACTCTCTCTGTCTCAAA 57.184 34.615 0.00 0.00 0.00 2.69
507 544 8.637196 TGTCTTATACTCTCTCTGTCTCAAAA 57.363 34.615 0.00 0.00 0.00 2.44
508 545 9.249053 TGTCTTATACTCTCTCTGTCTCAAAAT 57.751 33.333 0.00 0.00 0.00 1.82
554 591 8.996024 AAAAATGTTCTTATATTTTGGGACGG 57.004 30.769 0.00 0.00 35.87 4.79
555 592 7.948034 AAATGTTCTTATATTTTGGGACGGA 57.052 32.000 0.00 0.00 0.00 4.69
556 593 7.568199 AATGTTCTTATATTTTGGGACGGAG 57.432 36.000 0.00 0.00 0.00 4.63
557 594 5.433526 TGTTCTTATATTTTGGGACGGAGG 58.566 41.667 0.00 0.00 0.00 4.30
558 595 4.699925 TCTTATATTTTGGGACGGAGGG 57.300 45.455 0.00 0.00 0.00 4.30
559 596 4.300345 TCTTATATTTTGGGACGGAGGGA 58.700 43.478 0.00 0.00 0.00 4.20
560 597 4.347000 TCTTATATTTTGGGACGGAGGGAG 59.653 45.833 0.00 0.00 0.00 4.30
561 598 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
562 599 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
563 600 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
564 601 2.852714 TTTGGGACGGAGGGAGTATA 57.147 50.000 0.00 0.00 0.00 1.47
565 602 2.852714 TTGGGACGGAGGGAGTATAA 57.147 50.000 0.00 0.00 0.00 0.98
566 603 2.376695 TGGGACGGAGGGAGTATAAG 57.623 55.000 0.00 0.00 0.00 1.73
570 607 3.294214 GGACGGAGGGAGTATAAGACAA 58.706 50.000 0.00 0.00 0.00 3.18
589 626 4.997565 ACAATTTTTGACCTGTGACACTG 58.002 39.130 7.20 6.31 0.00 3.66
590 627 4.142182 ACAATTTTTGACCTGTGACACTGG 60.142 41.667 25.30 25.30 42.22 4.00
591 628 1.388547 TTTTGACCTGTGACACTGGC 58.611 50.000 26.46 19.92 40.43 4.85
592 629 0.465460 TTTGACCTGTGACACTGGCC 60.465 55.000 26.46 18.78 40.43 5.36
593 630 2.357517 GACCTGTGACACTGGCCG 60.358 66.667 26.46 8.21 40.43 6.13
594 631 3.161450 ACCTGTGACACTGGCCGT 61.161 61.111 26.46 8.97 40.43 5.68
619 2614 6.809196 TGTGAAAAACGTCTTACAATTTTGCT 59.191 30.769 0.00 0.00 0.00 3.91
634 2629 6.310224 ACAATTTTGCTTGGTATTATGTTCGC 59.690 34.615 0.00 0.00 0.00 4.70
637 2632 3.339141 TGCTTGGTATTATGTTCGCACA 58.661 40.909 0.00 0.00 37.31 4.57
644 2639 5.412904 TGGTATTATGTTCGCACAATGTCAA 59.587 36.000 0.00 0.00 36.16 3.18
648 2643 6.503616 TTATGTTCGCACAATGTCAAAAAC 57.496 33.333 0.00 0.00 36.16 2.43
649 2644 3.838120 TGTTCGCACAATGTCAAAAACA 58.162 36.364 0.00 0.00 43.51 2.83
652 2647 4.103365 TCGCACAATGTCAAAAACAGTT 57.897 36.364 0.00 0.00 42.37 3.16
690 2685 6.843752 TGGATGGAGTTCCTAACACTAAAAA 58.156 36.000 0.00 0.00 36.68 1.94
692 2687 6.940867 GGATGGAGTTCCTAACACTAAAAAGT 59.059 38.462 0.00 0.00 36.82 2.66
724 2719 8.260114 TGTCTCTAGATACATCAGAATTTTGCA 58.740 33.333 6.85 0.00 0.00 4.08
733 2728 9.768662 ATACATCAGAATTTTGCAGAAAAGTTT 57.231 25.926 0.00 0.00 34.53 2.66
734 2729 8.496707 ACATCAGAATTTTGCAGAAAAGTTTT 57.503 26.923 0.00 0.00 34.53 2.43
735 2730 8.392612 ACATCAGAATTTTGCAGAAAAGTTTTG 58.607 29.630 5.36 0.00 34.53 2.44
736 2731 8.605746 CATCAGAATTTTGCAGAAAAGTTTTGA 58.394 29.630 5.36 5.17 40.49 2.69
737 2732 8.545229 TCAGAATTTTGCAGAAAAGTTTTGAA 57.455 26.923 5.36 0.00 36.37 2.69
739 2734 8.229137 CAGAATTTTGCAGAAAAGTTTTGAACA 58.771 29.630 5.36 0.00 33.78 3.18
740 2735 8.229811 AGAATTTTGCAGAAAAGTTTTGAACAC 58.770 29.630 5.36 0.00 34.53 3.32
743 2738 5.132897 TGCAGAAAAGTTTTGAACACAGT 57.867 34.783 5.36 0.00 0.00 3.55
744 2739 6.260870 TGCAGAAAAGTTTTGAACACAGTA 57.739 33.333 5.36 0.00 0.00 2.74
745 2740 6.090129 TGCAGAAAAGTTTTGAACACAGTAC 58.910 36.000 5.36 0.00 0.00 2.73
746 2741 6.090129 GCAGAAAAGTTTTGAACACAGTACA 58.910 36.000 5.36 0.00 0.00 2.90
747 2742 6.584563 GCAGAAAAGTTTTGAACACAGTACAA 59.415 34.615 5.36 0.00 0.00 2.41
748 2743 7.115663 GCAGAAAAGTTTTGAACACAGTACAAA 59.884 33.333 5.36 0.00 0.00 2.83
749 2744 8.424731 CAGAAAAGTTTTGAACACAGTACAAAC 58.575 33.333 5.36 0.00 34.09 2.93
750 2745 6.921332 AAAGTTTTGAACACAGTACAAACG 57.079 33.333 0.00 0.00 34.09 3.60
751 2746 4.408694 AGTTTTGAACACAGTACAAACGC 58.591 39.130 0.00 0.00 34.09 4.84
752 2747 4.083217 AGTTTTGAACACAGTACAAACGCA 60.083 37.500 0.00 0.00 34.09 5.24
755 2750 2.223157 TGAACACAGTACAAACGCAAGC 60.223 45.455 0.00 0.00 45.62 4.01
782 2777 6.822073 AAAAATCAGCCTCGTTTGTTAAAC 57.178 33.333 0.00 0.00 38.02 2.01
783 2778 5.508200 AAATCAGCCTCGTTTGTTAAACA 57.492 34.783 5.42 0.00 41.44 2.83
784 2779 5.508200 AATCAGCCTCGTTTGTTAAACAA 57.492 34.783 0.00 0.00 41.44 2.83
785 2780 5.705609 ATCAGCCTCGTTTGTTAAACAAT 57.294 34.783 0.54 0.00 41.44 2.71
786 2781 6.811253 ATCAGCCTCGTTTGTTAAACAATA 57.189 33.333 0.54 0.00 41.44 1.90
787 2782 6.621316 TCAGCCTCGTTTGTTAAACAATAA 57.379 33.333 0.54 0.00 41.44 1.40
788 2783 7.028926 TCAGCCTCGTTTGTTAAACAATAAA 57.971 32.000 0.54 0.00 41.44 1.40
816 2811 9.498176 ACAATAAAATGGATACTCCCGTTATAC 57.502 33.333 0.00 0.00 35.03 1.47
827 2822 6.131544 ACTCCCGTTATACAAATGAAATGC 57.868 37.500 0.00 0.00 0.00 3.56
828 2823 5.885912 ACTCCCGTTATACAAATGAAATGCT 59.114 36.000 0.00 0.00 0.00 3.79
854 2849 6.907206 TTTCAGAAATTTGCAGGAAAGTTG 57.093 33.333 4.70 0.00 32.09 3.16
900 2895 4.702612 TGATTATAGGAAGAGGCTCTAGCG 59.297 45.833 19.07 0.00 43.26 4.26
928 2923 6.940298 AGAGTTTTGGATGGACGAATTTTAGA 59.060 34.615 0.00 0.00 0.00 2.10
985 2982 6.480320 TGCTTAGAAACTGTCAGAAAACTCTC 59.520 38.462 6.91 0.00 0.00 3.20
993 2990 3.428870 TGTCAGAAAACTCTCGCGAAATC 59.571 43.478 11.33 2.38 0.00 2.17
994 2991 3.675698 GTCAGAAAACTCTCGCGAAATCT 59.324 43.478 11.33 4.78 0.00 2.40
999 2996 3.791973 AACTCTCGCGAAATCTCTGAT 57.208 42.857 11.33 0.00 0.00 2.90
1003 3000 1.929169 CTCGCGAAATCTCTGATTGCA 59.071 47.619 11.33 0.00 0.00 4.08
1010 3007 0.729116 ATCTCTGATTGCAAACGCGG 59.271 50.000 12.47 1.28 0.00 6.46
1187 3218 2.599757 GCCAAGGTTACGTCCCCCT 61.600 63.158 0.00 0.00 0.00 4.79
1201 3236 3.368501 CCCTCCCCTCCCTCCTCA 61.369 72.222 0.00 0.00 0.00 3.86
1208 3243 1.314867 CCTCCCTCCTCAAGGCCTA 59.685 63.158 5.16 0.00 44.71 3.93
1386 3421 1.543871 GGCACGTTCCTTTCCTTACCA 60.544 52.381 0.00 0.00 0.00 3.25
1387 3422 1.804748 GCACGTTCCTTTCCTTACCAG 59.195 52.381 0.00 0.00 0.00 4.00
1405 3440 5.836024 ACCAGTTCTTAATTCCTACCACA 57.164 39.130 0.00 0.00 0.00 4.17
1406 3441 6.388619 ACCAGTTCTTAATTCCTACCACAT 57.611 37.500 0.00 0.00 0.00 3.21
1407 3442 6.790319 ACCAGTTCTTAATTCCTACCACATT 58.210 36.000 0.00 0.00 0.00 2.71
1409 3444 6.037172 CCAGTTCTTAATTCCTACCACATTCG 59.963 42.308 0.00 0.00 0.00 3.34
1411 3446 7.119262 CAGTTCTTAATTCCTACCACATTCGTT 59.881 37.037 0.00 0.00 0.00 3.85
1413 3448 8.938906 GTTCTTAATTCCTACCACATTCGTTTA 58.061 33.333 0.00 0.00 0.00 2.01
1414 3449 8.483307 TCTTAATTCCTACCACATTCGTTTAC 57.517 34.615 0.00 0.00 0.00 2.01
1415 3450 8.095792 TCTTAATTCCTACCACATTCGTTTACA 58.904 33.333 0.00 0.00 0.00 2.41
1416 3451 6.737254 AATTCCTACCACATTCGTTTACAG 57.263 37.500 0.00 0.00 0.00 2.74
1417 3452 5.471556 TTCCTACCACATTCGTTTACAGA 57.528 39.130 0.00 0.00 0.00 3.41
1418 3453 5.068234 TCCTACCACATTCGTTTACAGAG 57.932 43.478 0.00 0.00 0.00 3.35
1419 3454 4.081862 TCCTACCACATTCGTTTACAGAGG 60.082 45.833 0.00 0.00 0.00 3.69
1500 3537 1.841944 GTCAATTGTTCATGCGCGATG 59.158 47.619 12.10 11.34 0.00 3.84
1791 3835 4.985044 TGCTAAACTTGACTTAAGCGAC 57.015 40.909 1.29 0.00 40.16 5.19
1821 3865 3.600388 GGTTCTCTGGTGGATAGTTGTG 58.400 50.000 0.00 0.00 0.00 3.33
1880 3924 3.963428 AGCAGTATTCCGTTCTTCACT 57.037 42.857 0.00 0.00 0.00 3.41
1965 4010 9.339850 TCTTGTGGACTAGTACTAGTATTCATC 57.660 37.037 30.80 18.76 45.63 2.92
1979 4024 8.216423 ACTAGTATTCATCTTCCCGTAGAGTTA 58.784 37.037 0.00 0.00 0.00 2.24
1987 4032 3.795623 TCCCGTAGAGTTAACATGAGC 57.204 47.619 8.61 0.00 0.00 4.26
2034 4083 4.339429 CAATTCGTGGCTACGTATTTTGG 58.661 43.478 21.50 9.75 44.39 3.28
2076 4126 6.524101 TTGTACTGAATTTATTCCTTGGGC 57.476 37.500 0.00 0.00 35.97 5.36
2088 4138 0.550914 CCTTGGGCAGGCCTTATGTA 59.449 55.000 15.38 0.00 35.13 2.29
2345 4398 4.701651 CCATGCCTCAGTTGTCATTTTCTA 59.298 41.667 0.00 0.00 0.00 2.10
2356 4409 7.010552 CAGTTGTCATTTTCTAGATAGAACCCG 59.989 40.741 1.77 0.00 41.64 5.28
2361 4414 2.447408 TCTAGATAGAACCCGTGGCA 57.553 50.000 0.00 0.00 0.00 4.92
2368 4421 5.445964 AGATAGAACCCGTGGCATAAAATT 58.554 37.500 0.00 0.00 0.00 1.82
2376 4429 5.186021 ACCCGTGGCATAAAATTGTTGAATA 59.814 36.000 0.00 0.00 0.00 1.75
2380 4433 8.751335 CCGTGGCATAAAATTGTTGAATATAAC 58.249 33.333 0.00 0.00 0.00 1.89
2394 4447 8.473219 TGTTGAATATAACCATTTGCATGCTAA 58.527 29.630 20.33 18.43 0.00 3.09
2417 4470 1.243902 GTCCATTTGCCTCGTTTCCA 58.756 50.000 0.00 0.00 0.00 3.53
2418 4471 1.611491 GTCCATTTGCCTCGTTTCCAA 59.389 47.619 0.00 0.00 0.00 3.53
2421 4474 3.056891 TCCATTTGCCTCGTTTCCAAATC 60.057 43.478 0.00 0.00 37.14 2.17
2499 4553 1.678101 GTTGCTGCCTGATAATGGACC 59.322 52.381 0.00 0.00 0.00 4.46
2572 4632 6.041409 TCAGCTTCTTCTAGTCATATCCTTGG 59.959 42.308 0.00 0.00 0.00 3.61
2634 4694 3.863041 CAACTCTTACCAGGGTAGCTTC 58.137 50.000 0.00 0.00 29.38 3.86
2638 4698 4.896482 ACTCTTACCAGGGTAGCTTCATAG 59.104 45.833 0.00 0.00 28.61 2.23
2664 4724 6.539173 TGTTTCATCATACTTAACCAGTGGT 58.461 36.000 9.70 9.70 35.97 4.16
2699 4759 3.403322 AGATGGAGGGTGGGCTTAAATA 58.597 45.455 0.00 0.00 0.00 1.40
2700 4760 3.990245 AGATGGAGGGTGGGCTTAAATAT 59.010 43.478 0.00 0.00 0.00 1.28
2710 4770 8.068733 AGGGTGGGCTTAAATATTTTTATGGTA 58.931 33.333 5.91 0.00 0.00 3.25
2711 4771 8.364894 GGGTGGGCTTAAATATTTTTATGGTAG 58.635 37.037 5.91 0.00 0.00 3.18
2809 4869 8.778358 ACTAGAGAAGCAACAATAAAAAGTCAG 58.222 33.333 0.00 0.00 0.00 3.51
2811 4871 7.869800 AGAGAAGCAACAATAAAAAGTCAGAG 58.130 34.615 0.00 0.00 0.00 3.35
2812 4872 7.716998 AGAGAAGCAACAATAAAAAGTCAGAGA 59.283 33.333 0.00 0.00 0.00 3.10
2813 4873 7.869800 AGAAGCAACAATAAAAAGTCAGAGAG 58.130 34.615 0.00 0.00 0.00 3.20
2814 4874 7.500559 AGAAGCAACAATAAAAAGTCAGAGAGT 59.499 33.333 0.00 0.00 0.00 3.24
2817 4877 9.289782 AGCAACAATAAAAAGTCAGAGAGTATT 57.710 29.630 0.00 0.00 0.00 1.89
2818 4878 9.334693 GCAACAATAAAAAGTCAGAGAGTATTG 57.665 33.333 0.00 0.00 34.91 1.90
2827 4887 8.954950 AAAGTCAGAGAGTATTGATGTATTGG 57.045 34.615 0.00 0.00 0.00 3.16
2828 4888 7.667575 AGTCAGAGAGTATTGATGTATTGGT 57.332 36.000 0.00 0.00 0.00 3.67
2829 4889 7.495901 AGTCAGAGAGTATTGATGTATTGGTG 58.504 38.462 0.00 0.00 0.00 4.17
2830 4890 7.124901 AGTCAGAGAGTATTGATGTATTGGTGT 59.875 37.037 0.00 0.00 0.00 4.16
2831 4891 7.223582 GTCAGAGAGTATTGATGTATTGGTGTG 59.776 40.741 0.00 0.00 0.00 3.82
2832 4892 7.124147 TCAGAGAGTATTGATGTATTGGTGTGA 59.876 37.037 0.00 0.00 0.00 3.58
2833 4893 7.765819 CAGAGAGTATTGATGTATTGGTGTGAA 59.234 37.037 0.00 0.00 0.00 3.18
2834 4894 8.321353 AGAGAGTATTGATGTATTGGTGTGAAA 58.679 33.333 0.00 0.00 0.00 2.69
2844 4904 7.225784 TGTATTGGTGTGAAATGTTGCTTAT 57.774 32.000 0.00 0.00 0.00 1.73
2848 4908 5.694816 TGGTGTGAAATGTTGCTTATTACG 58.305 37.500 0.00 0.00 0.00 3.18
2875 4935 3.806380 TGTACAACGCCTTCTAACCAAA 58.194 40.909 0.00 0.00 0.00 3.28
2876 4936 4.197750 TGTACAACGCCTTCTAACCAAAA 58.802 39.130 0.00 0.00 0.00 2.44
2877 4937 4.639310 TGTACAACGCCTTCTAACCAAAAA 59.361 37.500 0.00 0.00 0.00 1.94
2903 4963 3.760035 CCCGGTGCACGTAGCTCT 61.760 66.667 11.45 0.00 45.94 4.09
2904 4964 2.202623 CCGGTGCACGTAGCTCTC 60.203 66.667 11.45 0.00 45.94 3.20
2905 4965 2.577112 CGGTGCACGTAGCTCTCG 60.577 66.667 11.45 9.21 45.94 4.04
2906 4966 2.881352 GGTGCACGTAGCTCTCGC 60.881 66.667 11.45 1.35 45.94 5.03
2908 4968 1.444553 GTGCACGTAGCTCTCGCTT 60.445 57.895 0.00 0.00 46.47 4.68
2909 4969 1.444383 TGCACGTAGCTCTCGCTTG 60.444 57.895 10.44 4.81 46.47 4.01
2910 4970 2.793322 GCACGTAGCTCTCGCTTGC 61.793 63.158 10.44 9.99 46.47 4.01
2911 4971 2.202492 ACGTAGCTCTCGCTTGCG 60.202 61.111 8.87 8.87 46.47 4.85
2912 4972 3.611792 CGTAGCTCTCGCTTGCGC 61.612 66.667 10.38 0.00 46.47 6.09
2913 4973 2.507102 GTAGCTCTCGCTTGCGCA 60.507 61.111 5.66 5.66 46.47 6.09
2914 4974 2.202663 TAGCTCTCGCTTGCGCAG 60.203 61.111 11.31 6.32 46.47 5.18
2915 4975 3.706563 TAGCTCTCGCTTGCGCAGG 62.707 63.158 16.21 16.21 46.47 4.85
2917 4977 4.749310 CTCTCGCTTGCGCAGGGT 62.749 66.667 21.88 0.00 36.78 4.34
2918 4978 4.742201 TCTCGCTTGCGCAGGGTC 62.742 66.667 21.88 4.29 36.78 4.46
2930 4990 4.735599 AGGGTCCGGGGAAGGGTC 62.736 72.222 0.00 0.00 0.00 4.46
2937 4997 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
2938 4998 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2939 4999 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2940 5000 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
2941 5001 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
2942 5002 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
2943 5003 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
2944 5004 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
2955 5015 5.291905 ACCACTTTGGGTCTATAGTATGC 57.708 43.478 0.00 0.00 43.37 3.14
2956 5016 4.719773 ACCACTTTGGGTCTATAGTATGCA 59.280 41.667 0.00 0.00 43.37 3.96
2957 5017 5.163301 ACCACTTTGGGTCTATAGTATGCAG 60.163 44.000 0.00 0.00 43.37 4.41
2958 5018 4.752101 CACTTTGGGTCTATAGTATGCAGC 59.248 45.833 0.00 0.00 0.00 5.25
2959 5019 4.202367 ACTTTGGGTCTATAGTATGCAGCC 60.202 45.833 0.00 0.00 0.00 4.85
2960 5020 3.260269 TGGGTCTATAGTATGCAGCCT 57.740 47.619 0.00 0.00 0.00 4.58
2961 5021 3.587498 TGGGTCTATAGTATGCAGCCTT 58.413 45.455 0.00 0.00 0.00 4.35
2962 5022 3.973973 TGGGTCTATAGTATGCAGCCTTT 59.026 43.478 0.00 0.00 0.00 3.11
2963 5023 4.040461 TGGGTCTATAGTATGCAGCCTTTC 59.960 45.833 0.00 0.00 0.00 2.62
2964 5024 4.563786 GGGTCTATAGTATGCAGCCTTTCC 60.564 50.000 0.00 0.00 0.00 3.13
2965 5025 4.563786 GGTCTATAGTATGCAGCCTTTCCC 60.564 50.000 0.00 0.00 0.00 3.97
2966 5026 4.284746 GTCTATAGTATGCAGCCTTTCCCT 59.715 45.833 0.00 0.00 0.00 4.20
2967 5027 5.480772 GTCTATAGTATGCAGCCTTTCCCTA 59.519 44.000 0.00 0.00 0.00 3.53
2968 5028 4.625607 ATAGTATGCAGCCTTTCCCTAC 57.374 45.455 0.00 0.00 0.00 3.18
2969 5029 2.196595 AGTATGCAGCCTTTCCCTACA 58.803 47.619 0.00 0.00 0.00 2.74
2970 5030 2.576191 AGTATGCAGCCTTTCCCTACAA 59.424 45.455 0.00 0.00 0.00 2.41
2971 5031 1.839424 ATGCAGCCTTTCCCTACAAC 58.161 50.000 0.00 0.00 0.00 3.32
2972 5032 0.605319 TGCAGCCTTTCCCTACAACG 60.605 55.000 0.00 0.00 0.00 4.10
2973 5033 1.923227 GCAGCCTTTCCCTACAACGC 61.923 60.000 0.00 0.00 0.00 4.84
2974 5034 1.002502 AGCCTTTCCCTACAACGCC 60.003 57.895 0.00 0.00 0.00 5.68
2975 5035 1.002502 GCCTTTCCCTACAACGCCT 60.003 57.895 0.00 0.00 0.00 5.52
2976 5036 0.608308 GCCTTTCCCTACAACGCCTT 60.608 55.000 0.00 0.00 0.00 4.35
2977 5037 1.450025 CCTTTCCCTACAACGCCTTC 58.550 55.000 0.00 0.00 0.00 3.46
2978 5038 1.003233 CCTTTCCCTACAACGCCTTCT 59.997 52.381 0.00 0.00 0.00 2.85
2979 5039 2.552373 CCTTTCCCTACAACGCCTTCTT 60.552 50.000 0.00 0.00 0.00 2.52
2980 5040 3.307199 CCTTTCCCTACAACGCCTTCTTA 60.307 47.826 0.00 0.00 0.00 2.10
2981 5041 4.320870 CTTTCCCTACAACGCCTTCTTAA 58.679 43.478 0.00 0.00 0.00 1.85
2982 5042 3.323751 TCCCTACAACGCCTTCTTAAC 57.676 47.619 0.00 0.00 0.00 2.01
2983 5043 2.027837 TCCCTACAACGCCTTCTTAACC 60.028 50.000 0.00 0.00 0.00 2.85
2984 5044 2.289819 CCCTACAACGCCTTCTTAACCA 60.290 50.000 0.00 0.00 0.00 3.67
2985 5045 3.404899 CCTACAACGCCTTCTTAACCAA 58.595 45.455 0.00 0.00 0.00 3.67
2986 5046 3.816523 CCTACAACGCCTTCTTAACCAAA 59.183 43.478 0.00 0.00 0.00 3.28
2987 5047 4.276431 CCTACAACGCCTTCTTAACCAAAA 59.724 41.667 0.00 0.00 0.00 2.44
2988 5048 4.929819 ACAACGCCTTCTTAACCAAAAT 57.070 36.364 0.00 0.00 0.00 1.82
2989 5049 6.149807 CCTACAACGCCTTCTTAACCAAAATA 59.850 38.462 0.00 0.00 0.00 1.40
2990 5050 6.584185 ACAACGCCTTCTTAACCAAAATAT 57.416 33.333 0.00 0.00 0.00 1.28
2991 5051 7.690952 ACAACGCCTTCTTAACCAAAATATA 57.309 32.000 0.00 0.00 0.00 0.86
2992 5052 7.758495 ACAACGCCTTCTTAACCAAAATATAG 58.242 34.615 0.00 0.00 0.00 1.31
2993 5053 7.608761 ACAACGCCTTCTTAACCAAAATATAGA 59.391 33.333 0.00 0.00 0.00 1.98
2994 5054 8.455682 CAACGCCTTCTTAACCAAAATATAGAA 58.544 33.333 0.00 0.00 0.00 2.10
3059 5131 9.638239 TCTGTCCAAATTAGCACAATTTTTATC 57.362 29.630 6.36 1.18 0.00 1.75
3098 5170 3.753434 CGACCACCTCGCTGAGCT 61.753 66.667 1.78 0.00 35.06 4.09
3100 5172 4.385405 ACCACCTCGCTGAGCTGC 62.385 66.667 1.78 0.00 0.00 5.25
3110 5182 1.078567 CTGAGCTGCCAGAGAACCC 60.079 63.158 11.25 0.00 36.29 4.11
3140 5213 7.093992 CCAAGAGAAAACAAGACCTACTAGAG 58.906 42.308 0.00 0.00 0.00 2.43
3182 5255 1.448540 CACTCATCTGGCCACCGAC 60.449 63.158 0.00 0.00 0.00 4.79
3184 5257 3.723235 CTCATCTGGCCACCGACGG 62.723 68.421 13.61 13.61 0.00 4.79
3207 5280 1.661341 CGCCAAATGGAAGAGAGGAG 58.339 55.000 2.98 0.00 37.39 3.69
3208 5281 1.387539 GCCAAATGGAAGAGAGGAGC 58.612 55.000 2.98 0.00 37.39 4.70
3210 5283 1.012841 CAAATGGAAGAGAGGAGCGC 58.987 55.000 0.00 0.00 0.00 5.92
3215 5466 1.096386 GGAAGAGAGGAGCGCGACTA 61.096 60.000 12.10 0.00 0.00 2.59
3219 5470 1.378124 GAGAGGAGCGCGACTAAGGT 61.378 60.000 12.10 0.00 0.00 3.50
3257 5508 1.568504 CTAGGCACTGGTAGTTGGGA 58.431 55.000 0.00 0.00 41.52 4.37
3274 5525 0.792640 GGAACGACATGTGCTCACAG 59.207 55.000 1.15 3.95 45.48 3.66
3275 5526 1.605457 GGAACGACATGTGCTCACAGA 60.605 52.381 1.15 0.00 45.48 3.41
3279 5530 2.738846 ACGACATGTGCTCACAGAAATC 59.261 45.455 1.15 3.08 45.48 2.17
3329 5581 1.531739 GGGCAAATTCAGGTTCGGCA 61.532 55.000 0.00 0.00 0.00 5.69
3330 5582 0.316841 GGCAAATTCAGGTTCGGCAA 59.683 50.000 0.00 0.00 0.00 4.52
3371 5627 4.941657 TGTGTAAAAATTGTGCATGCTCA 58.058 34.783 20.33 19.12 0.00 4.26
3417 5673 8.399425 TGTAAATCTGCGAACAAGTTTTCTTTA 58.601 29.630 0.00 0.00 38.17 1.85
3545 6060 2.143876 AATATTTGGCGGCTTGTCCT 57.856 45.000 11.43 0.00 0.00 3.85
3575 6090 4.724602 GCTGTCTGGCTGCGTCGA 62.725 66.667 0.00 0.00 32.54 4.20
3577 6092 3.274455 CTGTCTGGCTGCGTCGAGT 62.274 63.158 0.00 0.00 0.00 4.18
3578 6093 2.505118 GTCTGGCTGCGTCGAGTC 60.505 66.667 0.00 0.00 0.00 3.36
3579 6094 4.103103 TCTGGCTGCGTCGAGTCG 62.103 66.667 6.09 6.09 0.00 4.18
3610 6125 0.798776 GCTTGTGCGTGTGAAGCTAT 59.201 50.000 0.00 0.00 39.24 2.97
3639 6154 3.057315 GGCTAACTGCTGCATTCTTTTCA 60.057 43.478 1.31 0.00 42.39 2.69
3676 6191 0.756815 GGGCTTTTAGATGGGCTGGG 60.757 60.000 0.00 0.00 0.00 4.45
3680 6195 0.258774 TTTTAGATGGGCTGGGGAGC 59.741 55.000 0.00 0.00 0.00 4.70
3698 6216 2.010582 GCTAGGCTCAGACCGGAGTG 62.011 65.000 9.46 4.70 37.24 3.51
3701 6219 2.183046 GCTCAGACCGGAGTGCTC 59.817 66.667 9.46 0.00 37.24 4.26
3765 6285 4.335647 CCCACCTGTTGGCTCGCT 62.336 66.667 0.00 0.00 45.37 4.93
3770 6290 1.597854 CCTGTTGGCTCGCTGTTGA 60.598 57.895 0.00 0.00 0.00 3.18
3825 6354 6.985188 ATGCTACGTTTATTTCTGTCACAT 57.015 33.333 0.00 0.00 0.00 3.21
3834 6363 7.519809 CGTTTATTTCTGTCACATTTCACAGGA 60.520 37.037 0.00 0.00 40.49 3.86
3845 6374 8.015658 GTCACATTTCACAGGAAACATACTAAC 58.984 37.037 0.00 0.00 45.22 2.34
3846 6375 7.717436 TCACATTTCACAGGAAACATACTAACA 59.283 33.333 0.00 0.00 45.22 2.41
3858 6387 3.326588 ACATACTAACAGGCCACACTTCA 59.673 43.478 5.01 0.00 0.00 3.02
3912 6441 1.500474 CTGAAGGTGGCTATCCTCCA 58.500 55.000 6.49 0.00 46.13 3.86
3941 6470 0.521735 GTCGACTGGGGTTGAATTGC 59.478 55.000 8.70 0.00 37.58 3.56
4028 6557 9.883142 TGAAAGAAATTTCACCAATAACAAGTT 57.117 25.926 19.99 0.00 36.15 2.66
4073 6644 5.819901 AGAGTTTTATTGGCAGTGAGATAGC 59.180 40.000 0.00 0.00 0.00 2.97
4329 6902 1.566018 GCCACCGTTCTTCTTCCACG 61.566 60.000 0.00 0.00 0.00 4.94
4493 7066 4.405358 CAGGAGGGAAGCCATCTATAGATC 59.595 50.000 12.50 2.94 34.44 2.75
4494 7067 3.383185 GGAGGGAAGCCATCTATAGATCG 59.617 52.174 12.50 7.62 34.44 3.69
4495 7068 4.274147 GAGGGAAGCCATCTATAGATCGA 58.726 47.826 12.50 0.00 30.94 3.59
4576 7149 5.577164 GCAGGTACATATAAATAGTGAGCCG 59.423 44.000 0.00 0.00 0.00 5.52
4704 7277 9.098355 TCACAGAAAGCTTATGATATGTGTTAC 57.902 33.333 18.26 0.00 38.31 2.50
4705 7278 8.882736 CACAGAAAGCTTATGATATGTGTTACA 58.117 33.333 16.26 0.00 33.78 2.41
4710 7283 8.792830 AAGCTTATGATATGTGTTACAGTTGT 57.207 30.769 0.00 0.00 0.00 3.32
4715 7288 7.744087 ATGATATGTGTTACAGTTGTTGTGT 57.256 32.000 0.00 0.00 41.10 3.72
4739 7312 2.762535 TTGTTAGGCTGTAGGTGAGC 57.237 50.000 0.00 0.00 35.57 4.26
4743 7316 2.663196 GGCTGTAGGTGAGCCGTT 59.337 61.111 0.00 0.00 46.47 4.44
4744 7317 1.003718 GGCTGTAGGTGAGCCGTTT 60.004 57.895 0.00 0.00 46.47 3.60
4745 7318 1.298859 GGCTGTAGGTGAGCCGTTTG 61.299 60.000 0.00 0.00 46.47 2.93
4746 7319 1.298859 GCTGTAGGTGAGCCGTTTGG 61.299 60.000 0.00 0.00 40.50 3.28
4747 7320 0.673644 CTGTAGGTGAGCCGTTTGGG 60.674 60.000 0.00 0.00 40.50 4.12
4748 7321 1.376812 GTAGGTGAGCCGTTTGGGG 60.377 63.158 0.00 0.00 40.50 4.96
4749 7322 2.598787 TAGGTGAGCCGTTTGGGGG 61.599 63.158 0.00 0.00 40.50 5.40
4750 7323 4.280019 GGTGAGCCGTTTGGGGGT 62.280 66.667 0.00 0.00 41.36 4.95
4760 7333 1.381872 TTTGGGGGTGTGGTTGGTG 60.382 57.895 0.00 0.00 0.00 4.17
4791 7366 5.705609 TTGGAAAACACTGCTAATTCTCC 57.294 39.130 0.00 0.00 0.00 3.71
4830 7405 7.560368 TGTTTGGTCATCTAACATTTTGGTTT 58.440 30.769 0.00 0.00 32.29 3.27
4835 7410 5.569059 GTCATCTAACATTTTGGTTTCGCTG 59.431 40.000 0.00 0.00 32.29 5.18
4842 7417 4.098807 ACATTTTGGTTTCGCTGTTAGGTT 59.901 37.500 0.00 0.00 0.00 3.50
4973 7550 3.751175 CGTTGATTGGATTGGTACAGTGT 59.249 43.478 0.00 0.00 42.39 3.55
5012 7593 1.665679 CGTCTTCATCCGTTCATTGGG 59.334 52.381 0.00 0.00 0.00 4.12
5062 7643 6.458478 CGAGAAACCTCATACAGTAGATCGTT 60.458 42.308 0.00 0.00 0.00 3.85
5082 7663 5.518847 TCGTTCATCTTCATCCGTTCATTAC 59.481 40.000 0.00 0.00 0.00 1.89
5086 7667 7.107639 TCATCTTCATCCGTTCATTACACTA 57.892 36.000 0.00 0.00 0.00 2.74
5089 7670 9.645059 CATCTTCATCCGTTCATTACACTATAT 57.355 33.333 0.00 0.00 0.00 0.86
5259 7840 5.032846 AGAGGAGGGAAATTCAGTATCACA 58.967 41.667 0.00 0.00 0.00 3.58
5270 7851 3.632189 TCAGTATCACAATGCTCGATCG 58.368 45.455 9.36 9.36 0.00 3.69
5278 7859 2.852413 ACAATGCTCGATCGAAACTACG 59.148 45.455 19.92 7.35 0.00 3.51
5281 7862 0.840729 GCTCGATCGAAACTACGCAG 59.159 55.000 19.92 5.07 0.00 5.18
5283 7864 2.538333 GCTCGATCGAAACTACGCAGTA 60.538 50.000 19.92 0.00 45.11 2.74
5284 7865 3.027710 CTCGATCGAAACTACGCAGTAC 58.972 50.000 19.92 0.00 45.11 2.73
5285 7866 2.107178 CGATCGAAACTACGCAGTACC 58.893 52.381 10.26 0.00 45.11 3.34
5287 7868 0.168788 TCGAAACTACGCAGTACCCG 59.831 55.000 0.00 2.36 45.11 5.28
5288 7869 0.799534 CGAAACTACGCAGTACCCGG 60.800 60.000 0.00 0.00 45.11 5.73
5289 7870 0.527565 GAAACTACGCAGTACCCGGA 59.472 55.000 0.73 0.00 45.11 5.14
5291 7872 1.941999 AACTACGCAGTACCCGGAGC 61.942 60.000 13.89 0.00 45.11 4.70
5293 7874 1.940883 CTACGCAGTACCCGGAGCAA 61.941 60.000 0.73 0.00 45.11 3.91
5294 7875 1.324740 TACGCAGTACCCGGAGCAAT 61.325 55.000 0.73 0.00 45.11 3.56
5295 7876 1.449601 CGCAGTACCCGGAGCAATT 60.450 57.895 0.73 0.00 0.00 2.32
5296 7877 0.179094 CGCAGTACCCGGAGCAATTA 60.179 55.000 0.73 0.00 0.00 1.40
5298 7879 1.134491 GCAGTACCCGGAGCAATTACT 60.134 52.381 0.73 0.00 0.00 2.24
5299 7880 2.101917 GCAGTACCCGGAGCAATTACTA 59.898 50.000 0.73 0.00 0.00 1.82
5300 7881 3.244112 GCAGTACCCGGAGCAATTACTAT 60.244 47.826 0.73 0.00 0.00 2.12
5301 7882 4.307432 CAGTACCCGGAGCAATTACTATG 58.693 47.826 0.73 0.00 0.00 2.23
5360 7941 6.349280 GCATTGTACTTAAAGCATCTCCAACA 60.349 38.462 0.00 0.00 0.00 3.33
5362 7943 5.865085 TGTACTTAAAGCATCTCCAACACT 58.135 37.500 0.00 0.00 0.00 3.55
5366 7947 3.498774 AAAGCATCTCCAACACTGACT 57.501 42.857 0.00 0.00 0.00 3.41
5369 7950 2.233431 AGCATCTCCAACACTGACTCTC 59.767 50.000 0.00 0.00 0.00 3.20
5373 7954 4.753516 TCTCCAACACTGACTCTCAAAA 57.246 40.909 0.00 0.00 0.00 2.44
5380 7961 1.344763 ACTGACTCTCAAAACCTCCCG 59.655 52.381 0.00 0.00 0.00 5.14
5381 7962 0.034896 TGACTCTCAAAACCTCCCGC 59.965 55.000 0.00 0.00 0.00 6.13
5388 7969 1.376812 AAAACCTCCCGCATCCGTC 60.377 57.895 0.00 0.00 0.00 4.79
5403 7984 0.463204 CCGTCTGGATCATGCTGTCT 59.537 55.000 0.00 0.00 37.49 3.41
5427 8008 1.086696 AGCGAAATCCATCCAACGTG 58.913 50.000 0.00 0.00 0.00 4.49
5428 8009 0.098728 GCGAAATCCATCCAACGTGG 59.901 55.000 0.00 0.00 39.43 4.94
5431 8012 0.251564 AAATCCATCCAACGTGGGCA 60.252 50.000 3.23 0.00 38.32 5.36
5439 8020 0.461163 CCAACGTGGGCATGTATCGA 60.461 55.000 0.00 0.00 32.67 3.59
5447 8028 0.670546 GGCATGTATCGATCCGTGGG 60.671 60.000 11.62 0.00 0.00 4.61
5453 8034 1.111116 TATCGATCCGTGGGGTGGTC 61.111 60.000 0.00 0.00 33.83 4.02
5455 8036 2.687566 GATCCGTGGGGTGGTCCT 60.688 66.667 0.00 0.00 35.33 3.85
5460 8041 4.016706 GTGGGGTGGTCCTGACGG 62.017 72.222 0.00 0.00 35.33 4.79
5490 8071 1.190763 CGTAAACCGGAGACAAACGTG 59.809 52.381 9.46 0.00 0.00 4.49
5495 8076 2.874664 CGGAGACAAACGTGGGGGA 61.875 63.158 0.00 0.00 0.00 4.81
5501 8082 0.753848 ACAAACGTGGGGGACTTTGG 60.754 55.000 0.00 0.00 31.88 3.28
5502 8083 1.830847 AAACGTGGGGGACTTTGGC 60.831 57.895 0.00 0.00 0.00 4.52
5538 8119 1.576421 CAAGCCTTGTTCTGACCGC 59.424 57.895 0.00 0.00 0.00 5.68
5539 8120 0.886490 CAAGCCTTGTTCTGACCGCT 60.886 55.000 0.00 0.00 0.00 5.52
5540 8121 0.179018 AAGCCTTGTTCTGACCGCTT 60.179 50.000 0.00 0.00 31.02 4.68
5563 8144 0.105709 CCCACCAAAAACCTCACCCT 60.106 55.000 0.00 0.00 0.00 4.34
5565 8146 1.328279 CACCAAAAACCTCACCCTCC 58.672 55.000 0.00 0.00 0.00 4.30
5568 8149 0.541998 CAAAAACCTCACCCTCCCCC 60.542 60.000 0.00 0.00 0.00 5.40
5582 8163 3.942601 CCCCCACACGTTTTTGGT 58.057 55.556 6.81 0.00 0.00 3.67
5583 8164 1.737201 CCCCCACACGTTTTTGGTC 59.263 57.895 6.81 0.00 0.00 4.02
5584 8165 1.737201 CCCCACACGTTTTTGGTCC 59.263 57.895 6.81 0.00 0.00 4.46
5585 8166 1.357334 CCCACACGTTTTTGGTCCG 59.643 57.895 6.81 0.00 0.00 4.79
5586 8167 1.298788 CCACACGTTTTTGGTCCGC 60.299 57.895 0.00 0.00 0.00 5.54
5628 8209 3.891400 CATTCATGCCCGGCCACG 61.891 66.667 7.03 0.00 40.55 4.94
5629 8210 4.108299 ATTCATGCCCGGCCACGA 62.108 61.111 7.03 0.00 44.60 4.35
5645 8230 2.430921 GACGTGACCGCTCACTGG 60.431 66.667 9.10 0.00 44.27 4.00
5672 8257 3.726517 CGTTGCTTCCCGGTGCAG 61.727 66.667 12.54 1.39 40.46 4.41
5692 8283 2.099062 GACTGCCGCGCATTCAAG 59.901 61.111 8.75 0.00 37.98 3.02
5703 8294 0.247814 GCATTCAAGCGACACGATGG 60.248 55.000 0.00 0.00 0.00 3.51
5723 8314 2.024868 CGCGTGTCCGTCCATTTGA 61.025 57.895 0.00 0.00 36.15 2.69
5724 8315 1.358725 CGCGTGTCCGTCCATTTGAT 61.359 55.000 0.00 0.00 36.15 2.57
5727 8318 0.451783 GTGTCCGTCCATTTGATGCC 59.548 55.000 0.00 0.00 0.00 4.40
5729 8320 0.679640 GTCCGTCCATTTGATGCCCA 60.680 55.000 0.00 0.00 0.00 5.36
5730 8321 0.258484 TCCGTCCATTTGATGCCCAT 59.742 50.000 0.00 0.00 0.00 4.00
5738 8329 4.020928 TCCATTTGATGCCCATATTGATGC 60.021 41.667 0.00 0.00 0.00 3.91
5743 8334 0.106769 TGCCCATATTGATGCCACGT 60.107 50.000 0.00 0.00 0.00 4.49
5795 8386 4.864334 CATCCCTCTGCCGCCCAC 62.864 72.222 0.00 0.00 0.00 4.61
5810 8401 3.069443 CCGCCCACCATTGCTATAAAAAT 59.931 43.478 0.00 0.00 0.00 1.82
5819 8410 3.290948 TGCTATAAAAATCGGTGCCCT 57.709 42.857 0.00 0.00 0.00 5.19
5826 8417 4.511246 ATCGGTGCCCTGGCCATG 62.511 66.667 5.51 2.45 41.09 3.66
5845 8436 4.864334 CCGCAGCCATCCACCTCC 62.864 72.222 0.00 0.00 0.00 4.30
5850 8441 0.466922 CAGCCATCCACCTCCAATCC 60.467 60.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.254032 AGGAAAATCTTGAGGACCCAATACT 59.746 40.000 0.00 0.00 0.00 2.12
6 7 4.601857 ACTAGGAAAATCTTGAGGACCCAA 59.398 41.667 0.00 0.00 0.00 4.12
16 17 5.998363 ACGAGCAAGAAACTAGGAAAATCTT 59.002 36.000 0.00 0.00 0.00 2.40
17 18 5.552178 ACGAGCAAGAAACTAGGAAAATCT 58.448 37.500 0.00 0.00 0.00 2.40
42 43 3.785122 AAACCAGGTGGCGGTGTCC 62.785 63.158 0.00 0.00 36.67 4.02
43 44 0.535553 TAAAACCAGGTGGCGGTGTC 60.536 55.000 0.00 0.00 36.67 3.67
44 45 0.536460 CTAAAACCAGGTGGCGGTGT 60.536 55.000 0.00 0.00 36.67 4.16
45 46 0.250553 TCTAAAACCAGGTGGCGGTG 60.251 55.000 0.00 0.00 36.67 4.94
46 47 0.696501 ATCTAAAACCAGGTGGCGGT 59.303 50.000 0.00 0.00 39.32 5.68
47 48 1.743394 GAATCTAAAACCAGGTGGCGG 59.257 52.381 0.00 0.00 39.32 6.13
50 51 4.034285 ACAGGAATCTAAAACCAGGTGG 57.966 45.455 0.00 0.00 42.17 4.61
51 52 4.827284 ACAACAGGAATCTAAAACCAGGTG 59.173 41.667 0.00 0.00 34.77 4.00
52 53 5.061721 ACAACAGGAATCTAAAACCAGGT 57.938 39.130 0.00 0.00 0.00 4.00
54 55 6.633500 TCAACAACAGGAATCTAAAACCAG 57.367 37.500 0.00 0.00 0.00 4.00
55 56 6.040391 CCTTCAACAACAGGAATCTAAAACCA 59.960 38.462 0.00 0.00 30.81 3.67
56 57 6.447162 CCTTCAACAACAGGAATCTAAAACC 58.553 40.000 0.00 0.00 30.81 3.27
57 58 5.920840 GCCTTCAACAACAGGAATCTAAAAC 59.079 40.000 0.00 0.00 30.81 2.43
59 60 5.385198 AGCCTTCAACAACAGGAATCTAAA 58.615 37.500 0.00 0.00 30.81 1.85
101 104 3.933332 GGAGACAACAAGTACATAGCACC 59.067 47.826 0.00 0.00 0.00 5.01
102 105 4.822026 AGGAGACAACAAGTACATAGCAC 58.178 43.478 0.00 0.00 0.00 4.40
103 106 6.791867 ATAGGAGACAACAAGTACATAGCA 57.208 37.500 0.00 0.00 0.00 3.49
104 107 7.265673 TCAATAGGAGACAACAAGTACATAGC 58.734 38.462 0.00 0.00 0.00 2.97
164 171 6.463995 AAATGAGCTACAACCAAAACAAGA 57.536 33.333 0.00 0.00 0.00 3.02
198 205 4.082895 GCTTCATGCAACAGAGTGAAAGAT 60.083 41.667 0.00 0.00 42.31 2.40
249 256 1.075374 AGCAAACCCCACAGCATAAGA 59.925 47.619 0.00 0.00 0.00 2.10
256 263 3.686016 ACTGTATAAGCAAACCCCACAG 58.314 45.455 0.00 0.00 38.26 3.66
267 274 5.041940 CCAACCGTAGAAGACTGTATAAGC 58.958 45.833 0.00 0.00 0.00 3.09
274 281 0.608640 AGCCCAACCGTAGAAGACTG 59.391 55.000 0.00 0.00 0.00 3.51
275 282 1.349067 AAGCCCAACCGTAGAAGACT 58.651 50.000 0.00 0.00 0.00 3.24
281 288 4.841443 AAAAAGTTAAGCCCAACCGTAG 57.159 40.909 0.00 0.00 0.00 3.51
347 358 3.055963 CAGCAAAATTGGGTATGCTTCCA 60.056 43.478 0.00 0.00 46.36 3.53
362 373 4.098914 AGGGAGTACATTCACAGCAAAA 57.901 40.909 0.00 0.00 0.00 2.44
363 374 3.788227 AGGGAGTACATTCACAGCAAA 57.212 42.857 0.00 0.00 0.00 3.68
365 376 2.290260 CCAAGGGAGTACATTCACAGCA 60.290 50.000 0.00 0.00 0.00 4.41
366 377 2.290323 ACCAAGGGAGTACATTCACAGC 60.290 50.000 0.00 0.00 0.00 4.40
367 378 3.703001 ACCAAGGGAGTACATTCACAG 57.297 47.619 0.00 0.00 0.00 3.66
368 379 5.570205 TTTACCAAGGGAGTACATTCACA 57.430 39.130 0.00 0.00 0.00 3.58
369 380 8.570068 TTAATTTACCAAGGGAGTACATTCAC 57.430 34.615 0.00 0.00 0.00 3.18
370 381 9.184523 CATTAATTTACCAAGGGAGTACATTCA 57.815 33.333 0.00 0.00 0.00 2.57
371 382 9.185680 ACATTAATTTACCAAGGGAGTACATTC 57.814 33.333 0.00 0.00 0.00 2.67
372 383 9.185680 GACATTAATTTACCAAGGGAGTACATT 57.814 33.333 0.00 0.00 0.00 2.71
378 415 5.190677 ACGGACATTAATTTACCAAGGGAG 58.809 41.667 0.00 0.00 0.00 4.30
384 421 5.075858 AGACGACGGACATTAATTTACCA 57.924 39.130 0.00 0.00 0.00 3.25
385 422 6.974622 TCTAAGACGACGGACATTAATTTACC 59.025 38.462 0.00 0.00 0.00 2.85
388 425 8.388103 CAAATCTAAGACGACGGACATTAATTT 58.612 33.333 0.00 0.00 0.00 1.82
446 483 8.817092 TGTTCTTATATTTTAGGACAAAGGGG 57.183 34.615 0.00 0.00 27.01 4.79
479 516 9.907229 TTGAGACAGAGAGAGTATAAGACATTA 57.093 33.333 0.00 0.00 0.00 1.90
480 517 8.815565 TTGAGACAGAGAGAGTATAAGACATT 57.184 34.615 0.00 0.00 0.00 2.71
481 518 8.815565 TTTGAGACAGAGAGAGTATAAGACAT 57.184 34.615 0.00 0.00 0.00 3.06
482 519 8.637196 TTTTGAGACAGAGAGAGTATAAGACA 57.363 34.615 0.00 0.00 0.00 3.41
529 566 8.808092 TCCGTCCCAAAATATAAGAACATTTTT 58.192 29.630 0.00 0.00 33.23 1.94
530 567 8.356000 TCCGTCCCAAAATATAAGAACATTTT 57.644 30.769 0.00 0.00 35.30 1.82
531 568 7.068226 CCTCCGTCCCAAAATATAAGAACATTT 59.932 37.037 0.00 0.00 0.00 2.32
532 569 6.546034 CCTCCGTCCCAAAATATAAGAACATT 59.454 38.462 0.00 0.00 0.00 2.71
533 570 6.062095 CCTCCGTCCCAAAATATAAGAACAT 58.938 40.000 0.00 0.00 0.00 2.71
534 571 5.433526 CCTCCGTCCCAAAATATAAGAACA 58.566 41.667 0.00 0.00 0.00 3.18
535 572 4.820173 CCCTCCGTCCCAAAATATAAGAAC 59.180 45.833 0.00 0.00 0.00 3.01
536 573 4.722781 TCCCTCCGTCCCAAAATATAAGAA 59.277 41.667 0.00 0.00 0.00 2.52
537 574 4.300345 TCCCTCCGTCCCAAAATATAAGA 58.700 43.478 0.00 0.00 0.00 2.10
538 575 4.102681 ACTCCCTCCGTCCCAAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
539 576 4.042174 ACTCCCTCCGTCCCAAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
540 577 3.660959 ACTCCCTCCGTCCCAAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
541 578 2.488836 ACTCCCTCCGTCCCAAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
542 579 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
543 580 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
544 581 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
545 582 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
546 583 2.245546 TCTTATACTCCCTCCGTCCCAA 59.754 50.000 0.00 0.00 0.00 4.12
547 584 1.854939 TCTTATACTCCCTCCGTCCCA 59.145 52.381 0.00 0.00 0.00 4.37
548 585 2.237643 GTCTTATACTCCCTCCGTCCC 58.762 57.143 0.00 0.00 0.00 4.46
549 586 2.941480 TGTCTTATACTCCCTCCGTCC 58.059 52.381 0.00 0.00 0.00 4.79
550 587 5.532664 AATTGTCTTATACTCCCTCCGTC 57.467 43.478 0.00 0.00 0.00 4.79
551 588 5.952347 AAATTGTCTTATACTCCCTCCGT 57.048 39.130 0.00 0.00 0.00 4.69
552 589 6.821665 TCAAAAATTGTCTTATACTCCCTCCG 59.178 38.462 0.00 0.00 0.00 4.63
553 590 7.067129 GGTCAAAAATTGTCTTATACTCCCTCC 59.933 40.741 0.00 0.00 0.00 4.30
554 591 7.829706 AGGTCAAAAATTGTCTTATACTCCCTC 59.170 37.037 0.00 0.00 0.00 4.30
555 592 7.611855 CAGGTCAAAAATTGTCTTATACTCCCT 59.388 37.037 0.00 0.00 0.00 4.20
556 593 7.393515 ACAGGTCAAAAATTGTCTTATACTCCC 59.606 37.037 0.00 0.00 0.00 4.30
557 594 8.237267 CACAGGTCAAAAATTGTCTTATACTCC 58.763 37.037 0.00 0.00 0.00 3.85
558 595 8.999431 TCACAGGTCAAAAATTGTCTTATACTC 58.001 33.333 0.00 0.00 0.00 2.59
559 596 8.784043 GTCACAGGTCAAAAATTGTCTTATACT 58.216 33.333 0.00 0.00 0.00 2.12
560 597 8.564574 TGTCACAGGTCAAAAATTGTCTTATAC 58.435 33.333 0.00 0.00 0.00 1.47
561 598 8.564574 GTGTCACAGGTCAAAAATTGTCTTATA 58.435 33.333 0.00 0.00 0.00 0.98
562 599 7.285401 AGTGTCACAGGTCAAAAATTGTCTTAT 59.715 33.333 5.62 0.00 0.00 1.73
563 600 6.601613 AGTGTCACAGGTCAAAAATTGTCTTA 59.398 34.615 5.62 0.00 0.00 2.10
564 601 5.418840 AGTGTCACAGGTCAAAAATTGTCTT 59.581 36.000 5.62 0.00 0.00 3.01
565 602 4.949856 AGTGTCACAGGTCAAAAATTGTCT 59.050 37.500 5.62 0.00 0.00 3.41
566 603 5.036737 CAGTGTCACAGGTCAAAAATTGTC 58.963 41.667 5.62 0.00 0.00 3.18
570 607 2.362077 GCCAGTGTCACAGGTCAAAAAT 59.638 45.455 15.20 0.00 0.00 1.82
589 626 4.601315 GACGTTTTTCACACGGCC 57.399 55.556 0.00 0.00 39.97 6.13
590 627 2.030701 TGTAAGACGTTTTTCACACGGC 59.969 45.455 0.00 0.00 46.70 5.68
591 628 3.929417 TGTAAGACGTTTTTCACACGG 57.071 42.857 0.00 0.00 42.14 4.94
592 629 6.784068 AAATTGTAAGACGTTTTTCACACG 57.216 33.333 0.00 0.00 43.52 4.49
593 630 6.892430 GCAAAATTGTAAGACGTTTTTCACAC 59.108 34.615 0.00 0.00 0.00 3.82
594 631 6.809196 AGCAAAATTGTAAGACGTTTTTCACA 59.191 30.769 0.00 0.00 0.00 3.58
595 632 7.216920 AGCAAAATTGTAAGACGTTTTTCAC 57.783 32.000 0.00 0.00 0.00 3.18
596 633 7.201478 CCAAGCAAAATTGTAAGACGTTTTTCA 60.201 33.333 0.00 0.00 0.00 2.69
597 634 7.116819 CCAAGCAAAATTGTAAGACGTTTTTC 58.883 34.615 0.00 0.00 0.00 2.29
599 636 6.103330 ACCAAGCAAAATTGTAAGACGTTTT 58.897 32.000 0.00 0.00 0.00 2.43
600 637 5.656480 ACCAAGCAAAATTGTAAGACGTTT 58.344 33.333 0.00 0.00 0.00 3.60
601 638 5.257082 ACCAAGCAAAATTGTAAGACGTT 57.743 34.783 0.00 0.00 0.00 3.99
607 2602 9.347934 CGAACATAATACCAAGCAAAATTGTAA 57.652 29.630 0.00 0.00 0.00 2.41
619 2614 5.412904 TGACATTGTGCGAACATAATACCAA 59.587 36.000 0.00 0.00 35.64 3.67
631 2626 3.773860 ACTGTTTTTGACATTGTGCGA 57.226 38.095 0.00 0.00 37.69 5.10
652 2647 9.793259 GGAACTCCATCCATCACTTAATATAAA 57.207 33.333 0.00 0.00 39.42 1.40
659 2654 5.724370 TGTTAGGAACTCCATCCATCACTTA 59.276 40.000 0.00 0.00 42.27 2.24
702 2697 9.671279 TTTCTGCAAAATTCTGATGTATCTAGA 57.329 29.630 0.00 0.00 0.00 2.43
705 2700 8.800332 ACTTTTCTGCAAAATTCTGATGTATCT 58.200 29.630 0.00 0.00 30.91 1.98
706 2701 8.976986 ACTTTTCTGCAAAATTCTGATGTATC 57.023 30.769 0.00 0.00 30.91 2.24
707 2702 9.768662 AAACTTTTCTGCAAAATTCTGATGTAT 57.231 25.926 0.00 0.00 30.91 2.29
724 2719 7.325097 CGTTTGTACTGTGTTCAAAACTTTTCT 59.675 33.333 4.55 0.00 35.35 2.52
733 2728 3.729462 GCTTGCGTTTGTACTGTGTTCAA 60.729 43.478 0.00 0.00 0.00 2.69
734 2729 2.223157 GCTTGCGTTTGTACTGTGTTCA 60.223 45.455 0.00 0.00 0.00 3.18
735 2730 2.223157 TGCTTGCGTTTGTACTGTGTTC 60.223 45.455 0.00 0.00 0.00 3.18
736 2731 1.740585 TGCTTGCGTTTGTACTGTGTT 59.259 42.857 0.00 0.00 0.00 3.32
737 2732 1.330521 CTGCTTGCGTTTGTACTGTGT 59.669 47.619 0.00 0.00 0.00 3.72
739 2734 1.948104 TCTGCTTGCGTTTGTACTGT 58.052 45.000 0.00 0.00 0.00 3.55
740 2735 3.332761 TTTCTGCTTGCGTTTGTACTG 57.667 42.857 0.00 0.00 0.00 2.74
803 2798 7.011950 CAGCATTTCATTTGTATAACGGGAGTA 59.988 37.037 0.00 0.00 46.69 2.59
827 2822 6.927381 ACTTTCCTGCAAATTTCTGAAATCAG 59.073 34.615 15.43 16.43 45.08 2.90
828 2823 6.819284 ACTTTCCTGCAAATTTCTGAAATCA 58.181 32.000 15.43 8.95 0.00 2.57
854 2849 3.241995 CGTCATGTTAGGTTCGCTAAAGC 60.242 47.826 0.00 0.00 35.53 3.51
900 2895 3.594603 TCGTCCATCCAAAACTCTCTC 57.405 47.619 0.00 0.00 0.00 3.20
949 2944 6.159988 ACAGTTTCTAAGCAGTGAGATGTAC 58.840 40.000 0.00 0.00 0.00 2.90
985 2982 2.811902 TTGCAATCAGAGATTTCGCG 57.188 45.000 0.00 0.00 0.00 5.87
993 2990 1.512734 GCCGCGTTTGCAATCAGAG 60.513 57.895 4.92 0.00 42.97 3.35
994 2991 1.965930 AGCCGCGTTTGCAATCAGA 60.966 52.632 4.92 0.00 42.97 3.27
999 2996 2.331098 CTTCAGCCGCGTTTGCAA 59.669 55.556 4.92 0.00 42.97 4.08
1010 3007 3.435186 GCACCTTCGGGCTTCAGC 61.435 66.667 0.00 0.00 39.10 4.26
1187 3218 2.787866 CCTTGAGGAGGGAGGGGA 59.212 66.667 0.00 0.00 42.26 4.81
1201 3236 0.179018 GGGAATGCGTCATAGGCCTT 60.179 55.000 12.58 0.00 0.00 4.35
1208 3243 0.249120 TGTTCGAGGGAATGCGTCAT 59.751 50.000 0.00 0.00 34.05 3.06
1298 3333 2.146061 GCTGGAGGAGGGGAGATGG 61.146 68.421 0.00 0.00 0.00 3.51
1384 3419 6.037172 CGAATGTGGTAGGAATTAAGAACTGG 59.963 42.308 0.00 0.00 0.00 4.00
1386 3421 6.708285 ACGAATGTGGTAGGAATTAAGAACT 58.292 36.000 0.00 0.00 0.00 3.01
1387 3422 6.980051 ACGAATGTGGTAGGAATTAAGAAC 57.020 37.500 0.00 0.00 0.00 3.01
1405 3440 6.186234 ACTAGTACTCCCTCTGTAAACGAAT 58.814 40.000 0.00 0.00 0.00 3.34
1406 3441 5.564550 ACTAGTACTCCCTCTGTAAACGAA 58.435 41.667 0.00 0.00 0.00 3.85
1407 3442 5.171339 ACTAGTACTCCCTCTGTAAACGA 57.829 43.478 0.00 0.00 0.00 3.85
1409 3444 7.122501 AGCTAAACTAGTACTCCCTCTGTAAAC 59.877 40.741 0.00 0.00 0.00 2.01
1411 3446 6.729428 AGCTAAACTAGTACTCCCTCTGTAA 58.271 40.000 0.00 0.00 0.00 2.41
1413 3448 5.195848 AGCTAAACTAGTACTCCCTCTGT 57.804 43.478 0.00 0.00 0.00 3.41
1414 3449 6.120905 TGTAGCTAAACTAGTACTCCCTCTG 58.879 44.000 0.00 0.00 0.00 3.35
1415 3450 6.324601 TGTAGCTAAACTAGTACTCCCTCT 57.675 41.667 0.00 0.00 0.00 3.69
1416 3451 5.008911 GCTGTAGCTAAACTAGTACTCCCTC 59.991 48.000 0.00 0.00 38.21 4.30
1417 3452 4.888823 GCTGTAGCTAAACTAGTACTCCCT 59.111 45.833 0.00 0.00 38.21 4.20
1418 3453 4.643784 TGCTGTAGCTAAACTAGTACTCCC 59.356 45.833 0.00 0.00 42.66 4.30
1419 3454 5.831702 TGCTGTAGCTAAACTAGTACTCC 57.168 43.478 0.00 0.00 42.66 3.85
1467 3504 6.479006 TGAACAATTGACCTCAGATTCATCT 58.521 36.000 13.59 0.00 37.72 2.90
1500 3537 5.003804 ACTGAGTAACATCATCCACAAACC 58.996 41.667 0.00 0.00 0.00 3.27
1627 3671 0.530870 GACCAGACGGAGCTAATGCC 60.531 60.000 0.00 0.00 36.20 4.40
1720 3764 3.743521 TGCATCCTACAAGCCATACATC 58.256 45.455 0.00 0.00 0.00 3.06
1754 3798 5.979517 AGTTTAGCATTGTGAAGCAAGTTTC 59.020 36.000 0.00 0.00 40.86 2.78
1791 3835 0.689623 ACCAGAGAACCCAAGCTGAG 59.310 55.000 0.00 0.00 0.00 3.35
1821 3865 5.969435 GTGTAGCAACCAAACAAAAGTCTAC 59.031 40.000 0.00 0.00 0.00 2.59
1880 3924 9.461312 ACAGCTATCATTTCATGGTAAAAGTAA 57.539 29.630 0.00 0.00 0.00 2.24
1914 3959 9.916397 GACTATAAATACACCTCAACGATTTTG 57.084 33.333 0.00 0.00 0.00 2.44
1949 3994 8.874156 TCTACGGGAAGATGAATACTAGTACTA 58.126 37.037 4.31 1.89 0.00 1.82
1965 4010 4.113354 GCTCATGTTAACTCTACGGGAAG 58.887 47.826 7.22 0.00 0.00 3.46
2034 4083 5.470845 ACAAAATGAAGTATCTAGCGTGC 57.529 39.130 0.00 0.00 0.00 5.34
2088 4138 7.049754 GCCCTGAACCATAAAATGAATTCAAT 58.950 34.615 13.09 0.02 35.89 2.57
2316 4369 3.256383 TGACAACTGAGGCATGGAAAATG 59.744 43.478 0.00 0.00 0.00 2.32
2345 4398 4.497291 TTTTATGCCACGGGTTCTATCT 57.503 40.909 0.00 0.00 0.00 1.98
2356 4409 9.593134 TGGTTATATTCAACAATTTTATGCCAC 57.407 29.630 0.00 0.00 0.00 5.01
2368 4421 6.876155 AGCATGCAAATGGTTATATTCAACA 58.124 32.000 21.98 0.00 0.00 3.33
2376 4429 3.068024 CCCGTTAGCATGCAAATGGTTAT 59.932 43.478 21.98 0.00 33.86 1.89
2380 4433 0.817013 ACCCGTTAGCATGCAAATGG 59.183 50.000 21.98 15.54 0.00 3.16
2394 4447 2.046314 CGAGGCAAATGGACCCGT 60.046 61.111 0.00 0.00 0.00 5.28
2529 4589 6.002062 AGCTGACAGCAAATTGTTAAGTAC 57.998 37.500 28.43 0.00 45.56 2.73
2532 4592 5.766222 AGAAGCTGACAGCAAATTGTTAAG 58.234 37.500 28.43 0.00 45.56 1.85
2533 4593 5.772825 AGAAGCTGACAGCAAATTGTTAA 57.227 34.783 28.43 0.00 45.56 2.01
2544 4604 6.265196 AGGATATGACTAGAAGAAGCTGACAG 59.735 42.308 0.00 0.00 0.00 3.51
2607 4667 2.162681 CCCTGGTAAGAGTTGCCTTTG 58.837 52.381 0.00 0.00 36.27 2.77
2638 4698 7.336931 ACCACTGGTTAAGTATGATGAAACATC 59.663 37.037 0.00 4.98 36.83 3.06
2664 4724 3.457380 CCTCCATCTTCTTCCTGGATTCA 59.543 47.826 0.00 0.00 38.36 2.57
2679 4739 2.755952 ATTTAAGCCCACCCTCCATC 57.244 50.000 0.00 0.00 0.00 3.51
2764 4824 9.416284 TCTCTAGTATTGATGTATTGGTGTGTA 57.584 33.333 0.00 0.00 0.00 2.90
2806 4866 7.124147 TCACACCAATACATCAATACTCTCTGA 59.876 37.037 0.00 0.00 0.00 3.27
2809 4869 8.492673 TTTCACACCAATACATCAATACTCTC 57.507 34.615 0.00 0.00 0.00 3.20
2811 4871 8.677300 ACATTTCACACCAATACATCAATACTC 58.323 33.333 0.00 0.00 0.00 2.59
2812 4872 8.579850 ACATTTCACACCAATACATCAATACT 57.420 30.769 0.00 0.00 0.00 2.12
2813 4873 9.075519 CAACATTTCACACCAATACATCAATAC 57.924 33.333 0.00 0.00 0.00 1.89
2814 4874 7.758980 GCAACATTTCACACCAATACATCAATA 59.241 33.333 0.00 0.00 0.00 1.90
2817 4877 5.243507 AGCAACATTTCACACCAATACATCA 59.756 36.000 0.00 0.00 0.00 3.07
2818 4878 5.713025 AGCAACATTTCACACCAATACATC 58.287 37.500 0.00 0.00 0.00 3.06
2819 4879 5.726980 AGCAACATTTCACACCAATACAT 57.273 34.783 0.00 0.00 0.00 2.29
2820 4880 5.528043 AAGCAACATTTCACACCAATACA 57.472 34.783 0.00 0.00 0.00 2.29
2821 4881 9.072294 GTAATAAGCAACATTTCACACCAATAC 57.928 33.333 0.00 0.00 0.00 1.89
2822 4882 7.965655 CGTAATAAGCAACATTTCACACCAATA 59.034 33.333 0.00 0.00 0.00 1.90
2825 4885 5.335269 CCGTAATAAGCAACATTTCACACCA 60.335 40.000 0.00 0.00 0.00 4.17
2826 4886 5.092781 CCGTAATAAGCAACATTTCACACC 58.907 41.667 0.00 0.00 0.00 4.16
2827 4887 4.557301 GCCGTAATAAGCAACATTTCACAC 59.443 41.667 0.00 0.00 0.00 3.82
2828 4888 4.457603 AGCCGTAATAAGCAACATTTCACA 59.542 37.500 0.00 0.00 0.00 3.58
2829 4889 4.981794 AGCCGTAATAAGCAACATTTCAC 58.018 39.130 0.00 0.00 0.00 3.18
2830 4890 6.935741 ATAGCCGTAATAAGCAACATTTCA 57.064 33.333 0.00 0.00 0.00 2.69
2831 4891 7.193595 ACAATAGCCGTAATAAGCAACATTTC 58.806 34.615 0.00 0.00 0.00 2.17
2832 4892 7.095695 ACAATAGCCGTAATAAGCAACATTT 57.904 32.000 0.00 0.00 0.00 2.32
2833 4893 6.693315 ACAATAGCCGTAATAAGCAACATT 57.307 33.333 0.00 0.00 0.00 2.71
2834 4894 6.764085 TGTACAATAGCCGTAATAAGCAACAT 59.236 34.615 0.00 0.00 0.00 2.71
2844 4904 2.094078 AGGCGTTGTACAATAGCCGTAA 60.094 45.455 33.09 3.69 45.30 3.18
2848 4908 2.629051 AGAAGGCGTTGTACAATAGCC 58.371 47.619 33.02 33.02 42.93 3.93
2875 4935 2.917227 CACCGGGCTGCCCTTTTT 60.917 61.111 33.39 13.23 42.67 1.94
2886 4946 3.701604 GAGAGCTACGTGCACCGGG 62.702 68.421 12.15 0.00 45.94 5.73
2887 4947 2.202623 GAGAGCTACGTGCACCGG 60.203 66.667 12.15 0.00 45.94 5.28
2888 4948 2.577112 CGAGAGCTACGTGCACCG 60.577 66.667 12.15 9.19 45.94 4.94
2913 4973 4.735599 GACCCTTCCCCGGACCCT 62.736 72.222 0.73 0.00 0.00 4.34
2920 4980 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
2921 4981 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2922 4982 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2923 4983 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2924 4984 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2925 4985 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
2926 4986 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
2927 4987 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
2928 4988 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
2933 4993 4.719773 TGCATACTATAGACCCAAAGTGGT 59.280 41.667 6.78 0.00 42.79 4.16
2934 4994 5.290493 TGCATACTATAGACCCAAAGTGG 57.710 43.478 6.78 0.00 37.25 4.00
2935 4995 4.752101 GCTGCATACTATAGACCCAAAGTG 59.248 45.833 6.78 0.00 0.00 3.16
2936 4996 4.202367 GGCTGCATACTATAGACCCAAAGT 60.202 45.833 6.78 0.00 0.00 2.66
2937 4997 4.040952 AGGCTGCATACTATAGACCCAAAG 59.959 45.833 6.78 0.00 0.00 2.77
2938 4998 3.973973 AGGCTGCATACTATAGACCCAAA 59.026 43.478 6.78 0.00 0.00 3.28
2939 4999 3.587498 AGGCTGCATACTATAGACCCAA 58.413 45.455 6.78 0.00 0.00 4.12
2940 5000 3.260269 AGGCTGCATACTATAGACCCA 57.740 47.619 6.78 0.00 0.00 4.51
2941 5001 4.563786 GGAAAGGCTGCATACTATAGACCC 60.564 50.000 6.78 0.00 0.00 4.46
2942 5002 4.563786 GGGAAAGGCTGCATACTATAGACC 60.564 50.000 6.78 0.00 0.00 3.85
2943 5003 4.284746 AGGGAAAGGCTGCATACTATAGAC 59.715 45.833 6.78 0.00 0.00 2.59
2944 5004 4.493618 AGGGAAAGGCTGCATACTATAGA 58.506 43.478 6.78 0.00 0.00 1.98
2945 5005 4.899352 AGGGAAAGGCTGCATACTATAG 57.101 45.455 0.50 0.00 0.00 1.31
2946 5006 5.152193 TGTAGGGAAAGGCTGCATACTATA 58.848 41.667 0.50 0.00 34.13 1.31
2947 5007 3.973973 TGTAGGGAAAGGCTGCATACTAT 59.026 43.478 0.50 0.00 34.13 2.12
2948 5008 3.380393 TGTAGGGAAAGGCTGCATACTA 58.620 45.455 0.50 0.00 34.13 1.82
2949 5009 2.196595 TGTAGGGAAAGGCTGCATACT 58.803 47.619 0.50 0.00 34.13 2.12
2950 5010 2.683362 GTTGTAGGGAAAGGCTGCATAC 59.317 50.000 0.50 0.00 33.66 2.39
2951 5011 2.679639 CGTTGTAGGGAAAGGCTGCATA 60.680 50.000 0.50 0.00 0.00 3.14
2952 5012 1.839424 GTTGTAGGGAAAGGCTGCAT 58.161 50.000 0.50 0.00 0.00 3.96
2953 5013 0.605319 CGTTGTAGGGAAAGGCTGCA 60.605 55.000 0.50 0.00 0.00 4.41
2954 5014 1.923227 GCGTTGTAGGGAAAGGCTGC 61.923 60.000 0.00 0.00 35.94 5.25
2955 5015 1.305930 GGCGTTGTAGGGAAAGGCTG 61.306 60.000 0.00 0.00 38.24 4.85
2956 5016 1.002502 GGCGTTGTAGGGAAAGGCT 60.003 57.895 0.00 0.00 38.24 4.58
2957 5017 0.608308 AAGGCGTTGTAGGGAAAGGC 60.608 55.000 0.00 0.00 37.62 4.35
2958 5018 1.003233 AGAAGGCGTTGTAGGGAAAGG 59.997 52.381 0.00 0.00 0.00 3.11
2959 5019 2.474410 AGAAGGCGTTGTAGGGAAAG 57.526 50.000 0.00 0.00 0.00 2.62
2960 5020 2.943036 AAGAAGGCGTTGTAGGGAAA 57.057 45.000 0.00 0.00 0.00 3.13
2961 5021 3.557686 GGTTAAGAAGGCGTTGTAGGGAA 60.558 47.826 0.00 0.00 0.00 3.97
2962 5022 2.027837 GGTTAAGAAGGCGTTGTAGGGA 60.028 50.000 0.00 0.00 0.00 4.20
2963 5023 2.289819 TGGTTAAGAAGGCGTTGTAGGG 60.290 50.000 0.00 0.00 0.00 3.53
2964 5024 3.048337 TGGTTAAGAAGGCGTTGTAGG 57.952 47.619 0.00 0.00 0.00 3.18
2965 5025 5.427036 TTTTGGTTAAGAAGGCGTTGTAG 57.573 39.130 0.00 0.00 0.00 2.74
2966 5026 7.690952 ATATTTTGGTTAAGAAGGCGTTGTA 57.309 32.000 0.00 0.00 0.00 2.41
2967 5027 4.929819 ATTTTGGTTAAGAAGGCGTTGT 57.070 36.364 0.00 0.00 0.00 3.32
2968 5028 7.981142 TCTATATTTTGGTTAAGAAGGCGTTG 58.019 34.615 0.00 0.00 0.00 4.10
2969 5029 8.570068 TTCTATATTTTGGTTAAGAAGGCGTT 57.430 30.769 0.00 0.00 0.00 4.84
2970 5030 8.570068 TTTCTATATTTTGGTTAAGAAGGCGT 57.430 30.769 0.00 0.00 0.00 5.68
2992 5052 9.937175 GCACTTGACCTACATTTCTATATTTTC 57.063 33.333 0.00 0.00 0.00 2.29
2993 5053 8.903820 GGCACTTGACCTACATTTCTATATTTT 58.096 33.333 0.00 0.00 0.00 1.82
2994 5054 7.502561 GGGCACTTGACCTACATTTCTATATTT 59.497 37.037 0.00 0.00 41.12 1.40
3059 5131 2.677003 GCGACGATGGTGTGTTGGG 61.677 63.158 0.00 0.00 0.00 4.12
3098 5170 0.260230 TGGTTTTGGGTTCTCTGGCA 59.740 50.000 0.00 0.00 0.00 4.92
3100 5172 2.887152 CTCTTGGTTTTGGGTTCTCTGG 59.113 50.000 0.00 0.00 0.00 3.86
3110 5182 5.965922 AGGTCTTGTTTTCTCTTGGTTTTG 58.034 37.500 0.00 0.00 0.00 2.44
3184 5257 2.362375 TCTTCCATTTGGCGGCCC 60.362 61.111 17.97 0.00 34.44 5.80
3189 5262 1.387539 GCTCCTCTCTTCCATTTGGC 58.612 55.000 0.00 0.00 34.44 4.52
3193 5266 1.142748 CGCGCTCCTCTCTTCCATT 59.857 57.895 5.56 0.00 0.00 3.16
3215 5466 4.003788 CCTCCACGCCGACACCTT 62.004 66.667 0.00 0.00 0.00 3.50
3219 5470 3.998672 GTTCCCTCCACGCCGACA 61.999 66.667 0.00 0.00 0.00 4.35
3257 5508 2.238942 TTCTGTGAGCACATGTCGTT 57.761 45.000 3.49 0.00 41.01 3.85
3274 5525 2.158549 CCAGATCCCCTCCCTTGATTTC 60.159 54.545 0.00 0.00 0.00 2.17
3275 5526 1.855599 CCAGATCCCCTCCCTTGATTT 59.144 52.381 0.00 0.00 0.00 2.17
3279 5530 0.921256 AACCCAGATCCCCTCCCTTG 60.921 60.000 0.00 0.00 0.00 3.61
3329 5581 5.003804 CACAAGCAGTTCAGTTATACCCTT 58.996 41.667 0.00 0.00 0.00 3.95
3330 5582 4.041691 ACACAAGCAGTTCAGTTATACCCT 59.958 41.667 0.00 0.00 0.00 4.34
3360 5612 4.081254 AGAGAAAGAGTATGAGCATGCACA 60.081 41.667 20.21 20.21 0.00 4.57
3417 5673 0.400213 TTGTTCGCAGTCCCCTCAAT 59.600 50.000 0.00 0.00 0.00 2.57
3530 6045 1.901464 GGAAGGACAAGCCGCCAAA 60.901 57.895 0.00 0.00 43.43 3.28
3562 6077 4.103103 CGACTCGACGCAGCCAGA 62.103 66.667 0.00 0.00 0.00 3.86
3579 6094 3.585990 ACAAGCACAGCACCACGC 61.586 61.111 0.00 0.00 42.91 5.34
3580 6095 2.328989 CACAAGCACAGCACCACG 59.671 61.111 0.00 0.00 0.00 4.94
3581 6096 2.026590 GCACAAGCACAGCACCAC 59.973 61.111 0.00 0.00 41.58 4.16
3582 6097 3.585020 CGCACAAGCACAGCACCA 61.585 61.111 0.00 0.00 42.27 4.17
3639 6154 6.460103 AAGCCCATTCACCATATAGAAGAT 57.540 37.500 0.00 0.00 0.00 2.40
3680 6195 2.010582 GCACTCCGGTCTGAGCCTAG 62.011 65.000 0.00 1.78 35.72 3.02
3765 6285 7.435068 GCTCATAAAGAGGTTAAGTTCAACA 57.565 36.000 0.00 0.00 44.86 3.33
3825 6354 5.472137 GCCTGTTAGTATGTTTCCTGTGAAA 59.528 40.000 0.00 0.00 38.14 2.69
3834 6363 4.367039 AGTGTGGCCTGTTAGTATGTTT 57.633 40.909 3.32 0.00 0.00 2.83
3845 6374 1.679977 CCCCATGAAGTGTGGCCTG 60.680 63.158 3.32 0.00 35.35 4.85
3846 6375 2.765969 CCCCATGAAGTGTGGCCT 59.234 61.111 3.32 0.00 35.35 5.19
3858 6387 1.215423 GATGGAGGTAAGTTGCCCCAT 59.785 52.381 23.53 23.53 38.71 4.00
3894 6423 3.730116 TGGAGGATAGCCACCTTCA 57.270 52.632 14.87 0.40 44.49 3.02
3912 6441 1.202770 CCCCAGTCGACAAAAGGAAGT 60.203 52.381 19.50 0.00 0.00 3.01
3941 6470 4.074259 TGATCAACATTTCAGACAGGTGG 58.926 43.478 0.00 0.00 0.00 4.61
4028 6557 7.063593 ACTCTATCTGTATACAGGAAGCAAGA 58.936 38.462 28.33 19.60 43.91 3.02
4276 6849 4.041762 GTGGCCCCGGACCAATCA 62.042 66.667 16.74 0.00 39.39 2.57
4305 6878 0.182775 AAGAAGAACGGTGGCTGGTT 59.817 50.000 0.00 0.00 0.00 3.67
4329 6902 3.786586 AGGCTCGACGACGACGAC 61.787 66.667 17.84 14.03 43.81 4.34
4493 7066 1.521010 CCAGCAGCAGTCCTCATCG 60.521 63.158 0.00 0.00 0.00 3.84
4494 7067 1.818785 GCCAGCAGCAGTCCTCATC 60.819 63.158 0.00 0.00 42.97 2.92
4495 7068 2.271497 GCCAGCAGCAGTCCTCAT 59.729 61.111 0.00 0.00 42.97 2.90
4546 7119 5.932303 ACTATTTATATGTACCTGCGGCTTG 59.068 40.000 0.00 0.00 0.00 4.01
4552 7125 5.577164 CGGCTCACTATTTATATGTACCTGC 59.423 44.000 0.00 0.00 0.00 4.85
4562 7135 5.221263 CCTGAGTACACGGCTCACTATTTAT 60.221 44.000 0.00 0.00 37.98 1.40
4563 7136 4.097437 CCTGAGTACACGGCTCACTATTTA 59.903 45.833 0.00 0.00 37.98 1.40
4564 7137 3.119101 CCTGAGTACACGGCTCACTATTT 60.119 47.826 0.00 0.00 37.98 1.40
4565 7138 2.427453 CCTGAGTACACGGCTCACTATT 59.573 50.000 0.00 0.00 37.98 1.73
4576 7149 2.150397 AAACGAGCACCTGAGTACAC 57.850 50.000 0.00 0.00 0.00 2.90
4671 7244 5.111989 TCATAAGCTTTCTGTGATCGAAGG 58.888 41.667 3.20 0.00 0.00 3.46
4672 7245 6.841443 ATCATAAGCTTTCTGTGATCGAAG 57.159 37.500 3.20 0.00 0.00 3.79
4704 7277 5.164002 GCCTAACAAAACAACACAACAACTG 60.164 40.000 0.00 0.00 0.00 3.16
4705 7278 4.926832 GCCTAACAAAACAACACAACAACT 59.073 37.500 0.00 0.00 0.00 3.16
4710 7283 4.792521 ACAGCCTAACAAAACAACACAA 57.207 36.364 0.00 0.00 0.00 3.33
4715 7288 4.783055 TCACCTACAGCCTAACAAAACAA 58.217 39.130 0.00 0.00 0.00 2.83
4739 7312 2.123640 AACCACACCCCCAAACGG 60.124 61.111 0.00 0.00 0.00 4.44
4741 7314 1.382009 ACCAACCACACCCCCAAAC 60.382 57.895 0.00 0.00 0.00 2.93
4742 7315 1.381872 CACCAACCACACCCCCAAA 60.382 57.895 0.00 0.00 0.00 3.28
4743 7316 2.280416 CACCAACCACACCCCCAA 59.720 61.111 0.00 0.00 0.00 4.12
4744 7317 4.531426 GCACCAACCACACCCCCA 62.531 66.667 0.00 0.00 0.00 4.96
4745 7318 4.218686 AGCACCAACCACACCCCC 62.219 66.667 0.00 0.00 0.00 5.40
4746 7319 2.713531 ATCAGCACCAACCACACCCC 62.714 60.000 0.00 0.00 0.00 4.95
4747 7320 0.037590 TATCAGCACCAACCACACCC 59.962 55.000 0.00 0.00 0.00 4.61
4748 7321 2.128771 ATATCAGCACCAACCACACC 57.871 50.000 0.00 0.00 0.00 4.16
4749 7322 4.236935 CAAAATATCAGCACCAACCACAC 58.763 43.478 0.00 0.00 0.00 3.82
4750 7323 3.257873 CCAAAATATCAGCACCAACCACA 59.742 43.478 0.00 0.00 0.00 4.17
4760 7333 5.473039 AGCAGTGTTTTCCAAAATATCAGC 58.527 37.500 0.00 0.00 0.00 4.26
4791 7366 2.958355 ACCAAACATTTGACAGGGTGAG 59.042 45.455 5.91 0.00 40.55 3.51
4830 7405 2.036217 TCCTTTTCGAACCTAACAGCGA 59.964 45.455 0.00 0.00 0.00 4.93
4835 7410 9.955208 TTAAAAATCTTCCTTTTCGAACCTAAC 57.045 29.630 0.00 0.00 0.00 2.34
4842 7417 9.887406 GTATGTGTTAAAAATCTTCCTTTTCGA 57.113 29.630 0.00 0.00 0.00 3.71
4872 7449 6.893958 CAGAATAAAGTAGAATCTGCACGT 57.106 37.500 0.46 0.00 32.05 4.49
4941 7518 1.890489 TCCAATCAACGGACGAAGAGA 59.110 47.619 0.00 0.00 0.00 3.10
4942 7519 2.363788 TCCAATCAACGGACGAAGAG 57.636 50.000 0.00 0.00 0.00 2.85
4973 7550 3.400255 ACGCACGATCTATGAGCTAGTA 58.600 45.455 0.00 0.00 0.00 1.82
5012 7593 0.107848 AGGGCATACAACAGGTACGC 60.108 55.000 0.00 0.00 40.34 4.42
5062 7643 5.977635 AGTGTAATGAACGGATGAAGATGA 58.022 37.500 0.00 0.00 0.00 2.92
5082 7663 5.317733 GCCCAGAGCACTAGTATATAGTG 57.682 47.826 10.06 10.06 45.62 2.74
5200 7781 9.237846 CTTTTGGTTTCTATCTCTGACAAAAAC 57.762 33.333 0.00 0.00 36.51 2.43
5205 7786 5.620206 TGCTTTTGGTTTCTATCTCTGACA 58.380 37.500 0.00 0.00 0.00 3.58
5208 7789 4.699257 AGCTGCTTTTGGTTTCTATCTCTG 59.301 41.667 0.00 0.00 0.00 3.35
5259 7840 1.852895 GCGTAGTTTCGATCGAGCATT 59.147 47.619 18.54 8.57 0.00 3.56
5270 7851 0.527565 TCCGGGTACTGCGTAGTTTC 59.472 55.000 12.53 5.76 38.36 2.78
5278 7859 1.134491 AGTAATTGCTCCGGGTACTGC 60.134 52.381 0.00 0.00 0.00 4.40
5281 7862 3.322828 TCCATAGTAATTGCTCCGGGTAC 59.677 47.826 0.00 0.00 0.00 3.34
5282 7863 3.578978 TCCATAGTAATTGCTCCGGGTA 58.421 45.455 0.00 0.00 0.00 3.69
5283 7864 2.404559 TCCATAGTAATTGCTCCGGGT 58.595 47.619 0.00 0.00 0.00 5.28
5284 7865 3.139077 GTTCCATAGTAATTGCTCCGGG 58.861 50.000 0.00 0.66 0.00 5.73
5285 7866 3.804036 TGTTCCATAGTAATTGCTCCGG 58.196 45.455 0.00 0.00 0.00 5.14
5287 7868 8.854614 ATCTTATGTTCCATAGTAATTGCTCC 57.145 34.615 0.00 0.00 0.00 4.70
5289 7870 9.632638 ACAATCTTATGTTCCATAGTAATTGCT 57.367 29.630 0.56 0.56 0.00 3.91
5331 7912 7.775093 TGGAGATGCTTTAAGTACAATGCTTAT 59.225 33.333 0.00 0.00 31.66 1.73
5339 7920 5.700832 CAGTGTTGGAGATGCTTTAAGTACA 59.299 40.000 0.00 0.00 0.00 2.90
5347 7928 2.636893 AGAGTCAGTGTTGGAGATGCTT 59.363 45.455 0.00 0.00 0.00 3.91
5348 7929 2.233431 GAGAGTCAGTGTTGGAGATGCT 59.767 50.000 0.00 0.00 0.00 3.79
5355 7936 3.545703 AGGTTTTGAGAGTCAGTGTTGG 58.454 45.455 0.00 0.00 0.00 3.77
5360 7941 1.344763 CGGGAGGTTTTGAGAGTCAGT 59.655 52.381 0.00 0.00 0.00 3.41
5362 7943 0.034896 GCGGGAGGTTTTGAGAGTCA 59.965 55.000 0.00 0.00 0.00 3.41
5366 7947 0.035439 GGATGCGGGAGGTTTTGAGA 60.035 55.000 0.00 0.00 0.00 3.27
5369 7950 1.644786 GACGGATGCGGGAGGTTTTG 61.645 60.000 12.44 0.00 0.00 2.44
5373 7954 3.461773 CAGACGGATGCGGGAGGT 61.462 66.667 12.44 0.00 0.00 3.85
5388 7969 1.208776 TGTCCAGACAGCATGATCCAG 59.791 52.381 0.00 0.00 39.69 3.86
5415 7996 1.378382 CATGCCCACGTTGGATGGA 60.378 57.895 10.41 0.00 40.96 3.41
5427 8008 0.670546 CCACGGATCGATACATGCCC 60.671 60.000 8.69 0.00 0.00 5.36
5428 8009 0.670546 CCCACGGATCGATACATGCC 60.671 60.000 8.69 0.00 0.00 4.40
5431 8012 0.679505 CACCCCACGGATCGATACAT 59.320 55.000 8.69 0.00 0.00 2.29
5439 8020 3.009115 CAGGACCACCCCACGGAT 61.009 66.667 0.00 0.00 36.73 4.18
5477 8058 2.358247 CCCCCACGTTTGTCTCCG 60.358 66.667 0.00 0.00 0.00 4.63
5478 8059 1.302271 GTCCCCCACGTTTGTCTCC 60.302 63.158 0.00 0.00 0.00 3.71
5501 8082 4.593864 GATCGGTCCAGGCTCCGC 62.594 72.222 15.33 2.59 45.44 5.54
5502 8083 4.271816 CGATCGGTCCAGGCTCCG 62.272 72.222 7.38 14.34 46.93 4.63
5507 8088 2.892425 GCTTGCGATCGGTCCAGG 60.892 66.667 18.30 8.05 0.00 4.45
5509 8090 2.954684 AAGGCTTGCGATCGGTCCA 61.955 57.895 18.30 3.25 0.00 4.02
5565 8146 1.737201 GACCAAAAACGTGTGGGGG 59.263 57.895 15.41 4.02 39.39 5.40
5568 8149 1.298788 GCGGACCAAAAACGTGTGG 60.299 57.895 10.75 10.75 41.00 4.17
5569 8150 1.652930 CGCGGACCAAAAACGTGTG 60.653 57.895 0.00 0.00 33.85 3.82
5570 8151 2.710698 CGCGGACCAAAAACGTGT 59.289 55.556 0.00 0.00 33.85 4.49
5571 8152 2.724358 GCGCGGACCAAAAACGTG 60.724 61.111 8.83 0.00 40.69 4.49
5572 8153 3.956317 GGCGCGGACCAAAAACGT 61.956 61.111 8.83 0.00 0.00 3.99
5599 8180 2.549198 ATGAATGCGGGCGCTGATG 61.549 57.895 7.64 0.00 42.51 3.07
5600 8181 2.203252 ATGAATGCGGGCGCTGAT 60.203 55.556 7.64 0.00 42.51 2.90
5602 8183 4.918129 GCATGAATGCGGGCGCTG 62.918 66.667 7.64 0.67 44.67 5.18
5655 8240 3.726517 CTGCACCGGGAAGCAACG 61.727 66.667 17.29 5.55 40.73 4.10
5686 8277 1.369091 GGCCATCGTGTCGCTTGAAT 61.369 55.000 0.00 0.00 0.00 2.57
5708 8299 0.451783 GGCATCAAATGGACGGACAC 59.548 55.000 0.00 0.00 0.00 3.67
5709 8300 0.679640 GGGCATCAAATGGACGGACA 60.680 55.000 0.00 0.00 0.00 4.02
5710 8301 0.679640 TGGGCATCAAATGGACGGAC 60.680 55.000 0.00 0.00 0.00 4.79
5717 8308 4.250464 GGCATCAATATGGGCATCAAATG 58.750 43.478 0.00 0.00 33.38 2.32
5718 8309 3.904965 TGGCATCAATATGGGCATCAAAT 59.095 39.130 0.00 0.00 33.38 2.32
5720 8311 2.629137 GTGGCATCAATATGGGCATCAA 59.371 45.455 0.00 0.00 39.38 2.57
5723 8314 1.250328 CGTGGCATCAATATGGGCAT 58.750 50.000 0.00 0.00 39.38 4.40
5724 8315 0.106769 ACGTGGCATCAATATGGGCA 60.107 50.000 0.00 0.00 33.38 5.36
5727 8318 1.679139 ACCACGTGGCATCAATATGG 58.321 50.000 34.26 6.62 39.32 2.74
5729 8320 1.405105 GCAACCACGTGGCATCAATAT 59.595 47.619 34.26 9.57 39.32 1.28
5730 8321 0.808125 GCAACCACGTGGCATCAATA 59.192 50.000 34.26 0.00 39.32 1.90
5743 8334 4.373116 GAGACGCCTCGGCAACCA 62.373 66.667 8.87 0.00 37.34 3.67
5773 8364 4.227134 CGGCAGAGGGATGGACGG 62.227 72.222 0.00 0.00 0.00 4.79
5774 8365 4.899239 GCGGCAGAGGGATGGACG 62.899 72.222 0.00 0.00 0.00 4.79
5775 8366 4.554036 GGCGGCAGAGGGATGGAC 62.554 72.222 3.07 0.00 0.00 4.02
5778 8369 4.864334 GTGGGCGGCAGAGGGATG 62.864 72.222 12.47 0.00 0.00 3.51
5795 8386 4.298332 GGCACCGATTTTTATAGCAATGG 58.702 43.478 0.00 0.00 0.00 3.16
5833 8424 4.587056 GGATTGGAGGTGGATGGC 57.413 61.111 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.