Multiple sequence alignment - TraesCS3A01G163700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G163700 chr3A 100.000 4764 0 0 1 4764 166931426 166926663 0.000000e+00 8798.0
1 TraesCS3A01G163700 chr3A 100.000 1700 0 0 5195 6894 166926232 166924533 0.000000e+00 3140.0
2 TraesCS3A01G163700 chr3A 88.175 871 85 5 2350 3219 181135567 181134714 0.000000e+00 1022.0
3 TraesCS3A01G163700 chr3A 93.750 464 23 3 5663 6123 181107798 181107338 0.000000e+00 691.0
4 TraesCS3A01G163700 chr3A 86.349 630 64 7 3394 4012 181110045 181109427 0.000000e+00 667.0
5 TraesCS3A01G163700 chr3A 87.435 382 37 6 2790 3162 177893695 177893316 4.940000e-116 429.0
6 TraesCS3A01G163700 chr3A 93.491 169 10 1 3217 3385 181110389 181110222 4.130000e-62 250.0
7 TraesCS3A01G163700 chr3A 93.651 63 4 0 3179 3241 177889409 177889347 2.050000e-15 95.3
8 TraesCS3A01G163700 chr3A 88.333 60 5 2 6678 6736 166924719 166924661 3.450000e-08 71.3
9 TraesCS3A01G163700 chr3A 88.333 60 5 2 6708 6766 166924749 166924691 3.450000e-08 71.3
10 TraesCS3A01G163700 chr3A 100.000 31 0 0 3165 3195 177889449 177889419 2.690000e-04 58.4
11 TraesCS3A01G163700 chr3D 96.347 4271 133 14 432 4693 149551407 149547151 0.000000e+00 7001.0
12 TraesCS3A01G163700 chr3D 91.796 1548 77 20 5195 6736 149546983 149545480 0.000000e+00 2109.0
13 TraesCS3A01G163700 chr3D 89.768 1036 103 1 2350 3385 149763592 149764624 0.000000e+00 1323.0
14 TraesCS3A01G163700 chr3D 94.433 467 21 2 5660 6123 149767059 149767523 0.000000e+00 713.0
15 TraesCS3A01G163700 chr3D 86.825 630 63 9 3394 4012 149764801 149765421 0.000000e+00 686.0
16 TraesCS3A01G163700 chr3D 86.371 587 49 9 3298 3874 149234478 149233913 4.570000e-171 612.0
17 TraesCS3A01G163700 chr3D 86.031 587 51 5 3298 3874 147325099 147325664 9.890000e-168 601.0
18 TraesCS3A01G163700 chr3D 84.381 557 52 7 3321 3867 149208005 149207474 1.330000e-141 514.0
19 TraesCS3A01G163700 chr3D 83.303 557 58 9 3321 3867 147332805 147333336 1.340000e-131 481.0
20 TraesCS3A01G163700 chr3D 88.267 375 40 3 2790 3162 152696507 152696879 4.910000e-121 446.0
21 TraesCS3A01G163700 chr3D 86.170 376 34 11 5751 6123 149207364 149207004 2.330000e-104 390.0
22 TraesCS3A01G163700 chr3D 81.765 340 30 9 3 328 13747167 13747488 8.870000e-64 255.0
23 TraesCS3A01G163700 chr3D 83.274 281 42 3 2037 2317 149763320 149763595 3.190000e-63 254.0
24 TraesCS3A01G163700 chr3D 90.957 188 8 2 6708 6894 149545539 149545360 1.920000e-60 244.0
25 TraesCS3A01G163700 chr3D 95.082 61 3 0 3178 3238 152701116 152701176 5.690000e-16 97.1
26 TraesCS3A01G163700 chr3D 84.694 98 6 6 3916 4012 147333337 147333426 9.520000e-14 89.8
27 TraesCS3A01G163700 chr3D 82.653 98 8 6 3916 4012 149207473 149207384 2.060000e-10 78.7
28 TraesCS3A01G163700 chr3B 96.946 2914 74 6 520 3423 221987719 221984811 0.000000e+00 4874.0
29 TraesCS3A01G163700 chr3B 92.458 1432 73 17 5197 6593 221982958 221981527 0.000000e+00 2013.0
30 TraesCS3A01G163700 chr3B 94.340 848 40 6 5195 6039 221468706 221467864 0.000000e+00 1293.0
31 TraesCS3A01G163700 chr3B 90.988 921 55 14 5700 6593 221914962 221914043 0.000000e+00 1216.0
32 TraesCS3A01G163700 chr3B 97.202 679 15 2 3416 4091 221984766 221984089 0.000000e+00 1146.0
33 TraesCS3A01G163700 chr3B 89.239 920 69 15 5700 6594 215387702 215386788 0.000000e+00 1123.0
34 TraesCS3A01G163700 chr3B 94.159 565 29 1 5700 6264 215116175 215115615 0.000000e+00 857.0
35 TraesCS3A01G163700 chr3B 94.004 567 31 3 5700 6264 221753622 221753057 0.000000e+00 856.0
36 TraesCS3A01G163700 chr3B 92.208 539 35 1 4159 4697 221983898 221983367 0.000000e+00 756.0
37 TraesCS3A01G163700 chr3B 92.153 497 29 6 3966 4454 221469290 221468796 0.000000e+00 693.0
38 TraesCS3A01G163700 chr3B 85.235 596 70 11 2875 3461 469633136 469632550 1.280000e-166 597.0
39 TraesCS3A01G163700 chr3B 90.000 450 41 4 6286 6732 215115556 215115108 4.640000e-161 579.0
40 TraesCS3A01G163700 chr3B 85.817 557 44 16 6063 6594 221467871 221467325 6.040000e-155 558.0
41 TraesCS3A01G163700 chr3B 83.976 493 51 10 3384 3874 215589080 215588614 1.360000e-121 448.0
42 TraesCS3A01G163700 chr3B 87.147 389 28 8 6361 6744 221750790 221750419 8.270000e-114 422.0
43 TraesCS3A01G163700 chr3B 86.253 371 37 6 2790 3155 223525936 223526297 2.330000e-104 390.0
44 TraesCS3A01G163700 chr3B 89.474 190 9 4 6708 6894 221750490 221750309 5.380000e-56 230.0
45 TraesCS3A01G163700 chr3B 88.421 190 8 5 6708 6894 215115165 215114987 4.190000e-52 217.0
46 TraesCS3A01G163700 chr3B 92.453 106 8 0 6262 6367 221752954 221752849 1.200000e-32 152.0
47 TraesCS3A01G163700 chr3B 95.402 87 4 0 3299 3385 215589327 215589241 9.320000e-29 139.0
48 TraesCS3A01G163700 chr3B 98.462 65 1 0 6830 6894 221466974 221466910 1.570000e-21 115.0
49 TraesCS3A01G163700 chr3B 98.462 65 1 0 6830 6894 221913611 221913547 1.570000e-21 115.0
50 TraesCS3A01G163700 chr3B 98.462 65 1 0 6830 6894 221981081 221981017 1.570000e-21 115.0
51 TraesCS3A01G163700 chr3B 87.356 87 9 1 4676 4760 221983353 221983267 1.580000e-16 99.0
52 TraesCS3A01G163700 chr3B 98.182 55 1 0 6840 6894 215573230 215573176 5.690000e-16 97.1
53 TraesCS3A01G163700 chr3B 95.082 61 3 0 3178 3238 223557456 223557516 5.690000e-16 97.1
54 TraesCS3A01G163700 chr3B 100.000 35 0 0 6830 6864 215314405 215314371 1.600000e-06 65.8
55 TraesCS3A01G163700 chr3B 100.000 30 0 0 4734 4763 221468801 221468772 1.000000e-03 56.5
56 TraesCS3A01G163700 chrUn 82.670 427 37 16 3 400 143922784 143922366 1.840000e-90 344.0
57 TraesCS3A01G163700 chrUn 87.544 281 28 3 3 281 260712460 260712185 1.120000e-82 318.0
58 TraesCS3A01G163700 chrUn 87.544 281 25 6 2 281 21370512 21370241 4.010000e-82 316.0
59 TraesCS3A01G163700 chrUn 85.882 85 7 2 4014 4093 79949234 79949150 1.230000e-12 86.1
60 TraesCS3A01G163700 chr2D 82.775 418 39 12 3 392 97277827 97278239 6.620000e-90 342.0
61 TraesCS3A01G163700 chr2D 82.660 421 33 20 2 392 595389490 595389900 3.080000e-88 337.0
62 TraesCS3A01G163700 chr5D 89.434 265 20 4 19 281 37640751 37640493 1.850000e-85 327.0
63 TraesCS3A01G163700 chr5D 81.710 421 45 15 1 392 9104811 9104394 8.630000e-84 322.0
64 TraesCS3A01G163700 chr4A 87.589 282 26 4 1 281 647184219 647184492 1.120000e-82 318.0
65 TraesCS3A01G163700 chr4D 87.544 281 24 7 2 281 134664836 134664566 1.440000e-81 315.0
66 TraesCS3A01G163700 chr4D 79.808 312 15 15 26 322 77291031 77291309 4.250000e-42 183.0
67 TraesCS3A01G163700 chr7B 80.208 384 37 12 38 392 6216573 6216946 1.150000e-62 252.0
68 TraesCS3A01G163700 chr7B 78.370 319 33 12 20 322 750090966 750091264 2.560000e-39 174.0
69 TraesCS3A01G163700 chr2A 83.824 272 30 7 2 269 81104779 81105040 5.340000e-61 246.0
70 TraesCS3A01G163700 chr2A 100.000 29 0 0 4154 4182 12576278 12576250 3.000000e-03 54.7
71 TraesCS3A01G163700 chr4B 79.733 375 38 12 20 373 81366327 81366684 3.210000e-58 237.0
72 TraesCS3A01G163700 chr7D 79.003 381 33 10 21 373 554409639 554409278 4.190000e-52 217.0
73 TraesCS3A01G163700 chr1B 79.351 339 31 15 4 322 633532419 633532738 1.170000e-47 202.0
74 TraesCS3A01G163700 chr6A 83.529 85 8 3 4014 4093 7167091 7167174 2.670000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G163700 chr3A 166924533 166931426 6893 True 3020.150000 8798 94.166500 1 6894 4 chr3A.!!$R2 6893
1 TraesCS3A01G163700 chr3A 181134714 181135567 853 True 1022.000000 1022 88.175000 2350 3219 1 chr3A.!!$R1 869
2 TraesCS3A01G163700 chr3A 181107338 181110389 3051 True 536.000000 691 91.196667 3217 6123 3 chr3A.!!$R4 2906
3 TraesCS3A01G163700 chr3D 149545360 149551407 6047 True 3118.000000 7001 93.033333 432 6894 3 chr3D.!!$R3 6462
4 TraesCS3A01G163700 chr3D 149763320 149767523 4203 False 744.000000 1323 88.575000 2037 6123 4 chr3D.!!$F6 4086
5 TraesCS3A01G163700 chr3D 149233913 149234478 565 True 612.000000 612 86.371000 3298 3874 1 chr3D.!!$R1 576
6 TraesCS3A01G163700 chr3D 147325099 147325664 565 False 601.000000 601 86.031000 3298 3874 1 chr3D.!!$F2 576
7 TraesCS3A01G163700 chr3D 149207004 149208005 1001 True 327.566667 514 84.401333 3321 6123 3 chr3D.!!$R2 2802
8 TraesCS3A01G163700 chr3D 147332805 147333426 621 False 285.400000 481 83.998500 3321 4012 2 chr3D.!!$F5 691
9 TraesCS3A01G163700 chr3B 221981017 221987719 6702 True 1500.500000 4874 94.105333 520 6894 6 chr3B.!!$R10 6374
10 TraesCS3A01G163700 chr3B 215386788 215387702 914 True 1123.000000 1123 89.239000 5700 6594 1 chr3B.!!$R2 894
11 TraesCS3A01G163700 chr3B 221913547 221914962 1415 True 665.500000 1216 94.725000 5700 6894 2 chr3B.!!$R9 1194
12 TraesCS3A01G163700 chr3B 469632550 469633136 586 True 597.000000 597 85.235000 2875 3461 1 chr3B.!!$R4 586
13 TraesCS3A01G163700 chr3B 215114987 215116175 1188 True 551.000000 857 90.860000 5700 6894 3 chr3B.!!$R5 1194
14 TraesCS3A01G163700 chr3B 221466910 221469290 2380 True 543.100000 1293 94.154400 3966 6894 5 chr3B.!!$R7 2928
15 TraesCS3A01G163700 chr3B 221750309 221753622 3313 True 415.000000 856 90.769500 5700 6894 4 chr3B.!!$R8 1194
16 TraesCS3A01G163700 chr3B 215588614 215589327 713 True 293.500000 448 89.689000 3299 3874 2 chr3B.!!$R6 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.036306 GTGCCTCTTTCGGAAAGGGA 59.964 55.0 27.71 14.21 41.66 4.20 F
328 329 0.158096 GTTACGACAAGTGACGTGCG 59.842 55.0 16.92 11.81 44.93 5.34 F
423 424 0.250684 TTTTCTCCATGTGGCGCTCA 60.251 50.0 7.64 7.90 34.44 4.26 F
424 425 0.955428 TTTCTCCATGTGGCGCTCAC 60.955 55.0 18.49 18.49 46.23 3.51 F
2397 2410 0.593128 AACACGACAAGAGCAATGCC 59.407 50.0 0.00 0.00 0.00 4.40 F
2998 3015 0.818445 CAGGCTGGAGCAAGCTATGG 60.818 60.0 6.61 0.00 43.06 2.74 F
4257 4659 0.166597 CATGTTGACGTTGCGCTCAT 59.833 50.0 9.73 0.00 0.00 2.90 F
4471 4873 0.179004 CGGTTGCCATGCCCCTAATA 60.179 55.0 0.00 0.00 0.00 0.98 F
5252 5767 0.464452 GGGGTGGTCGTAGAATGAGG 59.536 60.0 0.00 0.00 39.69 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1432 1445 0.114954 AGGCTGGGATTTGAAGGCAA 59.885 50.000 0.00 0.00 38.87 4.52 R
2200 2213 2.688364 AGCAGTTTTCGCTTTAGTGC 57.312 45.000 0.00 0.00 35.82 4.40 R
2397 2410 6.956202 ATTGGCTGGATTTCAGAATCTAAG 57.044 37.500 0.00 0.46 46.18 2.18 R
2417 2430 9.817365 GATTATTAGTAGCAGCACAATGTATTG 57.183 33.333 0.00 3.17 43.26 1.90 R
4135 4418 0.382873 GGGTTCAACGTGGTCAAACC 59.617 55.000 3.87 3.87 38.90 3.27 R
4702 5180 0.165944 CGCGCACAAAAACTCTAGGG 59.834 55.000 8.75 0.00 0.00 3.53 R
5232 5747 1.191535 CTCATTCTACGACCACCCCA 58.808 55.000 0.00 0.00 0.00 4.96 R
5406 6174 1.829222 CAGCTCCTTTGCCATGGAAAT 59.171 47.619 18.40 0.00 31.23 2.17 R
6624 10253 1.092921 AACGGTTCGCTTGCAAGTGA 61.093 50.000 33.20 33.20 43.26 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.440234 GTGTTTTCTCTTTCTTCCCCTTC 57.560 43.478 0.00 0.00 0.00 3.46
23 24 4.278669 GTGTTTTCTCTTTCTTCCCCTTCC 59.721 45.833 0.00 0.00 0.00 3.46
24 25 3.418684 TTTCTCTTTCTTCCCCTTCCG 57.581 47.619 0.00 0.00 0.00 4.30
25 26 0.613777 TCTCTTTCTTCCCCTTCCGC 59.386 55.000 0.00 0.00 0.00 5.54
26 27 0.741221 CTCTTTCTTCCCCTTCCGCG 60.741 60.000 0.00 0.00 0.00 6.46
27 28 1.189524 TCTTTCTTCCCCTTCCGCGA 61.190 55.000 8.23 0.00 0.00 5.87
28 29 0.741221 CTTTCTTCCCCTTCCGCGAG 60.741 60.000 8.23 0.00 0.00 5.03
29 30 1.189524 TTTCTTCCCCTTCCGCGAGA 61.190 55.000 8.23 0.00 0.00 4.04
30 31 1.605058 TTCTTCCCCTTCCGCGAGAG 61.605 60.000 8.23 4.45 0.00 3.20
31 32 2.283676 TTCCCCTTCCGCGAGAGT 60.284 61.111 8.23 0.00 0.00 3.24
32 33 2.286127 CTTCCCCTTCCGCGAGAGTC 62.286 65.000 8.23 0.00 0.00 3.36
33 34 3.068691 CCCCTTCCGCGAGAGTCA 61.069 66.667 8.23 0.00 0.00 3.41
34 35 2.182030 CCCTTCCGCGAGAGTCAC 59.818 66.667 8.23 0.00 0.00 3.67
35 36 2.636412 CCCTTCCGCGAGAGTCACA 61.636 63.158 8.23 0.00 0.00 3.58
36 37 1.153939 CCTTCCGCGAGAGTCACAG 60.154 63.158 8.23 0.00 0.00 3.66
37 38 1.581954 CTTCCGCGAGAGTCACAGT 59.418 57.895 8.23 0.00 0.00 3.55
38 39 0.039074 CTTCCGCGAGAGTCACAGTT 60.039 55.000 8.23 0.00 0.00 3.16
39 40 0.387929 TTCCGCGAGAGTCACAGTTT 59.612 50.000 8.23 0.00 0.00 2.66
40 41 0.387929 TCCGCGAGAGTCACAGTTTT 59.612 50.000 8.23 0.00 0.00 2.43
41 42 1.202486 TCCGCGAGAGTCACAGTTTTT 60.202 47.619 8.23 0.00 0.00 1.94
42 43 1.192534 CCGCGAGAGTCACAGTTTTTC 59.807 52.381 8.23 0.00 0.00 2.29
43 44 2.128035 CGCGAGAGTCACAGTTTTTCT 58.872 47.619 0.00 0.00 0.00 2.52
44 45 2.540101 CGCGAGAGTCACAGTTTTTCTT 59.460 45.455 0.00 0.00 0.00 2.52
45 46 3.001330 CGCGAGAGTCACAGTTTTTCTTT 59.999 43.478 0.00 0.00 0.00 2.52
46 47 4.519147 GCGAGAGTCACAGTTTTTCTTTC 58.481 43.478 0.00 0.00 0.00 2.62
47 48 4.034048 GCGAGAGTCACAGTTTTTCTTTCA 59.966 41.667 0.00 0.00 0.00 2.69
48 49 5.493735 CGAGAGTCACAGTTTTTCTTTCAC 58.506 41.667 0.00 0.00 0.00 3.18
49 50 5.470845 AGAGTCACAGTTTTTCTTTCACG 57.529 39.130 0.00 0.00 0.00 4.35
50 51 5.175859 AGAGTCACAGTTTTTCTTTCACGA 58.824 37.500 0.00 0.00 0.00 4.35
51 52 5.292101 AGAGTCACAGTTTTTCTTTCACGAG 59.708 40.000 0.00 0.00 0.00 4.18
52 53 5.175859 AGTCACAGTTTTTCTTTCACGAGA 58.824 37.500 0.00 0.00 0.00 4.04
53 54 5.292101 AGTCACAGTTTTTCTTTCACGAGAG 59.708 40.000 0.00 0.00 0.00 3.20
54 55 4.570772 TCACAGTTTTTCTTTCACGAGAGG 59.429 41.667 0.00 0.00 0.00 3.69
55 56 3.312697 ACAGTTTTTCTTTCACGAGAGGC 59.687 43.478 0.00 0.00 0.00 4.70
56 57 3.312421 CAGTTTTTCTTTCACGAGAGGCA 59.688 43.478 0.00 0.00 0.00 4.75
57 58 3.312697 AGTTTTTCTTTCACGAGAGGCAC 59.687 43.478 0.00 0.00 0.00 5.01
58 59 1.497991 TTTCTTTCACGAGAGGCACG 58.502 50.000 0.00 0.00 0.00 5.34
59 60 0.319555 TTCTTTCACGAGAGGCACGG 60.320 55.000 0.00 0.00 34.93 4.94
60 61 1.006102 CTTTCACGAGAGGCACGGT 60.006 57.895 0.00 0.00 34.93 4.83
61 62 0.600255 CTTTCACGAGAGGCACGGTT 60.600 55.000 0.00 0.00 34.93 4.44
62 63 0.878523 TTTCACGAGAGGCACGGTTG 60.879 55.000 0.00 0.00 34.93 3.77
63 64 2.023414 TTCACGAGAGGCACGGTTGT 62.023 55.000 0.00 0.00 34.93 3.32
75 76 2.519377 ACGGTTGTGATTTCGTGAGA 57.481 45.000 0.00 0.00 34.40 3.27
76 77 2.404215 ACGGTTGTGATTTCGTGAGAG 58.596 47.619 0.00 0.00 43.69 3.20
77 78 1.726791 CGGTTGTGATTTCGTGAGAGG 59.273 52.381 0.00 0.00 43.69 3.69
78 79 1.464997 GGTTGTGATTTCGTGAGAGGC 59.535 52.381 0.00 0.00 43.69 4.70
79 80 2.143122 GTTGTGATTTCGTGAGAGGCA 58.857 47.619 0.00 0.00 43.69 4.75
80 81 1.795768 TGTGATTTCGTGAGAGGCAC 58.204 50.000 0.00 0.00 43.69 5.01
95 96 3.655481 CACGGGTGTGCCTCTTTC 58.345 61.111 0.00 0.00 39.67 2.62
96 97 2.030562 ACGGGTGTGCCTCTTTCG 59.969 61.111 0.00 0.00 34.45 3.46
97 98 2.742372 CGGGTGTGCCTCTTTCGG 60.742 66.667 0.00 0.00 34.45 4.30
98 99 2.747686 GGGTGTGCCTCTTTCGGA 59.252 61.111 0.00 0.00 34.45 4.55
99 100 1.072505 GGGTGTGCCTCTTTCGGAA 59.927 57.895 0.00 0.00 34.45 4.30
100 101 0.536460 GGGTGTGCCTCTTTCGGAAA 60.536 55.000 2.78 2.78 34.45 3.13
101 102 0.875059 GGTGTGCCTCTTTCGGAAAG 59.125 55.000 21.64 21.64 39.88 2.62
102 103 0.875059 GTGTGCCTCTTTCGGAAAGG 59.125 55.000 25.66 15.57 39.01 3.11
103 104 0.250727 TGTGCCTCTTTCGGAAAGGG 60.251 55.000 25.66 23.41 38.75 3.95
104 105 0.036306 GTGCCTCTTTCGGAAAGGGA 59.964 55.000 27.71 14.21 41.66 4.20
105 106 0.768622 TGCCTCTTTCGGAAAGGGAA 59.231 50.000 27.71 19.29 41.66 3.97
106 107 1.144093 TGCCTCTTTCGGAAAGGGAAA 59.856 47.619 27.71 14.52 41.66 3.13
107 108 2.235891 GCCTCTTTCGGAAAGGGAAAA 58.764 47.619 27.71 9.72 41.66 2.29
108 109 2.626266 GCCTCTTTCGGAAAGGGAAAAA 59.374 45.455 27.71 9.07 41.66 1.94
109 110 3.305403 GCCTCTTTCGGAAAGGGAAAAAG 60.305 47.826 27.71 16.71 41.66 2.27
110 111 3.889538 CCTCTTTCGGAAAGGGAAAAAGT 59.110 43.478 27.71 0.00 41.66 2.66
111 112 4.023107 CCTCTTTCGGAAAGGGAAAAAGTC 60.023 45.833 27.71 0.00 41.66 3.01
112 113 4.023107 CTCTTTCGGAAAGGGAAAAAGTCC 60.023 45.833 22.99 0.00 41.66 3.85
120 121 2.254471 GGAAAAAGTCCGTGCTCCC 58.746 57.895 0.00 0.00 36.40 4.30
121 122 1.574702 GGAAAAAGTCCGTGCTCCCG 61.575 60.000 0.00 0.00 36.40 5.14
128 129 4.003788 CCGTGCTCCCGGTTCAGT 62.004 66.667 0.00 0.00 43.07 3.41
129 130 2.030562 CGTGCTCCCGGTTCAGTT 59.969 61.111 0.00 0.00 0.00 3.16
130 131 1.597027 CGTGCTCCCGGTTCAGTTT 60.597 57.895 0.00 0.00 0.00 2.66
131 132 1.164041 CGTGCTCCCGGTTCAGTTTT 61.164 55.000 0.00 0.00 0.00 2.43
132 133 1.029681 GTGCTCCCGGTTCAGTTTTT 58.970 50.000 0.00 0.00 0.00 1.94
189 190 6.385649 AAAAAGCTCGTCAAAACCTATCAA 57.614 33.333 0.00 0.00 0.00 2.57
190 191 5.358298 AAAGCTCGTCAAAACCTATCAAC 57.642 39.130 0.00 0.00 0.00 3.18
191 192 4.002906 AGCTCGTCAAAACCTATCAACA 57.997 40.909 0.00 0.00 0.00 3.33
192 193 4.579869 AGCTCGTCAAAACCTATCAACAT 58.420 39.130 0.00 0.00 0.00 2.71
193 194 4.393062 AGCTCGTCAAAACCTATCAACATG 59.607 41.667 0.00 0.00 0.00 3.21
194 195 4.437390 GCTCGTCAAAACCTATCAACATGG 60.437 45.833 0.00 0.00 0.00 3.66
195 196 4.006989 TCGTCAAAACCTATCAACATGGG 58.993 43.478 0.00 0.00 36.68 4.00
196 197 4.006989 CGTCAAAACCTATCAACATGGGA 58.993 43.478 0.00 0.00 34.16 4.37
197 198 4.640201 CGTCAAAACCTATCAACATGGGAT 59.360 41.667 0.00 2.37 34.16 3.85
198 199 5.220854 CGTCAAAACCTATCAACATGGGATC 60.221 44.000 5.52 0.00 34.16 3.36
199 200 5.888161 GTCAAAACCTATCAACATGGGATCT 59.112 40.000 5.52 0.00 34.16 2.75
200 201 7.054124 GTCAAAACCTATCAACATGGGATCTA 58.946 38.462 5.52 0.00 34.16 1.98
201 202 7.227512 GTCAAAACCTATCAACATGGGATCTAG 59.772 40.741 5.52 0.40 34.16 2.43
202 203 6.831664 AAACCTATCAACATGGGATCTAGT 57.168 37.500 5.52 0.98 34.16 2.57
203 204 6.831664 AACCTATCAACATGGGATCTAGTT 57.168 37.500 5.52 5.97 34.16 2.24
204 205 6.831664 ACCTATCAACATGGGATCTAGTTT 57.168 37.500 5.52 0.00 34.16 2.66
205 206 7.213178 ACCTATCAACATGGGATCTAGTTTT 57.787 36.000 5.52 0.00 34.16 2.43
206 207 8.331931 ACCTATCAACATGGGATCTAGTTTTA 57.668 34.615 5.52 0.00 34.16 1.52
207 208 8.778059 ACCTATCAACATGGGATCTAGTTTTAA 58.222 33.333 5.52 0.00 34.16 1.52
208 209 9.627123 CCTATCAACATGGGATCTAGTTTTAAA 57.373 33.333 5.52 0.00 32.06 1.52
211 212 9.927081 ATCAACATGGGATCTAGTTTTAAAGAT 57.073 29.630 0.00 0.00 35.15 2.40
212 213 9.396022 TCAACATGGGATCTAGTTTTAAAGATC 57.604 33.333 0.00 6.39 44.88 2.75
213 214 9.401058 CAACATGGGATCTAGTTTTAAAGATCT 57.599 33.333 12.45 0.00 44.94 2.75
214 215 9.620259 AACATGGGATCTAGTTTTAAAGATCTC 57.380 33.333 12.45 10.10 45.96 2.75
218 219 8.132604 GGGATCTAGTTTTAAAGATCTCAACG 57.867 38.462 12.45 0.00 45.36 4.10
219 220 7.254488 GGGATCTAGTTTTAAAGATCTCAACGC 60.254 40.741 12.45 0.00 45.36 4.84
220 221 6.627690 TCTAGTTTTAAAGATCTCAACGCG 57.372 37.500 3.53 3.53 0.00 6.01
221 222 6.384224 TCTAGTTTTAAAGATCTCAACGCGA 58.616 36.000 15.93 0.00 0.00 5.87
222 223 5.265407 AGTTTTAAAGATCTCAACGCGAC 57.735 39.130 15.93 0.00 0.00 5.19
223 224 3.965209 TTTAAAGATCTCAACGCGACG 57.035 42.857 15.93 2.43 0.00 5.12
224 225 1.265568 TAAAGATCTCAACGCGACGC 58.734 50.000 15.93 10.49 0.00 5.19
235 236 2.508439 GCGACGCGAGGAATCCAA 60.508 61.111 15.93 0.00 0.00 3.53
236 237 2.799540 GCGACGCGAGGAATCCAAC 61.800 63.158 15.93 0.00 0.00 3.77
237 238 2.505498 CGACGCGAGGAATCCAACG 61.505 63.158 15.93 12.84 0.00 4.10
238 239 2.125673 ACGCGAGGAATCCAACGG 60.126 61.111 15.93 11.24 0.00 4.44
239 240 2.125673 CGCGAGGAATCCAACGGT 60.126 61.111 17.17 0.00 0.00 4.83
240 241 2.452813 CGCGAGGAATCCAACGGTG 61.453 63.158 17.17 0.00 0.00 4.94
241 242 1.079405 GCGAGGAATCCAACGGTGA 60.079 57.895 17.17 0.00 0.00 4.02
242 243 0.672401 GCGAGGAATCCAACGGTGAA 60.672 55.000 17.17 0.00 0.00 3.18
243 244 1.803334 CGAGGAATCCAACGGTGAAA 58.197 50.000 0.00 0.00 0.00 2.69
244 245 1.732259 CGAGGAATCCAACGGTGAAAG 59.268 52.381 0.00 0.00 0.00 2.62
245 246 1.468914 GAGGAATCCAACGGTGAAAGC 59.531 52.381 0.00 0.00 0.00 3.51
255 256 3.669354 GGTGAAAGCGGATCGAGAT 57.331 52.632 0.00 0.00 0.00 2.75
256 257 1.941325 GGTGAAAGCGGATCGAGATT 58.059 50.000 0.00 0.00 0.00 2.40
257 258 2.280628 GGTGAAAGCGGATCGAGATTT 58.719 47.619 3.26 3.26 0.00 2.17
258 259 2.030946 GGTGAAAGCGGATCGAGATTTG 59.969 50.000 7.60 0.00 0.00 2.32
259 260 2.030946 GTGAAAGCGGATCGAGATTTGG 59.969 50.000 7.60 0.00 0.00 3.28
260 261 2.093711 TGAAAGCGGATCGAGATTTGGA 60.094 45.455 7.60 0.00 0.00 3.53
261 262 1.941325 AAGCGGATCGAGATTTGGAC 58.059 50.000 0.00 0.00 0.00 4.02
262 263 0.249073 AGCGGATCGAGATTTGGACG 60.249 55.000 0.00 0.00 0.00 4.79
263 264 1.822250 GCGGATCGAGATTTGGACGC 61.822 60.000 0.00 0.00 38.94 5.19
264 265 0.527600 CGGATCGAGATTTGGACGCA 60.528 55.000 0.00 0.00 0.00 5.24
265 266 0.931005 GGATCGAGATTTGGACGCAC 59.069 55.000 0.00 0.00 0.00 5.34
266 267 0.572590 GATCGAGATTTGGACGCACG 59.427 55.000 0.00 0.00 0.00 5.34
267 268 0.806102 ATCGAGATTTGGACGCACGG 60.806 55.000 0.00 0.00 0.00 4.94
268 269 1.736645 CGAGATTTGGACGCACGGT 60.737 57.895 0.00 0.00 0.00 4.83
269 270 1.289109 CGAGATTTGGACGCACGGTT 61.289 55.000 0.00 0.00 0.00 4.44
270 271 0.872388 GAGATTTGGACGCACGGTTT 59.128 50.000 0.00 0.00 0.00 3.27
271 272 0.591170 AGATTTGGACGCACGGTTTG 59.409 50.000 0.00 0.00 0.00 2.93
272 273 0.589223 GATTTGGACGCACGGTTTGA 59.411 50.000 0.00 0.00 0.00 2.69
273 274 0.591170 ATTTGGACGCACGGTTTGAG 59.409 50.000 0.00 0.00 0.00 3.02
274 275 0.462225 TTTGGACGCACGGTTTGAGA 60.462 50.000 0.00 0.00 0.00 3.27
275 276 0.462225 TTGGACGCACGGTTTGAGAA 60.462 50.000 0.00 0.00 0.00 2.87
276 277 0.462225 TGGACGCACGGTTTGAGAAA 60.462 50.000 0.00 0.00 0.00 2.52
277 278 0.872388 GGACGCACGGTTTGAGAAAT 59.128 50.000 0.00 0.00 0.00 2.17
278 279 2.070783 GGACGCACGGTTTGAGAAATA 58.929 47.619 0.00 0.00 0.00 1.40
279 280 2.481185 GGACGCACGGTTTGAGAAATAA 59.519 45.455 0.00 0.00 0.00 1.40
280 281 3.058777 GGACGCACGGTTTGAGAAATAAA 60.059 43.478 0.00 0.00 0.00 1.40
281 282 3.880610 ACGCACGGTTTGAGAAATAAAC 58.119 40.909 0.00 0.00 37.31 2.01
282 283 2.900046 CGCACGGTTTGAGAAATAAACG 59.100 45.455 0.00 0.00 38.57 3.60
283 284 3.363182 CGCACGGTTTGAGAAATAAACGA 60.363 43.478 0.00 0.00 38.57 3.85
284 285 4.529446 GCACGGTTTGAGAAATAAACGAA 58.471 39.130 0.00 0.00 38.57 3.85
285 286 5.151389 GCACGGTTTGAGAAATAAACGAAT 58.849 37.500 0.00 0.00 38.57 3.34
286 287 5.283012 GCACGGTTTGAGAAATAAACGAATC 59.717 40.000 0.00 0.00 38.57 2.52
287 288 6.599437 CACGGTTTGAGAAATAAACGAATCT 58.401 36.000 0.00 0.00 38.57 2.40
288 289 7.622672 GCACGGTTTGAGAAATAAACGAATCTA 60.623 37.037 0.00 0.00 38.57 1.98
289 290 8.388103 CACGGTTTGAGAAATAAACGAATCTAT 58.612 33.333 0.00 0.00 38.57 1.98
290 291 8.388103 ACGGTTTGAGAAATAAACGAATCTATG 58.612 33.333 0.00 0.00 38.57 2.23
291 292 8.600625 CGGTTTGAGAAATAAACGAATCTATGA 58.399 33.333 0.00 0.00 38.57 2.15
304 305 9.678941 AAACGAATCTATGAAAAAGGAAAACTC 57.321 29.630 0.00 0.00 0.00 3.01
305 306 7.817641 ACGAATCTATGAAAAAGGAAAACTCC 58.182 34.615 0.00 0.00 0.00 3.85
306 307 7.094334 ACGAATCTATGAAAAAGGAAAACTCCC 60.094 37.037 0.00 0.00 0.00 4.30
307 308 7.094377 CGAATCTATGAAAAAGGAAAACTCCCA 60.094 37.037 0.00 0.00 0.00 4.37
308 309 7.709149 ATCTATGAAAAAGGAAAACTCCCAG 57.291 36.000 0.00 0.00 0.00 4.45
309 310 6.010219 TCTATGAAAAAGGAAAACTCCCAGG 58.990 40.000 0.00 0.00 0.00 4.45
310 311 3.989056 TGAAAAAGGAAAACTCCCAGGT 58.011 40.909 0.00 0.00 0.00 4.00
311 312 4.358214 TGAAAAAGGAAAACTCCCAGGTT 58.642 39.130 0.00 0.00 0.00 3.50
312 313 5.520751 TGAAAAAGGAAAACTCCCAGGTTA 58.479 37.500 0.00 0.00 0.00 2.85
313 314 5.361571 TGAAAAAGGAAAACTCCCAGGTTAC 59.638 40.000 0.00 0.00 0.00 2.50
314 315 2.853235 AGGAAAACTCCCAGGTTACG 57.147 50.000 0.00 0.00 0.00 3.18
315 316 2.332117 AGGAAAACTCCCAGGTTACGA 58.668 47.619 0.00 0.00 0.00 3.43
316 317 2.038164 AGGAAAACTCCCAGGTTACGAC 59.962 50.000 0.00 0.00 0.00 4.34
317 318 2.224354 GGAAAACTCCCAGGTTACGACA 60.224 50.000 0.00 0.00 0.00 4.35
318 319 3.469739 GAAAACTCCCAGGTTACGACAA 58.530 45.455 0.00 0.00 0.00 3.18
319 320 2.833631 AACTCCCAGGTTACGACAAG 57.166 50.000 0.00 0.00 0.00 3.16
320 321 1.713297 ACTCCCAGGTTACGACAAGT 58.287 50.000 0.00 0.00 0.00 3.16
321 322 1.343465 ACTCCCAGGTTACGACAAGTG 59.657 52.381 0.00 0.00 0.00 3.16
322 323 1.616865 CTCCCAGGTTACGACAAGTGA 59.383 52.381 0.00 0.00 0.00 3.41
323 324 1.342174 TCCCAGGTTACGACAAGTGAC 59.658 52.381 0.00 0.00 38.48 3.67
324 325 1.415374 CCAGGTTACGACAAGTGACG 58.585 55.000 1.71 1.71 39.92 4.35
325 326 1.269413 CCAGGTTACGACAAGTGACGT 60.269 52.381 12.92 12.92 46.64 4.34
326 327 1.784856 CAGGTTACGACAAGTGACGTG 59.215 52.381 16.92 0.00 44.56 4.49
327 328 0.505655 GGTTACGACAAGTGACGTGC 59.494 55.000 16.92 10.32 44.93 5.34
328 329 0.158096 GTTACGACAAGTGACGTGCG 59.842 55.000 16.92 11.81 44.93 5.34
329 330 1.542272 TTACGACAAGTGACGTGCGC 61.542 55.000 16.92 0.00 44.93 6.09
330 331 4.394941 CGACAAGTGACGTGCGCG 62.395 66.667 19.78 19.78 44.93 6.86
331 332 4.702826 GACAAGTGACGTGCGCGC 62.703 66.667 27.26 27.26 42.83 6.86
337 338 4.649310 TGACGTGCGCGCCACTTA 62.649 61.111 30.77 6.23 42.42 2.24
338 339 3.186047 GACGTGCGCGCCACTTAT 61.186 61.111 30.77 13.89 42.42 1.73
339 340 3.139118 GACGTGCGCGCCACTTATC 62.139 63.158 30.77 17.88 42.42 1.75
340 341 3.185365 CGTGCGCGCCACTTATCA 61.185 61.111 30.77 3.44 42.42 2.15
341 342 2.399611 GTGCGCGCCACTTATCAC 59.600 61.111 30.77 13.79 41.35 3.06
342 343 2.047750 TGCGCGCCACTTATCACA 60.048 55.556 30.77 1.61 0.00 3.58
343 344 1.669437 TGCGCGCCACTTATCACAA 60.669 52.632 30.77 0.96 0.00 3.33
344 345 1.226018 GCGCGCCACTTATCACAAC 60.226 57.895 23.24 0.00 0.00 3.32
345 346 1.635663 GCGCGCCACTTATCACAACT 61.636 55.000 23.24 0.00 0.00 3.16
346 347 1.635844 CGCGCCACTTATCACAACTA 58.364 50.000 0.00 0.00 0.00 2.24
347 348 1.588404 CGCGCCACTTATCACAACTAG 59.412 52.381 0.00 0.00 0.00 2.57
348 349 2.734175 CGCGCCACTTATCACAACTAGA 60.734 50.000 0.00 0.00 0.00 2.43
349 350 2.860735 GCGCCACTTATCACAACTAGAG 59.139 50.000 0.00 0.00 0.00 2.43
350 351 3.448686 CGCCACTTATCACAACTAGAGG 58.551 50.000 0.00 0.00 0.00 3.69
351 352 3.130516 CGCCACTTATCACAACTAGAGGA 59.869 47.826 0.00 0.00 0.00 3.71
352 353 4.688021 GCCACTTATCACAACTAGAGGAG 58.312 47.826 0.00 0.00 0.00 3.69
353 354 4.160626 GCCACTTATCACAACTAGAGGAGT 59.839 45.833 0.00 0.00 41.56 3.85
355 356 6.702329 CCACTTATCACAACTAGAGGAGTTT 58.298 40.000 0.00 0.00 46.79 2.66
356 357 6.591834 CCACTTATCACAACTAGAGGAGTTTG 59.408 42.308 0.00 0.00 46.79 2.93
357 358 7.378966 CACTTATCACAACTAGAGGAGTTTGA 58.621 38.462 0.00 0.00 46.79 2.69
358 359 8.037758 CACTTATCACAACTAGAGGAGTTTGAT 58.962 37.037 0.00 14.06 46.79 2.57
359 360 8.254508 ACTTATCACAACTAGAGGAGTTTGATC 58.745 37.037 0.00 0.00 46.79 2.92
360 361 6.865834 ATCACAACTAGAGGAGTTTGATCT 57.134 37.500 0.00 0.00 46.79 2.75
361 362 6.672266 TCACAACTAGAGGAGTTTGATCTT 57.328 37.500 0.00 0.00 46.79 2.40
362 363 7.067496 TCACAACTAGAGGAGTTTGATCTTT 57.933 36.000 0.00 0.00 46.79 2.52
363 364 6.931281 TCACAACTAGAGGAGTTTGATCTTTG 59.069 38.462 0.00 0.00 46.79 2.77
364 365 5.703130 ACAACTAGAGGAGTTTGATCTTTGC 59.297 40.000 0.00 0.00 46.79 3.68
365 366 5.489792 ACTAGAGGAGTTTGATCTTTGCA 57.510 39.130 0.00 0.00 33.13 4.08
366 367 5.869579 ACTAGAGGAGTTTGATCTTTGCAA 58.130 37.500 0.00 0.00 33.13 4.08
367 368 5.936956 ACTAGAGGAGTTTGATCTTTGCAAG 59.063 40.000 0.00 0.00 33.13 4.01
368 369 4.077822 AGAGGAGTTTGATCTTTGCAAGG 58.922 43.478 1.35 1.35 0.00 3.61
369 370 4.074970 GAGGAGTTTGATCTTTGCAAGGA 58.925 43.478 14.17 14.17 0.00 3.36
370 371 4.077822 AGGAGTTTGATCTTTGCAAGGAG 58.922 43.478 16.88 4.58 0.00 3.69
371 372 3.823304 GGAGTTTGATCTTTGCAAGGAGT 59.177 43.478 16.88 5.44 0.00 3.85
372 373 5.003804 GGAGTTTGATCTTTGCAAGGAGTA 58.996 41.667 16.88 5.52 0.00 2.59
373 374 5.649831 GGAGTTTGATCTTTGCAAGGAGTAT 59.350 40.000 16.88 0.00 0.00 2.12
374 375 6.151817 GGAGTTTGATCTTTGCAAGGAGTATT 59.848 38.462 16.88 0.00 0.00 1.89
375 376 7.150783 AGTTTGATCTTTGCAAGGAGTATTC 57.849 36.000 16.88 9.75 0.00 1.75
376 377 6.151817 AGTTTGATCTTTGCAAGGAGTATTCC 59.848 38.462 16.88 0.00 44.39 3.01
387 388 2.478292 GGAGTATTCCTCAACCAGGGA 58.522 52.381 0.00 0.00 43.67 4.20
388 389 3.049344 GGAGTATTCCTCAACCAGGGAT 58.951 50.000 0.00 0.00 44.02 3.85
389 390 3.459969 GGAGTATTCCTCAACCAGGGATT 59.540 47.826 0.00 0.00 37.12 3.01
390 391 4.079730 GGAGTATTCCTCAACCAGGGATTT 60.080 45.833 0.00 0.00 37.12 2.17
391 392 5.117406 AGTATTCCTCAACCAGGGATTTC 57.883 43.478 0.00 0.00 37.12 2.17
392 393 4.790790 AGTATTCCTCAACCAGGGATTTCT 59.209 41.667 0.00 0.00 37.12 2.52
393 394 3.439857 TTCCTCAACCAGGGATTTCTG 57.560 47.619 0.00 0.00 43.67 3.02
394 395 9.955537 GAGTATTCCTCAACCAGGGATTTCTGG 62.956 48.148 9.13 9.13 37.12 3.86
402 403 3.362870 CAGGGATTTCTGGAGAAAGCT 57.637 47.619 15.06 0.00 46.30 3.74
403 404 4.494091 CAGGGATTTCTGGAGAAAGCTA 57.506 45.455 15.06 0.00 46.30 3.32
404 405 5.046288 CAGGGATTTCTGGAGAAAGCTAT 57.954 43.478 15.06 3.96 46.30 2.97
405 406 5.444176 CAGGGATTTCTGGAGAAAGCTATT 58.556 41.667 15.06 1.69 46.30 1.73
406 407 5.890419 CAGGGATTTCTGGAGAAAGCTATTT 59.110 40.000 15.06 0.00 46.30 1.40
407 408 6.379417 CAGGGATTTCTGGAGAAAGCTATTTT 59.621 38.462 15.06 0.00 46.30 1.82
408 409 6.605194 AGGGATTTCTGGAGAAAGCTATTTTC 59.395 38.462 15.06 3.57 46.30 2.29
418 419 4.676546 GAAAGCTATTTTCTCCATGTGGC 58.323 43.478 0.00 0.00 41.61 5.01
419 420 2.292267 AGCTATTTTCTCCATGTGGCG 58.708 47.619 0.00 0.00 34.44 5.69
420 421 1.268743 GCTATTTTCTCCATGTGGCGC 60.269 52.381 0.00 0.00 34.44 6.53
421 422 2.292267 CTATTTTCTCCATGTGGCGCT 58.708 47.619 7.64 0.00 34.44 5.92
422 423 1.098050 ATTTTCTCCATGTGGCGCTC 58.902 50.000 7.64 1.21 34.44 5.03
423 424 0.250684 TTTTCTCCATGTGGCGCTCA 60.251 50.000 7.64 7.90 34.44 4.26
424 425 0.955428 TTTCTCCATGTGGCGCTCAC 60.955 55.000 18.49 18.49 46.23 3.51
469 470 6.766467 AGTTGGGCTTCTATAACGAAATTAGG 59.234 38.462 0.00 0.00 0.00 2.69
470 471 6.243216 TGGGCTTCTATAACGAAATTAGGT 57.757 37.500 0.00 0.00 0.00 3.08
500 501 6.412214 AGGCAAATATAACGAAACTAGTGGT 58.588 36.000 0.00 0.00 0.00 4.16
548 549 5.405873 GCTTCTATAACGAAATGGGCTACTC 59.594 44.000 0.00 0.00 0.00 2.59
787 792 5.531287 AGTTGTTATATCTTTTGCGGGGATC 59.469 40.000 0.00 0.00 0.00 3.36
1000 1005 2.821546 CTGATTAATCTCGGCGGTTGA 58.178 47.619 16.24 3.67 0.00 3.18
1023 1028 8.792830 TGATGGTTAGGTCTTGGTTAGTATAT 57.207 34.615 0.00 0.00 0.00 0.86
1070 1083 8.684386 TGTTTTACCATGTTTGACTGATTAGA 57.316 30.769 0.00 0.00 0.00 2.10
1071 1084 9.126151 TGTTTTACCATGTTTGACTGATTAGAA 57.874 29.630 0.00 0.00 0.00 2.10
1292 1305 5.708736 TGGTTGATTGATAAAGCTAGGGA 57.291 39.130 0.00 0.00 0.00 4.20
1954 1967 1.004745 TGAATTCTGAGTGGGGGCTTC 59.995 52.381 7.05 0.00 0.00 3.86
2200 2213 6.417635 GCAAGAGAAGACAGAAGAGATATTCG 59.582 42.308 0.00 0.00 34.27 3.34
2397 2410 0.593128 AACACGACAAGAGCAATGCC 59.407 50.000 0.00 0.00 0.00 4.40
2417 2430 3.567585 GCCTTAGATTCTGAAATCCAGCC 59.432 47.826 0.00 0.00 41.97 4.85
2433 2446 1.475280 CAGCCAATACATTGTGCTGCT 59.525 47.619 21.58 12.22 45.57 4.24
2577 2590 5.469421 GGCAACCATCATTAGAGAAGAGATG 59.531 44.000 0.00 0.00 36.67 2.90
2995 3012 2.270205 GCAGGCTGGAGCAAGCTA 59.730 61.111 17.64 0.00 43.06 3.32
2998 3015 0.818445 CAGGCTGGAGCAAGCTATGG 60.818 60.000 6.61 0.00 43.06 2.74
3040 3057 2.783135 TCATTTCCAGTGAGTTGCTCC 58.217 47.619 0.00 0.00 0.00 4.70
3058 3075 4.397103 TGCTCCACAGATTTAGAAATGCTG 59.603 41.667 10.39 10.39 33.60 4.41
3077 3094 1.827969 TGCAGACTCTCTAAAGGAGGC 59.172 52.381 0.00 0.00 42.10 4.70
3214 3236 8.765488 ATCTATGAGAGAGTTTGAGAATCTGA 57.235 34.615 0.00 0.00 37.70 3.27
3450 3695 1.200020 GGATGGTGTCCTTTTCTTGCG 59.800 52.381 0.00 0.00 44.16 4.85
3600 3845 8.587950 GCTCGAGGTAAATATAATTTCAGATCG 58.412 37.037 15.58 0.00 0.00 3.69
3649 3895 4.919206 TGTTCCATGTATATTGCTTTGCG 58.081 39.130 0.00 0.00 0.00 4.85
3846 4120 3.681593 TGCAACACTATTCTGGGGTAAC 58.318 45.455 0.00 0.00 0.00 2.50
3874 4149 6.701841 TCGATAATTAGTCCATCTCTGTTTGC 59.298 38.462 0.00 0.00 0.00 3.68
3875 4150 6.479990 CGATAATTAGTCCATCTCTGTTTGCA 59.520 38.462 0.00 0.00 0.00 4.08
3889 4164 3.583806 TGTTTGCAGTTGACCAAAACAG 58.416 40.909 0.00 0.00 33.25 3.16
4012 4288 3.845781 TTTGAGGGCATGTCTAGGATC 57.154 47.619 0.00 0.00 0.00 3.36
4135 4418 2.906691 TGTTGGCTGGTTTTGATTGG 57.093 45.000 0.00 0.00 0.00 3.16
4243 4645 0.960364 CAACAGCTACCGGCCATGTT 60.960 55.000 0.00 5.13 43.05 2.71
4257 4659 0.166597 CATGTTGACGTTGCGCTCAT 59.833 50.000 9.73 0.00 0.00 2.90
4374 4776 1.225376 TGACACGGTCATCGGCAAAC 61.225 55.000 3.02 0.00 44.45 2.93
4417 4819 3.003763 GAGGAGAGGGGTGCGGTT 61.004 66.667 0.00 0.00 0.00 4.44
4418 4820 2.529389 AGGAGAGGGGTGCGGTTT 60.529 61.111 0.00 0.00 0.00 3.27
4469 4871 2.044451 CGGTTGCCATGCCCCTAA 60.044 61.111 0.00 0.00 0.00 2.69
4471 4873 0.179004 CGGTTGCCATGCCCCTAATA 60.179 55.000 0.00 0.00 0.00 0.98
4480 4882 1.971695 GCCCCTAATATGCACGCCC 60.972 63.158 0.00 0.00 0.00 6.13
4516 4918 1.405821 ACTGATTCCTGTCGTCGATCC 59.594 52.381 0.00 0.00 0.00 3.36
4517 4919 1.678627 CTGATTCCTGTCGTCGATCCT 59.321 52.381 0.00 0.00 0.00 3.24
4633 5037 1.377202 GACTCGCCCATTCTTGCCA 60.377 57.895 0.00 0.00 0.00 4.92
4763 5278 1.344953 TGTGGAGGAGCAGGTTGTGT 61.345 55.000 0.00 0.00 0.00 3.72
5232 5747 3.396685 AAGGACATAGACAGAGGAGCT 57.603 47.619 0.00 0.00 0.00 4.09
5252 5767 0.464452 GGGGTGGTCGTAGAATGAGG 59.536 60.000 0.00 0.00 39.69 3.86
5289 5804 0.465460 TTGTCAAAGCCGACCAAGCT 60.465 50.000 0.00 0.00 44.19 3.74
5373 5897 4.421479 CGTCAACGCCTCGCTCCT 62.421 66.667 0.00 0.00 0.00 3.69
5406 6174 2.254951 CGCCGCATCAAGCAAACA 59.745 55.556 0.00 0.00 46.13 2.83
5457 6335 2.659016 CACTGGCTCCTTGCTCGA 59.341 61.111 0.00 0.00 42.39 4.04
5460 6338 1.294780 CTGGCTCCTTGCTCGACTT 59.705 57.895 0.00 0.00 42.39 3.01
5598 6841 2.503765 AGTCAAAACCAAAAAGGGGGTG 59.496 45.455 0.00 0.00 43.89 4.61
5761 7152 1.311859 GAATTGCTGGCATCCATCGA 58.688 50.000 0.00 0.00 30.82 3.59
5762 7153 1.884579 GAATTGCTGGCATCCATCGAT 59.115 47.619 0.00 0.00 30.82 3.59
5816 7211 7.680442 TTATGATTTTGATGTTTCTGTCGGA 57.320 32.000 0.00 0.00 0.00 4.55
6060 7457 1.134965 CAGAGTAGCTTGTTCCCCTCG 60.135 57.143 0.00 0.00 0.00 4.63
6302 7809 3.140623 GGCATTTGTGTTGGAGCAAATT 58.859 40.909 0.00 0.00 41.62 1.82
6316 7823 8.458843 GTTGGAGCAAATTATTTGAGTTAGCTA 58.541 33.333 20.37 0.00 43.26 3.32
6331 7838 9.684448 TTGAGTTAGCTATTATCTCAGAAATCG 57.316 33.333 13.80 0.00 38.61 3.34
6342 7849 3.509967 TCTCAGAAATCGACAGTTGGCTA 59.490 43.478 0.00 0.00 0.00 3.93
6352 7859 8.911247 AATCGACAGTTGGCTATTTTATTTTC 57.089 30.769 0.00 0.00 0.00 2.29
6552 10152 3.935203 CGGATGATGACTTACAGTTTGCT 59.065 43.478 0.00 0.00 0.00 3.91
6601 10230 8.875803 TCATCAGAAATTTATCAATTTTGCAGC 58.124 29.630 0.00 0.00 41.79 5.25
6602 10231 7.599630 TCAGAAATTTATCAATTTTGCAGCC 57.400 32.000 0.00 0.00 41.79 4.85
6603 10232 7.388437 TCAGAAATTTATCAATTTTGCAGCCT 58.612 30.769 0.00 0.00 41.79 4.58
6604 10233 7.879160 TCAGAAATTTATCAATTTTGCAGCCTT 59.121 29.630 0.00 0.00 41.79 4.35
6605 10234 8.173130 CAGAAATTTATCAATTTTGCAGCCTTC 58.827 33.333 0.00 0.00 41.79 3.46
6606 10235 7.879160 AGAAATTTATCAATTTTGCAGCCTTCA 59.121 29.630 0.00 0.00 41.79 3.02
6607 10236 8.570068 AAATTTATCAATTTTGCAGCCTTCAT 57.430 26.923 0.00 0.00 39.19 2.57
6608 10237 7.781548 ATTTATCAATTTTGCAGCCTTCATC 57.218 32.000 0.00 0.00 0.00 2.92
6609 10238 4.811969 ATCAATTTTGCAGCCTTCATCA 57.188 36.364 0.00 0.00 0.00 3.07
6610 10239 4.182693 TCAATTTTGCAGCCTTCATCAG 57.817 40.909 0.00 0.00 0.00 2.90
6611 10240 3.827876 TCAATTTTGCAGCCTTCATCAGA 59.172 39.130 0.00 0.00 0.00 3.27
6612 10241 4.281435 TCAATTTTGCAGCCTTCATCAGAA 59.719 37.500 0.00 0.00 0.00 3.02
6613 10242 4.877378 ATTTTGCAGCCTTCATCAGAAA 57.123 36.364 0.00 0.00 32.35 2.52
6614 10243 4.877378 TTTTGCAGCCTTCATCAGAAAT 57.123 36.364 0.00 0.00 32.35 2.17
6615 10244 4.877378 TTTGCAGCCTTCATCAGAAATT 57.123 36.364 0.00 0.00 32.35 1.82
6616 10245 4.877378 TTGCAGCCTTCATCAGAAATTT 57.123 36.364 0.00 0.00 32.35 1.82
6617 10246 5.981088 TTGCAGCCTTCATCAGAAATTTA 57.019 34.783 0.00 0.00 32.35 1.40
6618 10247 6.534475 TTGCAGCCTTCATCAGAAATTTAT 57.466 33.333 0.00 0.00 32.35 1.40
6619 10248 6.140303 TGCAGCCTTCATCAGAAATTTATC 57.860 37.500 0.00 0.00 32.35 1.75
6620 10249 5.653330 TGCAGCCTTCATCAGAAATTTATCA 59.347 36.000 0.00 0.00 32.35 2.15
6621 10250 6.153170 TGCAGCCTTCATCAGAAATTTATCAA 59.847 34.615 0.00 0.00 32.35 2.57
6622 10251 7.147794 TGCAGCCTTCATCAGAAATTTATCAAT 60.148 33.333 0.00 0.00 32.35 2.57
6623 10252 7.709613 GCAGCCTTCATCAGAAATTTATCAATT 59.290 33.333 0.00 0.00 33.72 2.32
6624 10253 9.595823 CAGCCTTCATCAGAAATTTATCAATTT 57.404 29.630 0.00 0.00 43.97 1.82
6636 10265 6.636666 ATTTATCAATTTCACTTGCAAGCG 57.363 33.333 26.27 17.45 0.00 4.68
6689 10325 8.120140 AGAAATCCAGAGAAAAAGGAATCTTG 57.880 34.615 0.00 0.00 34.62 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.278669 GGAAGGGGAAGAAAGAGAAAACAC 59.721 45.833 0.00 0.00 0.00 3.32
1 2 4.470602 GGAAGGGGAAGAAAGAGAAAACA 58.529 43.478 0.00 0.00 0.00 2.83
2 3 3.502595 CGGAAGGGGAAGAAAGAGAAAAC 59.497 47.826 0.00 0.00 0.00 2.43
3 4 3.751518 CGGAAGGGGAAGAAAGAGAAAA 58.248 45.455 0.00 0.00 0.00 2.29
4 5 2.552373 GCGGAAGGGGAAGAAAGAGAAA 60.552 50.000 0.00 0.00 0.00 2.52
5 6 1.003233 GCGGAAGGGGAAGAAAGAGAA 59.997 52.381 0.00 0.00 0.00 2.87
6 7 0.613777 GCGGAAGGGGAAGAAAGAGA 59.386 55.000 0.00 0.00 0.00 3.10
7 8 0.741221 CGCGGAAGGGGAAGAAAGAG 60.741 60.000 0.00 0.00 40.85 2.85
8 9 1.189524 TCGCGGAAGGGGAAGAAAGA 61.190 55.000 6.13 0.00 45.20 2.52
9 10 0.741221 CTCGCGGAAGGGGAAGAAAG 60.741 60.000 6.13 0.00 45.20 2.62
10 11 1.189524 TCTCGCGGAAGGGGAAGAAA 61.190 55.000 6.13 0.00 45.20 2.52
11 12 1.605058 CTCTCGCGGAAGGGGAAGAA 61.605 60.000 6.13 0.00 45.20 2.52
12 13 2.036731 TCTCGCGGAAGGGGAAGA 59.963 61.111 6.13 0.00 45.20 2.87
13 14 2.286127 GACTCTCGCGGAAGGGGAAG 62.286 65.000 6.13 0.00 45.20 3.46
14 15 2.283676 ACTCTCGCGGAAGGGGAA 60.284 61.111 6.13 0.00 45.20 3.97
15 16 2.754658 GACTCTCGCGGAAGGGGA 60.755 66.667 6.13 0.00 45.20 4.81
16 17 3.068691 TGACTCTCGCGGAAGGGG 61.069 66.667 6.13 0.00 45.20 4.79
17 18 2.182030 GTGACTCTCGCGGAAGGG 59.818 66.667 6.13 0.00 46.71 3.95
18 19 1.153939 CTGTGACTCTCGCGGAAGG 60.154 63.158 6.13 0.00 35.34 3.46
19 20 0.039074 AACTGTGACTCTCGCGGAAG 60.039 55.000 6.13 6.70 36.77 3.46
20 21 0.387929 AAACTGTGACTCTCGCGGAA 59.612 50.000 6.13 0.00 36.77 4.30
21 22 0.387929 AAAACTGTGACTCTCGCGGA 59.612 50.000 6.13 1.01 36.77 5.54
22 23 1.192534 GAAAAACTGTGACTCTCGCGG 59.807 52.381 6.13 0.00 39.10 6.46
23 24 2.128035 AGAAAAACTGTGACTCTCGCG 58.872 47.619 0.00 0.00 0.00 5.87
24 25 4.034048 TGAAAGAAAAACTGTGACTCTCGC 59.966 41.667 0.00 0.00 0.00 5.03
25 26 5.493735 GTGAAAGAAAAACTGTGACTCTCG 58.506 41.667 0.00 0.00 0.00 4.04
26 27 5.291128 TCGTGAAAGAAAAACTGTGACTCTC 59.709 40.000 0.00 0.00 0.00 3.20
27 28 5.175859 TCGTGAAAGAAAAACTGTGACTCT 58.824 37.500 0.00 0.00 0.00 3.24
28 29 5.291128 TCTCGTGAAAGAAAAACTGTGACTC 59.709 40.000 0.00 0.00 0.00 3.36
29 30 5.175859 TCTCGTGAAAGAAAAACTGTGACT 58.824 37.500 0.00 0.00 0.00 3.41
30 31 5.464965 TCTCGTGAAAGAAAAACTGTGAC 57.535 39.130 0.00 0.00 0.00 3.67
31 32 4.570772 CCTCTCGTGAAAGAAAAACTGTGA 59.429 41.667 0.00 0.00 0.00 3.58
32 33 4.786609 GCCTCTCGTGAAAGAAAAACTGTG 60.787 45.833 0.00 0.00 0.00 3.66
33 34 3.312697 GCCTCTCGTGAAAGAAAAACTGT 59.687 43.478 0.00 0.00 0.00 3.55
34 35 3.312421 TGCCTCTCGTGAAAGAAAAACTG 59.688 43.478 0.00 0.00 0.00 3.16
35 36 3.312697 GTGCCTCTCGTGAAAGAAAAACT 59.687 43.478 0.00 0.00 0.00 2.66
36 37 3.618698 GTGCCTCTCGTGAAAGAAAAAC 58.381 45.455 0.00 0.00 0.00 2.43
37 38 2.286833 CGTGCCTCTCGTGAAAGAAAAA 59.713 45.455 0.00 0.00 0.00 1.94
38 39 1.864711 CGTGCCTCTCGTGAAAGAAAA 59.135 47.619 0.00 0.00 0.00 2.29
39 40 1.497991 CGTGCCTCTCGTGAAAGAAA 58.502 50.000 0.00 0.00 0.00 2.52
40 41 0.319555 CCGTGCCTCTCGTGAAAGAA 60.320 55.000 0.00 0.00 0.00 2.52
41 42 1.289066 CCGTGCCTCTCGTGAAAGA 59.711 57.895 0.00 0.00 0.00 2.52
42 43 0.600255 AACCGTGCCTCTCGTGAAAG 60.600 55.000 0.00 0.00 0.00 2.62
43 44 0.878523 CAACCGTGCCTCTCGTGAAA 60.879 55.000 0.00 0.00 0.00 2.69
44 45 1.300620 CAACCGTGCCTCTCGTGAA 60.301 57.895 0.00 0.00 0.00 3.18
45 46 2.338620 CAACCGTGCCTCTCGTGA 59.661 61.111 0.00 0.00 0.00 4.35
46 47 2.029073 ACAACCGTGCCTCTCGTG 59.971 61.111 0.00 0.00 0.00 4.35
47 48 1.816863 ATCACAACCGTGCCTCTCGT 61.817 55.000 0.00 0.00 43.28 4.18
48 49 0.670546 AATCACAACCGTGCCTCTCG 60.671 55.000 0.00 0.00 43.28 4.04
49 50 1.464997 GAAATCACAACCGTGCCTCTC 59.535 52.381 0.00 0.00 43.28 3.20
50 51 1.523758 GAAATCACAACCGTGCCTCT 58.476 50.000 0.00 0.00 43.28 3.69
51 52 0.165944 CGAAATCACAACCGTGCCTC 59.834 55.000 0.00 0.00 43.28 4.70
52 53 0.534203 ACGAAATCACAACCGTGCCT 60.534 50.000 0.00 0.00 43.28 4.75
53 54 0.385473 CACGAAATCACAACCGTGCC 60.385 55.000 0.00 0.00 44.24 5.01
54 55 3.071495 CACGAAATCACAACCGTGC 57.929 52.632 0.00 0.00 44.24 5.34
56 57 2.404215 CTCTCACGAAATCACAACCGT 58.596 47.619 0.00 0.00 35.46 4.83
57 58 1.726791 CCTCTCACGAAATCACAACCG 59.273 52.381 0.00 0.00 0.00 4.44
58 59 1.464997 GCCTCTCACGAAATCACAACC 59.535 52.381 0.00 0.00 0.00 3.77
59 60 2.096218 GTGCCTCTCACGAAATCACAAC 60.096 50.000 0.00 0.00 35.76 3.32
60 61 2.143122 GTGCCTCTCACGAAATCACAA 58.857 47.619 0.00 0.00 35.76 3.33
61 62 1.795768 GTGCCTCTCACGAAATCACA 58.204 50.000 0.00 0.00 35.76 3.58
70 71 2.357517 CACACCCGTGCCTCTCAC 60.358 66.667 0.00 0.00 42.23 3.51
78 79 2.317609 CGAAAGAGGCACACCCGTG 61.318 63.158 0.00 0.00 46.56 4.94
79 80 2.030562 CGAAAGAGGCACACCCGT 59.969 61.111 0.00 0.00 39.21 5.28
80 81 2.725203 TTCCGAAAGAGGCACACCCG 62.725 60.000 0.00 0.00 39.21 5.28
81 82 0.536460 TTTCCGAAAGAGGCACACCC 60.536 55.000 0.00 0.00 36.11 4.61
82 83 0.875059 CTTTCCGAAAGAGGCACACC 59.125 55.000 14.72 0.00 41.02 4.16
83 84 0.875059 CCTTTCCGAAAGAGGCACAC 59.125 55.000 20.43 0.00 41.02 3.82
84 85 0.250727 CCCTTTCCGAAAGAGGCACA 60.251 55.000 20.43 0.00 41.02 4.57
85 86 0.036306 TCCCTTTCCGAAAGAGGCAC 59.964 55.000 20.43 0.00 41.02 5.01
86 87 0.768622 TTCCCTTTCCGAAAGAGGCA 59.231 50.000 20.43 8.95 41.02 4.75
87 88 1.905637 TTTCCCTTTCCGAAAGAGGC 58.094 50.000 20.43 0.00 41.02 4.70
88 89 3.889538 ACTTTTTCCCTTTCCGAAAGAGG 59.110 43.478 20.43 18.19 41.02 3.69
89 90 4.023107 GGACTTTTTCCCTTTCCGAAAGAG 60.023 45.833 20.43 9.08 38.70 2.85
90 91 3.887110 GGACTTTTTCCCTTTCCGAAAGA 59.113 43.478 20.43 0.95 38.70 2.52
91 92 4.238761 GGACTTTTTCCCTTTCCGAAAG 57.761 45.455 13.16 13.16 38.70 2.62
96 97 1.000607 GCACGGACTTTTTCCCTTTCC 60.001 52.381 0.00 0.00 42.27 3.13
97 98 1.954382 AGCACGGACTTTTTCCCTTTC 59.046 47.619 0.00 0.00 42.27 2.62
98 99 1.954382 GAGCACGGACTTTTTCCCTTT 59.046 47.619 0.00 0.00 42.27 3.11
99 100 1.605753 GAGCACGGACTTTTTCCCTT 58.394 50.000 0.00 0.00 42.27 3.95
100 101 0.250770 GGAGCACGGACTTTTTCCCT 60.251 55.000 0.00 0.00 42.27 4.20
101 102 1.241990 GGGAGCACGGACTTTTTCCC 61.242 60.000 0.00 0.00 42.27 3.97
102 103 1.574702 CGGGAGCACGGACTTTTTCC 61.575 60.000 0.00 0.00 41.75 3.13
103 104 1.866925 CGGGAGCACGGACTTTTTC 59.133 57.895 0.00 0.00 0.00 2.29
104 105 4.058797 CGGGAGCACGGACTTTTT 57.941 55.556 0.00 0.00 0.00 1.94
112 113 1.164041 AAAACTGAACCGGGAGCACG 61.164 55.000 6.32 0.00 0.00 5.34
113 114 1.029681 AAAAACTGAACCGGGAGCAC 58.970 50.000 6.32 0.00 0.00 4.40
114 115 3.505835 AAAAACTGAACCGGGAGCA 57.494 47.368 6.32 0.00 0.00 4.26
166 167 6.183360 TGTTGATAGGTTTTGACGAGCTTTTT 60.183 34.615 0.00 0.00 0.00 1.94
167 168 5.298276 TGTTGATAGGTTTTGACGAGCTTTT 59.702 36.000 0.00 0.00 0.00 2.27
168 169 4.819630 TGTTGATAGGTTTTGACGAGCTTT 59.180 37.500 0.00 0.00 0.00 3.51
169 170 4.385825 TGTTGATAGGTTTTGACGAGCTT 58.614 39.130 0.00 0.00 0.00 3.74
170 171 4.002906 TGTTGATAGGTTTTGACGAGCT 57.997 40.909 0.00 0.00 0.00 4.09
171 172 4.437390 CCATGTTGATAGGTTTTGACGAGC 60.437 45.833 0.00 0.00 0.00 5.03
172 173 4.094887 CCCATGTTGATAGGTTTTGACGAG 59.905 45.833 0.00 0.00 0.00 4.18
173 174 4.006989 CCCATGTTGATAGGTTTTGACGA 58.993 43.478 0.00 0.00 0.00 4.20
174 175 4.006989 TCCCATGTTGATAGGTTTTGACG 58.993 43.478 0.00 0.00 0.00 4.35
175 176 5.888161 AGATCCCATGTTGATAGGTTTTGAC 59.112 40.000 0.00 0.00 0.00 3.18
176 177 6.078456 AGATCCCATGTTGATAGGTTTTGA 57.922 37.500 0.00 0.00 0.00 2.69
177 178 7.056635 ACTAGATCCCATGTTGATAGGTTTTG 58.943 38.462 0.00 0.00 0.00 2.44
178 179 7.213178 ACTAGATCCCATGTTGATAGGTTTT 57.787 36.000 0.00 0.00 0.00 2.43
179 180 6.831664 ACTAGATCCCATGTTGATAGGTTT 57.168 37.500 0.00 0.00 0.00 3.27
180 181 6.831664 AACTAGATCCCATGTTGATAGGTT 57.168 37.500 0.00 0.00 0.00 3.50
181 182 6.831664 AAACTAGATCCCATGTTGATAGGT 57.168 37.500 0.00 0.00 0.00 3.08
182 183 9.627123 TTTAAAACTAGATCCCATGTTGATAGG 57.373 33.333 0.00 0.00 0.00 2.57
185 186 9.927081 ATCTTTAAAACTAGATCCCATGTTGAT 57.073 29.630 0.00 0.00 0.00 2.57
186 187 9.396022 GATCTTTAAAACTAGATCCCATGTTGA 57.604 33.333 0.00 0.00 40.45 3.18
187 188 9.401058 AGATCTTTAAAACTAGATCCCATGTTG 57.599 33.333 10.09 0.00 45.05 3.33
188 189 9.620259 GAGATCTTTAAAACTAGATCCCATGTT 57.380 33.333 10.09 0.00 45.05 2.71
189 190 8.772250 TGAGATCTTTAAAACTAGATCCCATGT 58.228 33.333 10.09 0.00 45.05 3.21
190 191 9.618890 TTGAGATCTTTAAAACTAGATCCCATG 57.381 33.333 10.09 0.00 45.05 3.66
191 192 9.620259 GTTGAGATCTTTAAAACTAGATCCCAT 57.380 33.333 10.09 0.00 45.05 4.00
192 193 7.764443 CGTTGAGATCTTTAAAACTAGATCCCA 59.236 37.037 10.09 3.88 45.05 4.37
193 194 7.254488 GCGTTGAGATCTTTAAAACTAGATCCC 60.254 40.741 10.09 1.67 45.05 3.85
194 195 7.515371 CGCGTTGAGATCTTTAAAACTAGATCC 60.515 40.741 10.09 4.72 45.05 3.36
195 196 7.220300 TCGCGTTGAGATCTTTAAAACTAGATC 59.780 37.037 5.77 6.74 44.54 2.75
196 197 7.009357 GTCGCGTTGAGATCTTTAAAACTAGAT 59.991 37.037 5.77 0.00 33.92 1.98
197 198 6.307318 GTCGCGTTGAGATCTTTAAAACTAGA 59.693 38.462 5.77 0.52 0.00 2.43
198 199 6.459330 GTCGCGTTGAGATCTTTAAAACTAG 58.541 40.000 5.77 0.00 0.00 2.57
199 200 5.060077 CGTCGCGTTGAGATCTTTAAAACTA 59.940 40.000 5.77 0.00 0.00 2.24
200 201 4.143389 CGTCGCGTTGAGATCTTTAAAACT 60.143 41.667 5.77 0.00 0.00 2.66
201 202 4.072919 CGTCGCGTTGAGATCTTTAAAAC 58.927 43.478 5.77 0.00 0.00 2.43
202 203 3.422603 GCGTCGCGTTGAGATCTTTAAAA 60.423 43.478 5.77 0.00 0.00 1.52
203 204 2.091588 GCGTCGCGTTGAGATCTTTAAA 59.908 45.455 5.77 0.00 0.00 1.52
204 205 1.652124 GCGTCGCGTTGAGATCTTTAA 59.348 47.619 5.77 0.00 0.00 1.52
205 206 1.265568 GCGTCGCGTTGAGATCTTTA 58.734 50.000 5.77 0.00 0.00 1.85
206 207 2.070861 GCGTCGCGTTGAGATCTTT 58.929 52.632 5.77 0.00 0.00 2.52
207 208 3.768632 GCGTCGCGTTGAGATCTT 58.231 55.556 5.77 0.00 0.00 2.40
218 219 2.508439 TTGGATTCCTCGCGTCGC 60.508 61.111 7.29 7.29 0.00 5.19
219 220 2.505498 CGTTGGATTCCTCGCGTCG 61.505 63.158 5.77 0.00 0.00 5.12
220 221 2.165301 CCGTTGGATTCCTCGCGTC 61.165 63.158 5.77 0.00 0.00 5.19
221 222 2.125673 CCGTTGGATTCCTCGCGT 60.126 61.111 5.77 0.00 0.00 6.01
222 223 2.125673 ACCGTTGGATTCCTCGCG 60.126 61.111 0.00 0.00 0.00 5.87
223 224 0.672401 TTCACCGTTGGATTCCTCGC 60.672 55.000 3.95 0.00 0.00 5.03
224 225 1.732259 CTTTCACCGTTGGATTCCTCG 59.268 52.381 3.95 8.76 0.00 4.63
225 226 1.468914 GCTTTCACCGTTGGATTCCTC 59.531 52.381 3.95 0.00 0.00 3.71
226 227 1.534729 GCTTTCACCGTTGGATTCCT 58.465 50.000 3.95 0.00 0.00 3.36
227 228 0.168128 CGCTTTCACCGTTGGATTCC 59.832 55.000 0.00 0.00 0.00 3.01
228 229 0.168128 CCGCTTTCACCGTTGGATTC 59.832 55.000 0.00 0.00 0.00 2.52
229 230 0.250553 TCCGCTTTCACCGTTGGATT 60.251 50.000 0.00 0.00 0.00 3.01
230 231 0.035439 ATCCGCTTTCACCGTTGGAT 60.035 50.000 0.00 0.00 0.00 3.41
231 232 0.672401 GATCCGCTTTCACCGTTGGA 60.672 55.000 0.00 0.00 0.00 3.53
232 233 1.794222 GATCCGCTTTCACCGTTGG 59.206 57.895 0.00 0.00 0.00 3.77
233 234 1.011968 TCGATCCGCTTTCACCGTTG 61.012 55.000 0.00 0.00 0.00 4.10
234 235 0.736325 CTCGATCCGCTTTCACCGTT 60.736 55.000 0.00 0.00 0.00 4.44
235 236 1.153823 CTCGATCCGCTTTCACCGT 60.154 57.895 0.00 0.00 0.00 4.83
236 237 0.249073 ATCTCGATCCGCTTTCACCG 60.249 55.000 0.00 0.00 0.00 4.94
237 238 1.941325 AATCTCGATCCGCTTTCACC 58.059 50.000 0.00 0.00 0.00 4.02
238 239 2.030946 CCAAATCTCGATCCGCTTTCAC 59.969 50.000 0.00 0.00 0.00 3.18
239 240 2.093711 TCCAAATCTCGATCCGCTTTCA 60.094 45.455 0.00 0.00 0.00 2.69
240 241 2.285488 GTCCAAATCTCGATCCGCTTTC 59.715 50.000 0.00 0.00 0.00 2.62
241 242 2.280628 GTCCAAATCTCGATCCGCTTT 58.719 47.619 0.00 0.00 0.00 3.51
242 243 1.802880 CGTCCAAATCTCGATCCGCTT 60.803 52.381 0.00 0.00 0.00 4.68
243 244 0.249073 CGTCCAAATCTCGATCCGCT 60.249 55.000 0.00 0.00 0.00 5.52
244 245 1.822250 GCGTCCAAATCTCGATCCGC 61.822 60.000 0.00 0.00 0.00 5.54
245 246 0.527600 TGCGTCCAAATCTCGATCCG 60.528 55.000 0.00 0.00 0.00 4.18
246 247 0.931005 GTGCGTCCAAATCTCGATCC 59.069 55.000 0.00 0.00 0.00 3.36
247 248 0.572590 CGTGCGTCCAAATCTCGATC 59.427 55.000 0.00 0.00 0.00 3.69
248 249 0.806102 CCGTGCGTCCAAATCTCGAT 60.806 55.000 0.00 0.00 0.00 3.59
249 250 1.445410 CCGTGCGTCCAAATCTCGA 60.445 57.895 0.00 0.00 0.00 4.04
250 251 1.289109 AACCGTGCGTCCAAATCTCG 61.289 55.000 0.00 0.00 0.00 4.04
251 252 0.872388 AAACCGTGCGTCCAAATCTC 59.128 50.000 0.00 0.00 0.00 2.75
252 253 0.591170 CAAACCGTGCGTCCAAATCT 59.409 50.000 0.00 0.00 0.00 2.40
253 254 0.589223 TCAAACCGTGCGTCCAAATC 59.411 50.000 0.00 0.00 0.00 2.17
254 255 0.591170 CTCAAACCGTGCGTCCAAAT 59.409 50.000 0.00 0.00 0.00 2.32
255 256 0.462225 TCTCAAACCGTGCGTCCAAA 60.462 50.000 0.00 0.00 0.00 3.28
256 257 0.462225 TTCTCAAACCGTGCGTCCAA 60.462 50.000 0.00 0.00 0.00 3.53
257 258 0.462225 TTTCTCAAACCGTGCGTCCA 60.462 50.000 0.00 0.00 0.00 4.02
258 259 0.872388 ATTTCTCAAACCGTGCGTCC 59.128 50.000 0.00 0.00 0.00 4.79
259 260 3.799137 TTATTTCTCAAACCGTGCGTC 57.201 42.857 0.00 0.00 0.00 5.19
260 261 3.605231 CGTTTATTTCTCAAACCGTGCGT 60.605 43.478 0.00 0.00 33.27 5.24
261 262 2.900046 CGTTTATTTCTCAAACCGTGCG 59.100 45.455 0.00 0.00 33.27 5.34
262 263 4.136517 TCGTTTATTTCTCAAACCGTGC 57.863 40.909 0.00 0.00 33.27 5.34
263 264 6.599437 AGATTCGTTTATTTCTCAAACCGTG 58.401 36.000 0.00 0.00 33.27 4.94
264 265 6.796705 AGATTCGTTTATTTCTCAAACCGT 57.203 33.333 0.00 0.00 33.27 4.83
265 266 8.600625 TCATAGATTCGTTTATTTCTCAAACCG 58.399 33.333 0.00 0.00 33.27 4.44
278 279 9.678941 GAGTTTTCCTTTTTCATAGATTCGTTT 57.321 29.630 0.00 0.00 0.00 3.60
279 280 8.297426 GGAGTTTTCCTTTTTCATAGATTCGTT 58.703 33.333 0.00 0.00 40.58 3.85
280 281 7.094334 GGGAGTTTTCCTTTTTCATAGATTCGT 60.094 37.037 0.00 0.00 43.49 3.85
281 282 7.094377 TGGGAGTTTTCCTTTTTCATAGATTCG 60.094 37.037 0.00 0.00 43.49 3.34
282 283 8.122472 TGGGAGTTTTCCTTTTTCATAGATTC 57.878 34.615 0.00 0.00 43.49 2.52
283 284 7.179160 CCTGGGAGTTTTCCTTTTTCATAGATT 59.821 37.037 0.00 0.00 43.49 2.40
284 285 6.665248 CCTGGGAGTTTTCCTTTTTCATAGAT 59.335 38.462 0.00 0.00 43.49 1.98
285 286 6.010219 CCTGGGAGTTTTCCTTTTTCATAGA 58.990 40.000 0.00 0.00 43.49 1.98
286 287 5.775195 ACCTGGGAGTTTTCCTTTTTCATAG 59.225 40.000 0.00 0.00 43.49 2.23
287 288 5.711698 ACCTGGGAGTTTTCCTTTTTCATA 58.288 37.500 0.00 0.00 43.49 2.15
288 289 4.556697 ACCTGGGAGTTTTCCTTTTTCAT 58.443 39.130 0.00 0.00 43.49 2.57
289 290 3.989056 ACCTGGGAGTTTTCCTTTTTCA 58.011 40.909 0.00 0.00 43.49 2.69
290 291 5.506815 CGTAACCTGGGAGTTTTCCTTTTTC 60.507 44.000 0.00 0.00 43.49 2.29
291 292 4.340097 CGTAACCTGGGAGTTTTCCTTTTT 59.660 41.667 0.00 0.00 43.49 1.94
292 293 3.887110 CGTAACCTGGGAGTTTTCCTTTT 59.113 43.478 0.00 0.00 43.49 2.27
293 294 3.136992 TCGTAACCTGGGAGTTTTCCTTT 59.863 43.478 0.00 0.00 43.49 3.11
294 295 2.707257 TCGTAACCTGGGAGTTTTCCTT 59.293 45.455 0.00 0.00 43.49 3.36
295 296 2.038164 GTCGTAACCTGGGAGTTTTCCT 59.962 50.000 0.00 0.00 43.49 3.36
296 297 2.224354 TGTCGTAACCTGGGAGTTTTCC 60.224 50.000 0.00 0.00 43.23 3.13
297 298 3.116079 TGTCGTAACCTGGGAGTTTTC 57.884 47.619 0.00 0.00 0.00 2.29
298 299 3.118149 ACTTGTCGTAACCTGGGAGTTTT 60.118 43.478 0.00 0.00 0.00 2.43
299 300 2.436911 ACTTGTCGTAACCTGGGAGTTT 59.563 45.455 0.00 0.00 0.00 2.66
300 301 2.044758 ACTTGTCGTAACCTGGGAGTT 58.955 47.619 0.00 0.00 0.00 3.01
301 302 1.343465 CACTTGTCGTAACCTGGGAGT 59.657 52.381 0.00 0.00 0.00 3.85
302 303 1.616865 TCACTTGTCGTAACCTGGGAG 59.383 52.381 0.00 0.00 0.00 4.30
303 304 1.342174 GTCACTTGTCGTAACCTGGGA 59.658 52.381 0.00 0.00 0.00 4.37
304 305 1.792006 GTCACTTGTCGTAACCTGGG 58.208 55.000 0.00 0.00 0.00 4.45
305 306 1.269413 ACGTCACTTGTCGTAACCTGG 60.269 52.381 0.00 0.00 37.97 4.45
306 307 1.784856 CACGTCACTTGTCGTAACCTG 59.215 52.381 1.27 0.00 37.68 4.00
307 308 1.866880 GCACGTCACTTGTCGTAACCT 60.867 52.381 1.27 0.00 37.68 3.50
308 309 0.505655 GCACGTCACTTGTCGTAACC 59.494 55.000 1.27 0.00 37.68 2.85
309 310 0.158096 CGCACGTCACTTGTCGTAAC 59.842 55.000 1.27 0.00 37.68 2.50
310 311 1.542272 GCGCACGTCACTTGTCGTAA 61.542 55.000 0.30 0.00 37.68 3.18
311 312 2.012414 GCGCACGTCACTTGTCGTA 61.012 57.895 0.30 0.00 37.68 3.43
312 313 3.327754 GCGCACGTCACTTGTCGT 61.328 61.111 0.30 0.00 40.12 4.34
313 314 4.394941 CGCGCACGTCACTTGTCG 62.395 66.667 8.75 0.00 33.53 4.35
314 315 4.702826 GCGCGCACGTCACTTGTC 62.703 66.667 29.10 0.00 42.83 3.18
321 322 3.139118 GATAAGTGGCGCGCACGTC 62.139 63.158 34.42 21.74 46.48 4.34
322 323 3.186047 GATAAGTGGCGCGCACGT 61.186 61.111 34.42 26.04 42.83 4.49
323 324 3.185365 TGATAAGTGGCGCGCACG 61.185 61.111 34.42 0.00 44.07 5.34
324 325 1.906994 TTGTGATAAGTGGCGCGCAC 61.907 55.000 34.42 26.65 0.00 5.34
325 326 1.669437 TTGTGATAAGTGGCGCGCA 60.669 52.632 34.42 16.55 0.00 6.09
326 327 1.226018 GTTGTGATAAGTGGCGCGC 60.226 57.895 25.94 25.94 0.00 6.86
327 328 1.588404 CTAGTTGTGATAAGTGGCGCG 59.412 52.381 0.00 0.00 0.00 6.86
328 329 2.860735 CTCTAGTTGTGATAAGTGGCGC 59.139 50.000 0.00 0.00 0.00 6.53
329 330 3.130516 TCCTCTAGTTGTGATAAGTGGCG 59.869 47.826 0.00 0.00 0.00 5.69
330 331 4.160626 ACTCCTCTAGTTGTGATAAGTGGC 59.839 45.833 0.00 0.00 33.35 5.01
331 332 5.923733 ACTCCTCTAGTTGTGATAAGTGG 57.076 43.478 0.00 0.00 33.35 4.00
343 344 5.489792 TGCAAAGATCAAACTCCTCTAGT 57.510 39.130 0.00 0.00 41.49 2.57
367 368 2.478292 TCCCTGGTTGAGGAATACTCC 58.522 52.381 0.00 0.00 46.33 3.85
368 369 4.779993 AATCCCTGGTTGAGGAATACTC 57.220 45.455 0.00 0.00 46.33 2.59
369 370 4.790790 AGAAATCCCTGGTTGAGGAATACT 59.209 41.667 0.00 0.00 46.33 2.12
370 371 4.884164 CAGAAATCCCTGGTTGAGGAATAC 59.116 45.833 0.00 0.00 46.33 1.89
371 372 4.079787 CCAGAAATCCCTGGTTGAGGAATA 60.080 45.833 0.00 0.00 46.33 1.75
372 373 3.309410 CCAGAAATCCCTGGTTGAGGAAT 60.309 47.826 0.00 0.00 46.33 3.01
373 374 2.041620 CCAGAAATCCCTGGTTGAGGAA 59.958 50.000 0.00 0.00 46.33 3.36
374 375 1.635487 CCAGAAATCCCTGGTTGAGGA 59.365 52.381 0.00 0.00 46.33 3.71
375 376 2.134789 CCAGAAATCCCTGGTTGAGG 57.865 55.000 0.00 0.00 46.62 3.86
382 383 3.362870 AGCTTTCTCCAGAAATCCCTG 57.637 47.619 2.21 0.00 42.44 4.45
383 384 5.723860 AATAGCTTTCTCCAGAAATCCCT 57.276 39.130 2.21 3.20 42.44 4.20
384 385 6.782082 AAAATAGCTTTCTCCAGAAATCCC 57.218 37.500 2.21 0.00 42.44 3.85
396 397 4.676546 GCCACATGGAGAAAATAGCTTTC 58.323 43.478 0.87 0.00 38.74 2.62
397 398 3.129287 CGCCACATGGAGAAAATAGCTTT 59.871 43.478 0.87 0.00 37.14 3.51
398 399 2.684881 CGCCACATGGAGAAAATAGCTT 59.315 45.455 0.87 0.00 37.14 3.74
399 400 2.292267 CGCCACATGGAGAAAATAGCT 58.708 47.619 0.87 0.00 37.14 3.32
400 401 1.268743 GCGCCACATGGAGAAAATAGC 60.269 52.381 5.76 0.00 37.14 2.97
401 402 2.289002 GAGCGCCACATGGAGAAAATAG 59.711 50.000 2.29 0.00 37.14 1.73
402 403 2.288666 GAGCGCCACATGGAGAAAATA 58.711 47.619 2.29 0.00 37.14 1.40
403 404 1.098050 GAGCGCCACATGGAGAAAAT 58.902 50.000 2.29 0.00 37.14 1.82
404 405 0.250684 TGAGCGCCACATGGAGAAAA 60.251 50.000 2.29 0.00 37.14 2.29
405 406 0.955428 GTGAGCGCCACATGGAGAAA 60.955 55.000 19.85 0.00 45.03 2.52
406 407 1.375908 GTGAGCGCCACATGGAGAA 60.376 57.895 19.85 0.00 45.03 2.87
407 408 2.265739 GTGAGCGCCACATGGAGA 59.734 61.111 19.85 0.00 45.03 3.71
408 409 3.190849 CGTGAGCGCCACATGGAG 61.191 66.667 22.90 0.00 45.98 3.86
429 430 1.304713 AACTCAAGCCCAGCCCATG 60.305 57.895 0.00 0.00 0.00 3.66
430 431 1.304713 CAACTCAAGCCCAGCCCAT 60.305 57.895 0.00 0.00 0.00 4.00
441 442 4.811969 TCGTTATAGAAGCCCAACTCAA 57.188 40.909 0.00 0.00 0.00 3.02
493 494 1.396996 GCACATTACCGCAACCACTAG 59.603 52.381 0.00 0.00 0.00 2.57
500 501 1.065053 ACCCATAGCACATTACCGCAA 60.065 47.619 0.00 0.00 0.00 4.85
507 508 0.336048 AGCCCAACCCATAGCACATT 59.664 50.000 0.00 0.00 0.00 2.71
1030 1043 9.533253 CATGGTAAAACAAGAAAAATCAGAACT 57.467 29.630 0.00 0.00 0.00 3.01
1031 1044 9.313118 ACATGGTAAAACAAGAAAAATCAGAAC 57.687 29.630 0.00 0.00 0.00 3.01
1033 1046 9.883142 AAACATGGTAAAACAAGAAAAATCAGA 57.117 25.926 0.00 0.00 0.00 3.27
1034 1047 9.919348 CAAACATGGTAAAACAAGAAAAATCAG 57.081 29.630 0.00 0.00 0.00 2.90
1036 1049 9.914923 GTCAAACATGGTAAAACAAGAAAAATC 57.085 29.630 0.00 0.00 0.00 2.17
1037 1050 9.665719 AGTCAAACATGGTAAAACAAGAAAAAT 57.334 25.926 0.00 0.00 0.00 1.82
1070 1083 6.486993 GGAGTGCGGAGATAAATTAATCCTTT 59.513 38.462 6.20 0.00 0.00 3.11
1071 1084 5.998363 GGAGTGCGGAGATAAATTAATCCTT 59.002 40.000 6.20 0.00 0.00 3.36
1413 1426 4.362279 GCAAGTCACTGCAGAAATGAAAA 58.638 39.130 23.35 0.00 42.17 2.29
1430 1443 1.260544 GCTGGGATTTGAAGGCAAGT 58.739 50.000 0.00 0.00 35.04 3.16
1432 1445 0.114954 AGGCTGGGATTTGAAGGCAA 59.885 50.000 0.00 0.00 38.87 4.52
2200 2213 2.688364 AGCAGTTTTCGCTTTAGTGC 57.312 45.000 0.00 0.00 35.82 4.40
2397 2410 6.956202 ATTGGCTGGATTTCAGAATCTAAG 57.044 37.500 0.00 0.46 46.18 2.18
2417 2430 9.817365 GATTATTAGTAGCAGCACAATGTATTG 57.183 33.333 0.00 3.17 43.26 1.90
2433 2446 9.261180 GCACATGCTTCTACTTGATTATTAGTA 57.739 33.333 0.00 0.00 38.21 1.82
2454 2467 1.856629 CCTGGATGGGAAAAGCACAT 58.143 50.000 0.00 0.00 45.34 3.21
2577 2590 7.136119 CGAACTCTCTTAGTACAATCATCTCC 58.864 42.308 0.00 0.00 37.50 3.71
2701 2714 5.009010 ACAATGCAGAGTTGAGGTTTAACAG 59.991 40.000 5.55 0.00 0.00 3.16
2995 3012 5.097742 TCATTTTGACGTACATCCTCCAT 57.902 39.130 0.00 0.00 0.00 3.41
2998 3015 6.042777 TGATCTCATTTTGACGTACATCCTC 58.957 40.000 0.00 0.00 0.00 3.71
3040 3057 5.123502 AGTCTGCAGCATTTCTAAATCTGTG 59.876 40.000 9.47 8.53 31.80 3.66
3058 3075 1.202359 CGCCTCCTTTAGAGAGTCTGC 60.202 57.143 0.00 0.00 46.50 4.26
3077 3094 8.889849 ACGTAAATATTGATTTTGTTTCTCCG 57.110 30.769 0.00 0.00 36.62 4.63
3214 3236 8.959548 TGCAATGATAGTTTGTTGATCTGTAAT 58.040 29.630 0.00 0.00 0.00 1.89
3450 3695 4.023963 GGTCTTTCAGTAAACAGAACCTGC 60.024 45.833 0.00 0.00 34.37 4.85
3846 4120 7.447374 ACAGAGATGGACTAATTATCGAGAG 57.553 40.000 0.00 0.00 0.00 3.20
4012 4288 4.827284 AGGGTTGTAATGTGGACTTTTCTG 59.173 41.667 0.00 0.00 0.00 3.02
4123 4406 3.107601 TGGTCAAACCCAATCAAAACCA 58.892 40.909 0.00 0.00 37.50 3.67
4135 4418 0.382873 GGGTTCAACGTGGTCAAACC 59.617 55.000 3.87 3.87 38.90 3.27
4243 4645 2.741985 CCCATGAGCGCAACGTCA 60.742 61.111 11.47 4.51 0.00 4.35
4353 4755 0.533085 TTGCCGATGACCGTGTCAAA 60.533 50.000 10.17 0.00 45.96 2.69
4417 4819 4.018506 TCCTCATGCTTCCCACTAATTCAA 60.019 41.667 0.00 0.00 0.00 2.69
4418 4820 3.523157 TCCTCATGCTTCCCACTAATTCA 59.477 43.478 0.00 0.00 0.00 2.57
4469 4871 2.669569 GATGGCGGGCGTGCATAT 60.670 61.111 0.00 0.00 36.28 1.78
4480 4882 2.509336 GTGAGTCGTGGGATGGCG 60.509 66.667 0.00 0.00 0.00 5.69
4542 4944 1.307084 GCCCCAACCTCCTCTACCT 60.307 63.158 0.00 0.00 0.00 3.08
4567 4969 1.669115 CCTTGACTGGAGTGCCACG 60.669 63.158 0.00 0.00 39.92 4.94
4694 5172 0.912486 AAAACTCTAGGGAGCGCCAT 59.088 50.000 9.31 3.06 42.98 4.40
4702 5180 0.165944 CGCGCACAAAAACTCTAGGG 59.834 55.000 8.75 0.00 0.00 3.53
4705 5183 0.882927 AGGCGCGCACAAAAACTCTA 60.883 50.000 34.42 0.00 0.00 2.43
5232 5747 1.191535 CTCATTCTACGACCACCCCA 58.808 55.000 0.00 0.00 0.00 4.96
5235 5750 1.202268 CGACCTCATTCTACGACCACC 60.202 57.143 0.00 0.00 0.00 4.61
5276 5791 4.269523 TGCCAGCTTGGTCGGCTT 62.270 61.111 12.74 0.00 46.39 4.35
5277 5792 4.711949 CTGCCAGCTTGGTCGGCT 62.712 66.667 12.74 0.00 46.39 5.52
5373 5897 2.661537 CGTGCAAGTGCCTGACGA 60.662 61.111 8.47 0.00 39.37 4.20
5406 6174 1.829222 CAGCTCCTTTGCCATGGAAAT 59.171 47.619 18.40 0.00 31.23 2.17
5598 6841 2.238521 TGCCACTTGGTTCAGAAATCC 58.761 47.619 0.00 0.00 37.57 3.01
5640 6884 4.336280 GCTTAGGACTGAGAACCCAAAAT 58.664 43.478 0.00 0.00 0.00 1.82
5761 7152 4.142093 GGGTGCAAGAAAATCATGCTGTAT 60.142 41.667 8.74 0.00 41.23 2.29
5762 7153 3.193267 GGGTGCAAGAAAATCATGCTGTA 59.807 43.478 8.74 0.00 41.23 2.74
5816 7211 9.155975 CTGTGAAAGCAAGACTACAATAAGTAT 57.844 33.333 0.00 0.00 30.93 2.12
6060 7457 5.024785 ACTAGCAAAATCTACTGCCTACC 57.975 43.478 0.00 0.00 39.47 3.18
6226 7628 6.869421 ACATTTTCAGTCACAAAACGAAAG 57.131 33.333 0.00 0.00 0.00 2.62
6316 7823 5.525378 GCCAACTGTCGATTTCTGAGATAAT 59.475 40.000 0.00 0.00 0.00 1.28
6331 7838 9.087424 GATTGGAAAATAAAATAGCCAACTGTC 57.913 33.333 0.00 0.00 38.12 3.51
6552 10152 4.331968 AGGCTACAATTCCAATCGACAAA 58.668 39.130 0.00 0.00 0.00 2.83
6596 10225 5.653330 TGATAAATTTCTGATGAAGGCTGCA 59.347 36.000 0.00 0.00 33.28 4.41
6597 10226 6.140303 TGATAAATTTCTGATGAAGGCTGC 57.860 37.500 0.00 0.00 33.28 5.25
6598 10227 9.595823 AAATTGATAAATTTCTGATGAAGGCTG 57.404 29.630 0.00 0.00 33.28 4.85
6599 10228 9.813446 GAAATTGATAAATTTCTGATGAAGGCT 57.187 29.630 17.83 0.00 42.75 4.58
6600 10229 9.590451 TGAAATTGATAAATTTCTGATGAAGGC 57.410 29.630 23.18 1.08 45.01 4.35
6606 10235 9.932207 TGCAAGTGAAATTGATAAATTTCTGAT 57.068 25.926 23.18 10.60 45.01 2.90
6607 10236 9.761504 TTGCAAGTGAAATTGATAAATTTCTGA 57.238 25.926 23.18 6.93 45.01 3.27
6609 10238 8.715088 GCTTGCAAGTGAAATTGATAAATTTCT 58.285 29.630 26.55 6.93 45.01 2.52
6610 10239 7.685304 CGCTTGCAAGTGAAATTGATAAATTTC 59.315 33.333 31.64 18.16 44.99 2.17
6611 10240 7.384660 TCGCTTGCAAGTGAAATTGATAAATTT 59.615 29.630 34.34 0.00 42.13 1.82
6612 10241 6.867816 TCGCTTGCAAGTGAAATTGATAAATT 59.132 30.769 34.34 0.00 42.13 1.82
6613 10242 6.389091 TCGCTTGCAAGTGAAATTGATAAAT 58.611 32.000 34.34 0.00 42.13 1.40
6614 10243 5.767269 TCGCTTGCAAGTGAAATTGATAAA 58.233 33.333 34.34 12.57 42.13 1.40
6615 10244 5.369685 TCGCTTGCAAGTGAAATTGATAA 57.630 34.783 34.34 13.26 42.13 1.75
6617 10246 3.921119 TCGCTTGCAAGTGAAATTGAT 57.079 38.095 34.34 0.00 42.13 2.57
6624 10253 1.092921 AACGGTTCGCTTGCAAGTGA 61.093 50.000 33.20 33.20 43.26 3.41
6630 10259 4.700365 GGCCAACGGTTCGCTTGC 62.700 66.667 10.22 0.00 0.00 4.01
6635 10264 4.020378 CAACGGGCCAACGGTTCG 62.020 66.667 4.39 0.00 40.20 3.95
6636 10265 4.337060 GCAACGGGCCAACGGTTC 62.337 66.667 4.39 0.00 40.20 3.62
6760 10489 7.667043 TCACTGTAATTGGTGTCTGAATTAC 57.333 36.000 0.00 0.00 41.99 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.