Multiple sequence alignment - TraesCS3A01G163500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G163500 chr3A 100.000 2507 0 0 1 2507 166148246 166150752 0.000000e+00 4630
1 TraesCS3A01G163500 chr3A 86.849 365 42 5 2142 2502 719808060 719808422 1.080000e-108 403
2 TraesCS3A01G163500 chr3A 96.992 133 4 0 1964 2096 166155167 166155299 9.020000e-55 224
3 TraesCS3A01G163500 chr3B 94.000 1000 41 10 976 1963 215011801 215012793 0.000000e+00 1496
4 TraesCS3A01G163500 chr3B 88.557 804 78 10 188 988 136792008 136791216 0.000000e+00 963
5 TraesCS3A01G163500 chr3D 94.105 950 37 10 982 1919 147461778 147460836 0.000000e+00 1426
6 TraesCS3A01G163500 chr3D 89.513 801 76 7 188 984 468757255 468758051 0.000000e+00 1007
7 TraesCS3A01G163500 chr3D 85.135 370 49 5 2137 2502 435323630 435323997 8.470000e-100 374
8 TraesCS3A01G163500 chr1D 91.283 803 63 7 188 986 389543537 389542738 0.000000e+00 1088
9 TraesCS3A01G163500 chr4D 90.886 801 67 5 188 984 362724218 362723420 0.000000e+00 1070
10 TraesCS3A01G163500 chr4D 88.586 806 82 9 188 988 37524397 37525197 0.000000e+00 970
11 TraesCS3A01G163500 chr2D 90.512 801 69 6 188 984 650462738 650461941 0.000000e+00 1051
12 TraesCS3A01G163500 chr7D 89.850 798 79 2 188 984 203331699 203332495 0.000000e+00 1024
13 TraesCS3A01G163500 chr7D 87.126 334 41 2 2161 2493 186833389 186833721 6.550000e-101 377
14 TraesCS3A01G163500 chr7A 89.737 799 75 3 188 984 620843014 620842221 0.000000e+00 1014
15 TraesCS3A01G163500 chr7A 87.268 809 94 6 188 993 565690125 565689323 0.000000e+00 915
16 TraesCS3A01G163500 chr4A 96.691 544 18 0 1964 2507 66510358 66510901 0.000000e+00 905
17 TraesCS3A01G163500 chr4A 100.000 188 0 0 1 188 2311230 2311417 5.130000e-92 348
18 TraesCS3A01G163500 chr4A 100.000 188 0 0 1 188 571542321 571542508 5.130000e-92 348
19 TraesCS3A01G163500 chr4A 99.479 192 0 1 1 192 571552114 571552304 5.130000e-92 348
20 TraesCS3A01G163500 chr4A 98.462 195 3 0 3 197 539837316 539837122 6.640000e-91 344
21 TraesCS3A01G163500 chr4A 95.567 203 9 0 1964 2166 66515316 66515518 2.400000e-85 326
22 TraesCS3A01G163500 chr1A 95.956 544 22 0 1964 2507 32280141 32279598 0.000000e+00 883
23 TraesCS3A01G163500 chr1A 95.098 204 10 0 1964 2167 32275185 32274982 3.110000e-84 322
24 TraesCS3A01G163500 chr5B 87.069 348 43 2 2161 2507 529622556 529622210 2.340000e-105 392
25 TraesCS3A01G163500 chr6A 85.014 367 45 9 2142 2502 84046513 84046151 5.100000e-97 364
26 TraesCS3A01G163500 chrUn 100.000 188 0 0 1 188 272804266 272804453 5.130000e-92 348
27 TraesCS3A01G163500 chrUn 100.000 187 0 0 1 187 362060177 362060363 1.850000e-91 346
28 TraesCS3A01G163500 chrUn 83.424 368 47 11 2142 2502 428164289 428163929 1.860000e-86 329
29 TraesCS3A01G163500 chr6B 100.000 188 0 0 1 188 321138371 321138558 5.130000e-92 348
30 TraesCS3A01G163500 chr6B 100.000 187 0 0 1 187 321147400 321147586 1.850000e-91 346
31 TraesCS3A01G163500 chr4B 98.454 194 3 0 3 196 278178603 278178410 2.390000e-90 342
32 TraesCS3A01G163500 chr5D 82.469 405 51 13 2111 2502 541367025 541366628 1.110000e-88 337


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G163500 chr3A 166148246 166150752 2506 False 4630 4630 100.000 1 2507 1 chr3A.!!$F1 2506
1 TraesCS3A01G163500 chr3B 215011801 215012793 992 False 1496 1496 94.000 976 1963 1 chr3B.!!$F1 987
2 TraesCS3A01G163500 chr3B 136791216 136792008 792 True 963 963 88.557 188 988 1 chr3B.!!$R1 800
3 TraesCS3A01G163500 chr3D 147460836 147461778 942 True 1426 1426 94.105 982 1919 1 chr3D.!!$R1 937
4 TraesCS3A01G163500 chr3D 468757255 468758051 796 False 1007 1007 89.513 188 984 1 chr3D.!!$F2 796
5 TraesCS3A01G163500 chr1D 389542738 389543537 799 True 1088 1088 91.283 188 986 1 chr1D.!!$R1 798
6 TraesCS3A01G163500 chr4D 362723420 362724218 798 True 1070 1070 90.886 188 984 1 chr4D.!!$R1 796
7 TraesCS3A01G163500 chr4D 37524397 37525197 800 False 970 970 88.586 188 988 1 chr4D.!!$F1 800
8 TraesCS3A01G163500 chr2D 650461941 650462738 797 True 1051 1051 90.512 188 984 1 chr2D.!!$R1 796
9 TraesCS3A01G163500 chr7D 203331699 203332495 796 False 1024 1024 89.850 188 984 1 chr7D.!!$F2 796
10 TraesCS3A01G163500 chr7A 620842221 620843014 793 True 1014 1014 89.737 188 984 1 chr7A.!!$R2 796
11 TraesCS3A01G163500 chr7A 565689323 565690125 802 True 915 915 87.268 188 993 1 chr7A.!!$R1 805
12 TraesCS3A01G163500 chr4A 66510358 66510901 543 False 905 905 96.691 1964 2507 1 chr4A.!!$F2 543
13 TraesCS3A01G163500 chr1A 32279598 32280141 543 True 883 883 95.956 1964 2507 1 chr1A.!!$R2 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
354 355 0.033504 ACATCGAGGCTGACAACGTT 59.966 50.0 0.0 0.0 0.0 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2266 2291 0.463833 GGGGATGAATCGGTGGTGAC 60.464 60.0 0.0 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.661563 AATATTCTGCACATGATGAACATTTTT 57.338 25.926 0.00 0.00 37.07 1.94
27 28 6.772770 TTCTGCACATGATGAACATTTTTG 57.227 33.333 0.00 0.00 37.07 2.44
28 29 5.845103 TCTGCACATGATGAACATTTTTGT 58.155 33.333 0.00 0.00 37.07 2.83
29 30 6.282167 TCTGCACATGATGAACATTTTTGTT 58.718 32.000 0.00 0.00 37.07 2.83
30 31 6.762187 TCTGCACATGATGAACATTTTTGTTT 59.238 30.769 0.00 0.00 37.07 2.83
31 32 7.280428 TCTGCACATGATGAACATTTTTGTTTT 59.720 29.630 0.00 0.00 37.07 2.43
32 33 7.408123 TGCACATGATGAACATTTTTGTTTTC 58.592 30.769 0.00 0.00 37.07 2.29
33 34 7.065443 TGCACATGATGAACATTTTTGTTTTCA 59.935 29.630 0.00 7.45 37.07 2.69
34 35 8.071368 GCACATGATGAACATTTTTGTTTTCAT 58.929 29.630 0.00 10.15 40.57 2.57
35 36 9.376171 CACATGATGAACATTTTTGTTTTCATG 57.624 29.630 25.02 25.02 45.50 3.07
36 37 9.111613 ACATGATGAACATTTTTGTTTTCATGT 57.888 25.926 25.77 25.77 46.45 3.21
37 38 9.588774 CATGATGAACATTTTTGTTTTCATGTC 57.411 29.630 22.03 6.25 41.45 3.06
38 39 8.945481 TGATGAACATTTTTGTTTTCATGTCT 57.055 26.923 0.55 0.00 38.51 3.41
39 40 8.819015 TGATGAACATTTTTGTTTTCATGTCTG 58.181 29.630 0.55 0.00 38.51 3.51
40 41 8.945481 ATGAACATTTTTGTTTTCATGTCTGA 57.055 26.923 0.00 0.00 37.32 3.27
41 42 8.410030 TGAACATTTTTGTTTTCATGTCTGAG 57.590 30.769 0.00 0.00 30.02 3.35
42 43 6.833342 ACATTTTTGTTTTCATGTCTGAGC 57.167 33.333 0.00 0.00 31.68 4.26
43 44 6.339730 ACATTTTTGTTTTCATGTCTGAGCA 58.660 32.000 0.00 0.00 31.68 4.26
44 45 6.987992 ACATTTTTGTTTTCATGTCTGAGCAT 59.012 30.769 0.00 0.00 31.68 3.79
45 46 7.496591 ACATTTTTGTTTTCATGTCTGAGCATT 59.503 29.630 0.00 0.00 31.68 3.56
46 47 7.846644 TTTTTGTTTTCATGTCTGAGCATTT 57.153 28.000 0.00 0.00 31.68 2.32
47 48 7.846644 TTTTGTTTTCATGTCTGAGCATTTT 57.153 28.000 0.00 0.00 31.68 1.82
48 49 6.831727 TTGTTTTCATGTCTGAGCATTTTG 57.168 33.333 0.00 0.00 31.68 2.44
49 50 6.146601 TGTTTTCATGTCTGAGCATTTTGA 57.853 33.333 0.00 0.00 31.68 2.69
50 51 6.571605 TGTTTTCATGTCTGAGCATTTTGAA 58.428 32.000 0.00 0.00 31.68 2.69
51 52 7.211573 TGTTTTCATGTCTGAGCATTTTGAAT 58.788 30.769 0.00 0.00 31.68 2.57
52 53 7.711772 TGTTTTCATGTCTGAGCATTTTGAATT 59.288 29.630 0.00 0.00 31.68 2.17
53 54 8.553696 GTTTTCATGTCTGAGCATTTTGAATTT 58.446 29.630 0.00 0.00 31.68 1.82
54 55 7.878477 TTCATGTCTGAGCATTTTGAATTTC 57.122 32.000 0.00 0.00 31.68 2.17
55 56 6.983984 TCATGTCTGAGCATTTTGAATTTCA 58.016 32.000 0.00 0.00 0.00 2.69
56 57 7.088272 TCATGTCTGAGCATTTTGAATTTCAG 58.912 34.615 0.00 0.00 34.76 3.02
57 58 6.638096 TGTCTGAGCATTTTGAATTTCAGA 57.362 33.333 0.00 9.08 38.84 3.27
59 60 6.638096 TCTGAGCATTTTGAATTTCAGACA 57.362 33.333 0.00 0.00 36.93 3.41
60 61 7.041635 TCTGAGCATTTTGAATTTCAGACAA 57.958 32.000 0.00 0.00 36.93 3.18
61 62 7.490840 TCTGAGCATTTTGAATTTCAGACAAA 58.509 30.769 0.00 0.00 36.93 2.83
62 63 7.980662 TCTGAGCATTTTGAATTTCAGACAAAA 59.019 29.630 0.00 0.00 43.91 2.44
64 65 9.111613 TGAGCATTTTGAATTTCAGACAAAATT 57.888 25.926 12.31 0.00 45.55 1.82
65 66 9.940166 GAGCATTTTGAATTTCAGACAAAATTT 57.060 25.926 12.31 6.34 45.55 1.82
66 67 9.724839 AGCATTTTGAATTTCAGACAAAATTTG 57.275 25.926 3.89 3.89 45.55 2.32
67 68 9.719279 GCATTTTGAATTTCAGACAAAATTTGA 57.281 25.926 13.19 0.00 45.55 2.69
100 101 9.987272 ATTCAACTGGAATTTAAAAGAGAAAGG 57.013 29.630 0.00 0.00 43.76 3.11
101 102 8.760980 TCAACTGGAATTTAAAAGAGAAAGGA 57.239 30.769 0.00 0.00 0.00 3.36
102 103 8.850156 TCAACTGGAATTTAAAAGAGAAAGGAG 58.150 33.333 0.00 0.00 0.00 3.69
103 104 8.850156 CAACTGGAATTTAAAAGAGAAAGGAGA 58.150 33.333 0.00 0.00 0.00 3.71
104 105 8.397575 ACTGGAATTTAAAAGAGAAAGGAGAC 57.602 34.615 0.00 0.00 0.00 3.36
105 106 7.998964 ACTGGAATTTAAAAGAGAAAGGAGACA 59.001 33.333 0.00 0.00 0.00 3.41
106 107 8.760980 TGGAATTTAAAAGAGAAAGGAGACAA 57.239 30.769 0.00 0.00 0.00 3.18
107 108 9.367160 TGGAATTTAAAAGAGAAAGGAGACAAT 57.633 29.630 0.00 0.00 0.00 2.71
115 116 9.745018 AAAAGAGAAAGGAGACAATTATGATCA 57.255 29.630 0.00 0.00 0.00 2.92
116 117 8.961294 AAGAGAAAGGAGACAATTATGATCAG 57.039 34.615 0.09 0.00 0.00 2.90
117 118 7.507829 AGAGAAAGGAGACAATTATGATCAGG 58.492 38.462 0.09 0.00 0.00 3.86
118 119 7.346698 AGAGAAAGGAGACAATTATGATCAGGA 59.653 37.037 0.09 0.00 0.00 3.86
119 120 7.865820 AGAAAGGAGACAATTATGATCAGGAA 58.134 34.615 0.09 0.00 0.00 3.36
120 121 7.772757 AGAAAGGAGACAATTATGATCAGGAAC 59.227 37.037 0.09 0.00 0.00 3.62
121 122 6.566079 AGGAGACAATTATGATCAGGAACA 57.434 37.500 0.09 0.00 0.00 3.18
122 123 7.146715 AGGAGACAATTATGATCAGGAACAT 57.853 36.000 0.09 0.00 0.00 2.71
123 124 6.996879 AGGAGACAATTATGATCAGGAACATG 59.003 38.462 0.09 4.30 0.00 3.21
124 125 6.769822 GGAGACAATTATGATCAGGAACATGT 59.230 38.462 0.09 7.22 0.00 3.21
125 126 7.284034 GGAGACAATTATGATCAGGAACATGTT 59.716 37.037 11.78 11.78 0.00 2.71
126 127 8.585471 AGACAATTATGATCAGGAACATGTTT 57.415 30.769 13.36 0.00 0.00 2.83
127 128 9.685276 AGACAATTATGATCAGGAACATGTTTA 57.315 29.630 13.36 0.00 0.00 2.01
128 129 9.941664 GACAATTATGATCAGGAACATGTTTAG 57.058 33.333 13.36 6.07 0.00 1.85
129 130 8.408601 ACAATTATGATCAGGAACATGTTTAGC 58.591 33.333 13.36 0.00 0.00 3.09
130 131 8.407832 CAATTATGATCAGGAACATGTTTAGCA 58.592 33.333 13.36 8.35 0.00 3.49
131 132 7.936496 TTATGATCAGGAACATGTTTAGCAA 57.064 32.000 13.36 0.00 0.00 3.91
132 133 6.839124 ATGATCAGGAACATGTTTAGCAAA 57.161 33.333 13.36 0.00 0.00 3.68
133 134 6.647334 TGATCAGGAACATGTTTAGCAAAA 57.353 33.333 13.36 0.00 0.00 2.44
134 135 7.048629 TGATCAGGAACATGTTTAGCAAAAA 57.951 32.000 13.36 0.00 0.00 1.94
135 136 7.147312 TGATCAGGAACATGTTTAGCAAAAAG 58.853 34.615 13.36 0.00 0.00 2.27
136 137 6.707440 TCAGGAACATGTTTAGCAAAAAGA 57.293 33.333 13.36 0.00 0.00 2.52
137 138 7.288810 TCAGGAACATGTTTAGCAAAAAGAT 57.711 32.000 13.36 0.00 0.00 2.40
138 139 7.725251 TCAGGAACATGTTTAGCAAAAAGATT 58.275 30.769 13.36 0.00 0.00 2.40
139 140 8.855110 TCAGGAACATGTTTAGCAAAAAGATTA 58.145 29.630 13.36 0.00 0.00 1.75
140 141 9.474920 CAGGAACATGTTTAGCAAAAAGATTAA 57.525 29.630 13.36 0.00 0.00 1.40
141 142 9.476202 AGGAACATGTTTAGCAAAAAGATTAAC 57.524 29.630 13.36 0.00 0.00 2.01
142 143 9.476202 GGAACATGTTTAGCAAAAAGATTAACT 57.524 29.630 13.36 0.00 0.00 2.24
148 149 9.752961 TGTTTAGCAAAAAGATTAACTTAACCC 57.247 29.630 0.00 0.00 37.93 4.11
149 150 9.199982 GTTTAGCAAAAAGATTAACTTAACCCC 57.800 33.333 0.00 0.00 37.93 4.95
150 151 6.987403 AGCAAAAAGATTAACTTAACCCCA 57.013 33.333 0.00 0.00 37.93 4.96
151 152 6.993079 AGCAAAAAGATTAACTTAACCCCAG 58.007 36.000 0.00 0.00 37.93 4.45
152 153 6.014584 AGCAAAAAGATTAACTTAACCCCAGG 60.015 38.462 0.00 0.00 37.93 4.45
153 154 6.697395 CAAAAAGATTAACTTAACCCCAGGG 58.303 40.000 0.00 0.00 37.93 4.45
154 155 4.603094 AAGATTAACTTAACCCCAGGGG 57.397 45.455 25.14 25.14 42.27 4.79
164 165 1.912971 CCCCAGGGGTTACTGTAGC 59.087 63.158 18.09 0.00 38.25 3.58
165 166 0.912487 CCCCAGGGGTTACTGTAGCA 60.912 60.000 18.09 0.00 38.25 3.49
166 167 1.213296 CCCAGGGGTTACTGTAGCAT 58.787 55.000 0.00 0.00 36.75 3.79
167 168 1.141053 CCCAGGGGTTACTGTAGCATC 59.859 57.143 0.00 0.00 36.75 3.91
168 169 1.837439 CCAGGGGTTACTGTAGCATCA 59.163 52.381 4.08 0.00 36.75 3.07
169 170 2.439507 CCAGGGGTTACTGTAGCATCAT 59.560 50.000 4.08 0.00 36.75 2.45
170 171 3.117888 CCAGGGGTTACTGTAGCATCATT 60.118 47.826 4.08 0.00 36.75 2.57
171 172 4.102524 CCAGGGGTTACTGTAGCATCATTA 59.897 45.833 4.08 0.00 36.75 1.90
172 173 5.057149 CAGGGGTTACTGTAGCATCATTAC 58.943 45.833 4.08 0.00 33.81 1.89
173 174 4.719773 AGGGGTTACTGTAGCATCATTACA 59.280 41.667 4.08 0.00 0.00 2.41
174 175 4.814771 GGGGTTACTGTAGCATCATTACAC 59.185 45.833 4.08 0.00 0.00 2.90
175 176 4.814771 GGGTTACTGTAGCATCATTACACC 59.185 45.833 4.08 0.00 0.00 4.16
176 177 4.506654 GGTTACTGTAGCATCATTACACCG 59.493 45.833 4.08 0.00 0.00 4.94
177 178 3.179443 ACTGTAGCATCATTACACCGG 57.821 47.619 0.00 0.00 0.00 5.28
178 179 2.158957 ACTGTAGCATCATTACACCGGG 60.159 50.000 6.32 0.00 0.00 5.73
179 180 1.140052 TGTAGCATCATTACACCGGGG 59.860 52.381 0.00 0.00 0.00 5.73
180 181 1.140252 GTAGCATCATTACACCGGGGT 59.860 52.381 16.91 16.91 0.00 4.95
220 221 6.127619 GCAAATGAAGCAATACCTAGACCTTT 60.128 38.462 0.00 0.00 0.00 3.11
241 242 7.678947 CTTTAAAGGAAGAAGCTTGAGATGA 57.321 36.000 2.10 0.00 0.00 2.92
277 278 2.091610 AGGAGGAAGATCGACATGGAGA 60.092 50.000 0.00 0.00 0.00 3.71
354 355 0.033504 ACATCGAGGCTGACAACGTT 59.966 50.000 0.00 0.00 0.00 3.99
406 407 0.962489 CACCAATACCGCCACCAAAA 59.038 50.000 0.00 0.00 0.00 2.44
424 425 0.838987 AACGAAGGAGGTGGCCCTTA 60.839 55.000 0.00 0.00 43.59 2.69
436 437 0.106708 GGCCCTTACGATCATGAGCA 59.893 55.000 12.15 0.00 0.00 4.26
450 451 2.768253 TGAGCATGGACTTGTCGAAT 57.232 45.000 0.00 0.00 0.00 3.34
518 520 2.509336 CGACGCCGAAGCCTGAAT 60.509 61.111 0.00 0.00 38.22 2.57
673 678 4.680237 TGCCGGCGAGGACAACTG 62.680 66.667 23.90 0.00 45.00 3.16
690 695 4.402155 ACAACTGTTCATTTTGAAGGCTGA 59.598 37.500 0.00 0.00 37.00 4.26
771 778 2.350895 CGTGATGAACTGGGGCCA 59.649 61.111 4.39 0.00 0.00 5.36
775 782 1.380302 GATGAACTGGGGCCACTGT 59.620 57.895 12.49 12.49 0.00 3.55
785 794 0.257039 GGGCCACTGTCCTGATGAAT 59.743 55.000 4.39 0.00 31.67 2.57
816 828 8.608317 GCTTGGCATTTAAAAGTTGTTTCTTTA 58.392 29.630 0.00 0.00 36.75 1.85
841 853 4.848562 AAAGATAGACGCGGACATGATA 57.151 40.909 12.47 0.00 0.00 2.15
898 910 1.079819 CCGCATCTCAGGACACGTT 60.080 57.895 0.00 0.00 0.00 3.99
900 912 0.388520 CGCATCTCAGGACACGTTCA 60.389 55.000 0.00 0.00 0.00 3.18
903 915 2.417924 GCATCTCAGGACACGTTCAGAT 60.418 50.000 0.00 0.00 0.00 2.90
905 917 4.678044 GCATCTCAGGACACGTTCAGATAA 60.678 45.833 0.00 0.00 0.00 1.75
906 918 5.595885 CATCTCAGGACACGTTCAGATAAT 58.404 41.667 0.00 0.00 0.00 1.28
909 921 5.886474 TCTCAGGACACGTTCAGATAATACT 59.114 40.000 0.00 0.00 0.00 2.12
911 923 5.886474 TCAGGACACGTTCAGATAATACTCT 59.114 40.000 0.00 0.00 0.00 3.24
916 928 7.595502 GGACACGTTCAGATAATACTCTATTGG 59.404 40.741 0.00 0.00 0.00 3.16
988 1000 1.122632 TGGTGGAGTTGGCCTAACGA 61.123 55.000 3.32 0.00 44.15 3.85
994 1006 0.696501 AGTTGGCCTAACGACCCATT 59.303 50.000 3.32 0.00 44.15 3.16
1069 1081 2.286425 CCCTCCCCCACACCTCAT 60.286 66.667 0.00 0.00 0.00 2.90
1086 1098 3.369147 CCTCATTACTGCTCGTCAAACTG 59.631 47.826 0.00 0.00 0.00 3.16
1489 1501 1.600636 CCGGTCTTGAAGCAGGCAA 60.601 57.895 0.00 0.00 0.00 4.52
1512 1524 0.401738 CCCTCTGGCTTTGAACCTCA 59.598 55.000 0.00 0.00 0.00 3.86
1536 1548 0.661020 ATGCCGTGCCGTTAATTAGC 59.339 50.000 0.00 0.00 0.00 3.09
1539 1551 1.259770 GCCGTGCCGTTAATTAGCTAC 59.740 52.381 0.00 0.00 0.00 3.58
1540 1552 1.862827 CCGTGCCGTTAATTAGCTACC 59.137 52.381 0.00 0.00 0.00 3.18
1594 1606 7.348956 TGTTTCGTGTTTATTATCGCCATATG 58.651 34.615 0.00 0.00 0.00 1.78
1598 1610 6.480651 TCGTGTTTATTATCGCCATATGTGTT 59.519 34.615 1.24 0.00 0.00 3.32
1612 1624 2.418368 TGTGTTCCCATGCCATCTAC 57.582 50.000 0.00 0.00 0.00 2.59
1613 1625 1.632920 TGTGTTCCCATGCCATCTACA 59.367 47.619 0.00 0.00 0.00 2.74
1614 1626 2.292267 GTGTTCCCATGCCATCTACAG 58.708 52.381 0.00 0.00 0.00 2.74
1615 1627 1.312815 GTTCCCATGCCATCTACAGC 58.687 55.000 0.00 0.00 0.00 4.40
1633 1645 7.575505 TCTACAGCTAGTATTGTAGACTTCCT 58.424 38.462 20.39 0.00 46.47 3.36
1638 1650 8.035394 CAGCTAGTATTGTAGACTTCCTTTTGA 58.965 37.037 0.00 0.00 0.00 2.69
1661 1673 6.093357 TGAGAAACAAAAATGGCAAAGAAACC 59.907 34.615 0.00 0.00 0.00 3.27
1720 1744 8.503196 ACAGACTTCCATTTTGTTTTTGTTTTC 58.497 29.630 0.00 0.00 0.00 2.29
1806 1830 3.883489 GACCCAATTGTCTATAGGTTGGC 59.117 47.826 4.43 5.81 38.35 4.52
1909 1934 6.868339 GGCAAGTCAATAATTACTGCAAAGTT 59.132 34.615 0.00 0.00 0.00 2.66
1925 1950 4.747605 GCAAAGTTTTTCTTTTATCCGGCA 59.252 37.500 0.00 0.00 42.95 5.69
1926 1951 5.235401 GCAAAGTTTTTCTTTTATCCGGCAA 59.765 36.000 0.00 0.00 42.95 4.52
1936 1961 4.768130 TTTATCCGGCAAAACATTTCGA 57.232 36.364 0.00 0.00 0.00 3.71
2011 2036 7.823745 AGGAAAGTTGTTCATGTTGTAATCT 57.176 32.000 0.00 0.00 0.00 2.40
2059 2084 3.510360 TCCTTCTCCTTTACCGACTCTTG 59.490 47.826 0.00 0.00 0.00 3.02
2098 2123 4.219944 TCGATCTACAACTTGTAAGCCACT 59.780 41.667 3.26 0.00 31.67 4.00
2162 2187 8.833493 GGGTTATACGCTTACATCATAAGTTTT 58.167 33.333 0.00 0.00 0.00 2.43
2225 2250 3.659183 AGCTACAAGGAAAGCCATGAT 57.341 42.857 0.00 0.00 39.64 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.093970 CAAAAATGTTCATCATGTGCAGAATAT 57.906 29.630 0.00 0.00 36.81 1.28
2 3 8.089597 ACAAAAATGTTCATCATGTGCAGAATA 58.910 29.630 0.00 0.00 36.81 1.75
3 4 6.932400 ACAAAAATGTTCATCATGTGCAGAAT 59.068 30.769 0.00 0.00 36.81 2.40
4 5 6.282167 ACAAAAATGTTCATCATGTGCAGAA 58.718 32.000 0.00 0.00 36.81 3.02
5 6 5.845103 ACAAAAATGTTCATCATGTGCAGA 58.155 33.333 0.00 0.00 36.81 4.26
6 7 6.533819 AACAAAAATGTTCATCATGTGCAG 57.466 33.333 0.00 0.00 36.81 4.41
7 8 6.922247 AAACAAAAATGTTCATCATGTGCA 57.078 29.167 0.00 0.00 36.81 4.57
8 9 7.408123 TGAAAACAAAAATGTTCATCATGTGC 58.592 30.769 0.00 0.00 36.81 4.57
9 10 9.376171 CATGAAAACAAAAATGTTCATCATGTG 57.624 29.630 24.40 13.58 42.78 3.21
11 12 9.588774 GACATGAAAACAAAAATGTTCATCATG 57.411 29.630 27.35 27.35 46.83 3.07
12 13 9.550406 AGACATGAAAACAAAAATGTTCATCAT 57.450 25.926 0.00 13.03 38.37 2.45
13 14 8.819015 CAGACATGAAAACAAAAATGTTCATCA 58.181 29.630 0.00 10.55 38.37 3.07
14 15 9.033481 TCAGACATGAAAACAAAAATGTTCATC 57.967 29.630 0.00 0.00 38.37 2.92
15 16 8.945481 TCAGACATGAAAACAAAAATGTTCAT 57.055 26.923 0.00 0.00 40.47 2.57
16 17 7.010367 GCTCAGACATGAAAACAAAAATGTTCA 59.990 33.333 0.00 0.00 34.23 3.18
17 18 7.010367 TGCTCAGACATGAAAACAAAAATGTTC 59.990 33.333 0.00 0.00 34.23 3.18
18 19 6.817641 TGCTCAGACATGAAAACAAAAATGTT 59.182 30.769 0.00 0.00 34.23 2.71
19 20 6.339730 TGCTCAGACATGAAAACAAAAATGT 58.660 32.000 0.00 0.00 34.23 2.71
20 21 6.831727 TGCTCAGACATGAAAACAAAAATG 57.168 33.333 0.00 0.00 34.23 2.32
21 22 8.441312 AAATGCTCAGACATGAAAACAAAAAT 57.559 26.923 0.00 0.00 34.23 1.82
22 23 7.846644 AAATGCTCAGACATGAAAACAAAAA 57.153 28.000 0.00 0.00 34.23 1.94
23 24 7.548427 TCAAAATGCTCAGACATGAAAACAAAA 59.452 29.630 0.00 0.00 34.23 2.44
24 25 7.040494 TCAAAATGCTCAGACATGAAAACAAA 58.960 30.769 0.00 0.00 34.23 2.83
25 26 6.571605 TCAAAATGCTCAGACATGAAAACAA 58.428 32.000 0.00 0.00 34.23 2.83
26 27 6.146601 TCAAAATGCTCAGACATGAAAACA 57.853 33.333 0.00 0.00 34.23 2.83
27 28 7.647907 ATTCAAAATGCTCAGACATGAAAAC 57.352 32.000 0.00 0.00 34.23 2.43
28 29 8.665643 AAATTCAAAATGCTCAGACATGAAAA 57.334 26.923 0.00 0.00 34.23 2.29
29 30 7.927092 TGAAATTCAAAATGCTCAGACATGAAA 59.073 29.630 0.00 0.00 34.23 2.69
30 31 7.435305 TGAAATTCAAAATGCTCAGACATGAA 58.565 30.769 0.00 0.00 34.23 2.57
31 32 6.983984 TGAAATTCAAAATGCTCAGACATGA 58.016 32.000 0.00 0.00 0.00 3.07
32 33 7.088272 TCTGAAATTCAAAATGCTCAGACATG 58.912 34.615 0.00 0.00 35.56 3.21
33 34 7.223260 TCTGAAATTCAAAATGCTCAGACAT 57.777 32.000 0.00 0.00 35.56 3.06
34 35 6.638096 TCTGAAATTCAAAATGCTCAGACA 57.362 33.333 0.00 0.00 35.56 3.41
36 37 6.638096 TGTCTGAAATTCAAAATGCTCAGA 57.362 33.333 0.00 9.18 37.54 3.27
37 38 7.703298 TTTGTCTGAAATTCAAAATGCTCAG 57.297 32.000 0.00 0.00 33.21 3.35
38 39 8.665643 ATTTTGTCTGAAATTCAAAATGCTCA 57.334 26.923 12.92 0.00 44.53 4.26
39 40 9.940166 AAATTTTGTCTGAAATTCAAAATGCTC 57.060 25.926 13.89 0.00 45.07 4.26
40 41 9.724839 CAAATTTTGTCTGAAATTCAAAATGCT 57.275 25.926 13.89 5.80 45.07 3.79
41 42 9.719279 TCAAATTTTGTCTGAAATTCAAAATGC 57.281 25.926 13.89 0.00 45.07 3.56
74 75 9.987272 CCTTTCTCTTTTAAATTCCAGTTGAAT 57.013 29.630 0.00 0.00 45.75 2.57
75 76 9.196139 TCCTTTCTCTTTTAAATTCCAGTTGAA 57.804 29.630 0.00 0.00 37.38 2.69
76 77 8.760980 TCCTTTCTCTTTTAAATTCCAGTTGA 57.239 30.769 0.00 0.00 0.00 3.18
77 78 8.850156 TCTCCTTTCTCTTTTAAATTCCAGTTG 58.150 33.333 0.00 0.00 0.00 3.16
78 79 8.851145 GTCTCCTTTCTCTTTTAAATTCCAGTT 58.149 33.333 0.00 0.00 0.00 3.16
79 80 7.998964 TGTCTCCTTTCTCTTTTAAATTCCAGT 59.001 33.333 0.00 0.00 0.00 4.00
80 81 8.396272 TGTCTCCTTTCTCTTTTAAATTCCAG 57.604 34.615 0.00 0.00 0.00 3.86
81 82 8.760980 TTGTCTCCTTTCTCTTTTAAATTCCA 57.239 30.769 0.00 0.00 0.00 3.53
89 90 9.745018 TGATCATAATTGTCTCCTTTCTCTTTT 57.255 29.630 0.00 0.00 0.00 2.27
90 91 9.393512 CTGATCATAATTGTCTCCTTTCTCTTT 57.606 33.333 0.00 0.00 0.00 2.52
91 92 7.992033 CCTGATCATAATTGTCTCCTTTCTCTT 59.008 37.037 0.00 0.00 0.00 2.85
92 93 7.346698 TCCTGATCATAATTGTCTCCTTTCTCT 59.653 37.037 0.00 0.00 0.00 3.10
93 94 7.504403 TCCTGATCATAATTGTCTCCTTTCTC 58.496 38.462 0.00 0.00 0.00 2.87
94 95 7.443302 TCCTGATCATAATTGTCTCCTTTCT 57.557 36.000 0.00 0.00 0.00 2.52
95 96 7.554118 TGTTCCTGATCATAATTGTCTCCTTTC 59.446 37.037 0.00 0.00 0.00 2.62
96 97 7.405292 TGTTCCTGATCATAATTGTCTCCTTT 58.595 34.615 0.00 0.00 0.00 3.11
97 98 6.962182 TGTTCCTGATCATAATTGTCTCCTT 58.038 36.000 0.00 0.00 0.00 3.36
98 99 6.566079 TGTTCCTGATCATAATTGTCTCCT 57.434 37.500 0.00 0.00 0.00 3.69
99 100 6.769822 ACATGTTCCTGATCATAATTGTCTCC 59.230 38.462 0.00 0.00 0.00 3.71
100 101 7.798596 ACATGTTCCTGATCATAATTGTCTC 57.201 36.000 0.00 0.00 0.00 3.36
101 102 8.585471 AAACATGTTCCTGATCATAATTGTCT 57.415 30.769 12.39 0.00 0.00 3.41
102 103 9.941664 CTAAACATGTTCCTGATCATAATTGTC 57.058 33.333 12.39 0.00 0.00 3.18
103 104 8.408601 GCTAAACATGTTCCTGATCATAATTGT 58.591 33.333 12.39 0.62 0.00 2.71
104 105 8.407832 TGCTAAACATGTTCCTGATCATAATTG 58.592 33.333 12.39 0.04 0.00 2.32
105 106 8.523915 TGCTAAACATGTTCCTGATCATAATT 57.476 30.769 12.39 0.00 0.00 1.40
106 107 8.523915 TTGCTAAACATGTTCCTGATCATAAT 57.476 30.769 12.39 0.00 0.00 1.28
107 108 7.936496 TTGCTAAACATGTTCCTGATCATAA 57.064 32.000 12.39 0.00 0.00 1.90
108 109 7.936496 TTTGCTAAACATGTTCCTGATCATA 57.064 32.000 12.39 0.00 0.00 2.15
109 110 6.839124 TTTGCTAAACATGTTCCTGATCAT 57.161 33.333 12.39 0.00 0.00 2.45
110 111 6.647334 TTTTGCTAAACATGTTCCTGATCA 57.353 33.333 12.39 0.00 0.00 2.92
111 112 7.370383 TCTTTTTGCTAAACATGTTCCTGATC 58.630 34.615 12.39 0.00 0.00 2.92
112 113 7.288810 TCTTTTTGCTAAACATGTTCCTGAT 57.711 32.000 12.39 0.00 0.00 2.90
113 114 6.707440 TCTTTTTGCTAAACATGTTCCTGA 57.293 33.333 12.39 0.00 0.00 3.86
114 115 7.951530 AATCTTTTTGCTAAACATGTTCCTG 57.048 32.000 12.39 6.33 0.00 3.86
115 116 9.476202 GTTAATCTTTTTGCTAAACATGTTCCT 57.524 29.630 12.39 0.00 0.00 3.36
116 117 9.476202 AGTTAATCTTTTTGCTAAACATGTTCC 57.524 29.630 12.39 4.33 0.00 3.62
122 123 9.752961 GGGTTAAGTTAATCTTTTTGCTAAACA 57.247 29.630 5.88 0.00 37.56 2.83
123 124 9.199982 GGGGTTAAGTTAATCTTTTTGCTAAAC 57.800 33.333 5.88 0.00 37.56 2.01
124 125 8.925338 TGGGGTTAAGTTAATCTTTTTGCTAAA 58.075 29.630 5.88 0.00 37.56 1.85
125 126 8.480133 TGGGGTTAAGTTAATCTTTTTGCTAA 57.520 30.769 5.88 0.00 37.56 3.09
126 127 7.177744 CCTGGGGTTAAGTTAATCTTTTTGCTA 59.822 37.037 5.88 0.00 37.56 3.49
127 128 6.014584 CCTGGGGTTAAGTTAATCTTTTTGCT 60.015 38.462 5.88 0.00 37.56 3.91
128 129 6.163476 CCTGGGGTTAAGTTAATCTTTTTGC 58.837 40.000 5.88 0.00 37.56 3.68
129 130 6.295632 CCCCTGGGGTTAAGTTAATCTTTTTG 60.296 42.308 24.54 0.00 38.25 2.44
130 131 5.783360 CCCCTGGGGTTAAGTTAATCTTTTT 59.217 40.000 24.54 0.00 38.25 1.94
131 132 5.338632 CCCCTGGGGTTAAGTTAATCTTTT 58.661 41.667 24.54 0.00 38.25 2.27
132 133 4.942944 CCCCTGGGGTTAAGTTAATCTTT 58.057 43.478 24.54 0.00 38.25 2.52
133 134 4.603094 CCCCTGGGGTTAAGTTAATCTT 57.397 45.455 24.54 0.00 38.25 2.40
147 148 1.141053 GATGCTACAGTAACCCCTGGG 59.859 57.143 5.50 5.50 36.75 4.45
148 149 1.837439 TGATGCTACAGTAACCCCTGG 59.163 52.381 0.00 0.00 36.75 4.45
149 150 3.845781 ATGATGCTACAGTAACCCCTG 57.154 47.619 0.00 0.00 38.45 4.45
150 151 4.719773 TGTAATGATGCTACAGTAACCCCT 59.280 41.667 0.00 0.00 0.00 4.79
151 152 4.814771 GTGTAATGATGCTACAGTAACCCC 59.185 45.833 0.00 0.00 30.04 4.95
152 153 4.814771 GGTGTAATGATGCTACAGTAACCC 59.185 45.833 0.00 0.00 30.04 4.11
153 154 4.506654 CGGTGTAATGATGCTACAGTAACC 59.493 45.833 0.00 0.00 30.04 2.85
154 155 4.506654 CCGGTGTAATGATGCTACAGTAAC 59.493 45.833 0.00 0.00 30.04 2.50
155 156 4.442332 CCCGGTGTAATGATGCTACAGTAA 60.442 45.833 0.00 0.00 30.04 2.24
156 157 3.069016 CCCGGTGTAATGATGCTACAGTA 59.931 47.826 0.00 0.00 30.04 2.74
157 158 2.158957 CCCGGTGTAATGATGCTACAGT 60.159 50.000 0.00 0.00 30.04 3.55
158 159 2.483876 CCCGGTGTAATGATGCTACAG 58.516 52.381 0.00 0.00 30.04 2.74
159 160 1.140052 CCCCGGTGTAATGATGCTACA 59.860 52.381 0.00 0.00 0.00 2.74
160 161 1.140252 ACCCCGGTGTAATGATGCTAC 59.860 52.381 0.00 0.00 0.00 3.58
161 162 1.140052 CACCCCGGTGTAATGATGCTA 59.860 52.381 5.66 0.00 40.91 3.49
162 163 0.107214 CACCCCGGTGTAATGATGCT 60.107 55.000 5.66 0.00 40.91 3.79
163 164 2.404083 CACCCCGGTGTAATGATGC 58.596 57.895 5.66 0.00 40.91 3.91
173 174 0.109153 GTCCTTTGTAACACCCCGGT 59.891 55.000 0.00 0.00 0.00 5.28
174 175 0.952010 CGTCCTTTGTAACACCCCGG 60.952 60.000 0.00 0.00 0.00 5.73
175 176 0.033781 TCGTCCTTTGTAACACCCCG 59.966 55.000 0.00 0.00 0.00 5.73
176 177 1.804601 CTCGTCCTTTGTAACACCCC 58.195 55.000 0.00 0.00 0.00 4.95
177 178 1.154197 GCTCGTCCTTTGTAACACCC 58.846 55.000 0.00 0.00 0.00 4.61
178 179 1.873698 TGCTCGTCCTTTGTAACACC 58.126 50.000 0.00 0.00 0.00 4.16
179 180 3.955771 TTTGCTCGTCCTTTGTAACAC 57.044 42.857 0.00 0.00 0.00 3.32
180 181 4.130857 TCATTTGCTCGTCCTTTGTAACA 58.869 39.130 0.00 0.00 0.00 2.41
181 182 4.742438 TCATTTGCTCGTCCTTTGTAAC 57.258 40.909 0.00 0.00 0.00 2.50
182 183 4.320202 GCTTCATTTGCTCGTCCTTTGTAA 60.320 41.667 0.00 0.00 0.00 2.41
183 184 3.188460 GCTTCATTTGCTCGTCCTTTGTA 59.812 43.478 0.00 0.00 0.00 2.41
184 185 2.030805 GCTTCATTTGCTCGTCCTTTGT 60.031 45.455 0.00 0.00 0.00 2.83
185 186 2.030893 TGCTTCATTTGCTCGTCCTTTG 60.031 45.455 0.00 0.00 0.00 2.77
186 187 2.229792 TGCTTCATTTGCTCGTCCTTT 58.770 42.857 0.00 0.00 0.00 3.11
220 221 6.013379 TCCTTCATCTCAAGCTTCTTCCTTTA 60.013 38.462 0.00 0.00 0.00 1.85
241 242 3.721706 CCTCTTGGCCGCCTCCTT 61.722 66.667 11.61 0.00 0.00 3.36
424 425 2.093288 ACAAGTCCATGCTCATGATCGT 60.093 45.455 11.17 0.00 41.20 3.73
436 437 3.068165 TCGCTCATATTCGACAAGTCCAT 59.932 43.478 0.00 0.00 0.00 3.41
450 451 1.309950 CCCTCGTCTTCTCGCTCATA 58.690 55.000 0.00 0.00 0.00 2.15
673 678 4.202050 ACACAGTCAGCCTTCAAAATGAAC 60.202 41.667 0.00 0.00 32.21 3.18
719 726 1.226974 CGGCCTACACGTCCATCAG 60.227 63.158 0.00 0.00 0.00 2.90
751 758 2.350895 CCCCAGTTCATCACGCCA 59.649 61.111 0.00 0.00 0.00 5.69
771 778 3.118531 AGCCCTAATTCATCAGGACAGT 58.881 45.455 0.00 0.00 33.42 3.55
775 782 2.423373 GCCAAGCCCTAATTCATCAGGA 60.423 50.000 0.00 0.00 33.42 3.86
785 794 5.071115 ACAACTTTTAAATGCCAAGCCCTAA 59.929 36.000 1.19 0.00 0.00 2.69
818 830 3.857052 TCATGTCCGCGTCTATCTTTTT 58.143 40.909 4.92 0.00 0.00 1.94
819 831 3.520290 TCATGTCCGCGTCTATCTTTT 57.480 42.857 4.92 0.00 0.00 2.27
823 835 2.159366 CCCTATCATGTCCGCGTCTATC 60.159 54.545 4.92 0.00 0.00 2.08
837 849 0.813610 CGCATCCGTTTGCCCTATCA 60.814 55.000 1.70 0.00 39.52 2.15
841 853 4.344865 ACCGCATCCGTTTGCCCT 62.345 61.111 1.70 0.00 39.52 5.19
921 933 3.772572 TGTCCGGATTCTGTCTATTTGGA 59.227 43.478 7.81 0.00 0.00 3.53
965 977 1.057275 TAGGCCAACTCCACCACACA 61.057 55.000 5.01 0.00 0.00 3.72
1069 1081 2.800544 GCTTCAGTTTGACGAGCAGTAA 59.199 45.455 0.00 0.00 33.68 2.24
1208 1220 2.594303 CCACCACAAGCGGCTTCA 60.594 61.111 13.24 0.00 0.00 3.02
1348 1360 3.365265 GCTGTTGTCCTTGGGCCG 61.365 66.667 0.00 0.00 0.00 6.13
1536 1548 3.764434 ACACATATATGGCGAGAGGGTAG 59.236 47.826 16.96 0.00 0.00 3.18
1539 1551 2.932622 GCACACATATATGGCGAGAGGG 60.933 54.545 16.96 2.35 0.00 4.30
1540 1552 2.341257 GCACACATATATGGCGAGAGG 58.659 52.381 16.96 1.06 0.00 3.69
1598 1610 1.973515 CTAGCTGTAGATGGCATGGGA 59.026 52.381 3.81 0.00 0.00 4.37
1612 1624 8.035394 TCAAAAGGAAGTCTACAATACTAGCTG 58.965 37.037 0.00 0.00 0.00 4.24
1613 1625 8.135382 TCAAAAGGAAGTCTACAATACTAGCT 57.865 34.615 0.00 0.00 0.00 3.32
1614 1626 8.251721 TCTCAAAAGGAAGTCTACAATACTAGC 58.748 37.037 0.00 0.00 0.00 3.42
1638 1650 5.064579 CGGTTTCTTTGCCATTTTTGTTTCT 59.935 36.000 0.00 0.00 0.00 2.52
1661 1673 6.954944 TCAAGTCCTTTTATGAACAAACTCG 58.045 36.000 0.00 0.00 0.00 4.18
1741 1765 8.534778 CAAAGTTTGAGAGCTTACAAAATTCAC 58.465 33.333 22.25 11.97 41.19 3.18
1806 1830 4.505556 CGATTGACACATACATGACCTCAG 59.494 45.833 0.00 0.00 0.00 3.35
1863 1888 4.957759 CGGAAAACGGTATTGATTCCTT 57.042 40.909 0.00 0.00 37.89 3.36
1909 1934 7.306866 CGAAATGTTTTGCCGGATAAAAGAAAA 60.307 33.333 5.05 0.00 0.00 2.29
1925 1950 6.944234 ACTCTCTCCTTTTCGAAATGTTTT 57.056 33.333 12.12 0.00 0.00 2.43
1926 1951 6.542370 TGAACTCTCTCCTTTTCGAAATGTTT 59.458 34.615 12.12 0.00 0.00 2.83
1936 1961 5.131142 TCAAACTCCTGAACTCTCTCCTTTT 59.869 40.000 0.00 0.00 0.00 2.27
2032 2057 4.591924 AGTCGGTAAAGGAGAAGGAGAAAA 59.408 41.667 0.00 0.00 0.00 2.29
2098 2123 9.445786 CGCACGTGTATATATATCAATGATGTA 57.554 33.333 18.38 3.94 0.00 2.29
2149 2174 8.806429 TGATGACCATGTAAAACTTATGATGT 57.194 30.769 0.00 0.00 0.00 3.06
2162 2187 3.037851 AGAGGCTCTGATGACCATGTA 57.962 47.619 17.96 0.00 0.00 2.29
2266 2291 0.463833 GGGGATGAATCGGTGGTGAC 60.464 60.000 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.