Multiple sequence alignment - TraesCS3A01G162800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G162800 chr3A 100.000 7195 0 0 1 7195 164927890 164935084 0.000000e+00 13287.0
1 TraesCS3A01G162800 chr3A 96.565 262 9 0 3884 4145 474832822 474832561 1.110000e-117 435.0
2 TraesCS3A01G162800 chr3A 84.454 238 26 9 6330 6565 616496728 616496500 2.610000e-54 224.0
3 TraesCS3A01G162800 chr7A 96.313 1519 30 12 2240 3734 664105095 664106611 0.000000e+00 2471.0
4 TraesCS3A01G162800 chr7A 96.100 1513 41 7 2241 3736 673413356 673411845 0.000000e+00 2451.0
5 TraesCS3A01G162800 chr7A 96.082 1506 38 6 2249 3734 529440254 529441758 0.000000e+00 2435.0
6 TraesCS3A01G162800 chr7A 95.955 1508 34 11 2249 3734 706308348 706306846 0.000000e+00 2422.0
7 TraesCS3A01G162800 chr7A 95.856 1496 43 7 2254 3732 603020002 603018509 0.000000e+00 2401.0
8 TraesCS3A01G162800 chr7A 97.710 262 6 0 3884 4145 115869949 115869688 1.100000e-122 451.0
9 TraesCS3A01G162800 chr7A 95.817 263 11 0 3884 4146 653720942 653720680 6.670000e-115 425.0
10 TraesCS3A01G162800 chr7A 95.785 261 11 0 3885 4145 643222595 643222335 8.630000e-114 422.0
11 TraesCS3A01G162800 chr7A 88.506 87 10 0 6238 6324 310224331 310224417 9.870000e-19 106.0
12 TraesCS3A01G162800 chr3D 95.123 1579 50 13 5629 7195 148249329 148247766 0.000000e+00 2464.0
13 TraesCS3A01G162800 chr3D 92.865 1724 66 17 567 2249 148253109 148251402 0.000000e+00 2449.0
14 TraesCS3A01G162800 chr3D 86.770 1096 71 38 3734 4788 148251411 148250349 0.000000e+00 1153.0
15 TraesCS3A01G162800 chr3D 89.446 578 40 10 2 572 148334488 148333925 0.000000e+00 710.0
16 TraesCS3A01G162800 chr3D 94.366 426 20 2 5217 5638 148249788 148249363 0.000000e+00 651.0
17 TraesCS3A01G162800 chr3D 95.410 305 6 1 4853 5149 148250083 148249779 5.050000e-131 479.0
18 TraesCS3A01G162800 chr3D 91.463 82 7 0 6247 6328 138078840 138078921 5.900000e-21 113.0
19 TraesCS3A01G162800 chr6A 96.055 1521 37 9 2240 3739 63309746 63308228 0.000000e+00 2455.0
20 TraesCS3A01G162800 chr6A 96.146 1505 39 8 2249 3736 491002030 491003532 0.000000e+00 2440.0
21 TraesCS3A01G162800 chr6A 95.808 1503 44 8 2249 3734 100937622 100939122 0.000000e+00 2409.0
22 TraesCS3A01G162800 chr6A 94.971 1531 46 9 2247 3748 521654417 521652889 0.000000e+00 2372.0
23 TraesCS3A01G162800 chr6A 95.472 265 12 0 3881 4145 585458370 585458634 2.400000e-114 424.0
24 TraesCS3A01G162800 chr6A 83.730 252 31 6 2249 2494 564117556 564117309 5.610000e-56 230.0
25 TraesCS3A01G162800 chr6A 92.073 164 11 2 6732 6893 604587857 604588020 5.610000e-56 230.0
26 TraesCS3A01G162800 chr6A 89.595 173 14 4 6729 6898 233245050 233244879 4.370000e-52 217.0
27 TraesCS3A01G162800 chr2A 96.272 1502 37 8 2249 3734 780769205 780770703 0.000000e+00 2446.0
28 TraesCS3A01G162800 chr2A 82.883 111 17 2 6219 6328 446072024 446072133 1.650000e-16 99.0
29 TraesCS3A01G162800 chr5A 95.806 1502 43 7 2248 3733 633636303 633637800 0.000000e+00 2407.0
30 TraesCS3A01G162800 chr5A 95.452 1517 46 8 2240 3739 69550306 69551816 0.000000e+00 2398.0
31 TraesCS3A01G162800 chr5A 96.578 263 8 1 3884 4145 104620926 104621188 1.110000e-117 435.0
32 TraesCS3A01G162800 chr5A 95.802 262 11 0 3885 4146 631743694 631743433 2.400000e-114 424.0
33 TraesCS3A01G162800 chr5A 83.036 112 14 4 6229 6337 283308723 283308614 5.940000e-16 97.1
34 TraesCS3A01G162800 chr1A 95.678 1504 40 10 2249 3733 366545231 366546728 0.000000e+00 2394.0
35 TraesCS3A01G162800 chr1A 95.785 261 11 0 3885 4145 515769139 515768879 8.630000e-114 422.0
36 TraesCS3A01G162800 chr3B 93.845 1576 56 11 696 2241 213723102 213724666 0.000000e+00 2335.0
37 TraesCS3A01G162800 chr3B 93.643 991 43 12 5629 6614 213726639 213727614 0.000000e+00 1463.0
38 TraesCS3A01G162800 chr3B 90.923 650 43 7 4145 4782 213724817 213725462 0.000000e+00 859.0
39 TraesCS3A01G162800 chr3B 93.780 418 23 3 5224 5638 213726188 213726605 6.130000e-175 625.0
40 TraesCS3A01G162800 chr3B 90.265 452 18 10 4786 5225 213725589 213726026 1.050000e-157 568.0
41 TraesCS3A01G162800 chr3B 85.085 590 43 14 1 572 213711140 213711702 1.750000e-155 560.0
42 TraesCS3A01G162800 chr3B 95.139 144 7 0 3741 3884 213724672 213724815 2.020000e-55 228.0
43 TraesCS3A01G162800 chr3B 84.519 239 25 12 6330 6565 739028469 739028698 7.260000e-55 226.0
44 TraesCS3A01G162800 chr3B 82.639 144 18 5 6906 7042 76793077 76793220 3.530000e-23 121.0
45 TraesCS3A01G162800 chr3B 92.857 42 2 1 567 607 213713811 213713852 7.790000e-05 60.2
46 TraesCS3A01G162800 chr6D 92.751 938 46 7 2812 3735 366999983 367000912 0.000000e+00 1336.0
47 TraesCS3A01G162800 chr6D 92.896 929 45 7 2819 3735 130274223 130275142 0.000000e+00 1330.0
48 TraesCS3A01G162800 chr6D 93.186 587 27 6 2252 2825 366999355 366999941 0.000000e+00 850.0
49 TraesCS3A01G162800 chr6D 92.334 587 32 9 2252 2825 130273588 130274174 0.000000e+00 822.0
50 TraesCS3A01G162800 chr6D 83.333 258 32 9 6330 6584 15529834 15530083 2.020000e-55 228.0
51 TraesCS3A01G162800 chr6D 90.058 171 15 1 2249 2417 367000910 367000740 3.380000e-53 220.0
52 TraesCS3A01G162800 chr6D 89.474 171 16 1 2249 2417 130275140 130274970 1.570000e-51 215.0
53 TraesCS3A01G162800 chr6D 82.895 152 19 4 6897 7042 226403855 226403705 5.860000e-26 130.0
54 TraesCS3A01G162800 chr2D 92.696 931 46 7 2819 3735 476918544 476919466 0.000000e+00 1323.0
55 TraesCS3A01G162800 chr2D 93.186 587 27 6 2252 2825 476917909 476918495 0.000000e+00 850.0
56 TraesCS3A01G162800 chr2D 90.964 166 12 2 6731 6893 32474303 32474468 3.380000e-53 220.0
57 TraesCS3A01G162800 chr2D 81.982 111 18 2 6219 6328 335689675 335689784 7.690000e-15 93.5
58 TraesCS3A01G162800 chr5B 95.785 261 11 0 3885 4145 8967094 8966834 8.630000e-114 422.0
59 TraesCS3A01G162800 chr2B 84.953 319 43 5 2509 2823 779824395 779824712 1.160000e-82 318.0
60 TraesCS3A01G162800 chr2B 90.588 170 13 2 6730 6896 121479760 121479591 9.390000e-54 222.0
61 TraesCS3A01G162800 chr2B 90.964 166 13 1 6731 6894 248103544 248103709 9.390000e-54 222.0
62 TraesCS3A01G162800 chr2B 82.468 154 19 6 6897 7043 476362850 476363002 2.110000e-25 128.0
63 TraesCS3A01G162800 chr7D 87.218 266 29 4 2563 2823 254980955 254980690 1.520000e-76 298.0
64 TraesCS3A01G162800 chr7D 85.375 253 27 7 2249 2494 254981283 254981034 3.330000e-63 254.0
65 TraesCS3A01G162800 chr7D 83.673 245 31 9 6329 6570 27666507 27666269 9.390000e-54 222.0
66 TraesCS3A01G162800 chr7D 88.506 87 9 1 6238 6324 276514124 276514209 3.550000e-18 104.0
67 TraesCS3A01G162800 chr5D 86.842 266 30 4 2563 2823 494708308 494708043 7.060000e-75 292.0
68 TraesCS3A01G162800 chr5D 86.111 252 26 6 2249 2494 494708635 494708387 5.540000e-66 263.0
69 TraesCS3A01G162800 chr5D 91.463 164 12 2 6732 6893 544772525 544772362 2.610000e-54 224.0
70 TraesCS3A01G162800 chr5D 87.719 171 18 2 2248 2416 556446675 556446506 5.690000e-46 196.0
71 TraesCS3A01G162800 chr5D 100.000 28 0 0 2389 2416 91869912 91869939 1.300000e-02 52.8
72 TraesCS3A01G162800 chr1B 84.190 253 31 6 6330 6579 73894744 73894498 3.360000e-58 237.0
73 TraesCS3A01G162800 chr1B 83.399 253 32 7 6330 6579 73870522 73870277 7.260000e-55 226.0
74 TraesCS3A01G162800 chrUn 84.082 245 30 6 6328 6570 150792259 150792022 2.020000e-55 228.0
75 TraesCS3A01G162800 chr6B 91.515 165 12 1 6731 6893 17866185 17866021 7.260000e-55 226.0
76 TraesCS3A01G162800 chr4A 90.116 172 14 2 6731 6899 346686996 346686825 3.380000e-53 220.0
77 TraesCS3A01G162800 chr1D 87.368 95 10 2 6249 6341 7349703 7349797 2.740000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G162800 chr3A 164927890 164935084 7194 False 13287.0 13287 100.0000 1 7195 1 chr3A.!!$F1 7194
1 TraesCS3A01G162800 chr7A 664105095 664106611 1516 False 2471.0 2471 96.3130 2240 3734 1 chr7A.!!$F3 1494
2 TraesCS3A01G162800 chr7A 673411845 673413356 1511 True 2451.0 2451 96.1000 2241 3736 1 chr7A.!!$R5 1495
3 TraesCS3A01G162800 chr7A 529440254 529441758 1504 False 2435.0 2435 96.0820 2249 3734 1 chr7A.!!$F2 1485
4 TraesCS3A01G162800 chr7A 706306846 706308348 1502 True 2422.0 2422 95.9550 2249 3734 1 chr7A.!!$R6 1485
5 TraesCS3A01G162800 chr7A 603018509 603020002 1493 True 2401.0 2401 95.8560 2254 3732 1 chr7A.!!$R2 1478
6 TraesCS3A01G162800 chr3D 148247766 148253109 5343 True 1439.2 2464 92.9068 567 7195 5 chr3D.!!$R2 6628
7 TraesCS3A01G162800 chr3D 148333925 148334488 563 True 710.0 710 89.4460 2 572 1 chr3D.!!$R1 570
8 TraesCS3A01G162800 chr6A 63308228 63309746 1518 True 2455.0 2455 96.0550 2240 3739 1 chr6A.!!$R1 1499
9 TraesCS3A01G162800 chr6A 491002030 491003532 1502 False 2440.0 2440 96.1460 2249 3736 1 chr6A.!!$F2 1487
10 TraesCS3A01G162800 chr6A 100937622 100939122 1500 False 2409.0 2409 95.8080 2249 3734 1 chr6A.!!$F1 1485
11 TraesCS3A01G162800 chr6A 521652889 521654417 1528 True 2372.0 2372 94.9710 2247 3748 1 chr6A.!!$R3 1501
12 TraesCS3A01G162800 chr2A 780769205 780770703 1498 False 2446.0 2446 96.2720 2249 3734 1 chr2A.!!$F2 1485
13 TraesCS3A01G162800 chr5A 633636303 633637800 1497 False 2407.0 2407 95.8060 2248 3733 1 chr5A.!!$F3 1485
14 TraesCS3A01G162800 chr5A 69550306 69551816 1510 False 2398.0 2398 95.4520 2240 3739 1 chr5A.!!$F1 1499
15 TraesCS3A01G162800 chr1A 366545231 366546728 1497 False 2394.0 2394 95.6780 2249 3733 1 chr1A.!!$F1 1484
16 TraesCS3A01G162800 chr3B 213723102 213727614 4512 False 1013.0 2335 92.9325 696 6614 6 chr3B.!!$F4 5918
17 TraesCS3A01G162800 chr3B 213711140 213713852 2712 False 310.1 560 88.9710 1 607 2 chr3B.!!$F3 606
18 TraesCS3A01G162800 chr6D 366999355 367000912 1557 False 1093.0 1336 92.9685 2252 3735 2 chr6D.!!$F3 1483
19 TraesCS3A01G162800 chr6D 130273588 130275142 1554 False 1076.0 1330 92.6150 2252 3735 2 chr6D.!!$F2 1483
20 TraesCS3A01G162800 chr2D 476917909 476919466 1557 False 1086.5 1323 92.9410 2252 3735 2 chr2D.!!$F3 1483
21 TraesCS3A01G162800 chr7D 254980690 254981283 593 True 276.0 298 86.2965 2249 2823 2 chr7D.!!$R2 574
22 TraesCS3A01G162800 chr5D 494708043 494708635 592 True 277.5 292 86.4765 2249 2823 2 chr5D.!!$R3 574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
243 251 0.184692 TGATGTGCCCTGTTGGTTCA 59.815 50.000 0.0 0.0 36.04 3.18 F
444 467 0.250513 AAAGATGAGGTGGCCGAGTC 59.749 55.000 0.0 0.0 0.00 3.36 F
988 1075 0.548439 AACCCCTAAACCGTAGCCCT 60.548 55.000 0.0 0.0 0.00 5.19 F
1945 2103 0.392998 TTTTCTGAGATCTGGGCCGC 60.393 55.000 0.0 0.0 0.00 6.53 F
2174 2348 0.543174 AGCTTCCTCCCGTGTTCTCT 60.543 55.000 0.0 0.0 0.00 3.10 F
3237 4715 0.587768 CACATGTCGCAGTTGCTTGA 59.412 50.000 0.0 0.0 39.32 3.02 F
3905 5404 1.907255 ACTCCCTCCGGTCCTTTTTAG 59.093 52.381 0.0 0.0 0.00 1.85 F
4389 5918 0.104855 ATGTGTGAGTGCGTGTGACT 59.895 50.000 0.0 0.0 0.00 3.41 F
4390 5919 0.805711 TGTGTGAGTGCGTGTGACTG 60.806 55.000 0.0 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1487 1645 1.001974 TGGAACTCGACCACCATGAAG 59.998 52.381 0.00 0.00 32.03 3.02 R
1945 2103 1.805945 GCCGCCTTGTACGAGTCAG 60.806 63.158 9.32 0.32 0.00 3.51 R
2426 2615 2.096657 GGGTTTTGTGCAAAAATGCGTT 59.903 40.909 2.11 0.00 41.37 4.84 R
3237 4715 1.439353 CTCGCGCATAAGCCAACCAT 61.439 55.000 8.75 0.00 37.52 3.55 R
4123 5652 2.558974 ACTCCCTCCGGTCCTTTTTAT 58.441 47.619 0.00 0.00 0.00 1.40 R
4381 5910 0.739462 ACCACACACACAGTCACACG 60.739 55.000 0.00 0.00 0.00 4.49 R
4802 6507 1.200020 GGCAATGAAAAGTGTCCCTCG 59.800 52.381 0.00 0.00 0.00 4.63 R
6142 8202 0.674581 TCAGGCAGCTCGTGAAATGG 60.675 55.000 6.22 0.00 36.72 3.16 R
6302 8363 4.304110 TGTTCACTCATTTCGGACTGTAC 58.696 43.478 0.00 0.00 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 41 6.758254 TGCCTTTTAATTCCTTCTTTTGGAG 58.242 36.000 0.00 0.00 34.76 3.86
143 148 7.250445 ACAAAATGGATGAAACTTTTTGCTC 57.750 32.000 13.13 0.00 42.18 4.26
144 149 7.049754 ACAAAATGGATGAAACTTTTTGCTCT 58.950 30.769 13.13 0.00 42.18 4.09
165 170 5.676552 TCTTGCTTGTTTGTCTTACCACTA 58.323 37.500 0.00 0.00 0.00 2.74
186 191 8.180267 CCACTATTTCAGTTCAGACATGAATTC 58.820 37.037 0.00 0.00 46.75 2.17
193 201 7.772166 TCAGTTCAGACATGAATTCGTAGTAT 58.228 34.615 0.00 0.00 46.75 2.12
200 208 6.980978 AGACATGAATTCGTAGTATTGGTCAG 59.019 38.462 0.00 0.00 0.00 3.51
223 231 6.587990 CAGTTCAGTTTAGCGCTATATATGCT 59.412 38.462 19.60 8.74 42.58 3.79
240 248 1.181098 GCTTGATGTGCCCTGTTGGT 61.181 55.000 0.00 0.00 36.04 3.67
242 250 1.270550 CTTGATGTGCCCTGTTGGTTC 59.729 52.381 0.00 0.00 36.04 3.62
243 251 0.184692 TGATGTGCCCTGTTGGTTCA 59.815 50.000 0.00 0.00 36.04 3.18
244 252 0.883833 GATGTGCCCTGTTGGTTCAG 59.116 55.000 0.00 0.00 36.04 3.02
245 253 0.478072 ATGTGCCCTGTTGGTTCAGA 59.522 50.000 0.00 0.00 37.61 3.27
246 254 0.257328 TGTGCCCTGTTGGTTCAGAA 59.743 50.000 0.00 0.00 37.61 3.02
247 255 0.954452 GTGCCCTGTTGGTTCAGAAG 59.046 55.000 0.00 0.00 37.61 2.85
248 256 0.550914 TGCCCTGTTGGTTCAGAAGT 59.449 50.000 0.00 0.00 37.61 3.01
249 257 1.771854 TGCCCTGTTGGTTCAGAAGTA 59.228 47.619 0.00 0.00 37.61 2.24
250 258 2.173782 TGCCCTGTTGGTTCAGAAGTAA 59.826 45.455 0.00 0.00 37.61 2.24
251 259 3.219281 GCCCTGTTGGTTCAGAAGTAAA 58.781 45.455 0.00 0.00 37.61 2.01
252 260 3.826729 GCCCTGTTGGTTCAGAAGTAAAT 59.173 43.478 0.00 0.00 37.61 1.40
253 261 4.082733 GCCCTGTTGGTTCAGAAGTAAATC 60.083 45.833 0.00 0.00 37.61 2.17
254 262 5.070001 CCCTGTTGGTTCAGAAGTAAATCA 58.930 41.667 0.00 0.00 37.61 2.57
255 263 5.182001 CCCTGTTGGTTCAGAAGTAAATCAG 59.818 44.000 0.00 0.00 37.61 2.90
256 264 5.182001 CCTGTTGGTTCAGAAGTAAATCAGG 59.818 44.000 0.00 0.00 37.61 3.86
263 286 4.318332 TCAGAAGTAAATCAGGCAGTGTG 58.682 43.478 0.00 0.00 0.00 3.82
273 296 4.743018 GCAGTGTGCCTATGGGTT 57.257 55.556 0.00 0.00 37.42 4.11
295 318 0.912487 TGGGTCCGGAAGTAAGGCAT 60.912 55.000 5.23 0.00 0.00 4.40
339 362 2.350498 CGTGTTAACTTTGCCTATCCGG 59.650 50.000 7.22 0.00 0.00 5.14
348 371 2.108362 CCTATCCGGCCGTTCCAC 59.892 66.667 26.12 0.00 34.01 4.02
355 378 3.803886 GGCCGTTCCACCGATTAC 58.196 61.111 0.00 0.00 34.01 1.89
377 400 1.662629 CAACTGGACGCATGTGAGATC 59.337 52.381 14.43 0.00 0.00 2.75
381 404 1.633171 GACGCATGTGAGATCGTGC 59.367 57.895 14.43 0.00 44.10 5.34
396 419 3.394674 TCGTGCTACATCCTTTGTTGA 57.605 42.857 0.00 0.00 39.87 3.18
398 421 3.067106 CGTGCTACATCCTTTGTTGAGT 58.933 45.455 0.00 0.00 39.87 3.41
399 422 3.498397 CGTGCTACATCCTTTGTTGAGTT 59.502 43.478 0.00 0.00 39.87 3.01
407 430 6.773638 ACATCCTTTGTTGAGTTATCTGACT 58.226 36.000 0.00 0.00 33.74 3.41
442 465 1.826385 AAAAAGATGAGGTGGCCGAG 58.174 50.000 0.00 0.00 0.00 4.63
443 466 0.693049 AAAAGATGAGGTGGCCGAGT 59.307 50.000 0.00 0.00 0.00 4.18
444 467 0.250513 AAAGATGAGGTGGCCGAGTC 59.749 55.000 0.00 0.00 0.00 3.36
445 468 0.616111 AAGATGAGGTGGCCGAGTCT 60.616 55.000 0.00 0.00 0.00 3.24
465 488 7.360101 CGAGTCTTGTTTTTGGTAATAGTCCAG 60.360 40.741 0.00 0.00 36.28 3.86
475 510 6.367374 TGGTAATAGTCCAGTGAAATGTCA 57.633 37.500 0.00 0.00 0.00 3.58
504 539 1.284491 TGCATATTGCCCTTGACTGGA 59.716 47.619 0.00 0.00 44.23 3.86
520 555 3.165071 ACTGGATTTGGTGGGTGATTTC 58.835 45.455 0.00 0.00 0.00 2.17
525 560 2.302587 TTGGTGGGTGATTTCTTCCC 57.697 50.000 0.00 0.00 41.41 3.97
531 566 2.289565 GGGTGATTTCTTCCCATCGTC 58.710 52.381 0.00 0.00 40.79 4.20
536 571 1.808411 TTTCTTCCCATCGTCTGCAC 58.192 50.000 0.00 0.00 0.00 4.57
548 583 1.954146 TCTGCACGCTTGTTCGTCC 60.954 57.895 0.00 0.00 41.21 4.79
609 644 1.452110 AGCGCACAATGTTGCTATCA 58.548 45.000 11.47 0.00 40.62 2.15
626 661 4.156556 GCTATCAAGAAATGACCAGCACAA 59.843 41.667 8.29 0.00 43.81 3.33
629 664 5.627499 TCAAGAAATGACCAGCACAATAC 57.373 39.130 0.00 0.00 31.50 1.89
631 666 5.181811 TCAAGAAATGACCAGCACAATACAG 59.818 40.000 0.00 0.00 31.50 2.74
632 667 4.655963 AGAAATGACCAGCACAATACAGT 58.344 39.130 0.00 0.00 0.00 3.55
634 669 5.643777 AGAAATGACCAGCACAATACAGTAC 59.356 40.000 0.00 0.00 0.00 2.73
689 724 0.658829 CGATCGATCTCCGTGCTGTC 60.659 60.000 22.43 0.00 39.75 3.51
693 728 1.520342 GATCTCCGTGCTGTCTGCC 60.520 63.158 0.00 0.00 42.00 4.85
702 737 3.644606 CTGTCTGCCCTGGCCAGT 61.645 66.667 30.63 0.00 41.09 4.00
825 875 1.062525 CCGCACGCAAAAGATAGCC 59.937 57.895 0.00 0.00 0.00 3.93
830 880 1.297893 CGCAAAAGATAGCCAGCGC 60.298 57.895 0.00 0.00 38.68 5.92
831 881 1.297893 GCAAAAGATAGCCAGCGCG 60.298 57.895 0.00 0.00 41.18 6.86
833 883 2.813179 AAAAGATAGCCAGCGCGCG 61.813 57.895 28.44 28.44 41.18 6.86
834 884 4.514577 AAGATAGCCAGCGCGCGT 62.515 61.111 32.35 15.53 41.18 6.01
835 885 2.622903 AAAGATAGCCAGCGCGCGTA 62.623 55.000 32.35 15.85 41.18 4.42
836 886 3.395687 GATAGCCAGCGCGCGTAC 61.396 66.667 32.35 18.58 41.18 3.67
837 887 4.201679 ATAGCCAGCGCGCGTACA 62.202 61.111 32.35 11.75 41.18 2.90
843 893 4.351938 AGCGCGCGTACACCTCAA 62.352 61.111 32.35 0.00 0.00 3.02
844 894 3.838795 GCGCGCGTACACCTCAAG 61.839 66.667 32.35 0.00 0.00 3.02
845 895 3.838795 CGCGCGTACACCTCAAGC 61.839 66.667 24.19 0.00 0.00 4.01
848 898 3.460144 GCGTACACCTCAAGCGAC 58.540 61.111 0.00 0.00 0.00 5.19
849 899 2.434134 GCGTACACCTCAAGCGACG 61.434 63.158 0.00 0.00 0.00 5.12
850 900 2.434134 CGTACACCTCAAGCGACGC 61.434 63.158 13.03 13.03 0.00 5.19
851 901 2.092882 GTACACCTCAAGCGACGCC 61.093 63.158 17.79 0.00 0.00 5.68
852 902 3.291101 TACACCTCAAGCGACGCCC 62.291 63.158 17.79 0.00 0.00 6.13
893 964 0.744281 CTTCGCTCTCTTCCTCCCTC 59.256 60.000 0.00 0.00 0.00 4.30
938 1025 1.264288 GCAACCCGACAGAGTTCAAAG 59.736 52.381 0.00 0.00 0.00 2.77
940 1027 2.943033 CAACCCGACAGAGTTCAAAGTT 59.057 45.455 0.00 0.00 0.00 2.66
941 1028 2.835027 ACCCGACAGAGTTCAAAGTTC 58.165 47.619 0.00 0.00 0.00 3.01
942 1029 2.169769 ACCCGACAGAGTTCAAAGTTCA 59.830 45.455 0.00 0.00 0.00 3.18
944 1031 3.625764 CCCGACAGAGTTCAAAGTTCAAA 59.374 43.478 0.00 0.00 0.00 2.69
945 1032 4.495844 CCCGACAGAGTTCAAAGTTCAAAC 60.496 45.833 0.00 0.00 0.00 2.93
946 1033 4.332819 CCGACAGAGTTCAAAGTTCAAACT 59.667 41.667 3.24 3.24 42.04 2.66
981 1068 1.694844 ACAACCAAACCCCTAAACCG 58.305 50.000 0.00 0.00 0.00 4.44
988 1075 0.548439 AACCCCTAAACCGTAGCCCT 60.548 55.000 0.00 0.00 0.00 5.19
1945 2103 0.392998 TTTTCTGAGATCTGGGCCGC 60.393 55.000 0.00 0.00 0.00 6.53
2166 2340 0.749454 CCCATTTGAGCTTCCTCCCG 60.749 60.000 0.00 0.00 37.29 5.14
2174 2348 0.543174 AGCTTCCTCCCGTGTTCTCT 60.543 55.000 0.00 0.00 0.00 3.10
2186 2360 2.549754 CGTGTTCTCTGCAGGTGATTTT 59.450 45.455 15.13 0.00 0.00 1.82
2219 2397 3.069778 GGAACTCTTCCCCGTGCT 58.930 61.111 0.00 0.00 44.30 4.40
2220 2398 1.376037 GGAACTCTTCCCCGTGCTG 60.376 63.158 0.00 0.00 44.30 4.41
2221 2399 1.376037 GAACTCTTCCCCGTGCTGG 60.376 63.158 0.00 0.00 37.55 4.85
2243 2421 7.575720 GCTGGTAGCACTTTCTGTCAATTATTT 60.576 37.037 0.00 0.00 41.89 1.40
2244 2422 8.177119 TGGTAGCACTTTCTGTCAATTATTTT 57.823 30.769 0.00 0.00 0.00 1.82
2245 2423 8.081633 TGGTAGCACTTTCTGTCAATTATTTTG 58.918 33.333 0.00 0.00 0.00 2.44
2325 2505 4.987832 AGTTGCAAAATACGTGTTTGTGA 58.012 34.783 20.82 11.47 38.09 3.58
2426 2615 2.429478 CCTGCTGTCAATGACACATGA 58.571 47.619 12.63 0.00 37.67 3.07
3237 4715 0.587768 CACATGTCGCAGTTGCTTGA 59.412 50.000 0.00 0.00 39.32 3.02
3531 5010 6.731292 AAAAAGAACTGTGGGCTTTTCTAT 57.269 33.333 13.21 1.32 39.99 1.98
3843 5324 4.803098 AGCTTACATTAGGTTCGACTGT 57.197 40.909 0.00 0.00 0.00 3.55
3893 5392 4.679331 AGAGCTTACCATATACTCCCTCC 58.321 47.826 0.00 0.00 0.00 4.30
3905 5404 1.907255 ACTCCCTCCGGTCCTTTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
3907 5406 2.305052 CTCCCTCCGGTCCTTTTTAGTT 59.695 50.000 0.00 0.00 0.00 2.24
3908 5407 2.303890 TCCCTCCGGTCCTTTTTAGTTC 59.696 50.000 0.00 0.00 0.00 3.01
3918 5417 6.292703 CGGTCCTTTTTAGTTCGCATATAAGG 60.293 42.308 0.00 0.00 33.79 2.69
3919 5418 6.541278 GGTCCTTTTTAGTTCGCATATAAGGT 59.459 38.462 0.00 0.00 34.10 3.50
3923 5422 8.455682 CCTTTTTAGTTCGCATATAAGGTTTGA 58.544 33.333 0.00 0.00 0.00 2.69
3929 5428 6.823689 AGTTCGCATATAAGGTTTGACTGAAT 59.176 34.615 0.00 0.00 0.00 2.57
3934 5433 7.641411 CGCATATAAGGTTTGACTGAATTCAAG 59.359 37.037 9.88 6.49 36.84 3.02
3954 5453 4.547406 AGCTTCGTAAAGTTTGACCAAC 57.453 40.909 0.00 0.00 34.79 3.77
3989 5488 9.868277 AAAAAGTGTCAACATTCACAATCTAAA 57.132 25.926 0.00 0.00 37.07 1.85
3990 5489 9.868277 AAAAGTGTCAACATTCACAATCTAAAA 57.132 25.926 0.00 0.00 37.07 1.52
3992 5491 9.683069 AAGTGTCAACATTCACAATCTAAAATC 57.317 29.630 0.00 0.00 37.07 2.17
3993 5492 8.849168 AGTGTCAACATTCACAATCTAAAATCA 58.151 29.630 0.00 0.00 37.07 2.57
3994 5493 9.462174 GTGTCAACATTCACAATCTAAAATCAA 57.538 29.630 0.00 0.00 35.04 2.57
4000 5499 9.793252 ACATTCACAATCTAAAATCAATACTGC 57.207 29.630 0.00 0.00 0.00 4.40
4010 5509 9.534565 TCTAAAATCAATACTGCTAGATGTGTC 57.465 33.333 0.00 0.00 0.00 3.67
4011 5510 9.317936 CTAAAATCAATACTGCTAGATGTGTCA 57.682 33.333 0.00 0.00 0.00 3.58
4012 5511 8.743085 AAAATCAATACTGCTAGATGTGTCAT 57.257 30.769 0.00 0.00 0.00 3.06
4013 5512 7.725818 AATCAATACTGCTAGATGTGTCATG 57.274 36.000 0.00 0.00 0.00 3.07
4014 5513 6.469782 TCAATACTGCTAGATGTGTCATGA 57.530 37.500 0.00 0.00 0.00 3.07
4015 5514 6.276091 TCAATACTGCTAGATGTGTCATGAC 58.724 40.000 19.27 19.27 0.00 3.06
4016 5515 6.097412 TCAATACTGCTAGATGTGTCATGACT 59.903 38.462 25.55 6.60 0.00 3.41
4024 5523 7.661437 TGCTAGATGTGTCATGACTTAAAGTTT 59.339 33.333 25.55 7.45 0.00 2.66
4025 5524 8.171840 GCTAGATGTGTCATGACTTAAAGTTTC 58.828 37.037 25.55 11.27 0.00 2.78
4027 5526 8.627208 AGATGTGTCATGACTTAAAGTTTCAT 57.373 30.769 25.55 14.42 0.00 2.57
4056 5585 4.445452 AACTTTAGCATGGCAGATGTTG 57.555 40.909 0.00 0.00 0.00 3.33
4120 5649 9.671279 TTTGACTTCAGAGAATTCTAATATGCA 57.329 29.630 8.25 0.00 30.73 3.96
4121 5650 8.883954 TGACTTCAGAGAATTCTAATATGCAG 57.116 34.615 8.25 7.58 30.73 4.41
4123 5652 9.539825 GACTTCAGAGAATTCTAATATGCAGAA 57.460 33.333 8.25 2.99 36.50 3.02
4168 5697 4.497674 CCGTTGAGCTAGTAGTATGTGGAC 60.498 50.000 0.00 0.00 0.00 4.02
4352 5881 2.689471 TGCATGTGGATTGAATGGCTAC 59.311 45.455 0.00 0.00 0.00 3.58
4378 5907 8.534333 TTTAGCTACTTGTTCTAATGTGTGAG 57.466 34.615 0.00 0.00 0.00 3.51
4379 5908 6.102897 AGCTACTTGTTCTAATGTGTGAGT 57.897 37.500 0.00 0.00 0.00 3.41
4380 5909 5.928839 AGCTACTTGTTCTAATGTGTGAGTG 59.071 40.000 0.00 0.00 0.00 3.51
4381 5910 5.389935 GCTACTTGTTCTAATGTGTGAGTGC 60.390 44.000 0.00 0.00 0.00 4.40
4382 5911 3.494626 ACTTGTTCTAATGTGTGAGTGCG 59.505 43.478 0.00 0.00 0.00 5.34
4383 5912 3.106242 TGTTCTAATGTGTGAGTGCGT 57.894 42.857 0.00 0.00 0.00 5.24
4384 5913 2.799978 TGTTCTAATGTGTGAGTGCGTG 59.200 45.455 0.00 0.00 0.00 5.34
4385 5914 2.800544 GTTCTAATGTGTGAGTGCGTGT 59.199 45.455 0.00 0.00 0.00 4.49
4386 5915 2.403259 TCTAATGTGTGAGTGCGTGTG 58.597 47.619 0.00 0.00 0.00 3.82
4387 5916 2.035321 TCTAATGTGTGAGTGCGTGTGA 59.965 45.455 0.00 0.00 0.00 3.58
4388 5917 0.937304 AATGTGTGAGTGCGTGTGAC 59.063 50.000 0.00 0.00 0.00 3.67
4389 5918 0.104855 ATGTGTGAGTGCGTGTGACT 59.895 50.000 0.00 0.00 0.00 3.41
4390 5919 0.805711 TGTGTGAGTGCGTGTGACTG 60.806 55.000 0.00 0.00 0.00 3.51
4391 5920 0.806102 GTGTGAGTGCGTGTGACTGT 60.806 55.000 0.00 0.00 0.00 3.55
4392 5921 0.805711 TGTGAGTGCGTGTGACTGTG 60.806 55.000 0.00 0.00 0.00 3.66
4429 5958 2.483491 GAGGCATTAGCTAGCTTGATGC 59.517 50.000 34.87 34.87 40.46 3.91
4430 5959 2.106166 AGGCATTAGCTAGCTTGATGCT 59.894 45.455 37.43 28.53 46.15 3.79
4503 6032 1.320555 CCGCTTCGTTATCAAGTGTCG 59.679 52.381 0.00 0.00 30.65 4.35
4532 6061 9.158233 TCATGAGCAATGTGTATATACATCATG 57.842 33.333 29.00 29.00 42.14 3.07
4574 6110 2.361119 TCGACGCTATAGCATTTGGAGT 59.639 45.455 23.99 11.71 42.21 3.85
4628 6174 4.699257 AGCATGCTATAGCTCCAATTTAGC 59.301 41.667 21.21 14.03 42.66 3.09
4629 6175 4.456911 GCATGCTATAGCTCCAATTTAGCA 59.543 41.667 24.61 9.56 46.47 3.49
4660 6207 6.980593 TGCTTTTATCGCTATTTGCCATATT 58.019 32.000 0.00 0.00 38.78 1.28
4802 6507 2.863809 AGTTGTCACCAGGAAATCCAC 58.136 47.619 1.67 0.00 38.89 4.02
4851 6604 7.773224 TCAGACCTTTTCTTTTGATTGTAGTGA 59.227 33.333 0.00 0.00 28.96 3.41
4882 6635 4.398673 ACACTTAAACCGGCTTTTGTGTTA 59.601 37.500 17.08 0.00 36.09 2.41
5020 6785 7.285858 ACTCTTCACTTCAGTAACAGACTAACT 59.714 37.037 0.00 0.00 35.64 2.24
5073 6838 2.371841 AGCCAAGTGCCATTATATCGGA 59.628 45.455 0.00 0.00 42.71 4.55
5143 6908 6.073058 GCACTAACATTTTGTGTCTCATGAGA 60.073 38.462 21.67 21.67 41.14 3.27
5144 6909 7.516481 CACTAACATTTTGTGTCTCATGAGAG 58.484 38.462 25.76 13.45 41.14 3.20
5145 6910 7.172190 CACTAACATTTTGTGTCTCATGAGAGT 59.828 37.037 25.76 14.09 41.14 3.24
5146 6911 6.949352 AACATTTTGTGTCTCATGAGAGTT 57.051 33.333 25.76 18.76 41.14 3.01
5147 6912 9.208022 CTAACATTTTGTGTCTCATGAGAGTTA 57.792 33.333 25.76 22.18 41.14 2.24
5148 6913 7.664082 ACATTTTGTGTCTCATGAGAGTTAG 57.336 36.000 25.76 12.22 42.66 2.34
5149 6914 6.652481 ACATTTTGTGTCTCATGAGAGTTAGG 59.348 38.462 25.76 12.49 42.66 2.69
5150 6915 6.419484 TTTTGTGTCTCATGAGAGTTAGGA 57.581 37.500 25.76 8.44 42.66 2.94
5151 6916 6.611613 TTTGTGTCTCATGAGAGTTAGGAT 57.388 37.500 25.76 0.00 42.66 3.24
5152 6917 5.588958 TGTGTCTCATGAGAGTTAGGATG 57.411 43.478 25.76 0.00 42.66 3.51
5153 6918 5.264395 TGTGTCTCATGAGAGTTAGGATGA 58.736 41.667 25.76 0.00 42.66 2.92
5154 6919 5.359292 TGTGTCTCATGAGAGTTAGGATGAG 59.641 44.000 25.76 0.00 42.12 2.90
5155 6920 4.892345 TGTCTCATGAGAGTTAGGATGAGG 59.108 45.833 25.76 0.00 41.41 3.86
5156 6921 4.280677 GTCTCATGAGAGTTAGGATGAGGG 59.719 50.000 25.76 0.00 41.41 4.30
5157 6922 4.078922 TCTCATGAGAGTTAGGATGAGGGT 60.079 45.833 21.67 0.00 41.41 4.34
5158 6923 3.963374 TCATGAGAGTTAGGATGAGGGTG 59.037 47.826 0.00 0.00 0.00 4.61
5159 6924 3.757947 TGAGAGTTAGGATGAGGGTGA 57.242 47.619 0.00 0.00 0.00 4.02
5160 6925 4.271807 TGAGAGTTAGGATGAGGGTGAT 57.728 45.455 0.00 0.00 0.00 3.06
5161 6926 4.624913 TGAGAGTTAGGATGAGGGTGATT 58.375 43.478 0.00 0.00 0.00 2.57
5162 6927 5.032846 TGAGAGTTAGGATGAGGGTGATTT 58.967 41.667 0.00 0.00 0.00 2.17
5163 6928 5.488919 TGAGAGTTAGGATGAGGGTGATTTT 59.511 40.000 0.00 0.00 0.00 1.82
5164 6929 5.749462 AGAGTTAGGATGAGGGTGATTTTG 58.251 41.667 0.00 0.00 0.00 2.44
5165 6930 5.251700 AGAGTTAGGATGAGGGTGATTTTGT 59.748 40.000 0.00 0.00 0.00 2.83
5166 6931 5.892348 AGTTAGGATGAGGGTGATTTTGTT 58.108 37.500 0.00 0.00 0.00 2.83
5167 6932 5.711976 AGTTAGGATGAGGGTGATTTTGTTG 59.288 40.000 0.00 0.00 0.00 3.33
5168 6933 4.387026 AGGATGAGGGTGATTTTGTTGA 57.613 40.909 0.00 0.00 0.00 3.18
5169 6934 4.739793 AGGATGAGGGTGATTTTGTTGAA 58.260 39.130 0.00 0.00 0.00 2.69
5170 6935 5.147032 AGGATGAGGGTGATTTTGTTGAAA 58.853 37.500 0.00 0.00 0.00 2.69
5171 6936 5.602145 AGGATGAGGGTGATTTTGTTGAAAA 59.398 36.000 0.00 0.00 35.52 2.29
5172 6937 6.270695 AGGATGAGGGTGATTTTGTTGAAAAT 59.729 34.615 0.00 0.00 43.20 1.82
5173 6938 7.454380 AGGATGAGGGTGATTTTGTTGAAAATA 59.546 33.333 0.00 0.00 41.06 1.40
5174 6939 8.260114 GGATGAGGGTGATTTTGTTGAAAATAT 58.740 33.333 0.00 0.00 41.06 1.28
5178 6943 9.750125 GAGGGTGATTTTGTTGAAAATATATCC 57.250 33.333 0.00 0.00 41.06 2.59
5179 6944 9.265862 AGGGTGATTTTGTTGAAAATATATCCA 57.734 29.630 0.00 0.00 41.06 3.41
5180 6945 9.883142 GGGTGATTTTGTTGAAAATATATCCAA 57.117 29.630 0.00 0.00 41.06 3.53
5189 6954 9.699410 TGTTGAAAATATATCCAAATCCACTCT 57.301 29.630 0.00 0.00 0.00 3.24
5200 6965 7.133133 TCCAAATCCACTCTTAACTATACCC 57.867 40.000 0.00 0.00 0.00 3.69
5201 6966 6.906901 TCCAAATCCACTCTTAACTATACCCT 59.093 38.462 0.00 0.00 0.00 4.34
5202 6967 7.404980 TCCAAATCCACTCTTAACTATACCCTT 59.595 37.037 0.00 0.00 0.00 3.95
5203 6968 8.053355 CCAAATCCACTCTTAACTATACCCTTT 58.947 37.037 0.00 0.00 0.00 3.11
5204 6969 9.462606 CAAATCCACTCTTAACTATACCCTTTT 57.537 33.333 0.00 0.00 0.00 2.27
5205 6970 9.462606 AAATCCACTCTTAACTATACCCTTTTG 57.537 33.333 0.00 0.00 0.00 2.44
5206 6971 6.954232 TCCACTCTTAACTATACCCTTTTGG 58.046 40.000 0.00 0.00 41.37 3.28
5207 6972 5.589050 CCACTCTTAACTATACCCTTTTGGC 59.411 44.000 0.00 0.00 37.83 4.52
5208 6973 5.589050 CACTCTTAACTATACCCTTTTGGCC 59.411 44.000 0.00 0.00 37.83 5.36
5209 6974 5.491439 ACTCTTAACTATACCCTTTTGGCCT 59.509 40.000 3.32 0.00 37.83 5.19
5210 6975 5.751586 TCTTAACTATACCCTTTTGGCCTG 58.248 41.667 3.32 0.00 37.83 4.85
5211 6976 5.252164 TCTTAACTATACCCTTTTGGCCTGT 59.748 40.000 3.32 0.00 37.83 4.00
5212 6977 4.397919 AACTATACCCTTTTGGCCTGTT 57.602 40.909 3.32 0.00 37.83 3.16
5213 6978 4.397919 ACTATACCCTTTTGGCCTGTTT 57.602 40.909 3.32 0.00 37.83 2.83
5214 6979 5.523883 ACTATACCCTTTTGGCCTGTTTA 57.476 39.130 3.32 0.00 37.83 2.01
5215 6980 5.258841 ACTATACCCTTTTGGCCTGTTTAC 58.741 41.667 3.32 0.00 37.83 2.01
5216 6981 2.767644 ACCCTTTTGGCCTGTTTACT 57.232 45.000 3.32 0.00 37.83 2.24
5217 6982 2.316108 ACCCTTTTGGCCTGTTTACTG 58.684 47.619 3.32 0.00 37.83 2.74
5218 6983 2.091555 ACCCTTTTGGCCTGTTTACTGA 60.092 45.455 3.32 0.00 37.83 3.41
5219 6984 3.165071 CCCTTTTGGCCTGTTTACTGAT 58.835 45.455 3.32 0.00 38.58 2.90
5345 7351 8.079809 TGAGTGCATGCATCTTATTTCATTATG 58.920 33.333 25.64 0.00 0.00 1.90
5350 7356 6.335471 TGCATCTTATTTCATTATGGGCAG 57.665 37.500 0.00 0.00 0.00 4.85
5385 7392 9.573166 TGCTACTCTATTGCCAATTTATACATT 57.427 29.630 0.00 0.00 0.00 2.71
5407 7414 8.802267 ACATTGTACCTTGTTAATGCTTATGTT 58.198 29.630 0.00 0.00 34.69 2.71
5547 7558 7.158099 AGGATGCAGTTACTGTTTTTATTCC 57.842 36.000 14.23 9.40 33.43 3.01
6053 8113 1.533756 CCGTTTGCCTGTGAACAACTG 60.534 52.381 0.00 0.00 0.00 3.16
6106 8166 1.202722 TCCTTTTCGACCTGGACCAAC 60.203 52.381 0.00 0.00 0.00 3.77
6142 8202 1.543429 GGCTCATGGTACTGTATGGCC 60.543 57.143 0.00 0.00 35.25 5.36
6264 8325 1.273098 ACTGGTACTCCCTCGGTTCAT 60.273 52.381 0.00 0.00 0.00 2.57
6302 8363 9.878599 GTTTTGGATATTTCAATATGGACTACG 57.121 33.333 0.00 0.00 31.96 3.51
6516 8580 8.207545 TGTAGGTCTGGCAAAAATAACAAAATT 58.792 29.630 0.00 0.00 0.00 1.82
6560 8625 6.403866 ACAATAGTCTTTTTGGCACATTGA 57.596 33.333 0.00 0.00 39.30 2.57
6561 8626 6.996509 ACAATAGTCTTTTTGGCACATTGAT 58.003 32.000 0.00 0.00 39.30 2.57
6619 8684 3.149981 GCTACTTGAACTTGAGGCCTTT 58.850 45.455 6.77 0.00 0.00 3.11
6701 8766 1.619807 GCACCCACCGTATACCAGGT 61.620 60.000 0.00 0.00 42.34 4.00
6704 8769 2.110578 ACCCACCGTATACCAGGTAAC 58.889 52.381 2.53 2.92 39.00 2.50
6709 8774 2.024080 ACCGTATACCAGGTAACCCTCA 60.024 50.000 2.53 0.00 39.89 3.86
6886 8954 6.850752 AAAGACAAATATTTGGGAACGGAT 57.149 33.333 27.43 8.03 42.34 4.18
6942 9010 3.258228 TTCATGCAGGTGCGCCTCT 62.258 57.895 18.11 0.63 44.97 3.69
7021 9089 4.324486 GCCCACCATATCCATGATGATACA 60.324 45.833 0.00 0.00 33.67 2.29
7027 9095 6.376299 ACCATATCCATGATGATACATGTTGC 59.624 38.462 2.30 0.00 44.00 4.17
7032 9100 4.098196 CCATGATGATACATGTTGCCACAA 59.902 41.667 2.30 0.00 44.00 3.33
7038 9106 6.058827 TGATACATGTTGCCACAATTATCG 57.941 37.500 2.30 0.00 35.38 2.92
7045 9113 4.083537 TGTTGCCACAATTATCGTCACTTC 60.084 41.667 0.00 0.00 0.00 3.01
7056 9124 6.961360 TTATCGTCACTTCCATGATAGACT 57.039 37.500 0.00 0.00 0.00 3.24
7168 9236 4.081476 CCTCATTTGTCCCCAAGGAATTTC 60.081 45.833 0.00 0.00 46.38 2.17
7191 9260 3.700863 TCTGCTACCATACTAACCCCT 57.299 47.619 0.00 0.00 0.00 4.79
7192 9261 3.573695 TCTGCTACCATACTAACCCCTC 58.426 50.000 0.00 0.00 0.00 4.30
7193 9262 3.206866 TCTGCTACCATACTAACCCCTCT 59.793 47.826 0.00 0.00 0.00 3.69
7194 9263 3.573695 TGCTACCATACTAACCCCTCTC 58.426 50.000 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 41 3.382865 GCATCCAAGGAGAAGGAAATTCC 59.617 47.826 3.29 3.29 38.84 3.01
55 60 1.072806 TCACTCAGCTTCAACCTGCAT 59.927 47.619 0.00 0.00 0.00 3.96
87 92 1.501741 CCCAAGACGACGCCAATTG 59.498 57.895 0.00 0.00 0.00 2.32
143 148 4.900635 AGTGGTAAGACAAACAAGCAAG 57.099 40.909 0.00 0.00 0.00 4.01
144 149 6.952773 AATAGTGGTAAGACAAACAAGCAA 57.047 33.333 0.00 0.00 0.00 3.91
165 170 6.808008 ACGAATTCATGTCTGAACTGAAAT 57.192 33.333 6.22 0.57 43.92 2.17
186 191 6.034683 GCTAAACTGAACTGACCAATACTACG 59.965 42.308 0.00 0.00 0.00 3.51
193 201 1.871039 GCGCTAAACTGAACTGACCAA 59.129 47.619 0.00 0.00 0.00 3.67
200 208 6.952935 AGCATATATAGCGCTAAACTGAAC 57.047 37.500 22.98 8.71 37.01 3.18
223 231 1.327303 GAACCAACAGGGCACATCAA 58.673 50.000 0.00 0.00 42.05 2.57
240 248 4.756642 CACACTGCCTGATTTACTTCTGAA 59.243 41.667 0.00 0.00 0.00 3.02
242 250 3.120060 GCACACTGCCTGATTTACTTCTG 60.120 47.826 0.00 0.00 37.42 3.02
243 251 3.077359 GCACACTGCCTGATTTACTTCT 58.923 45.455 0.00 0.00 37.42 2.85
244 252 3.477899 GCACACTGCCTGATTTACTTC 57.522 47.619 0.00 0.00 37.42 3.01
256 264 2.348411 ATAACCCATAGGCACACTGC 57.652 50.000 0.00 0.00 44.08 4.40
263 286 1.544759 CGGACCCAATAACCCATAGGC 60.545 57.143 0.00 0.00 36.11 3.93
268 291 0.621609 CTTCCGGACCCAATAACCCA 59.378 55.000 1.83 0.00 0.00 4.51
273 296 1.487558 GCCTTACTTCCGGACCCAATA 59.512 52.381 1.83 0.00 0.00 1.90
295 318 6.984474 ACGACAGAAACAGATCAAGAGTTTAA 59.016 34.615 0.00 0.00 35.77 1.52
339 362 1.816679 GGGTAATCGGTGGAACGGC 60.817 63.158 0.00 0.00 38.12 5.68
340 363 0.036199 TTGGGTAATCGGTGGAACGG 60.036 55.000 0.00 0.00 38.12 4.44
341 364 1.081094 GTTGGGTAATCGGTGGAACG 58.919 55.000 0.00 0.00 38.12 3.95
342 365 2.081462 CAGTTGGGTAATCGGTGGAAC 58.919 52.381 0.00 0.00 0.00 3.62
348 371 1.087771 GCGTCCAGTTGGGTAATCGG 61.088 60.000 0.00 0.00 38.11 4.18
355 378 1.300971 CTCACATGCGTCCAGTTGGG 61.301 60.000 0.00 0.00 35.41 4.12
377 400 3.067106 ACTCAACAAAGGATGTAGCACG 58.933 45.455 0.00 0.00 42.99 5.34
381 404 8.037758 AGTCAGATAACTCAACAAAGGATGTAG 58.962 37.037 0.00 0.00 42.99 2.74
426 449 0.616111 AGACTCGGCCACCTCATCTT 60.616 55.000 2.24 0.00 0.00 2.40
427 450 0.616111 AAGACTCGGCCACCTCATCT 60.616 55.000 2.24 0.00 0.00 2.90
428 451 0.460987 CAAGACTCGGCCACCTCATC 60.461 60.000 2.24 0.00 0.00 2.92
429 452 1.194781 ACAAGACTCGGCCACCTCAT 61.195 55.000 2.24 0.00 0.00 2.90
430 453 1.407656 AACAAGACTCGGCCACCTCA 61.408 55.000 2.24 0.00 0.00 3.86
431 454 0.250338 AAACAAGACTCGGCCACCTC 60.250 55.000 2.24 0.00 0.00 3.85
433 456 1.029681 AAAAACAAGACTCGGCCACC 58.970 50.000 2.24 0.00 0.00 4.61
434 457 1.269051 CCAAAAACAAGACTCGGCCAC 60.269 52.381 2.24 0.00 0.00 5.01
435 458 1.028905 CCAAAAACAAGACTCGGCCA 58.971 50.000 2.24 0.00 0.00 5.36
437 460 3.974871 TTACCAAAAACAAGACTCGGC 57.025 42.857 0.00 0.00 0.00 5.54
438 461 6.128363 GGACTATTACCAAAAACAAGACTCGG 60.128 42.308 0.00 0.00 0.00 4.63
441 464 7.228706 CACTGGACTATTACCAAAAACAAGACT 59.771 37.037 0.00 0.00 36.95 3.24
442 465 7.227910 TCACTGGACTATTACCAAAAACAAGAC 59.772 37.037 0.00 0.00 36.95 3.01
443 466 7.284074 TCACTGGACTATTACCAAAAACAAGA 58.716 34.615 0.00 0.00 36.95 3.02
444 467 7.504924 TCACTGGACTATTACCAAAAACAAG 57.495 36.000 0.00 0.00 36.95 3.16
445 468 7.883391 TTCACTGGACTATTACCAAAAACAA 57.117 32.000 0.00 0.00 36.95 2.83
504 539 3.173151 GGGAAGAAATCACCCACCAAAT 58.827 45.455 0.00 0.00 42.81 2.32
525 560 0.179240 GAACAAGCGTGCAGACGATG 60.179 55.000 0.00 1.74 45.23 3.84
536 571 2.704193 GACGACGGACGAACAAGCG 61.704 63.158 6.90 0.00 45.77 4.68
548 583 1.189403 GAAATGCTACTCCGACGACG 58.811 55.000 0.00 0.00 39.43 5.12
609 644 5.072741 ACTGTATTGTGCTGGTCATTTCTT 58.927 37.500 0.00 0.00 0.00 2.52
693 728 2.188994 GCTGCTCTACTGGCCAGG 59.811 66.667 35.42 19.57 0.00 4.45
702 737 3.774528 CCGTGCTGGGCTGCTCTA 61.775 66.667 0.00 0.00 0.00 2.43
830 880 2.126618 TCGCTTGAGGTGTACGCG 60.127 61.111 3.53 3.53 44.63 6.01
831 881 2.434134 CGTCGCTTGAGGTGTACGC 61.434 63.158 0.00 0.00 0.00 4.42
833 883 2.092882 GGCGTCGCTTGAGGTGTAC 61.093 63.158 18.11 0.00 0.00 2.90
834 884 2.260434 GGCGTCGCTTGAGGTGTA 59.740 61.111 18.11 0.00 0.00 2.90
835 885 4.681978 GGGCGTCGCTTGAGGTGT 62.682 66.667 18.11 0.00 0.00 4.16
839 889 4.124351 TACCGGGCGTCGCTTGAG 62.124 66.667 18.11 6.37 37.59 3.02
840 890 4.424566 GTACCGGGCGTCGCTTGA 62.425 66.667 18.11 0.00 37.59 3.02
845 895 4.527157 GAGTCGTACCGGGCGTCG 62.527 72.222 17.84 11.03 38.88 5.12
846 896 4.185059 GGAGTCGTACCGGGCGTC 62.185 72.222 17.84 13.44 0.00 5.19
847 897 4.729918 AGGAGTCGTACCGGGCGT 62.730 66.667 17.84 2.58 0.00 5.68
848 898 3.885521 GAGGAGTCGTACCGGGCG 61.886 72.222 6.32 10.70 0.00 6.13
849 899 3.525545 GGAGGAGTCGTACCGGGC 61.526 72.222 6.32 0.00 0.00 6.13
850 900 1.823041 GAGGAGGAGTCGTACCGGG 60.823 68.421 6.32 0.00 0.00 5.73
851 901 2.178890 CGAGGAGGAGTCGTACCGG 61.179 68.421 0.00 0.00 32.62 5.28
852 902 2.821688 GCGAGGAGGAGTCGTACCG 61.822 68.421 0.00 0.00 39.69 4.02
853 903 2.479750 GGCGAGGAGGAGTCGTACC 61.480 68.421 0.00 0.00 39.69 3.34
854 904 1.451747 AGGCGAGGAGGAGTCGTAC 60.452 63.158 0.00 0.00 39.69 3.67
855 905 1.451567 CAGGCGAGGAGGAGTCGTA 60.452 63.158 0.00 0.00 39.69 3.43
856 906 2.752238 CAGGCGAGGAGGAGTCGT 60.752 66.667 0.00 0.00 39.69 4.34
857 907 4.200283 GCAGGCGAGGAGGAGTCG 62.200 72.222 0.00 0.00 40.50 4.18
858 908 2.291457 GAAGCAGGCGAGGAGGAGTC 62.291 65.000 0.00 0.00 0.00 3.36
859 909 2.284258 AAGCAGGCGAGGAGGAGT 60.284 61.111 0.00 0.00 0.00 3.85
917 1004 0.179234 TTGAACTCTGTCGGGTTGCA 59.821 50.000 0.00 0.00 0.00 4.08
938 1025 7.645340 TGTTGAAGTACTAGTACGAGTTTGAAC 59.355 37.037 23.87 21.13 40.80 3.18
940 1027 7.263100 TGTTGAAGTACTAGTACGAGTTTGA 57.737 36.000 23.87 7.45 40.80 2.69
941 1028 7.096312 GGTTGTTGAAGTACTAGTACGAGTTTG 60.096 40.741 23.87 0.00 40.80 2.93
942 1029 6.920210 GGTTGTTGAAGTACTAGTACGAGTTT 59.080 38.462 23.87 14.52 40.80 2.66
944 1031 5.532406 TGGTTGTTGAAGTACTAGTACGAGT 59.468 40.000 23.87 13.41 40.80 4.18
945 1032 6.005583 TGGTTGTTGAAGTACTAGTACGAG 57.994 41.667 23.87 0.91 40.80 4.18
946 1033 6.389830 TTGGTTGTTGAAGTACTAGTACGA 57.610 37.500 23.87 11.72 40.80 3.43
1487 1645 1.001974 TGGAACTCGACCACCATGAAG 59.998 52.381 0.00 0.00 32.03 3.02
1803 1961 2.876645 GAAGACGCCGTCGCTGAG 60.877 66.667 12.13 0.00 37.67 3.35
1823 1981 4.105727 CAGCTCATCTGGACGCAG 57.894 61.111 0.00 0.00 39.15 5.18
1945 2103 1.805945 GCCGCCTTGTACGAGTCAG 60.806 63.158 9.32 0.32 0.00 3.51
1982 2140 2.821688 GACGAGAGCGAGTACGGGG 61.822 68.421 0.00 0.00 41.64 5.73
2166 2340 4.276926 AGAAAAATCACCTGCAGAGAACAC 59.723 41.667 17.39 5.04 0.00 3.32
2174 2348 3.009473 AGCTAGGAGAAAAATCACCTGCA 59.991 43.478 5.25 0.00 32.95 4.41
2186 2360 2.573462 AGTTCCATGCAAGCTAGGAGAA 59.427 45.455 0.00 0.00 0.00 2.87
2219 2397 7.759489 AAATAATTGACAGAAAGTGCTACCA 57.241 32.000 0.00 0.00 0.00 3.25
2220 2398 8.082242 ACAAAATAATTGACAGAAAGTGCTACC 58.918 33.333 0.00 0.00 0.00 3.18
2221 2399 9.463443 AACAAAATAATTGACAGAAAGTGCTAC 57.537 29.630 0.00 0.00 0.00 3.58
2243 2421 7.453752 AGACCTCTAGTGTATTTACCTCAACAA 59.546 37.037 0.00 0.00 0.00 2.83
2244 2422 6.952358 AGACCTCTAGTGTATTTACCTCAACA 59.048 38.462 0.00 0.00 0.00 3.33
2245 2423 7.407393 AGACCTCTAGTGTATTTACCTCAAC 57.593 40.000 0.00 0.00 0.00 3.18
2325 2505 4.258702 ACAGTCTCGCAAGTTTAGTGAT 57.741 40.909 0.00 0.00 39.48 3.06
2426 2615 2.096657 GGGTTTTGTGCAAAAATGCGTT 59.903 40.909 2.11 0.00 41.37 4.84
3193 4671 9.731819 TGACGTAATTTAGAGATAGACAATGTC 57.268 33.333 5.02 5.02 0.00 3.06
3216 4694 4.826600 GCAACTGCGACATGTGAC 57.173 55.556 1.15 0.00 0.00 3.67
3237 4715 1.439353 CTCGCGCATAAGCCAACCAT 61.439 55.000 8.75 0.00 37.52 3.55
3805 5286 9.703892 AATGTAAGCTTGTTTGTTATGCATAAA 57.296 25.926 20.46 4.86 0.00 1.40
3843 5324 5.047306 CAGTAGACCAATCCACACTCTACAA 60.047 44.000 0.00 0.00 37.05 2.41
3893 5392 6.292703 CCTTATATGCGAACTAAAAAGGACCG 60.293 42.308 0.00 0.00 35.34 4.79
3905 5404 6.417191 TTCAGTCAAACCTTATATGCGAAC 57.583 37.500 0.00 0.00 0.00 3.95
3907 5406 6.821160 TGAATTCAGTCAAACCTTATATGCGA 59.179 34.615 3.38 0.00 0.00 5.10
3908 5407 7.015226 TGAATTCAGTCAAACCTTATATGCG 57.985 36.000 3.38 0.00 0.00 4.73
3918 5417 4.848757 ACGAAGCTTGAATTCAGTCAAAC 58.151 39.130 2.10 0.27 37.08 2.93
3919 5418 6.612247 TTACGAAGCTTGAATTCAGTCAAA 57.388 33.333 2.10 0.00 37.08 2.69
3923 5422 6.619801 AACTTTACGAAGCTTGAATTCAGT 57.380 33.333 2.10 4.72 36.29 3.41
3929 5428 4.636648 TGGTCAAACTTTACGAAGCTTGAA 59.363 37.500 2.10 0.00 44.85 2.69
3968 5467 9.462174 TTGATTTTAGATTGTGAATGTTGACAC 57.538 29.630 0.00 0.00 37.51 3.67
3984 5483 9.534565 GACACATCTAGCAGTATTGATTTTAGA 57.465 33.333 0.00 0.00 0.00 2.10
3985 5484 9.317936 TGACACATCTAGCAGTATTGATTTTAG 57.682 33.333 0.00 0.00 0.00 1.85
3986 5485 9.836864 ATGACACATCTAGCAGTATTGATTTTA 57.163 29.630 0.00 0.00 0.00 1.52
3987 5486 8.618677 CATGACACATCTAGCAGTATTGATTTT 58.381 33.333 0.00 0.00 0.00 1.82
3988 5487 7.989170 TCATGACACATCTAGCAGTATTGATTT 59.011 33.333 0.00 0.00 0.00 2.17
3989 5488 7.440556 GTCATGACACATCTAGCAGTATTGATT 59.559 37.037 21.07 0.00 0.00 2.57
3990 5489 6.927936 GTCATGACACATCTAGCAGTATTGAT 59.072 38.462 21.07 0.00 0.00 2.57
3991 5490 6.097412 AGTCATGACACATCTAGCAGTATTGA 59.903 38.462 27.02 0.00 0.00 2.57
3992 5491 6.279123 AGTCATGACACATCTAGCAGTATTG 58.721 40.000 27.02 0.00 0.00 1.90
3993 5492 6.477053 AGTCATGACACATCTAGCAGTATT 57.523 37.500 27.02 0.00 0.00 1.89
3994 5493 6.477053 AAGTCATGACACATCTAGCAGTAT 57.523 37.500 27.02 0.00 0.00 2.12
3995 5494 5.921962 AAGTCATGACACATCTAGCAGTA 57.078 39.130 27.02 0.00 0.00 2.74
3996 5495 4.815533 AAGTCATGACACATCTAGCAGT 57.184 40.909 27.02 0.00 0.00 4.40
3997 5496 6.815641 ACTTTAAGTCATGACACATCTAGCAG 59.184 38.462 27.02 11.91 0.00 4.24
3998 5497 6.701340 ACTTTAAGTCATGACACATCTAGCA 58.299 36.000 27.02 1.16 0.00 3.49
3999 5498 7.602517 AACTTTAAGTCATGACACATCTAGC 57.397 36.000 27.02 0.00 0.00 3.42
4000 5499 9.208022 TGAAACTTTAAGTCATGACACATCTAG 57.792 33.333 27.02 16.90 0.00 2.43
4001 5500 9.725019 ATGAAACTTTAAGTCATGACACATCTA 57.275 29.630 27.02 7.86 30.84 1.98
4002 5501 8.627208 ATGAAACTTTAAGTCATGACACATCT 57.373 30.769 27.02 3.53 30.84 2.90
4029 5528 9.573166 AACATCTGCCATGCTAAAGTTATATAA 57.427 29.630 0.00 0.00 0.00 0.98
4033 5532 5.887598 TCAACATCTGCCATGCTAAAGTTAT 59.112 36.000 0.00 0.00 0.00 1.89
4034 5533 5.252547 TCAACATCTGCCATGCTAAAGTTA 58.747 37.500 0.00 0.00 0.00 2.24
4037 5536 4.913335 ATCAACATCTGCCATGCTAAAG 57.087 40.909 0.00 0.00 0.00 1.85
4109 5638 8.836413 CGGTCCTTTTTATTCTGCATATTAGAA 58.164 33.333 0.00 2.56 38.42 2.10
4113 5642 6.126409 TCCGGTCCTTTTTATTCTGCATATT 58.874 36.000 0.00 0.00 0.00 1.28
4120 5649 3.187112 TCCCTCCGGTCCTTTTTATTCT 58.813 45.455 0.00 0.00 0.00 2.40
4121 5650 3.054582 ACTCCCTCCGGTCCTTTTTATTC 60.055 47.826 0.00 0.00 0.00 1.75
4123 5652 2.558974 ACTCCCTCCGGTCCTTTTTAT 58.441 47.619 0.00 0.00 0.00 1.40
4168 5697 2.691409 TAGATGGCTTGGAGGAAACG 57.309 50.000 0.00 0.00 0.00 3.60
4243 5772 2.450609 ACGTCAATTAAGCCTCGTGT 57.549 45.000 0.00 0.00 0.00 4.49
4315 5844 1.240641 TGCACATGGCCCTGTAAACG 61.241 55.000 13.78 2.68 43.89 3.60
4352 5881 8.534333 TCACACATTAGAACAAGTAGCTAAAG 57.466 34.615 0.00 0.00 0.00 1.85
4378 5907 1.348250 CACACACAGTCACACGCAC 59.652 57.895 0.00 0.00 0.00 5.34
4379 5908 1.079474 ACACACACAGTCACACGCA 60.079 52.632 0.00 0.00 0.00 5.24
4380 5909 1.348250 CACACACACAGTCACACGC 59.652 57.895 0.00 0.00 0.00 5.34
4381 5910 0.739462 ACCACACACACAGTCACACG 60.739 55.000 0.00 0.00 0.00 4.49
4382 5911 1.931172 GTACCACACACACAGTCACAC 59.069 52.381 0.00 0.00 0.00 3.82
4383 5912 1.134640 GGTACCACACACACAGTCACA 60.135 52.381 7.15 0.00 0.00 3.58
4384 5913 1.134640 TGGTACCACACACACAGTCAC 60.135 52.381 11.60 0.00 0.00 3.67
4385 5914 1.196012 TGGTACCACACACACAGTCA 58.804 50.000 11.60 0.00 0.00 3.41
4386 5915 2.543777 ATGGTACCACACACACAGTC 57.456 50.000 19.09 0.00 0.00 3.51
4387 5916 3.644265 TCTAATGGTACCACACACACAGT 59.356 43.478 19.09 0.00 0.00 3.55
4388 5917 4.245660 CTCTAATGGTACCACACACACAG 58.754 47.826 19.09 6.78 0.00 3.66
4389 5918 3.007506 CCTCTAATGGTACCACACACACA 59.992 47.826 19.09 0.00 0.00 3.72
4390 5919 3.596214 CCTCTAATGGTACCACACACAC 58.404 50.000 19.09 0.00 0.00 3.82
4391 5920 2.027561 GCCTCTAATGGTACCACACACA 60.028 50.000 19.09 0.00 0.00 3.72
4392 5921 2.027561 TGCCTCTAATGGTACCACACAC 60.028 50.000 19.09 3.97 0.00 3.82
4503 6032 6.230472 TGTATATACACATTGCTCATGACCC 58.770 40.000 11.62 0.00 36.24 4.46
4532 6061 4.151867 CGAGATAGCGCCCTATTTAAAACC 59.848 45.833 2.29 0.00 34.44 3.27
4628 6174 7.410087 GCAAATAGCGATAAAAGCATTAGCATG 60.410 37.037 0.00 0.00 45.49 4.06
4629 6175 6.583806 GCAAATAGCGATAAAAGCATTAGCAT 59.416 34.615 0.00 0.00 45.49 3.79
4706 6254 6.593382 GGTGGCAGCAAATGATAAAATAACAA 59.407 34.615 12.58 0.00 0.00 2.83
4713 6261 3.577848 ACAAGGTGGCAGCAAATGATAAA 59.422 39.130 20.04 0.00 0.00 1.40
4802 6507 1.200020 GGCAATGAAAAGTGTCCCTCG 59.800 52.381 0.00 0.00 0.00 4.63
4851 6604 4.585879 AGCCGGTTTAAGTGTTGTGATAT 58.414 39.130 1.90 0.00 0.00 1.63
4865 6618 4.572795 CCAAAATAACACAAAAGCCGGTTT 59.427 37.500 1.90 0.00 0.00 3.27
5020 6785 8.762481 ATAGGTGAAGTACTGATACATGTACA 57.238 34.615 7.96 0.00 40.84 2.90
5073 6838 4.535781 TGCCCATATGCTAACACTCAAAT 58.464 39.130 0.00 0.00 0.00 2.32
5143 6908 5.520748 ACAAAATCACCCTCATCCTAACT 57.479 39.130 0.00 0.00 0.00 2.24
5144 6909 5.710099 TCAACAAAATCACCCTCATCCTAAC 59.290 40.000 0.00 0.00 0.00 2.34
5145 6910 5.886609 TCAACAAAATCACCCTCATCCTAA 58.113 37.500 0.00 0.00 0.00 2.69
5146 6911 5.512942 TCAACAAAATCACCCTCATCCTA 57.487 39.130 0.00 0.00 0.00 2.94
5147 6912 4.387026 TCAACAAAATCACCCTCATCCT 57.613 40.909 0.00 0.00 0.00 3.24
5148 6913 5.467035 TTTCAACAAAATCACCCTCATCC 57.533 39.130 0.00 0.00 0.00 3.51
5152 6917 9.750125 GGATATATTTTCAACAAAATCACCCTC 57.250 33.333 0.00 0.00 40.69 4.30
5153 6918 9.265862 TGGATATATTTTCAACAAAATCACCCT 57.734 29.630 0.00 0.00 40.69 4.34
5154 6919 9.883142 TTGGATATATTTTCAACAAAATCACCC 57.117 29.630 0.00 0.00 40.69 4.61
5163 6928 9.699410 AGAGTGGATTTGGATATATTTTCAACA 57.301 29.630 0.00 0.00 0.00 3.33
5174 6939 8.877195 GGGTATAGTTAAGAGTGGATTTGGATA 58.123 37.037 0.00 0.00 0.00 2.59
5175 6940 7.572861 AGGGTATAGTTAAGAGTGGATTTGGAT 59.427 37.037 0.00 0.00 0.00 3.41
5176 6941 6.906901 AGGGTATAGTTAAGAGTGGATTTGGA 59.093 38.462 0.00 0.00 0.00 3.53
5177 6942 7.138054 AGGGTATAGTTAAGAGTGGATTTGG 57.862 40.000 0.00 0.00 0.00 3.28
5178 6943 9.462606 AAAAGGGTATAGTTAAGAGTGGATTTG 57.537 33.333 0.00 0.00 0.00 2.32
5179 6944 9.462606 CAAAAGGGTATAGTTAAGAGTGGATTT 57.537 33.333 0.00 0.00 0.00 2.17
5180 6945 8.053355 CCAAAAGGGTATAGTTAAGAGTGGATT 58.947 37.037 0.00 0.00 0.00 3.01
5181 6946 7.574607 CCAAAAGGGTATAGTTAAGAGTGGAT 58.425 38.462 0.00 0.00 0.00 3.41
5182 6947 6.577638 GCCAAAAGGGTATAGTTAAGAGTGGA 60.578 42.308 0.00 0.00 39.65 4.02
5183 6948 5.589050 GCCAAAAGGGTATAGTTAAGAGTGG 59.411 44.000 0.00 0.00 39.65 4.00
5184 6949 5.589050 GGCCAAAAGGGTATAGTTAAGAGTG 59.411 44.000 0.00 0.00 39.65 3.51
5185 6950 5.491439 AGGCCAAAAGGGTATAGTTAAGAGT 59.509 40.000 5.01 0.00 39.65 3.24
5186 6951 5.823045 CAGGCCAAAAGGGTATAGTTAAGAG 59.177 44.000 5.01 0.00 39.65 2.85
5187 6952 5.252164 ACAGGCCAAAAGGGTATAGTTAAGA 59.748 40.000 5.01 0.00 39.65 2.10
5188 6953 5.506708 ACAGGCCAAAAGGGTATAGTTAAG 58.493 41.667 5.01 0.00 39.65 1.85
5189 6954 5.523883 ACAGGCCAAAAGGGTATAGTTAA 57.476 39.130 5.01 0.00 39.65 2.01
5190 6955 5.523883 AACAGGCCAAAAGGGTATAGTTA 57.476 39.130 5.01 0.00 39.65 2.24
5191 6956 4.397919 AACAGGCCAAAAGGGTATAGTT 57.602 40.909 5.01 0.00 39.65 2.24
5192 6957 4.397919 AAACAGGCCAAAAGGGTATAGT 57.602 40.909 5.01 0.00 39.65 2.12
5193 6958 5.357032 CAGTAAACAGGCCAAAAGGGTATAG 59.643 44.000 5.01 0.00 39.65 1.31
5194 6959 5.014333 TCAGTAAACAGGCCAAAAGGGTATA 59.986 40.000 5.01 0.00 39.65 1.47
5195 6960 4.086457 CAGTAAACAGGCCAAAAGGGTAT 58.914 43.478 5.01 0.00 39.65 2.73
5196 6961 3.138653 TCAGTAAACAGGCCAAAAGGGTA 59.861 43.478 5.01 0.00 39.65 3.69
5197 6962 2.091555 TCAGTAAACAGGCCAAAAGGGT 60.092 45.455 5.01 0.00 39.65 4.34
5198 6963 2.593026 TCAGTAAACAGGCCAAAAGGG 58.407 47.619 5.01 0.00 40.85 3.95
5199 6964 4.142381 GCTATCAGTAAACAGGCCAAAAGG 60.142 45.833 5.01 0.00 0.00 3.11
5200 6965 4.702131 AGCTATCAGTAAACAGGCCAAAAG 59.298 41.667 5.01 0.00 0.00 2.27
5201 6966 4.662278 AGCTATCAGTAAACAGGCCAAAA 58.338 39.130 5.01 0.00 0.00 2.44
5202 6967 4.301072 AGCTATCAGTAAACAGGCCAAA 57.699 40.909 5.01 0.00 0.00 3.28
5203 6968 4.469945 ACTAGCTATCAGTAAACAGGCCAA 59.530 41.667 5.01 0.00 0.00 4.52
5204 6969 4.030913 ACTAGCTATCAGTAAACAGGCCA 58.969 43.478 5.01 0.00 0.00 5.36
5205 6970 4.674281 ACTAGCTATCAGTAAACAGGCC 57.326 45.455 0.00 0.00 0.00 5.19
5206 6971 8.664211 AATAAACTAGCTATCAGTAAACAGGC 57.336 34.615 0.00 0.00 0.00 4.85
5350 7356 6.049149 TGGCAATAGAGTAGCAGATAACAAC 58.951 40.000 0.00 0.00 0.00 3.32
5506 7517 9.110382 ACTGCATCCTATTAATTAATCTCCTCT 57.890 33.333 13.95 0.00 0.00 3.69
5527 7538 7.817418 AAGAGGAATAAAAACAGTAACTGCA 57.183 32.000 0.00 0.00 34.37 4.41
5534 7545 5.365314 TGCCCAAAAGAGGAATAAAAACAGT 59.635 36.000 0.00 0.00 0.00 3.55
5538 7549 7.066404 GTGTTTTGCCCAAAAGAGGAATAAAAA 59.934 33.333 6.44 0.00 40.53 1.94
5547 7558 3.119173 TGTCAGTGTTTTGCCCAAAAGAG 60.119 43.478 6.44 0.00 40.53 2.85
5642 7696 7.868415 AGTGACACTGTCTCAAGAACTAATAAC 59.132 37.037 7.47 0.00 33.15 1.89
6053 8113 5.414454 TGGACACAAGTAGCAAAACATATCC 59.586 40.000 0.00 0.00 0.00 2.59
6106 8166 6.104665 CCATGAGCCATAGTATCAGTACATG 58.895 44.000 0.00 0.00 33.09 3.21
6142 8202 0.674581 TCAGGCAGCTCGTGAAATGG 60.675 55.000 6.22 0.00 36.72 3.16
6302 8363 4.304110 TGTTCACTCATTTCGGACTGTAC 58.696 43.478 0.00 0.00 0.00 2.90
6444 8508 1.601903 TGCAGGCAGTTAAAACACTCG 59.398 47.619 0.00 0.00 0.00 4.18
6516 8580 2.527497 TGGAAGCATTTTGGAGCATCA 58.473 42.857 0.00 0.00 36.25 3.07
6569 8634 4.141287 ACAATCATTTCGTGGAGGTTTGA 58.859 39.130 0.00 0.00 0.00 2.69
6715 8780 7.001073 GGAGAAAGTAGAAATGAGGGCAATAT 58.999 38.462 0.00 0.00 0.00 1.28
6727 8792 4.693042 TTGGGAACGGAGAAAGTAGAAA 57.307 40.909 0.00 0.00 0.00 2.52
6736 8801 7.832187 AGAAATACAAATATTTGGGAACGGAGA 59.168 33.333 27.43 6.00 40.42 3.71
6784 8849 9.495754 GTAGATTCACTCATTTTGCTTTGTATC 57.504 33.333 0.00 0.00 0.00 2.24
6860 8927 8.179509 TCCGTTCCCAAATATTTGTCTTTTAA 57.820 30.769 23.24 8.17 36.45 1.52
6974 9042 9.066892 GGCACCTATTCTATGACAAAATTATGA 57.933 33.333 0.00 0.00 0.00 2.15
7027 9095 4.875536 TCATGGAAGTGACGATAATTGTGG 59.124 41.667 0.00 0.00 0.00 4.17
7032 9100 7.531857 AGTCTATCATGGAAGTGACGATAAT 57.468 36.000 0.00 0.00 0.00 1.28
7071 9139 5.808366 AGATACATCCGTGACATTATGGT 57.192 39.130 0.00 0.00 0.00 3.55
7117 9185 7.494922 AGGCATTAAACACCCAATATTTTCT 57.505 32.000 0.00 0.00 0.00 2.52
7118 9186 9.660180 TTTAGGCATTAAACACCCAATATTTTC 57.340 29.630 0.00 0.00 0.00 2.29
7168 9236 4.409247 AGGGGTTAGTATGGTAGCAGAAAG 59.591 45.833 0.00 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.