Multiple sequence alignment - TraesCS3A01G161900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G161900 chr3A 100.000 2396 0 0 1 2396 164368931 164371326 0.000000e+00 4425.0
1 TraesCS3A01G161900 chr6A 91.929 793 55 5 1310 2096 233780762 233781551 0.000000e+00 1101.0
2 TraesCS3A01G161900 chr6A 91.801 744 52 7 1356 2095 307210139 307209401 0.000000e+00 1027.0
3 TraesCS3A01G161900 chr6A 85.319 361 33 3 712 1072 233780260 233780600 2.930000e-94 355.0
4 TraesCS3A01G161900 chr6A 86.207 261 28 2 1310 1562 203224302 203224042 2.350000e-70 276.0
5 TraesCS3A01G161900 chr6A 87.660 235 25 3 2162 2396 230695302 230695072 1.090000e-68 270.0
6 TraesCS3A01G161900 chr6A 86.321 212 19 5 531 738 203225078 203224873 3.100000e-54 222.0
7 TraesCS3A01G161900 chr6A 82.022 178 23 6 1329 1498 128041816 128041640 2.480000e-30 143.0
8 TraesCS3A01G161900 chr2A 91.583 796 57 6 1310 2099 456643645 456642854 0.000000e+00 1090.0
9 TraesCS3A01G161900 chr2A 91.304 299 24 2 2099 2396 401916426 401916723 7.970000e-110 407.0
10 TraesCS3A01G161900 chr2A 91.304 299 24 2 2099 2396 403874321 403874618 7.970000e-110 407.0
11 TraesCS3A01G161900 chr4B 90.741 702 50 7 1310 1999 85871172 85871870 0.000000e+00 922.0
12 TraesCS3A01G161900 chr4B 88.308 727 45 15 1310 1999 85895561 85896284 0.000000e+00 835.0
13 TraesCS3A01G161900 chr4B 85.390 794 37 29 1310 2099 152080890 152081608 0.000000e+00 750.0
14 TraesCS3A01G161900 chr4B 86.581 626 57 12 712 1312 152080320 152080943 0.000000e+00 665.0
15 TraesCS3A01G161900 chr4B 83.508 764 63 29 538 1253 287376213 287376961 0.000000e+00 654.0
16 TraesCS3A01G161900 chr4B 86.023 601 66 11 712 1307 85870633 85871220 1.560000e-176 628.0
17 TraesCS3A01G161900 chr4B 85.904 603 66 12 712 1307 85895019 85895609 2.020000e-175 625.0
18 TraesCS3A01G161900 chr4B 85.957 235 29 3 2162 2396 428396228 428396458 5.110000e-62 248.0
19 TraesCS3A01G161900 chr4B 80.827 266 33 10 944 1198 349451275 349451533 2.430000e-45 193.0
20 TraesCS3A01G161900 chr4B 88.679 159 15 1 881 1039 514177639 514177794 8.740000e-45 191.0
21 TraesCS3A01G161900 chr4B 98.571 70 1 0 2030 2099 85871873 85871942 8.990000e-25 124.0
22 TraesCS3A01G161900 chr4B 95.714 70 3 0 2030 2099 85896287 85896356 1.950000e-21 113.0
23 TraesCS3A01G161900 chr3B 90.469 703 52 7 1310 2000 391142098 391142797 0.000000e+00 913.0
24 TraesCS3A01G161900 chr3B 85.920 625 54 17 712 1312 455494215 455493601 9.340000e-179 636.0
25 TraesCS3A01G161900 chr3B 85.828 628 54 18 715 1312 648413129 648412507 3.360000e-178 634.0
26 TraesCS3A01G161900 chr3B 85.763 590 52 12 712 1274 279514878 279515462 1.590000e-166 595.0
27 TraesCS3A01G161900 chr3B 85.106 564 58 14 712 1253 622118800 622118241 9.680000e-154 553.0
28 TraesCS3A01G161900 chr1D 96.660 539 18 0 1 539 332697890 332698428 0.000000e+00 896.0
29 TraesCS3A01G161900 chr5D 96.097 538 21 0 2 539 99508567 99509104 0.000000e+00 878.0
30 TraesCS3A01G161900 chr5D 95.918 539 22 0 1 539 127039082 127038544 0.000000e+00 874.0
31 TraesCS3A01G161900 chr5D 87.961 407 44 5 712 1114 47672369 47671964 2.160000e-130 475.0
32 TraesCS3A01G161900 chr5D 89.305 187 15 3 539 720 47672578 47672392 1.850000e-56 230.0
33 TraesCS3A01G161900 chr7D 95.918 539 22 0 1 539 397526387 397525849 0.000000e+00 874.0
34 TraesCS3A01G161900 chr7D 87.958 191 22 1 530 720 46351249 46351438 8.620000e-55 224.0
35 TraesCS3A01G161900 chr6D 95.918 539 22 0 1 539 104644388 104644926 0.000000e+00 874.0
36 TraesCS3A01G161900 chr6D 95.733 539 23 0 1 539 110993076 110992538 0.000000e+00 869.0
37 TraesCS3A01G161900 chr6D 82.418 182 23 6 1329 1502 178681971 178681791 1.480000e-32 150.0
38 TraesCS3A01G161900 chr3D 95.918 539 22 0 1 539 402704337 402703799 0.000000e+00 874.0
39 TraesCS3A01G161900 chr3D 81.013 79 15 0 721 799 401018476 401018554 1.990000e-06 63.9
40 TraesCS3A01G161900 chr4D 95.733 539 23 0 1 539 20401791 20402329 0.000000e+00 869.0
41 TraesCS3A01G161900 chr4D 95.741 540 22 1 1 539 394119410 394118871 0.000000e+00 869.0
42 TraesCS3A01G161900 chr2B 86.683 796 50 19 1310 2099 388574669 388575414 0.000000e+00 832.0
43 TraesCS3A01G161900 chr2B 86.073 797 54 21 1310 2099 746309111 746309857 0.000000e+00 804.0
44 TraesCS3A01G161900 chr2B 85.561 651 61 16 539 1158 368948119 368947471 0.000000e+00 651.0
45 TraesCS3A01G161900 chr2B 85.875 623 58 12 712 1309 746308544 746309161 9.340000e-179 636.0
46 TraesCS3A01G161900 chr2B 94.792 384 18 1 1718 2099 368946953 368946570 4.410000e-167 597.0
47 TraesCS3A01G161900 chr2B 90.135 446 32 4 1313 1748 368947397 368946954 9.610000e-159 569.0
48 TraesCS3A01G161900 chr2B 91.611 298 22 2 2099 2396 331221261 331220967 2.220000e-110 409.0
49 TraesCS3A01G161900 chr2B 85.235 298 38 5 2099 2396 364685138 364684847 3.870000e-78 302.0
50 TraesCS3A01G161900 chr2B 85.366 287 33 3 1310 1588 270740221 270740506 3.010000e-74 289.0
51 TraesCS3A01G161900 chr1A 92.746 579 32 6 1528 2099 251161656 251161081 0.000000e+00 828.0
52 TraesCS3A01G161900 chr1A 85.319 361 33 4 712 1072 251162317 251161977 2.930000e-94 355.0
53 TraesCS3A01G161900 chr1A 90.741 162 15 0 1310 1471 251161815 251161654 1.440000e-52 217.0
54 TraesCS3A01G161900 chr7B 86.415 795 46 28 1310 2098 345993438 345992700 0.000000e+00 813.0
55 TraesCS3A01G161900 chr7B 86.762 627 52 15 712 1312 345994006 345993385 0.000000e+00 669.0
56 TraesCS3A01G161900 chr7B 86.124 627 56 16 712 1312 20341731 20342352 0.000000e+00 647.0
57 TraesCS3A01G161900 chr7B 85.441 261 34 3 2099 2359 246263651 246263907 3.930000e-68 268.0
58 TraesCS3A01G161900 chr7B 86.383 235 28 3 2162 2396 548310529 548310299 1.100000e-63 254.0
59 TraesCS3A01G161900 chr7B 89.011 182 18 1 532 711 417038086 417038267 8.620000e-55 224.0
60 TraesCS3A01G161900 chr7B 84.615 182 20 2 1310 1491 336260605 336260432 8.800000e-40 174.0
61 TraesCS3A01G161900 chr7A 90.879 603 45 6 1311 1907 228298893 228298295 0.000000e+00 800.0
62 TraesCS3A01G161900 chr7A 85.284 598 57 17 705 1274 240669052 240669646 2.650000e-164 588.0
63 TraesCS3A01G161900 chr7A 89.691 194 14 6 531 723 418098579 418098391 2.380000e-60 243.0
64 TraesCS3A01G161900 chr5B 85.768 794 55 19 1313 2099 389241211 389240469 0.000000e+00 787.0
65 TraesCS3A01G161900 chr5B 89.683 504 46 4 1310 1809 239449826 239450327 2.600000e-179 638.0
66 TraesCS3A01G161900 chr5B 85.552 616 68 12 712 1307 106275172 106274558 2.020000e-175 625.0
67 TraesCS3A01G161900 chr5B 85.440 625 53 18 715 1312 389241774 389241161 1.220000e-172 616.0
68 TraesCS3A01G161900 chr5B 85.884 588 53 15 712 1274 570954806 570954224 1.230000e-167 599.0
69 TraesCS3A01G161900 chr5B 85.859 297 37 4 2100 2396 120210693 120210984 6.430000e-81 311.0
70 TraesCS3A01G161900 chr5B 86.853 251 26 6 2113 2362 247443049 247443293 8.440000e-70 274.0
71 TraesCS3A01G161900 chr5B 83.557 298 34 7 2099 2396 148371788 148372070 5.080000e-67 265.0
72 TraesCS3A01G161900 chr5B 83.740 246 36 3 2099 2344 205571570 205571811 1.850000e-56 230.0
73 TraesCS3A01G161900 chr5B 82.969 229 18 11 1105 1312 239449651 239449879 1.130000e-43 187.0
74 TraesCS3A01G161900 chr5B 84.916 179 19 2 1310 1488 22032948 22033118 8.800000e-40 174.0
75 TraesCS3A01G161900 chr6B 85.678 796 55 19 1311 2098 185006758 185006014 0.000000e+00 784.0
76 TraesCS3A01G161900 chr6B 85.096 624 59 17 715 1312 185007321 185006706 7.320000e-170 606.0
77 TraesCS3A01G161900 chr6B 85.570 298 39 3 2099 2396 467157950 467158243 2.310000e-80 309.0
78 TraesCS3A01G161900 chr6B 86.809 235 27 3 2162 2396 281549501 281549271 2.360000e-65 259.0
79 TraesCS3A01G161900 chr6B 88.083 193 20 3 529 720 539541409 539541219 2.400000e-55 226.0
80 TraesCS3A01G161900 chr6B 82.710 214 19 8 1117 1312 539540843 539540630 8.800000e-40 174.0
81 TraesCS3A01G161900 chr1B 82.653 784 70 31 518 1253 453015412 453016177 3.360000e-178 634.0
82 TraesCS3A01G161900 chr1B 91.275 298 25 1 2099 2396 425354900 425355196 2.870000e-109 405.0
83 TraesCS3A01G161900 chr1B 86.063 287 31 3 1310 1588 299547736 299548021 1.390000e-77 300.0
84 TraesCS3A01G161900 chr1B 85.957 235 29 3 2162 2396 212723127 212723357 5.110000e-62 248.0
85 TraesCS3A01G161900 chr1B 80.617 227 26 8 1104 1312 335558368 335558142 2.470000e-35 159.0
86 TraesCS3A01G161900 chr5A 86.047 301 37 4 2097 2396 259090954 259090658 3.840000e-83 318.0
87 TraesCS3A01G161900 chr5A 88.506 261 22 2 1310 1562 601608527 601608267 2.310000e-80 309.0
88 TraesCS3A01G161900 chr4A 80.193 207 19 10 1069 1254 690247707 690247502 4.150000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G161900 chr3A 164368931 164371326 2395 False 4425.000000 4425 100.000000 1 2396 1 chr3A.!!$F1 2395
1 TraesCS3A01G161900 chr6A 307209401 307210139 738 True 1027.000000 1027 91.801000 1356 2095 1 chr6A.!!$R3 739
2 TraesCS3A01G161900 chr6A 233780260 233781551 1291 False 728.000000 1101 88.624000 712 2096 2 chr6A.!!$F1 1384
3 TraesCS3A01G161900 chr6A 203224042 203225078 1036 True 249.000000 276 86.264000 531 1562 2 chr6A.!!$R4 1031
4 TraesCS3A01G161900 chr2A 456642854 456643645 791 True 1090.000000 1090 91.583000 1310 2099 1 chr2A.!!$R1 789
5 TraesCS3A01G161900 chr4B 152080320 152081608 1288 False 707.500000 750 85.985500 712 2099 2 chr4B.!!$F7 1387
6 TraesCS3A01G161900 chr4B 287376213 287376961 748 False 654.000000 654 83.508000 538 1253 1 chr4B.!!$F1 715
7 TraesCS3A01G161900 chr4B 85870633 85871942 1309 False 558.000000 922 91.778333 712 2099 3 chr4B.!!$F5 1387
8 TraesCS3A01G161900 chr4B 85895019 85896356 1337 False 524.333333 835 89.975333 712 2099 3 chr4B.!!$F6 1387
9 TraesCS3A01G161900 chr3B 391142098 391142797 699 False 913.000000 913 90.469000 1310 2000 1 chr3B.!!$F2 690
10 TraesCS3A01G161900 chr3B 455493601 455494215 614 True 636.000000 636 85.920000 712 1312 1 chr3B.!!$R1 600
11 TraesCS3A01G161900 chr3B 648412507 648413129 622 True 634.000000 634 85.828000 715 1312 1 chr3B.!!$R3 597
12 TraesCS3A01G161900 chr3B 279514878 279515462 584 False 595.000000 595 85.763000 712 1274 1 chr3B.!!$F1 562
13 TraesCS3A01G161900 chr3B 622118241 622118800 559 True 553.000000 553 85.106000 712 1253 1 chr3B.!!$R2 541
14 TraesCS3A01G161900 chr1D 332697890 332698428 538 False 896.000000 896 96.660000 1 539 1 chr1D.!!$F1 538
15 TraesCS3A01G161900 chr5D 99508567 99509104 537 False 878.000000 878 96.097000 2 539 1 chr5D.!!$F1 537
16 TraesCS3A01G161900 chr5D 127038544 127039082 538 True 874.000000 874 95.918000 1 539 1 chr5D.!!$R1 538
17 TraesCS3A01G161900 chr5D 47671964 47672578 614 True 352.500000 475 88.633000 539 1114 2 chr5D.!!$R2 575
18 TraesCS3A01G161900 chr7D 397525849 397526387 538 True 874.000000 874 95.918000 1 539 1 chr7D.!!$R1 538
19 TraesCS3A01G161900 chr6D 104644388 104644926 538 False 874.000000 874 95.918000 1 539 1 chr6D.!!$F1 538
20 TraesCS3A01G161900 chr6D 110992538 110993076 538 True 869.000000 869 95.733000 1 539 1 chr6D.!!$R1 538
21 TraesCS3A01G161900 chr3D 402703799 402704337 538 True 874.000000 874 95.918000 1 539 1 chr3D.!!$R1 538
22 TraesCS3A01G161900 chr4D 20401791 20402329 538 False 869.000000 869 95.733000 1 539 1 chr4D.!!$F1 538
23 TraesCS3A01G161900 chr4D 394118871 394119410 539 True 869.000000 869 95.741000 1 539 1 chr4D.!!$R1 538
24 TraesCS3A01G161900 chr2B 388574669 388575414 745 False 832.000000 832 86.683000 1310 2099 1 chr2B.!!$F2 789
25 TraesCS3A01G161900 chr2B 746308544 746309857 1313 False 720.000000 804 85.974000 712 2099 2 chr2B.!!$F3 1387
26 TraesCS3A01G161900 chr2B 368946570 368948119 1549 True 605.666667 651 90.162667 539 2099 3 chr2B.!!$R3 1560
27 TraesCS3A01G161900 chr1A 251161081 251162317 1236 True 466.666667 828 89.602000 712 2099 3 chr1A.!!$R1 1387
28 TraesCS3A01G161900 chr7B 345992700 345994006 1306 True 741.000000 813 86.588500 712 2098 2 chr7B.!!$R3 1386
29 TraesCS3A01G161900 chr7B 20341731 20342352 621 False 647.000000 647 86.124000 712 1312 1 chr7B.!!$F1 600
30 TraesCS3A01G161900 chr7A 228298295 228298893 598 True 800.000000 800 90.879000 1311 1907 1 chr7A.!!$R1 596
31 TraesCS3A01G161900 chr7A 240669052 240669646 594 False 588.000000 588 85.284000 705 1274 1 chr7A.!!$F1 569
32 TraesCS3A01G161900 chr5B 389240469 389241774 1305 True 701.500000 787 85.604000 715 2099 2 chr5B.!!$R3 1384
33 TraesCS3A01G161900 chr5B 106274558 106275172 614 True 625.000000 625 85.552000 712 1307 1 chr5B.!!$R1 595
34 TraesCS3A01G161900 chr5B 570954224 570954806 582 True 599.000000 599 85.884000 712 1274 1 chr5B.!!$R2 562
35 TraesCS3A01G161900 chr5B 239449651 239450327 676 False 412.500000 638 86.326000 1105 1809 2 chr5B.!!$F6 704
36 TraesCS3A01G161900 chr6B 185006014 185007321 1307 True 695.000000 784 85.387000 715 2098 2 chr6B.!!$R2 1383
37 TraesCS3A01G161900 chr1B 453015412 453016177 765 False 634.000000 634 82.653000 518 1253 1 chr1B.!!$F4 735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
574 576 1.377725 CCAAATGGCGCAGAGACCT 60.378 57.895 10.83 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2303 2468 0.031043 CCAACAGTGTGTGCCACATG 59.969 55.0 0.0 0.0 46.32 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 3.670625 TGTGACACCTACACCAATTAGC 58.329 45.455 2.45 0.00 37.45 3.09
164 165 4.641094 CGTAGGTCAACCAGAGTAAGATCT 59.359 45.833 1.33 0.00 38.89 2.75
195 196 3.194116 GTGGTACGGTAATCCTGTTCTGA 59.806 47.826 0.00 0.00 0.00 3.27
213 214 7.217200 TGTTCTGAAAGTTATGTTGCTAGACT 58.783 34.615 0.00 0.00 33.76 3.24
226 227 5.593095 TGTTGCTAGACTATGACGAACCTAT 59.407 40.000 0.00 0.00 0.00 2.57
276 277 1.614996 TTCCGCAAAATGGCTTGAGA 58.385 45.000 0.00 0.00 0.00 3.27
377 378 8.365647 GCCATTGAGAATAAATGGATCTTCAAT 58.634 33.333 17.24 0.00 44.71 2.57
436 437 2.288666 AGCTCGACTTGTTGCAAAAGA 58.711 42.857 20.80 3.05 0.00 2.52
442 444 5.645624 TCGACTTGTTGCAAAAGATTTTCA 58.354 33.333 20.80 3.77 0.00 2.69
497 499 3.067601 TCTCATCCGTAGCGATGCTTAAA 59.932 43.478 0.00 0.00 40.44 1.52
574 576 1.377725 CCAAATGGCGCAGAGACCT 60.378 57.895 10.83 0.00 0.00 3.85
634 636 3.365220 GCAAGGACATATTCGATACTCGC 59.635 47.826 0.00 0.00 40.21 5.03
671 675 7.276218 CCATGTGTTAAACCATGCTATTTTGAG 59.724 37.037 9.18 0.00 0.00 3.02
703 711 3.122948 CACACTACGAAATCCGAGTTTGG 59.877 47.826 1.11 0.00 41.76 3.28
740 780 2.121291 TGACCCATTGCGCTAAATGA 57.879 45.000 19.00 0.00 39.46 2.57
746 786 2.162208 CCATTGCGCTAAATGACACTGT 59.838 45.455 19.00 0.00 39.46 3.55
756 796 4.589216 AAATGACACTGTGTCCCATTTG 57.411 40.909 31.58 0.00 46.40 2.32
818 861 9.385902 CAGTAACTGTGTTTGAGAAAATACATG 57.614 33.333 1.98 0.00 34.17 3.21
822 865 5.771469 TGTGTTTGAGAAAATACATGCAGG 58.229 37.500 0.00 0.00 30.51 4.85
916 961 7.035004 ATACAATTGTATCATGTGCAACAACC 58.965 34.615 22.70 0.00 43.65 3.77
1067 1112 7.159372 ACAACAACGGTAAGAGAAATGAGTAT 58.841 34.615 0.00 0.00 0.00 2.12
1081 1126 8.286191 AGAAATGAGTATCCATCAAAGAAACC 57.714 34.615 0.00 0.00 0.00 3.27
1186 1236 1.202463 ACATGCACATCCTACTCTCGC 60.202 52.381 0.00 0.00 0.00 5.03
1194 1244 3.215151 CATCCTACTCTCGCTTCTGGTA 58.785 50.000 0.00 0.00 0.00 3.25
1206 1275 3.682718 CGCTTCTGGTAATCCTGACCAAT 60.683 47.826 0.00 0.00 46.27 3.16
1254 1325 6.739565 GCATGCCCCTTCTTATTTATCCTTTG 60.740 42.308 6.36 0.00 0.00 2.77
1258 1329 7.724061 TGCCCCTTCTTATTTATCCTTTGATAC 59.276 37.037 0.00 0.00 33.19 2.24
1259 1330 7.724061 GCCCCTTCTTATTTATCCTTTGATACA 59.276 37.037 0.00 0.00 33.19 2.29
1260 1331 9.289782 CCCCTTCTTATTTATCCTTTGATACAG 57.710 37.037 0.00 0.00 33.19 2.74
1261 1332 9.289782 CCCTTCTTATTTATCCTTTGATACAGG 57.710 37.037 0.00 0.00 33.19 4.00
1269 1340 9.753674 ATTTATCCTTTGATACAGGAACTCAAA 57.246 29.630 0.00 0.00 43.93 2.69
1270 1341 8.561738 TTATCCTTTGATACAGGAACTCAAAC 57.438 34.615 0.00 0.00 43.93 2.93
1271 1342 5.935945 TCCTTTGATACAGGAACTCAAACA 58.064 37.500 0.00 0.00 37.51 2.83
1272 1343 5.997746 TCCTTTGATACAGGAACTCAAACAG 59.002 40.000 0.00 0.00 37.51 3.16
1273 1344 5.182001 CCTTTGATACAGGAACTCAAACAGG 59.818 44.000 0.00 0.00 34.60 4.00
1274 1345 5.560722 TTGATACAGGAACTCAAACAGGA 57.439 39.130 0.00 0.00 34.60 3.86
1275 1346 4.894784 TGATACAGGAACTCAAACAGGAC 58.105 43.478 0.00 0.00 34.60 3.85
1276 1347 4.593206 TGATACAGGAACTCAAACAGGACT 59.407 41.667 0.00 0.00 34.60 3.85
1277 1348 3.477210 ACAGGAACTCAAACAGGACTC 57.523 47.619 0.00 0.00 34.60 3.36
1278 1349 2.104963 ACAGGAACTCAAACAGGACTCC 59.895 50.000 0.00 0.00 34.60 3.85
1279 1350 1.700186 AGGAACTCAAACAGGACTCCC 59.300 52.381 0.00 0.00 0.00 4.30
1280 1351 1.700186 GGAACTCAAACAGGACTCCCT 59.300 52.381 0.00 0.00 45.74 4.20
1281 1352 2.289756 GGAACTCAAACAGGACTCCCTC 60.290 54.545 0.00 0.00 42.02 4.30
1282 1353 1.353091 ACTCAAACAGGACTCCCTCC 58.647 55.000 0.00 0.00 42.02 4.30
1283 1354 0.615850 CTCAAACAGGACTCCCTCCC 59.384 60.000 0.00 0.00 42.02 4.30
1284 1355 0.840722 TCAAACAGGACTCCCTCCCC 60.841 60.000 0.00 0.00 42.02 4.81
1285 1356 0.842467 CAAACAGGACTCCCTCCCCT 60.842 60.000 0.00 0.00 42.02 4.79
1286 1357 0.103876 AAACAGGACTCCCTCCCCTT 60.104 55.000 0.00 0.00 42.02 3.95
1287 1358 0.547954 AACAGGACTCCCTCCCCTTC 60.548 60.000 0.00 0.00 42.02 3.46
1288 1359 1.081092 CAGGACTCCCTCCCCTTCA 59.919 63.158 0.00 0.00 42.02 3.02
1289 1360 0.547712 CAGGACTCCCTCCCCTTCAA 60.548 60.000 0.00 0.00 42.02 2.69
1290 1361 0.547954 AGGACTCCCTCCCCTTCAAC 60.548 60.000 0.00 0.00 38.86 3.18
1291 1362 1.597461 GACTCCCTCCCCTTCAACG 59.403 63.158 0.00 0.00 0.00 4.10
1292 1363 1.152096 ACTCCCTCCCCTTCAACGT 60.152 57.895 0.00 0.00 0.00 3.99
1293 1364 1.296715 CTCCCTCCCCTTCAACGTG 59.703 63.158 0.00 0.00 0.00 4.49
1294 1365 2.185310 CTCCCTCCCCTTCAACGTGG 62.185 65.000 0.00 0.00 0.00 4.94
1295 1366 2.221299 CCCTCCCCTTCAACGTGGA 61.221 63.158 0.00 0.00 0.00 4.02
1296 1367 1.758592 CCTCCCCTTCAACGTGGAA 59.241 57.895 5.03 5.03 0.00 3.53
1297 1368 0.109723 CCTCCCCTTCAACGTGGAAA 59.890 55.000 6.86 0.00 0.00 3.13
1298 1369 1.271926 CCTCCCCTTCAACGTGGAAAT 60.272 52.381 6.86 0.00 0.00 2.17
1299 1370 2.084546 CTCCCCTTCAACGTGGAAATC 58.915 52.381 6.86 0.00 0.00 2.17
1300 1371 1.422024 TCCCCTTCAACGTGGAAATCA 59.578 47.619 6.86 0.00 0.00 2.57
1301 1372 2.158593 TCCCCTTCAACGTGGAAATCAA 60.159 45.455 6.86 0.00 0.00 2.57
1302 1373 2.825532 CCCCTTCAACGTGGAAATCAAT 59.174 45.455 6.86 0.00 0.00 2.57
1303 1374 3.119495 CCCCTTCAACGTGGAAATCAATC 60.119 47.826 6.86 0.00 0.00 2.67
1304 1375 3.758554 CCCTTCAACGTGGAAATCAATCT 59.241 43.478 6.86 0.00 0.00 2.40
1305 1376 4.142600 CCCTTCAACGTGGAAATCAATCTC 60.143 45.833 6.86 0.00 0.00 2.75
1306 1377 4.455533 CCTTCAACGTGGAAATCAATCTCA 59.544 41.667 6.86 0.00 0.00 3.27
1307 1378 5.048782 CCTTCAACGTGGAAATCAATCTCAA 60.049 40.000 6.86 0.00 0.00 3.02
1308 1379 5.611796 TCAACGTGGAAATCAATCTCAAG 57.388 39.130 0.00 0.00 0.00 3.02
1325 1400 3.817084 CTCAAGCAGGAACTCAAACATGA 59.183 43.478 0.00 0.00 34.60 3.07
1380 1464 0.322975 AGCAGTCAACATCTCGGCTT 59.677 50.000 0.00 0.00 29.44 4.35
1415 1499 1.376683 GAGTAATGTGGCCCGTGCA 60.377 57.895 0.00 0.00 40.13 4.57
1445 1529 3.610040 AAGTATGACAAGACCGATGCA 57.390 42.857 0.00 0.00 0.00 3.96
1446 1530 3.827008 AGTATGACAAGACCGATGCAT 57.173 42.857 0.00 0.00 0.00 3.96
1525 1618 1.051812 AGAGCCTACACACTGCACTT 58.948 50.000 0.00 0.00 0.00 3.16
1531 1624 3.141398 CCTACACACTGCACTTGACAAT 58.859 45.455 0.00 0.00 0.00 2.71
1610 1729 4.837860 ACTTGGCATCCAACCATAAAAAGA 59.162 37.500 0.00 0.00 38.75 2.52
1611 1730 5.047092 ACTTGGCATCCAACCATAAAAAGAG 60.047 40.000 0.00 0.00 38.75 2.85
1612 1731 4.671831 TGGCATCCAACCATAAAAAGAGA 58.328 39.130 0.00 0.00 30.29 3.10
1809 1970 3.449632 GCCTAGTCTAGAAAAAGAGCCG 58.550 50.000 8.56 0.00 0.00 5.52
1864 2025 6.228273 TGAAAGAAGCTATCAAAAGTGACG 57.772 37.500 0.00 0.00 36.31 4.35
1954 2118 6.739331 ATTGAAATAGTAGGCTAGCTCAGT 57.261 37.500 15.72 8.08 0.00 3.41
1974 2139 8.293157 GCTCAGTTTCAAATATTATTAGCTCCC 58.707 37.037 0.00 0.00 0.00 4.30
1995 2160 5.371176 TCCCCAATACTCCTATATGCAACAA 59.629 40.000 0.00 0.00 0.00 2.83
2099 2264 3.741476 CCAGCTTCAGCAACGCCC 61.741 66.667 0.75 0.00 45.16 6.13
2100 2265 2.670934 CAGCTTCAGCAACGCCCT 60.671 61.111 0.75 0.00 45.16 5.19
2101 2266 2.359230 AGCTTCAGCAACGCCCTC 60.359 61.111 0.75 0.00 45.16 4.30
2102 2267 2.359230 GCTTCAGCAACGCCCTCT 60.359 61.111 0.00 0.00 41.59 3.69
2103 2268 2.684843 GCTTCAGCAACGCCCTCTG 61.685 63.158 0.00 0.00 41.59 3.35
2104 2269 1.004560 CTTCAGCAACGCCCTCTGA 60.005 57.895 0.00 0.00 35.30 3.27
2105 2270 0.392193 CTTCAGCAACGCCCTCTGAT 60.392 55.000 0.00 0.00 36.81 2.90
2106 2271 0.901827 TTCAGCAACGCCCTCTGATA 59.098 50.000 0.00 0.00 36.81 2.15
2107 2272 0.901827 TCAGCAACGCCCTCTGATAA 59.098 50.000 0.00 0.00 32.48 1.75
2108 2273 1.486310 TCAGCAACGCCCTCTGATAAT 59.514 47.619 0.00 0.00 32.48 1.28
2109 2274 1.869767 CAGCAACGCCCTCTGATAATC 59.130 52.381 0.00 0.00 0.00 1.75
2110 2275 1.765314 AGCAACGCCCTCTGATAATCT 59.235 47.619 0.00 0.00 0.00 2.40
2111 2276 2.965831 AGCAACGCCCTCTGATAATCTA 59.034 45.455 0.00 0.00 0.00 1.98
2112 2277 3.388024 AGCAACGCCCTCTGATAATCTAA 59.612 43.478 0.00 0.00 0.00 2.10
2113 2278 4.040952 AGCAACGCCCTCTGATAATCTAAT 59.959 41.667 0.00 0.00 0.00 1.73
2114 2279 5.246203 AGCAACGCCCTCTGATAATCTAATA 59.754 40.000 0.00 0.00 0.00 0.98
2115 2280 5.932303 GCAACGCCCTCTGATAATCTAATAA 59.068 40.000 0.00 0.00 0.00 1.40
2116 2281 6.426937 GCAACGCCCTCTGATAATCTAATAAA 59.573 38.462 0.00 0.00 0.00 1.40
2117 2282 7.041372 GCAACGCCCTCTGATAATCTAATAAAA 60.041 37.037 0.00 0.00 0.00 1.52
2118 2283 7.964604 ACGCCCTCTGATAATCTAATAAAAC 57.035 36.000 0.00 0.00 0.00 2.43
2119 2284 7.506114 ACGCCCTCTGATAATCTAATAAAACA 58.494 34.615 0.00 0.00 0.00 2.83
2120 2285 8.157476 ACGCCCTCTGATAATCTAATAAAACAT 58.843 33.333 0.00 0.00 0.00 2.71
2121 2286 9.653287 CGCCCTCTGATAATCTAATAAAACATA 57.347 33.333 0.00 0.00 0.00 2.29
2137 2302 8.795842 ATAAAACATATAAGTTCCGTTGACCA 57.204 30.769 0.00 0.00 0.00 4.02
2138 2303 6.490566 AAACATATAAGTTCCGTTGACCAC 57.509 37.500 0.00 0.00 0.00 4.16
2139 2304 5.416271 ACATATAAGTTCCGTTGACCACT 57.584 39.130 0.00 0.00 0.00 4.00
2140 2305 5.801380 ACATATAAGTTCCGTTGACCACTT 58.199 37.500 0.00 0.00 33.95 3.16
2141 2306 6.938507 ACATATAAGTTCCGTTGACCACTTA 58.061 36.000 0.00 0.00 36.43 2.24
2142 2307 7.562135 ACATATAAGTTCCGTTGACCACTTAT 58.438 34.615 8.16 8.16 42.47 1.73
2143 2308 8.698210 ACATATAAGTTCCGTTGACCACTTATA 58.302 33.333 11.24 11.24 43.68 0.98
2144 2309 9.706691 CATATAAGTTCCGTTGACCACTTATAT 57.293 33.333 13.87 13.87 46.70 0.86
2148 2313 8.851541 AAGTTCCGTTGACCACTTATATTAAA 57.148 30.769 0.00 0.00 0.00 1.52
2149 2314 8.851541 AGTTCCGTTGACCACTTATATTAAAA 57.148 30.769 0.00 0.00 0.00 1.52
2150 2315 8.943002 AGTTCCGTTGACCACTTATATTAAAAG 58.057 33.333 0.00 0.00 0.00 2.27
2151 2316 7.852971 TCCGTTGACCACTTATATTAAAAGG 57.147 36.000 0.00 0.00 0.00 3.11
2152 2317 7.622713 TCCGTTGACCACTTATATTAAAAGGA 58.377 34.615 0.00 0.00 0.00 3.36
2153 2318 8.102047 TCCGTTGACCACTTATATTAAAAGGAA 58.898 33.333 0.00 0.00 0.00 3.36
2154 2319 8.732531 CCGTTGACCACTTATATTAAAAGGAAA 58.267 33.333 0.00 0.00 0.00 3.13
2155 2320 9.769093 CGTTGACCACTTATATTAAAAGGAAAG 57.231 33.333 0.00 0.00 0.00 2.62
2186 2351 7.881775 ACTTCTGTTACTTTGAAAATGACCT 57.118 32.000 0.00 0.00 0.00 3.85
2187 2352 7.931275 ACTTCTGTTACTTTGAAAATGACCTC 58.069 34.615 0.00 0.00 0.00 3.85
2188 2353 7.556275 ACTTCTGTTACTTTGAAAATGACCTCA 59.444 33.333 0.00 0.00 0.00 3.86
2189 2354 7.496529 TCTGTTACTTTGAAAATGACCTCAG 57.503 36.000 0.00 0.00 0.00 3.35
2190 2355 6.486657 TCTGTTACTTTGAAAATGACCTCAGG 59.513 38.462 0.00 0.00 0.00 3.86
2191 2356 5.009610 TGTTACTTTGAAAATGACCTCAGGC 59.990 40.000 0.00 0.00 0.00 4.85
2192 2357 3.837355 ACTTTGAAAATGACCTCAGGCT 58.163 40.909 0.00 0.00 0.00 4.58
2193 2358 3.823304 ACTTTGAAAATGACCTCAGGCTC 59.177 43.478 0.00 0.00 0.00 4.70
2194 2359 3.507162 TTGAAAATGACCTCAGGCTCA 57.493 42.857 0.00 0.00 0.00 4.26
2195 2360 3.507162 TGAAAATGACCTCAGGCTCAA 57.493 42.857 0.00 0.00 0.00 3.02
2196 2361 3.149196 TGAAAATGACCTCAGGCTCAAC 58.851 45.455 0.00 0.00 0.00 3.18
2197 2362 3.181440 TGAAAATGACCTCAGGCTCAACT 60.181 43.478 0.00 0.00 0.00 3.16
2198 2363 4.041567 TGAAAATGACCTCAGGCTCAACTA 59.958 41.667 0.00 0.00 0.00 2.24
2199 2364 4.640771 AAATGACCTCAGGCTCAACTAA 57.359 40.909 0.00 0.00 0.00 2.24
2200 2365 3.618690 ATGACCTCAGGCTCAACTAAC 57.381 47.619 0.00 0.00 0.00 2.34
2201 2366 2.325484 TGACCTCAGGCTCAACTAACA 58.675 47.619 0.00 0.00 0.00 2.41
2202 2367 2.906389 TGACCTCAGGCTCAACTAACAT 59.094 45.455 0.00 0.00 0.00 2.71
2203 2368 3.327757 TGACCTCAGGCTCAACTAACATT 59.672 43.478 0.00 0.00 0.00 2.71
2204 2369 4.202461 TGACCTCAGGCTCAACTAACATTT 60.202 41.667 0.00 0.00 0.00 2.32
2205 2370 4.074970 ACCTCAGGCTCAACTAACATTTG 58.925 43.478 0.00 0.00 0.00 2.32
2206 2371 4.074970 CCTCAGGCTCAACTAACATTTGT 58.925 43.478 0.00 0.00 0.00 2.83
2207 2372 4.520492 CCTCAGGCTCAACTAACATTTGTT 59.480 41.667 1.08 1.08 41.73 2.83
2208 2373 5.705441 CCTCAGGCTCAACTAACATTTGTTA 59.295 40.000 3.34 3.34 39.31 2.41
2209 2374 6.375455 CCTCAGGCTCAACTAACATTTGTTAT 59.625 38.462 3.76 0.00 39.49 1.89
2210 2375 7.094205 CCTCAGGCTCAACTAACATTTGTTATT 60.094 37.037 3.76 0.00 39.49 1.40
2211 2376 8.856153 TCAGGCTCAACTAACATTTGTTATTA 57.144 30.769 3.76 0.00 39.49 0.98
2212 2377 8.946085 TCAGGCTCAACTAACATTTGTTATTAG 58.054 33.333 3.76 0.00 39.49 1.73
2213 2378 8.730680 CAGGCTCAACTAACATTTGTTATTAGT 58.269 33.333 3.76 0.00 40.12 2.24
2214 2379 9.297037 AGGCTCAACTAACATTTGTTATTAGTT 57.703 29.630 3.76 4.39 45.55 2.24
2229 2394 9.944376 TTGTTATTAGTTAAGCTCATCAAGACT 57.056 29.630 0.00 0.00 0.00 3.24
2230 2395 9.371136 TGTTATTAGTTAAGCTCATCAAGACTG 57.629 33.333 0.00 0.00 0.00 3.51
2231 2396 9.587772 GTTATTAGTTAAGCTCATCAAGACTGA 57.412 33.333 0.00 0.00 35.56 3.41
2234 2399 9.678260 ATTAGTTAAGCTCATCAAGACTGAATT 57.322 29.630 0.00 0.00 34.49 2.17
2235 2400 7.608308 AGTTAAGCTCATCAAGACTGAATTC 57.392 36.000 0.00 0.00 34.49 2.17
2236 2401 6.597280 AGTTAAGCTCATCAAGACTGAATTCC 59.403 38.462 2.27 0.00 34.49 3.01
2237 2402 3.883669 AGCTCATCAAGACTGAATTCCC 58.116 45.455 2.27 0.00 34.49 3.97
2238 2403 3.522750 AGCTCATCAAGACTGAATTCCCT 59.477 43.478 2.27 0.00 34.49 4.20
2239 2404 3.626670 GCTCATCAAGACTGAATTCCCTG 59.373 47.826 2.27 0.00 34.49 4.45
2240 2405 4.624843 GCTCATCAAGACTGAATTCCCTGA 60.625 45.833 2.27 0.00 34.49 3.86
2241 2406 4.836825 TCATCAAGACTGAATTCCCTGAC 58.163 43.478 2.27 0.00 34.49 3.51
2242 2407 4.533707 TCATCAAGACTGAATTCCCTGACT 59.466 41.667 2.27 0.00 34.49 3.41
2243 2408 4.277515 TCAAGACTGAATTCCCTGACTG 57.722 45.455 2.27 0.00 0.00 3.51
2244 2409 3.903714 TCAAGACTGAATTCCCTGACTGA 59.096 43.478 2.27 0.00 0.00 3.41
2245 2410 3.971245 AGACTGAATTCCCTGACTGAC 57.029 47.619 2.27 0.00 0.00 3.51
2246 2411 2.569404 AGACTGAATTCCCTGACTGACC 59.431 50.000 2.27 0.00 0.00 4.02
2247 2412 2.303022 GACTGAATTCCCTGACTGACCA 59.697 50.000 2.27 0.00 0.00 4.02
2248 2413 2.915604 ACTGAATTCCCTGACTGACCAT 59.084 45.455 2.27 0.00 0.00 3.55
2249 2414 3.331889 ACTGAATTCCCTGACTGACCATT 59.668 43.478 2.27 0.00 0.00 3.16
2250 2415 4.536090 ACTGAATTCCCTGACTGACCATTA 59.464 41.667 2.27 0.00 0.00 1.90
2251 2416 5.014123 ACTGAATTCCCTGACTGACCATTAA 59.986 40.000 2.27 0.00 0.00 1.40
2252 2417 6.078456 TGAATTCCCTGACTGACCATTAAT 57.922 37.500 2.27 0.00 0.00 1.40
2253 2418 7.092444 ACTGAATTCCCTGACTGACCATTAATA 60.092 37.037 2.27 0.00 0.00 0.98
2254 2419 7.054124 TGAATTCCCTGACTGACCATTAATAC 58.946 38.462 2.27 0.00 0.00 1.89
2255 2420 6.575244 ATTCCCTGACTGACCATTAATACA 57.425 37.500 0.00 0.00 0.00 2.29
2256 2421 6.575244 TTCCCTGACTGACCATTAATACAT 57.425 37.500 0.00 0.00 0.00 2.29
2257 2422 6.174720 TCCCTGACTGACCATTAATACATC 57.825 41.667 0.00 0.00 0.00 3.06
2258 2423 5.665360 TCCCTGACTGACCATTAATACATCA 59.335 40.000 0.00 0.00 0.00 3.07
2259 2424 6.157820 TCCCTGACTGACCATTAATACATCAA 59.842 38.462 0.00 0.00 0.00 2.57
2260 2425 7.000472 CCCTGACTGACCATTAATACATCAAT 59.000 38.462 0.00 0.00 0.00 2.57
2261 2426 7.173907 CCCTGACTGACCATTAATACATCAATC 59.826 40.741 0.00 0.00 0.00 2.67
2262 2427 7.173907 CCTGACTGACCATTAATACATCAATCC 59.826 40.741 0.00 0.00 0.00 3.01
2263 2428 6.998074 TGACTGACCATTAATACATCAATCCC 59.002 38.462 0.00 0.00 0.00 3.85
2264 2429 6.306987 ACTGACCATTAATACATCAATCCCC 58.693 40.000 0.00 0.00 0.00 4.81
2265 2430 6.126215 ACTGACCATTAATACATCAATCCCCA 60.126 38.462 0.00 0.00 0.00 4.96
2266 2431 6.068010 TGACCATTAATACATCAATCCCCAC 58.932 40.000 0.00 0.00 0.00 4.61
2267 2432 6.024563 ACCATTAATACATCAATCCCCACA 57.975 37.500 0.00 0.00 0.00 4.17
2268 2433 5.833131 ACCATTAATACATCAATCCCCACAC 59.167 40.000 0.00 0.00 0.00 3.82
2269 2434 6.070656 CCATTAATACATCAATCCCCACACT 58.929 40.000 0.00 0.00 0.00 3.55
2270 2435 6.550854 CCATTAATACATCAATCCCCACACTT 59.449 38.462 0.00 0.00 0.00 3.16
2271 2436 7.255590 CCATTAATACATCAATCCCCACACTTC 60.256 40.741 0.00 0.00 0.00 3.01
2272 2437 5.456921 AATACATCAATCCCCACACTTCT 57.543 39.130 0.00 0.00 0.00 2.85
2273 2438 3.077484 ACATCAATCCCCACACTTCTG 57.923 47.619 0.00 0.00 0.00 3.02
2274 2439 2.291153 ACATCAATCCCCACACTTCTGG 60.291 50.000 0.00 0.00 0.00 3.86
2275 2440 1.444933 TCAATCCCCACACTTCTGGT 58.555 50.000 0.00 0.00 0.00 4.00
2276 2441 1.780309 TCAATCCCCACACTTCTGGTT 59.220 47.619 0.00 0.00 0.00 3.67
2277 2442 2.162681 CAATCCCCACACTTCTGGTTC 58.837 52.381 0.00 0.00 0.00 3.62
2278 2443 1.747444 ATCCCCACACTTCTGGTTCT 58.253 50.000 0.00 0.00 0.00 3.01
2279 2444 0.764890 TCCCCACACTTCTGGTTCTG 59.235 55.000 0.00 0.00 0.00 3.02
2280 2445 0.474184 CCCCACACTTCTGGTTCTGT 59.526 55.000 0.00 0.00 0.00 3.41
2281 2446 1.133792 CCCCACACTTCTGGTTCTGTT 60.134 52.381 0.00 0.00 0.00 3.16
2282 2447 2.222027 CCCACACTTCTGGTTCTGTTC 58.778 52.381 0.00 0.00 0.00 3.18
2283 2448 2.158755 CCCACACTTCTGGTTCTGTTCT 60.159 50.000 0.00 0.00 0.00 3.01
2284 2449 3.545703 CCACACTTCTGGTTCTGTTCTT 58.454 45.455 0.00 0.00 0.00 2.52
2285 2450 3.947834 CCACACTTCTGGTTCTGTTCTTT 59.052 43.478 0.00 0.00 0.00 2.52
2286 2451 4.201950 CCACACTTCTGGTTCTGTTCTTTG 60.202 45.833 0.00 0.00 0.00 2.77
2287 2452 4.396166 CACACTTCTGGTTCTGTTCTTTGT 59.604 41.667 0.00 0.00 0.00 2.83
2288 2453 5.584649 CACACTTCTGGTTCTGTTCTTTGTA 59.415 40.000 0.00 0.00 0.00 2.41
2289 2454 6.093495 CACACTTCTGGTTCTGTTCTTTGTAA 59.907 38.462 0.00 0.00 0.00 2.41
2290 2455 6.093633 ACACTTCTGGTTCTGTTCTTTGTAAC 59.906 38.462 0.00 0.00 0.00 2.50
2291 2456 6.093495 CACTTCTGGTTCTGTTCTTTGTAACA 59.907 38.462 0.00 0.00 37.75 2.41
2292 2457 6.828785 ACTTCTGGTTCTGTTCTTTGTAACAT 59.171 34.615 0.00 0.00 38.61 2.71
2293 2458 7.339466 ACTTCTGGTTCTGTTCTTTGTAACATT 59.661 33.333 0.00 0.00 38.61 2.71
2294 2459 7.026631 TCTGGTTCTGTTCTTTGTAACATTG 57.973 36.000 0.00 0.00 38.61 2.82
2295 2460 6.826231 TCTGGTTCTGTTCTTTGTAACATTGA 59.174 34.615 0.00 0.00 38.61 2.57
2296 2461 6.791303 TGGTTCTGTTCTTTGTAACATTGAC 58.209 36.000 0.00 0.00 38.61 3.18
2297 2462 6.601613 TGGTTCTGTTCTTTGTAACATTGACT 59.398 34.615 0.00 0.00 38.61 3.41
2298 2463 6.912591 GGTTCTGTTCTTTGTAACATTGACTG 59.087 38.462 0.00 0.00 38.61 3.51
2299 2464 7.201696 GGTTCTGTTCTTTGTAACATTGACTGA 60.202 37.037 0.00 0.00 38.61 3.41
2300 2465 8.345565 GTTCTGTTCTTTGTAACATTGACTGAT 58.654 33.333 0.00 0.00 38.61 2.90
2301 2466 8.450578 TCTGTTCTTTGTAACATTGACTGATT 57.549 30.769 0.00 0.00 38.61 2.57
2302 2467 9.554395 TCTGTTCTTTGTAACATTGACTGATTA 57.446 29.630 0.00 0.00 38.61 1.75
2303 2468 9.599322 CTGTTCTTTGTAACATTGACTGATTAC 57.401 33.333 0.00 0.00 38.61 1.89
2304 2469 9.114952 TGTTCTTTGTAACATTGACTGATTACA 57.885 29.630 0.00 0.00 36.11 2.41
2307 2472 9.283768 TCTTTGTAACATTGACTGATTACATGT 57.716 29.630 2.69 2.69 37.37 3.21
2308 2473 9.333497 CTTTGTAACATTGACTGATTACATGTG 57.667 33.333 9.11 0.00 37.37 3.21
2309 2474 7.376435 TGTAACATTGACTGATTACATGTGG 57.624 36.000 9.11 0.00 33.67 4.17
2310 2475 4.970662 ACATTGACTGATTACATGTGGC 57.029 40.909 9.11 0.00 0.00 5.01
2311 2476 4.334552 ACATTGACTGATTACATGTGGCA 58.665 39.130 9.11 0.00 0.00 4.92
2312 2477 4.156556 ACATTGACTGATTACATGTGGCAC 59.843 41.667 11.55 11.55 0.00 5.01
2313 2478 3.415457 TGACTGATTACATGTGGCACA 57.585 42.857 24.36 24.36 0.00 4.57
2335 2500 4.108699 CACTGTTGGTGCTTTTCAAAGA 57.891 40.909 3.35 0.00 39.22 2.52
2336 2501 4.493547 CACTGTTGGTGCTTTTCAAAGAA 58.506 39.130 3.35 0.00 39.22 2.52
2337 2502 4.563976 CACTGTTGGTGCTTTTCAAAGAAG 59.436 41.667 3.35 0.00 39.22 2.85
2339 2504 2.866156 GTTGGTGCTTTTCAAAGAAGCC 59.134 45.455 6.95 4.34 46.85 4.35
2340 2505 2.106566 TGGTGCTTTTCAAAGAAGCCA 58.893 42.857 6.95 6.46 46.85 4.75
2341 2506 2.101249 TGGTGCTTTTCAAAGAAGCCAG 59.899 45.455 6.95 0.00 46.85 4.85
2342 2507 2.130395 GTGCTTTTCAAAGAAGCCAGC 58.870 47.619 3.35 0.00 46.85 4.85
2343 2508 1.755959 TGCTTTTCAAAGAAGCCAGCA 59.244 42.857 3.35 0.10 46.85 4.41
2344 2509 2.366266 TGCTTTTCAAAGAAGCCAGCAT 59.634 40.909 3.35 0.00 46.85 3.79
2345 2510 2.735134 GCTTTTCAAAGAAGCCAGCATG 59.265 45.455 3.35 0.00 42.79 4.06
2346 2511 3.801293 GCTTTTCAAAGAAGCCAGCATGT 60.801 43.478 3.35 0.00 42.79 3.21
2347 2512 3.374220 TTTCAAAGAAGCCAGCATGTG 57.626 42.857 0.00 0.00 0.00 3.21
2348 2513 2.275134 TCAAAGAAGCCAGCATGTGA 57.725 45.000 0.00 0.00 0.00 3.58
2349 2514 2.585330 TCAAAGAAGCCAGCATGTGAA 58.415 42.857 0.00 0.00 0.00 3.18
2350 2515 2.957680 TCAAAGAAGCCAGCATGTGAAA 59.042 40.909 0.00 0.00 0.00 2.69
2351 2516 3.384146 TCAAAGAAGCCAGCATGTGAAAA 59.616 39.130 0.00 0.00 0.00 2.29
2352 2517 3.655276 AAGAAGCCAGCATGTGAAAAG 57.345 42.857 0.00 0.00 0.00 2.27
2353 2518 2.590821 AGAAGCCAGCATGTGAAAAGT 58.409 42.857 0.00 0.00 0.00 2.66
2354 2519 3.754965 AGAAGCCAGCATGTGAAAAGTA 58.245 40.909 0.00 0.00 0.00 2.24
2355 2520 3.755378 AGAAGCCAGCATGTGAAAAGTAG 59.245 43.478 0.00 0.00 0.00 2.57
2356 2521 1.815003 AGCCAGCATGTGAAAAGTAGC 59.185 47.619 0.00 0.00 0.00 3.58
2357 2522 1.541147 GCCAGCATGTGAAAAGTAGCA 59.459 47.619 0.00 0.00 0.00 3.49
2358 2523 2.415090 GCCAGCATGTGAAAAGTAGCAG 60.415 50.000 0.00 0.00 0.00 4.24
2359 2524 3.076621 CCAGCATGTGAAAAGTAGCAGA 58.923 45.455 0.00 0.00 0.00 4.26
2360 2525 3.503363 CCAGCATGTGAAAAGTAGCAGAA 59.497 43.478 0.00 0.00 0.00 3.02
2361 2526 4.470462 CAGCATGTGAAAAGTAGCAGAAC 58.530 43.478 0.00 0.00 0.00 3.01
2362 2527 3.503748 AGCATGTGAAAAGTAGCAGAACC 59.496 43.478 0.00 0.00 0.00 3.62
2363 2528 3.253188 GCATGTGAAAAGTAGCAGAACCA 59.747 43.478 0.00 0.00 0.00 3.67
2364 2529 4.787598 CATGTGAAAAGTAGCAGAACCAC 58.212 43.478 0.00 0.00 0.00 4.16
2365 2530 4.150897 TGTGAAAAGTAGCAGAACCACT 57.849 40.909 0.00 0.00 0.00 4.00
2366 2531 5.284861 TGTGAAAAGTAGCAGAACCACTA 57.715 39.130 0.00 0.00 0.00 2.74
2367 2532 5.054477 TGTGAAAAGTAGCAGAACCACTAC 58.946 41.667 0.00 0.00 39.25 2.73
2368 2533 5.054477 GTGAAAAGTAGCAGAACCACTACA 58.946 41.667 0.00 0.00 41.01 2.74
2369 2534 5.177696 GTGAAAAGTAGCAGAACCACTACAG 59.822 44.000 0.00 0.00 41.01 2.74
2370 2535 4.957684 AAAGTAGCAGAACCACTACAGT 57.042 40.909 0.00 0.00 41.01 3.55
2371 2536 6.041182 TGAAAAGTAGCAGAACCACTACAGTA 59.959 38.462 0.00 0.00 41.01 2.74
2372 2537 5.646577 AAGTAGCAGAACCACTACAGTAG 57.353 43.478 6.00 6.00 41.01 2.57
2373 2538 4.919793 AGTAGCAGAACCACTACAGTAGA 58.080 43.478 14.94 0.00 41.01 2.59
2374 2539 5.322754 AGTAGCAGAACCACTACAGTAGAA 58.677 41.667 14.94 0.00 41.01 2.10
2375 2540 5.773680 AGTAGCAGAACCACTACAGTAGAAA 59.226 40.000 14.94 0.00 41.01 2.52
2376 2541 5.546621 AGCAGAACCACTACAGTAGAAAA 57.453 39.130 14.94 0.00 0.00 2.29
2377 2542 5.542779 AGCAGAACCACTACAGTAGAAAAG 58.457 41.667 14.94 2.53 0.00 2.27
2378 2543 4.691216 GCAGAACCACTACAGTAGAAAAGG 59.309 45.833 14.94 11.84 0.00 3.11
2379 2544 4.691216 CAGAACCACTACAGTAGAAAAGGC 59.309 45.833 14.94 0.00 0.00 4.35
2380 2545 3.697619 ACCACTACAGTAGAAAAGGCC 57.302 47.619 14.94 0.00 0.00 5.19
2381 2546 2.976882 ACCACTACAGTAGAAAAGGCCA 59.023 45.455 14.94 0.00 0.00 5.36
2382 2547 3.587506 ACCACTACAGTAGAAAAGGCCAT 59.412 43.478 14.94 0.00 0.00 4.40
2383 2548 4.192317 CCACTACAGTAGAAAAGGCCATC 58.808 47.826 14.94 0.00 0.00 3.51
2384 2549 4.080863 CCACTACAGTAGAAAAGGCCATCT 60.081 45.833 14.94 8.32 0.00 2.90
2385 2550 5.128827 CCACTACAGTAGAAAAGGCCATCTA 59.871 44.000 14.94 7.20 0.00 1.98
2386 2551 6.276847 CACTACAGTAGAAAAGGCCATCTAG 58.723 44.000 14.94 2.18 0.00 2.43
2387 2552 5.958987 ACTACAGTAGAAAAGGCCATCTAGT 59.041 40.000 14.94 9.99 33.17 2.57
2388 2553 5.763876 ACAGTAGAAAAGGCCATCTAGTT 57.236 39.130 5.01 0.00 31.08 2.24
2389 2554 6.869206 ACAGTAGAAAAGGCCATCTAGTTA 57.131 37.500 5.01 0.00 31.08 2.24
2390 2555 6.641474 ACAGTAGAAAAGGCCATCTAGTTAC 58.359 40.000 5.01 0.78 31.08 2.50
2391 2556 6.440965 ACAGTAGAAAAGGCCATCTAGTTACT 59.559 38.462 5.01 3.19 31.08 2.24
2392 2557 6.758886 CAGTAGAAAAGGCCATCTAGTTACTG 59.241 42.308 5.01 11.62 31.08 2.74
2393 2558 6.668283 AGTAGAAAAGGCCATCTAGTTACTGA 59.332 38.462 5.01 0.00 29.54 3.41
2394 2559 6.374417 AGAAAAGGCCATCTAGTTACTGAA 57.626 37.500 5.01 0.00 0.00 3.02
2395 2560 6.174049 AGAAAAGGCCATCTAGTTACTGAAC 58.826 40.000 5.01 0.00 35.64 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 7.601508 TCATGATCATCATCATTAACTTCCTCG 59.398 37.037 4.86 0.00 46.07 4.63
195 196 7.544622 TCGTCATAGTCTAGCAACATAACTTT 58.455 34.615 0.00 0.00 0.00 2.66
213 214 8.459911 TCTTCATAGTTCATAGGTTCGTCATA 57.540 34.615 0.00 0.00 0.00 2.15
226 227 4.081697 TCACCATCGCTTCTTCATAGTTCA 60.082 41.667 0.00 0.00 0.00 3.18
276 277 4.202545 GGATCCCATCTCAGATTTCATGGT 60.203 45.833 0.00 0.00 34.97 3.55
377 378 2.816087 ACCGTCAGCGTTAGACTTCTTA 59.184 45.455 0.00 0.00 36.15 2.10
384 385 3.581024 AACATTACCGTCAGCGTTAGA 57.419 42.857 0.00 0.00 36.15 2.10
387 388 2.991190 CAGTAACATTACCGTCAGCGTT 59.009 45.455 0.00 0.00 34.19 4.84
436 437 5.188751 TCAACCCCTTGAACTTGTTGAAAAT 59.811 36.000 0.00 0.00 41.48 1.82
442 444 3.382083 AGTCAACCCCTTGAACTTGTT 57.618 42.857 0.00 0.00 38.17 2.83
480 482 3.181479 ACAGATTTAAGCATCGCTACGGA 60.181 43.478 0.00 0.00 38.25 4.69
497 499 4.406648 TGCTAACATGATTCGGACAGAT 57.593 40.909 0.00 0.00 0.00 2.90
574 576 8.498054 TTTTCATTGACAAAATGGTTTTAGCA 57.502 26.923 0.00 0.00 0.00 3.49
581 583 9.829507 TGAAACTATTTTCATTGACAAAATGGT 57.170 25.926 4.26 6.88 45.08 3.55
634 636 4.471904 TTAACACATGGGCTCTCTACTG 57.528 45.455 0.00 0.00 0.00 2.74
671 675 7.806487 TCGGATTTCGTAGTGTGATACATATTC 59.194 37.037 0.00 0.00 40.32 1.75
685 691 5.600908 TTTTCCAAACTCGGATTTCGTAG 57.399 39.130 0.00 0.00 40.32 3.51
891 936 7.035004 GGTTGTTGCACATGATACAATTGTAT 58.965 34.615 27.23 27.23 43.38 2.29
939 984 7.930865 TGAAATGTTTGGTTCCCTTCAAATAAG 59.069 33.333 0.00 0.00 35.66 1.73
942 987 6.099557 TCTGAAATGTTTGGTTCCCTTCAAAT 59.900 34.615 0.00 0.00 35.66 2.32
1067 1112 9.844257 ATTTAAATGTTTGGTTTCTTTGATGGA 57.156 25.926 0.00 0.00 0.00 3.41
1115 1162 6.985188 TCTATAAAGTTCACATGCAACTCC 57.015 37.500 10.33 0.00 32.71 3.85
1170 1220 1.407258 AGAAGCGAGAGTAGGATGTGC 59.593 52.381 0.00 0.00 0.00 4.57
1172 1222 2.028130 CCAGAAGCGAGAGTAGGATGT 58.972 52.381 0.00 0.00 0.00 3.06
1194 1244 2.731572 CTGAAGGCATTGGTCAGGATT 58.268 47.619 0.00 0.00 36.04 3.01
1254 1325 5.153950 AGTCCTGTTTGAGTTCCTGTATC 57.846 43.478 0.00 0.00 0.00 2.24
1258 1329 2.551071 GGGAGTCCTGTTTGAGTTCCTG 60.551 54.545 9.58 0.00 31.44 3.86
1259 1330 1.700186 GGGAGTCCTGTTTGAGTTCCT 59.300 52.381 9.58 0.00 31.44 3.36
1260 1331 1.700186 AGGGAGTCCTGTTTGAGTTCC 59.300 52.381 9.58 0.00 42.98 3.62
1261 1332 2.289756 GGAGGGAGTCCTGTTTGAGTTC 60.290 54.545 9.58 0.00 45.05 3.01
1262 1333 1.700186 GGAGGGAGTCCTGTTTGAGTT 59.300 52.381 9.58 0.00 45.05 3.01
1263 1334 1.353091 GGAGGGAGTCCTGTTTGAGT 58.647 55.000 9.58 0.00 45.05 3.41
1264 1335 0.615850 GGGAGGGAGTCCTGTTTGAG 59.384 60.000 9.58 0.00 46.06 3.02
1265 1336 0.840722 GGGGAGGGAGTCCTGTTTGA 60.841 60.000 9.58 0.00 46.06 2.69
1266 1337 0.842467 AGGGGAGGGAGTCCTGTTTG 60.842 60.000 9.58 0.00 46.06 2.93
1267 1338 0.103876 AAGGGGAGGGAGTCCTGTTT 60.104 55.000 9.58 0.00 46.06 2.83
1268 1339 0.547954 GAAGGGGAGGGAGTCCTGTT 60.548 60.000 9.58 0.00 46.06 3.16
1269 1340 1.081277 GAAGGGGAGGGAGTCCTGT 59.919 63.158 9.58 0.00 46.06 4.00
1270 1341 0.547712 TTGAAGGGGAGGGAGTCCTG 60.548 60.000 9.58 0.00 46.06 3.86
1271 1342 0.547954 GTTGAAGGGGAGGGAGTCCT 60.548 60.000 9.58 0.00 46.06 3.85
1272 1343 1.900545 CGTTGAAGGGGAGGGAGTCC 61.901 65.000 0.00 0.00 46.10 3.85
1273 1344 1.192803 ACGTTGAAGGGGAGGGAGTC 61.193 60.000 0.00 0.00 0.00 3.36
1274 1345 1.152096 ACGTTGAAGGGGAGGGAGT 60.152 57.895 0.00 0.00 0.00 3.85
1275 1346 1.296715 CACGTTGAAGGGGAGGGAG 59.703 63.158 0.00 0.00 0.00 4.30
1276 1347 2.221299 CCACGTTGAAGGGGAGGGA 61.221 63.158 0.00 0.00 36.61 4.20
1277 1348 1.774894 TTCCACGTTGAAGGGGAGGG 61.775 60.000 0.00 0.00 45.71 4.30
1278 1349 0.109723 TTTCCACGTTGAAGGGGAGG 59.890 55.000 2.05 0.00 45.71 4.30
1279 1350 2.084546 GATTTCCACGTTGAAGGGGAG 58.915 52.381 2.05 0.00 45.71 4.30
1280 1351 1.422024 TGATTTCCACGTTGAAGGGGA 59.578 47.619 2.05 0.00 43.02 4.81
1281 1352 1.904287 TGATTTCCACGTTGAAGGGG 58.096 50.000 2.05 0.00 35.56 4.79
1282 1353 3.758554 AGATTGATTTCCACGTTGAAGGG 59.241 43.478 2.05 0.00 0.00 3.95
1283 1354 4.455533 TGAGATTGATTTCCACGTTGAAGG 59.544 41.667 2.05 0.00 0.00 3.46
1284 1355 5.611796 TGAGATTGATTTCCACGTTGAAG 57.388 39.130 2.05 0.00 0.00 3.02
1285 1356 5.562696 GCTTGAGATTGATTTCCACGTTGAA 60.563 40.000 0.00 0.00 0.00 2.69
1286 1357 4.083324 GCTTGAGATTGATTTCCACGTTGA 60.083 41.667 0.00 0.00 0.00 3.18
1287 1358 4.161333 GCTTGAGATTGATTTCCACGTTG 58.839 43.478 0.00 0.00 0.00 4.10
1288 1359 3.820467 TGCTTGAGATTGATTTCCACGTT 59.180 39.130 0.00 0.00 0.00 3.99
1289 1360 3.411446 TGCTTGAGATTGATTTCCACGT 58.589 40.909 0.00 0.00 0.00 4.49
1290 1361 3.181503 CCTGCTTGAGATTGATTTCCACG 60.182 47.826 0.00 0.00 0.00 4.94
1291 1362 4.012374 TCCTGCTTGAGATTGATTTCCAC 58.988 43.478 0.00 0.00 0.00 4.02
1292 1363 4.305539 TCCTGCTTGAGATTGATTTCCA 57.694 40.909 0.00 0.00 0.00 3.53
1293 1364 4.704057 AGTTCCTGCTTGAGATTGATTTCC 59.296 41.667 0.00 0.00 0.00 3.13
1294 1365 5.413833 TGAGTTCCTGCTTGAGATTGATTTC 59.586 40.000 0.00 0.00 0.00 2.17
1295 1366 5.319453 TGAGTTCCTGCTTGAGATTGATTT 58.681 37.500 0.00 0.00 0.00 2.17
1296 1367 4.914983 TGAGTTCCTGCTTGAGATTGATT 58.085 39.130 0.00 0.00 0.00 2.57
1297 1368 4.564782 TGAGTTCCTGCTTGAGATTGAT 57.435 40.909 0.00 0.00 0.00 2.57
1298 1369 4.356405 TTGAGTTCCTGCTTGAGATTGA 57.644 40.909 0.00 0.00 0.00 2.57
1299 1370 4.276678 TGTTTGAGTTCCTGCTTGAGATTG 59.723 41.667 0.00 0.00 0.00 2.67
1300 1371 4.464008 TGTTTGAGTTCCTGCTTGAGATT 58.536 39.130 0.00 0.00 0.00 2.40
1301 1372 4.090761 TGTTTGAGTTCCTGCTTGAGAT 57.909 40.909 0.00 0.00 0.00 2.75
1302 1373 3.558931 TGTTTGAGTTCCTGCTTGAGA 57.441 42.857 0.00 0.00 0.00 3.27
1303 1374 3.817084 TCATGTTTGAGTTCCTGCTTGAG 59.183 43.478 0.00 0.00 0.00 3.02
1304 1375 3.565482 GTCATGTTTGAGTTCCTGCTTGA 59.435 43.478 0.00 0.00 30.85 3.02
1305 1376 3.567164 AGTCATGTTTGAGTTCCTGCTTG 59.433 43.478 0.00 0.00 31.17 4.01
1306 1377 3.817647 GAGTCATGTTTGAGTTCCTGCTT 59.182 43.478 0.00 0.00 35.61 3.91
1307 1378 3.406764 GAGTCATGTTTGAGTTCCTGCT 58.593 45.455 0.00 0.00 35.61 4.24
1308 1379 2.485814 GGAGTCATGTTTGAGTTCCTGC 59.514 50.000 0.00 0.00 35.61 4.85
1325 1400 1.355720 CCATGTTGAAGGGAAGGGAGT 59.644 52.381 0.00 0.00 0.00 3.85
1380 1464 2.533916 ACTCTTCATGCCACTCTGAGA 58.466 47.619 12.44 0.00 0.00 3.27
1415 1499 3.762288 TCTTGTCATACTTACGAGCAGGT 59.238 43.478 0.00 0.00 0.00 4.00
1423 1507 4.430007 TGCATCGGTCTTGTCATACTTAC 58.570 43.478 0.00 0.00 0.00 2.34
1525 1618 6.572167 TTCATATGTTGAACTGCATTGTCA 57.428 33.333 1.90 0.00 39.44 3.58
1531 1624 6.206438 TGCTTAGTTTCATATGTTGAACTGCA 59.794 34.615 21.25 19.82 43.99 4.41
1573 1692 0.321653 CCAAGTAGCCAAGCCGACTT 60.322 55.000 0.00 0.04 36.22 3.01
1574 1693 1.296715 CCAAGTAGCCAAGCCGACT 59.703 57.895 0.00 0.00 0.00 4.18
1578 1697 1.387295 GGATGCCAAGTAGCCAAGCC 61.387 60.000 0.00 0.00 0.00 4.35
1658 1783 1.681793 GATGCATGAGGAGCAGCAATT 59.318 47.619 2.46 0.00 46.81 2.32
1659 1784 1.319541 GATGCATGAGGAGCAGCAAT 58.680 50.000 2.46 0.00 46.81 3.56
1809 1970 2.521958 TAGTTGCCGCCTCAAGCCTC 62.522 60.000 0.00 0.00 38.78 4.70
1890 2054 7.029563 ACAAATCTCAGTGTTTGTTTTCAGTC 58.970 34.615 4.88 0.00 43.80 3.51
1974 2139 6.205464 CCAGTTGTTGCATATAGGAGTATTGG 59.795 42.308 0.00 0.00 0.00 3.16
2111 2276 9.233649 TGGTCAACGGAACTTATATGTTTTATT 57.766 29.630 5.56 0.00 0.00 1.40
2112 2277 8.671028 GTGGTCAACGGAACTTATATGTTTTAT 58.329 33.333 5.56 0.00 0.00 1.40
2113 2278 7.879160 AGTGGTCAACGGAACTTATATGTTTTA 59.121 33.333 5.56 0.00 0.00 1.52
2114 2279 6.713450 AGTGGTCAACGGAACTTATATGTTTT 59.287 34.615 5.56 0.00 0.00 2.43
2115 2280 6.235664 AGTGGTCAACGGAACTTATATGTTT 58.764 36.000 5.56 0.00 0.00 2.83
2116 2281 5.801380 AGTGGTCAACGGAACTTATATGTT 58.199 37.500 3.79 3.79 0.00 2.71
2117 2282 5.416271 AGTGGTCAACGGAACTTATATGT 57.584 39.130 0.00 0.00 0.00 2.29
2118 2283 9.706691 ATATAAGTGGTCAACGGAACTTATATG 57.293 33.333 18.93 0.00 46.75 1.78
2122 2287 9.941325 TTTAATATAAGTGGTCAACGGAACTTA 57.059 29.630 0.00 0.00 38.93 2.24
2123 2288 8.851541 TTTAATATAAGTGGTCAACGGAACTT 57.148 30.769 0.00 0.00 36.80 2.66
2124 2289 8.851541 TTTTAATATAAGTGGTCAACGGAACT 57.148 30.769 0.00 0.00 0.00 3.01
2125 2290 8.179615 CCTTTTAATATAAGTGGTCAACGGAAC 58.820 37.037 0.00 0.00 0.00 3.62
2126 2291 8.102047 TCCTTTTAATATAAGTGGTCAACGGAA 58.898 33.333 0.00 0.00 0.00 4.30
2127 2292 7.622713 TCCTTTTAATATAAGTGGTCAACGGA 58.377 34.615 0.00 0.00 0.00 4.69
2128 2293 7.852971 TCCTTTTAATATAAGTGGTCAACGG 57.147 36.000 0.00 0.00 0.00 4.44
2129 2294 9.769093 CTTTCCTTTTAATATAAGTGGTCAACG 57.231 33.333 0.00 0.00 0.00 4.10
2160 2325 9.574516 AGGTCATTTTCAAAGTAACAGAAGTAT 57.425 29.630 0.00 0.00 0.00 2.12
2161 2326 8.974060 AGGTCATTTTCAAAGTAACAGAAGTA 57.026 30.769 0.00 0.00 0.00 2.24
2162 2327 7.556275 TGAGGTCATTTTCAAAGTAACAGAAGT 59.444 33.333 0.00 0.00 0.00 3.01
2163 2328 7.930217 TGAGGTCATTTTCAAAGTAACAGAAG 58.070 34.615 0.00 0.00 0.00 2.85
2164 2329 7.013274 CCTGAGGTCATTTTCAAAGTAACAGAA 59.987 37.037 0.00 0.00 0.00 3.02
2165 2330 6.486657 CCTGAGGTCATTTTCAAAGTAACAGA 59.513 38.462 0.00 0.00 0.00 3.41
2166 2331 6.672147 CCTGAGGTCATTTTCAAAGTAACAG 58.328 40.000 0.00 0.00 0.00 3.16
2167 2332 5.009610 GCCTGAGGTCATTTTCAAAGTAACA 59.990 40.000 0.00 0.00 0.00 2.41
2168 2333 5.241728 AGCCTGAGGTCATTTTCAAAGTAAC 59.758 40.000 0.00 0.00 0.00 2.50
2169 2334 5.385198 AGCCTGAGGTCATTTTCAAAGTAA 58.615 37.500 0.00 0.00 0.00 2.24
2170 2335 4.985538 AGCCTGAGGTCATTTTCAAAGTA 58.014 39.130 0.00 0.00 0.00 2.24
2171 2336 3.823304 GAGCCTGAGGTCATTTTCAAAGT 59.177 43.478 0.00 0.00 40.37 2.66
2172 2337 3.822735 TGAGCCTGAGGTCATTTTCAAAG 59.177 43.478 0.00 0.00 45.34 2.77
2173 2338 3.831323 TGAGCCTGAGGTCATTTTCAAA 58.169 40.909 0.00 0.00 45.34 2.69
2174 2339 3.507162 TGAGCCTGAGGTCATTTTCAA 57.493 42.857 0.00 0.00 45.34 2.69
2181 2346 9.962289 AACAAATGTTAGTTGAGCCTGAGGTCA 62.962 40.741 0.00 0.00 41.58 4.02
2182 2347 3.618690 ATGTTAGTTGAGCCTGAGGTC 57.381 47.619 0.00 0.00 41.06 3.85
2183 2348 4.074970 CAAATGTTAGTTGAGCCTGAGGT 58.925 43.478 0.00 0.00 0.00 3.85
2184 2349 4.074970 ACAAATGTTAGTTGAGCCTGAGG 58.925 43.478 0.00 0.00 0.00 3.86
2185 2350 5.695851 AACAAATGTTAGTTGAGCCTGAG 57.304 39.130 0.00 0.00 36.32 3.35
2186 2351 7.759489 AATAACAAATGTTAGTTGAGCCTGA 57.241 32.000 11.28 0.00 42.94 3.86
2187 2352 8.730680 ACTAATAACAAATGTTAGTTGAGCCTG 58.269 33.333 17.41 3.45 41.54 4.85
2188 2353 8.863872 ACTAATAACAAATGTTAGTTGAGCCT 57.136 30.769 17.41 0.00 41.54 4.58
2203 2368 9.944376 AGTCTTGATGAGCTTAACTAATAACAA 57.056 29.630 0.00 0.00 0.00 2.83
2204 2369 9.371136 CAGTCTTGATGAGCTTAACTAATAACA 57.629 33.333 0.00 0.00 0.00 2.41
2205 2370 9.587772 TCAGTCTTGATGAGCTTAACTAATAAC 57.412 33.333 0.00 0.00 0.00 1.89
2208 2373 9.678260 AATTCAGTCTTGATGAGCTTAACTAAT 57.322 29.630 0.00 0.00 32.27 1.73
2209 2374 9.155975 GAATTCAGTCTTGATGAGCTTAACTAA 57.844 33.333 0.00 0.00 32.27 2.24
2210 2375 7.766278 GGAATTCAGTCTTGATGAGCTTAACTA 59.234 37.037 7.93 0.00 32.27 2.24
2211 2376 6.597280 GGAATTCAGTCTTGATGAGCTTAACT 59.403 38.462 7.93 0.00 32.27 2.24
2212 2377 6.183360 GGGAATTCAGTCTTGATGAGCTTAAC 60.183 42.308 7.93 0.00 32.27 2.01
2213 2378 5.882557 GGGAATTCAGTCTTGATGAGCTTAA 59.117 40.000 7.93 0.00 32.27 1.85
2214 2379 5.190528 AGGGAATTCAGTCTTGATGAGCTTA 59.809 40.000 7.93 0.00 32.27 3.09
2215 2380 4.018597 AGGGAATTCAGTCTTGATGAGCTT 60.019 41.667 7.93 0.00 32.27 3.74
2216 2381 3.522750 AGGGAATTCAGTCTTGATGAGCT 59.477 43.478 7.93 0.00 32.27 4.09
2217 2382 3.626670 CAGGGAATTCAGTCTTGATGAGC 59.373 47.826 7.93 0.00 32.27 4.26
2218 2383 4.874966 GTCAGGGAATTCAGTCTTGATGAG 59.125 45.833 7.93 0.00 32.27 2.90
2219 2384 4.533707 AGTCAGGGAATTCAGTCTTGATGA 59.466 41.667 7.93 0.00 32.27 2.92
2220 2385 4.634883 CAGTCAGGGAATTCAGTCTTGATG 59.365 45.833 7.93 0.75 32.27 3.07
2221 2386 4.533707 TCAGTCAGGGAATTCAGTCTTGAT 59.466 41.667 7.93 0.00 32.27 2.57
2222 2387 3.903714 TCAGTCAGGGAATTCAGTCTTGA 59.096 43.478 7.93 0.00 0.00 3.02
2223 2388 3.999663 GTCAGTCAGGGAATTCAGTCTTG 59.000 47.826 7.93 0.00 0.00 3.02
2224 2389 3.008485 GGTCAGTCAGGGAATTCAGTCTT 59.992 47.826 7.93 0.00 0.00 3.01
2225 2390 2.569404 GGTCAGTCAGGGAATTCAGTCT 59.431 50.000 7.93 0.00 0.00 3.24
2226 2391 2.303022 TGGTCAGTCAGGGAATTCAGTC 59.697 50.000 7.93 0.00 0.00 3.51
2227 2392 2.338809 TGGTCAGTCAGGGAATTCAGT 58.661 47.619 7.93 0.00 0.00 3.41
2228 2393 3.641434 ATGGTCAGTCAGGGAATTCAG 57.359 47.619 7.93 0.00 0.00 3.02
2229 2394 5.512942 TTAATGGTCAGTCAGGGAATTCA 57.487 39.130 7.93 0.00 0.00 2.57
2230 2395 7.054124 TGTATTAATGGTCAGTCAGGGAATTC 58.946 38.462 0.00 0.00 0.00 2.17
2231 2396 6.969043 TGTATTAATGGTCAGTCAGGGAATT 58.031 36.000 0.00 0.00 0.00 2.17
2232 2397 6.575244 TGTATTAATGGTCAGTCAGGGAAT 57.425 37.500 0.00 0.00 0.00 3.01
2233 2398 6.157820 TGATGTATTAATGGTCAGTCAGGGAA 59.842 38.462 0.00 0.00 0.00 3.97
2234 2399 5.665360 TGATGTATTAATGGTCAGTCAGGGA 59.335 40.000 0.00 0.00 0.00 4.20
2235 2400 5.928976 TGATGTATTAATGGTCAGTCAGGG 58.071 41.667 0.00 0.00 0.00 4.45
2236 2401 7.173907 GGATTGATGTATTAATGGTCAGTCAGG 59.826 40.741 16.38 0.00 30.12 3.86
2237 2402 7.173907 GGGATTGATGTATTAATGGTCAGTCAG 59.826 40.741 16.38 0.00 30.12 3.51
2238 2403 6.998074 GGGATTGATGTATTAATGGTCAGTCA 59.002 38.462 16.38 9.15 30.12 3.41
2239 2404 6.431234 GGGGATTGATGTATTAATGGTCAGTC 59.569 42.308 0.00 6.01 0.00 3.51
2240 2405 6.126215 TGGGGATTGATGTATTAATGGTCAGT 60.126 38.462 0.00 0.00 0.00 3.41
2241 2406 6.207417 GTGGGGATTGATGTATTAATGGTCAG 59.793 42.308 0.00 0.00 0.00 3.51
2242 2407 6.068010 GTGGGGATTGATGTATTAATGGTCA 58.932 40.000 0.00 0.00 0.00 4.02
2243 2408 6.016276 GTGTGGGGATTGATGTATTAATGGTC 60.016 42.308 0.00 0.00 0.00 4.02
2244 2409 5.833131 GTGTGGGGATTGATGTATTAATGGT 59.167 40.000 0.00 0.00 0.00 3.55
2245 2410 6.070656 AGTGTGGGGATTGATGTATTAATGG 58.929 40.000 0.00 0.00 0.00 3.16
2246 2411 7.503566 AGAAGTGTGGGGATTGATGTATTAATG 59.496 37.037 0.00 0.00 0.00 1.90
2247 2412 7.503566 CAGAAGTGTGGGGATTGATGTATTAAT 59.496 37.037 0.00 0.00 0.00 1.40
2248 2413 6.828273 CAGAAGTGTGGGGATTGATGTATTAA 59.172 38.462 0.00 0.00 0.00 1.40
2249 2414 6.356556 CAGAAGTGTGGGGATTGATGTATTA 58.643 40.000 0.00 0.00 0.00 0.98
2250 2415 5.195940 CAGAAGTGTGGGGATTGATGTATT 58.804 41.667 0.00 0.00 0.00 1.89
2251 2416 4.385643 CCAGAAGTGTGGGGATTGATGTAT 60.386 45.833 0.00 0.00 33.46 2.29
2252 2417 3.054434 CCAGAAGTGTGGGGATTGATGTA 60.054 47.826 0.00 0.00 33.46 2.29
2253 2418 2.291153 CCAGAAGTGTGGGGATTGATGT 60.291 50.000 0.00 0.00 33.46 3.06
2254 2419 2.291153 ACCAGAAGTGTGGGGATTGATG 60.291 50.000 0.00 0.00 42.54 3.07
2255 2420 1.995542 ACCAGAAGTGTGGGGATTGAT 59.004 47.619 0.00 0.00 42.54 2.57
2256 2421 1.444933 ACCAGAAGTGTGGGGATTGA 58.555 50.000 0.00 0.00 42.54 2.57
2257 2422 2.162681 GAACCAGAAGTGTGGGGATTG 58.837 52.381 0.00 0.00 42.54 2.67
2258 2423 2.065799 AGAACCAGAAGTGTGGGGATT 58.934 47.619 0.00 0.00 42.54 3.01
2259 2424 1.352352 CAGAACCAGAAGTGTGGGGAT 59.648 52.381 0.00 0.00 42.54 3.85
2260 2425 0.764890 CAGAACCAGAAGTGTGGGGA 59.235 55.000 0.00 0.00 42.54 4.81
2261 2426 0.474184 ACAGAACCAGAAGTGTGGGG 59.526 55.000 0.00 0.00 42.54 4.96
2262 2427 2.158755 AGAACAGAACCAGAAGTGTGGG 60.159 50.000 0.00 0.00 42.54 4.61
2263 2428 3.199880 AGAACAGAACCAGAAGTGTGG 57.800 47.619 0.00 0.00 44.01 4.17
2264 2429 4.396166 ACAAAGAACAGAACCAGAAGTGTG 59.604 41.667 0.00 0.00 0.00 3.82
2265 2430 4.589908 ACAAAGAACAGAACCAGAAGTGT 58.410 39.130 0.00 0.00 0.00 3.55
2266 2431 6.093495 TGTTACAAAGAACAGAACCAGAAGTG 59.907 38.462 0.00 0.00 34.40 3.16
2267 2432 6.177610 TGTTACAAAGAACAGAACCAGAAGT 58.822 36.000 0.00 0.00 34.40 3.01
2268 2433 6.677781 TGTTACAAAGAACAGAACCAGAAG 57.322 37.500 0.00 0.00 34.40 2.85
2269 2434 7.338196 TCAATGTTACAAAGAACAGAACCAGAA 59.662 33.333 0.00 0.00 42.38 3.02
2270 2435 6.826231 TCAATGTTACAAAGAACAGAACCAGA 59.174 34.615 0.00 0.00 42.38 3.86
2271 2436 6.912591 GTCAATGTTACAAAGAACAGAACCAG 59.087 38.462 0.00 0.00 42.38 4.00
2272 2437 6.601613 AGTCAATGTTACAAAGAACAGAACCA 59.398 34.615 0.00 0.00 42.38 3.67
2273 2438 6.912591 CAGTCAATGTTACAAAGAACAGAACC 59.087 38.462 0.00 0.00 42.38 3.62
2274 2439 7.693952 TCAGTCAATGTTACAAAGAACAGAAC 58.306 34.615 0.00 0.00 42.38 3.01
2275 2440 7.857734 TCAGTCAATGTTACAAAGAACAGAA 57.142 32.000 0.00 0.00 42.38 3.02
2276 2441 8.450578 AATCAGTCAATGTTACAAAGAACAGA 57.549 30.769 0.00 0.00 42.38 3.41
2277 2442 9.599322 GTAATCAGTCAATGTTACAAAGAACAG 57.401 33.333 0.00 0.00 42.38 3.16
2278 2443 9.114952 TGTAATCAGTCAATGTTACAAAGAACA 57.885 29.630 0.00 0.00 43.23 3.18
2281 2446 9.283768 ACATGTAATCAGTCAATGTTACAAAGA 57.716 29.630 0.00 0.00 38.12 2.52
2282 2447 9.333497 CACATGTAATCAGTCAATGTTACAAAG 57.667 33.333 0.00 4.38 38.12 2.77
2283 2448 8.296000 CCACATGTAATCAGTCAATGTTACAAA 58.704 33.333 0.00 0.00 38.12 2.83
2284 2449 7.574779 GCCACATGTAATCAGTCAATGTTACAA 60.575 37.037 0.00 0.00 38.12 2.41
2285 2450 6.128035 GCCACATGTAATCAGTCAATGTTACA 60.128 38.462 0.00 3.78 38.53 2.41
2286 2451 6.128035 TGCCACATGTAATCAGTCAATGTTAC 60.128 38.462 0.00 0.00 0.00 2.50
2287 2452 5.942826 TGCCACATGTAATCAGTCAATGTTA 59.057 36.000 0.00 0.00 0.00 2.41
2288 2453 4.766373 TGCCACATGTAATCAGTCAATGTT 59.234 37.500 0.00 0.00 0.00 2.71
2289 2454 4.156556 GTGCCACATGTAATCAGTCAATGT 59.843 41.667 0.00 0.00 0.00 2.71
2290 2455 4.156373 TGTGCCACATGTAATCAGTCAATG 59.844 41.667 0.00 0.00 0.00 2.82
2291 2456 4.156556 GTGTGCCACATGTAATCAGTCAAT 59.843 41.667 0.00 0.00 34.08 2.57
2292 2457 3.501828 GTGTGCCACATGTAATCAGTCAA 59.498 43.478 0.00 0.00 34.08 3.18
2293 2458 3.073678 GTGTGCCACATGTAATCAGTCA 58.926 45.455 0.00 0.00 34.08 3.41
2294 2459 3.073678 TGTGTGCCACATGTAATCAGTC 58.926 45.455 0.00 0.00 39.62 3.51
2295 2460 2.813754 GTGTGTGCCACATGTAATCAGT 59.186 45.455 0.00 0.00 46.32 3.41
2296 2461 3.076621 AGTGTGTGCCACATGTAATCAG 58.923 45.455 0.00 0.00 46.32 2.90
2297 2462 2.813172 CAGTGTGTGCCACATGTAATCA 59.187 45.455 0.00 0.00 46.32 2.57
2298 2463 2.813754 ACAGTGTGTGCCACATGTAATC 59.186 45.455 0.00 0.00 46.32 1.75
2299 2464 2.862541 ACAGTGTGTGCCACATGTAAT 58.137 42.857 0.00 0.00 46.32 1.89
2300 2465 2.340210 ACAGTGTGTGCCACATGTAA 57.660 45.000 0.00 0.00 46.32 2.41
2301 2466 1.946081 CAACAGTGTGTGCCACATGTA 59.054 47.619 0.00 0.00 46.32 2.29
2302 2467 0.740149 CAACAGTGTGTGCCACATGT 59.260 50.000 0.00 0.00 46.32 3.21
2303 2468 0.031043 CCAACAGTGTGTGCCACATG 59.969 55.000 0.00 0.00 46.32 3.21
2304 2469 0.395586 ACCAACAGTGTGTGCCACAT 60.396 50.000 0.00 0.00 46.32 3.21
2306 2471 1.433064 CACCAACAGTGTGTGCCAC 59.567 57.895 0.00 0.00 44.89 5.01
2307 2472 3.917058 CACCAACAGTGTGTGCCA 58.083 55.556 0.00 0.00 41.93 4.92
2315 2480 4.747810 CTTCTTTGAAAAGCACCAACAGT 58.252 39.130 0.00 0.00 35.99 3.55
2316 2481 3.553105 GCTTCTTTGAAAAGCACCAACAG 59.447 43.478 3.12 0.00 46.63 3.16
2317 2482 3.520569 GCTTCTTTGAAAAGCACCAACA 58.479 40.909 3.12 0.00 46.63 3.33
2324 2489 2.514205 TGCTGGCTTCTTTGAAAAGC 57.486 45.000 0.00 0.00 46.66 3.51
2325 2490 3.739300 CACATGCTGGCTTCTTTGAAAAG 59.261 43.478 0.00 0.00 37.36 2.27
2326 2491 3.384146 TCACATGCTGGCTTCTTTGAAAA 59.616 39.130 0.00 0.00 0.00 2.29
2327 2492 2.957680 TCACATGCTGGCTTCTTTGAAA 59.042 40.909 0.00 0.00 0.00 2.69
2328 2493 2.585330 TCACATGCTGGCTTCTTTGAA 58.415 42.857 0.00 0.00 0.00 2.69
2329 2494 2.275134 TCACATGCTGGCTTCTTTGA 57.725 45.000 0.00 0.00 0.00 2.69
2330 2495 3.374220 TTTCACATGCTGGCTTCTTTG 57.626 42.857 0.00 0.00 0.00 2.77
2331 2496 3.385755 ACTTTTCACATGCTGGCTTCTTT 59.614 39.130 0.00 0.00 0.00 2.52
2332 2497 2.961062 ACTTTTCACATGCTGGCTTCTT 59.039 40.909 0.00 0.00 0.00 2.52
2333 2498 2.590821 ACTTTTCACATGCTGGCTTCT 58.409 42.857 0.00 0.00 0.00 2.85
2334 2499 3.671702 GCTACTTTTCACATGCTGGCTTC 60.672 47.826 0.00 0.00 0.00 3.86
2335 2500 2.229784 GCTACTTTTCACATGCTGGCTT 59.770 45.455 0.00 0.00 0.00 4.35
2336 2501 1.815003 GCTACTTTTCACATGCTGGCT 59.185 47.619 0.00 0.00 0.00 4.75
2337 2502 1.541147 TGCTACTTTTCACATGCTGGC 59.459 47.619 0.00 0.00 0.00 4.85
2338 2503 3.076621 TCTGCTACTTTTCACATGCTGG 58.923 45.455 0.00 0.00 0.00 4.85
2339 2504 4.470462 GTTCTGCTACTTTTCACATGCTG 58.530 43.478 0.00 0.00 0.00 4.41
2340 2505 3.503748 GGTTCTGCTACTTTTCACATGCT 59.496 43.478 0.00 0.00 0.00 3.79
2341 2506 3.253188 TGGTTCTGCTACTTTTCACATGC 59.747 43.478 0.00 0.00 0.00 4.06
2342 2507 4.516698 AGTGGTTCTGCTACTTTTCACATG 59.483 41.667 0.00 0.00 35.20 3.21
2343 2508 4.718961 AGTGGTTCTGCTACTTTTCACAT 58.281 39.130 0.00 0.00 35.20 3.21
2344 2509 4.150897 AGTGGTTCTGCTACTTTTCACA 57.849 40.909 0.00 0.00 35.20 3.58
2345 2510 5.054477 TGTAGTGGTTCTGCTACTTTTCAC 58.946 41.667 0.00 0.00 39.69 3.18
2346 2511 5.163343 ACTGTAGTGGTTCTGCTACTTTTCA 60.163 40.000 0.00 0.00 39.69 2.69
2347 2512 5.298347 ACTGTAGTGGTTCTGCTACTTTTC 58.702 41.667 0.00 0.00 39.69 2.29
2348 2513 5.291905 ACTGTAGTGGTTCTGCTACTTTT 57.708 39.130 0.00 0.00 39.69 2.27
2349 2514 4.957684 ACTGTAGTGGTTCTGCTACTTT 57.042 40.909 0.00 0.00 39.69 2.66
2350 2515 5.322754 TCTACTGTAGTGGTTCTGCTACTT 58.677 41.667 14.11 0.00 39.69 2.24
2351 2516 4.919793 TCTACTGTAGTGGTTCTGCTACT 58.080 43.478 14.11 0.00 41.90 2.57
2352 2517 5.640189 TTCTACTGTAGTGGTTCTGCTAC 57.360 43.478 14.11 0.00 38.35 3.58
2353 2518 6.295123 CCTTTTCTACTGTAGTGGTTCTGCTA 60.295 42.308 14.11 0.00 0.00 3.49
2354 2519 5.511545 CCTTTTCTACTGTAGTGGTTCTGCT 60.512 44.000 14.11 0.00 0.00 4.24
2355 2520 4.691216 CCTTTTCTACTGTAGTGGTTCTGC 59.309 45.833 14.11 0.00 0.00 4.26
2356 2521 4.691216 GCCTTTTCTACTGTAGTGGTTCTG 59.309 45.833 14.11 1.26 0.00 3.02
2357 2522 4.262938 GGCCTTTTCTACTGTAGTGGTTCT 60.263 45.833 14.11 0.00 0.00 3.01
2358 2523 4.001652 GGCCTTTTCTACTGTAGTGGTTC 58.998 47.826 14.11 6.67 0.00 3.62
2359 2524 3.393278 TGGCCTTTTCTACTGTAGTGGTT 59.607 43.478 14.11 0.00 0.00 3.67
2360 2525 2.976882 TGGCCTTTTCTACTGTAGTGGT 59.023 45.455 14.11 0.00 0.00 4.16
2361 2526 3.695830 TGGCCTTTTCTACTGTAGTGG 57.304 47.619 14.11 12.52 0.00 4.00
2362 2527 5.091261 AGATGGCCTTTTCTACTGTAGTG 57.909 43.478 14.11 4.41 0.00 2.74
2363 2528 5.958987 ACTAGATGGCCTTTTCTACTGTAGT 59.041 40.000 14.11 1.30 0.00 2.73
2364 2529 6.472686 ACTAGATGGCCTTTTCTACTGTAG 57.527 41.667 3.32 8.55 0.00 2.74
2365 2530 6.869206 AACTAGATGGCCTTTTCTACTGTA 57.131 37.500 3.32 0.00 0.00 2.74
2366 2531 5.763876 AACTAGATGGCCTTTTCTACTGT 57.236 39.130 3.32 1.21 0.00 3.55
2367 2532 6.758886 CAGTAACTAGATGGCCTTTTCTACTG 59.241 42.308 3.32 10.04 0.00 2.74
2368 2533 6.668283 TCAGTAACTAGATGGCCTTTTCTACT 59.332 38.462 3.32 1.66 0.00 2.57
2369 2534 6.875076 TCAGTAACTAGATGGCCTTTTCTAC 58.125 40.000 3.32 0.00 0.00 2.59
2370 2535 7.328737 GTTCAGTAACTAGATGGCCTTTTCTA 58.671 38.462 3.32 7.35 32.54 2.10
2371 2536 6.174049 GTTCAGTAACTAGATGGCCTTTTCT 58.826 40.000 3.32 6.48 32.54 2.52
2372 2537 6.424176 GTTCAGTAACTAGATGGCCTTTTC 57.576 41.667 3.32 0.00 32.54 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.