AutoCloner

Multiple sequence alignment - TraesCS3A01G161500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G161500	chr3A	100.000	1886	0	0	1521	3406	163694087	163692202	0.000000e+00	3483.0
1	TraesCS3A01G161500	chr3A	100.000	617	0	0	587	1203	163695021	163694405	0.000000e+00	1140.0
2	TraesCS3A01G161500	chr3A	100.000	483	0	0	1	483	163695607	163695125	0.000000e+00	893.0
3	TraesCS3A01G161500	chr3A	92.453	53	4	0	683	735	163694856	163694804	3.640000e-10	76.8
4	TraesCS3A01G161500	chr3A	92.453	53	4	0	752	804	163694925	163694873	3.640000e-10	76.8
5	TraesCS3A01G161500	chr3B	99.042	939	9	0	1521	2459	207243010	207242072	0.000000e+00	1685.0
6	TraesCS3A01G161500	chr3B	92.831	809	50	7	2454	3255	651686299	651687106	0.000000e+00	1166.0
7	TraesCS3A01G161500	chr3B	97.267	622	12	3	587	1203	207243788	207243167	0.000000e+00	1050.0
8	TraesCS3A01G161500	chr3B	95.064	466	20	2	1	464	207244578	207244114	0.000000e+00	730.0
9	TraesCS3A01G161500	chr3B	92.453	53	3	1	683	735	207243617	207243566	1.310000e-09	75.0
10	TraesCS3A01G161500	chr2D	97.551	939	23	0	1521	2459	70292621	70293559	0.000000e+00	1607.0
11	TraesCS3A01G161500	chr2D	90.476	399	28	4	803	1201	70292074	70292462	5.040000e-143	518.0
12	TraesCS3A01G161500	chr2B	92.013	939	75	0	1521	2459	106205716	106204778	0.000000e+00	1319.0
13	TraesCS3A01G161500	chr2B	88.632	475	24	9	734	1201	106206326	106205875	4.970000e-153	551.0
14	TraesCS3A01G161500	chr2B	90.083	121	12	0	363	483	106213944	106213824	1.270000e-34	158.0
15	TraesCS3A01G161500	chr2B	91.228	57	5	0	587	643	106213730	106213674	1.010000e-10	78.7
16	TraesCS3A01G161500	chr4A	95.137	802	36	3	2454	3253	538856381	538855581	0.000000e+00	1262.0
17	TraesCS3A01G161500	chr5A	92.718	824	48	8	2445	3257	7580580	7581402	0.000000e+00	1179.0
18	TraesCS3A01G161500	chr5A	96.053	152	6	0	3253	3404	512462519	512462670	7.300000e-62	248.0
19	TraesCS3A01G161500	chr2A	92.611	812	44	10	2457	3255	754373606	754372798	0.000000e+00	1153.0
20	TraesCS3A01G161500	chr2A	92.593	810	43	12	2457	3255	16770285	16769482	0.000000e+00	1147.0
21	TraesCS3A01G161500	chr2A	91.872	812	50	11	2457	3255	754367200	754366392	0.000000e+00	1120.0
22	TraesCS3A01G161500	chr1A	92.279	816	47	11	2452	3257	51338224	51337415	0.000000e+00	1144.0
23	TraesCS3A01G161500	chr1A	95.455	154	7	0	3253	3406	359240479	359240632	2.630000e-61	246.0
24	TraesCS3A01G161500	chr5B	92.279	803	57	5	2457	3254	141159117	141159919	0.000000e+00	1134.0
25	TraesCS3A01G161500	chr6A	92.015	814	47	10	2454	3255	29912213	29913020	0.000000e+00	1127.0
26	TraesCS3A01G161500	chr3D	96.730	367	12	0	2093	2459	143640987	143640621	2.250000e-171	612.0
27	TraesCS3A01G161500	chr5D	93.983	349	21	0	1	349	459967577	459967925	2.330000e-146	529.0
28	TraesCS3A01G161500	chr7B	96.667	150	5	0	3257	3406	723757995	723757846	2.030000e-62	250.0
29	TraesCS3A01G161500	chr7B	95.484	155	7	0	3252	3406	108556776	108556622	7.300000e-62	248.0
30	TraesCS3A01G161500	chr7B	95.484	155	7	0	3252	3406	557438711	557438865	7.300000e-62	248.0
31	TraesCS3A01G161500	chr7B	95.484	155	7	0	3252	3406	653281563	653281717	7.300000e-62	248.0
32	TraesCS3A01G161500	chr7B	95.484	155	7	0	3252	3406	679627804	679627650	7.300000e-62	248.0
33	TraesCS3A01G161500	chr6B	95.484	155	7	0	3252	3406	64203744	64203590	7.300000e-62	248.0
34	TraesCS3A01G161500	chr1B	95.484	155	7	0	3252	3406	395229188	395229342	7.300000e-62	248.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G161500	chr3A	163692202	163695607	3405	True	1133.92	3483	96.9812	1	3406	5	chr3A.!!$R1	3405
1	TraesCS3A01G161500	chr3B	651686299	651687106	807	False	1166.00	1166	92.8310	2454	3255	1	chr3B.!!$F1	801
2	TraesCS3A01G161500	chr3B	207242072	207244578	2506	True	885.00	1685	95.9565	1	2459	4	chr3B.!!$R1	2458
3	TraesCS3A01G161500	chr2D	70292074	70293559	1485	False	1062.50	1607	94.0135	803	2459	2	chr2D.!!$F1	1656
4	TraesCS3A01G161500	chr2B	106204778	106206326	1548	True	935.00	1319	90.3225	734	2459	2	chr2B.!!$R1	1725
5	TraesCS3A01G161500	chr4A	538855581	538856381	800	True	1262.00	1262	95.1370	2454	3253	1	chr4A.!!$R1	799
6	TraesCS3A01G161500	chr5A	7580580	7581402	822	False	1179.00	1179	92.7180	2445	3257	1	chr5A.!!$F1	812
7	TraesCS3A01G161500	chr2A	754372798	754373606	808	True	1153.00	1153	92.6110	2457	3255	1	chr2A.!!$R3	798
8	TraesCS3A01G161500	chr2A	16769482	16770285	803	True	1147.00	1147	92.5930	2457	3255	1	chr2A.!!$R1	798
9	TraesCS3A01G161500	chr2A	754366392	754367200	808	True	1120.00	1120	91.8720	2457	3255	1	chr2A.!!$R2	798
10	TraesCS3A01G161500	chr1A	51337415	51338224	809	True	1144.00	1144	92.2790	2452	3257	1	chr1A.!!$R1	805
11	TraesCS3A01G161500	chr5B	141159117	141159919	802	False	1134.00	1134	92.2790	2457	3254	1	chr5B.!!$F1	797
12	TraesCS3A01G161500	chr6A	29912213	29913020	807	False	1127.00	1127	92.0150	2454	3255	1	chr6A.!!$F1	801

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
97	98	0.091678	GTTGCGCAATTGCATGTTCG	59.908	50.000	27.79	13.15	45.78	3.95	F
223	224	1.100510	CCCCATGTTGCAGTGATCTG	58.899	55.000	0.00	0.00	43.87	2.90	F
405	406	1.149174	ATGTGATCCGATGGTGGGC	59.851	57.895	0.00	0.00	0.00	5.36	F
410	411	1.690219	GATCCGATGGTGGGCAGAGT	61.690	60.000	0.00	0.00	0.00	3.24	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1711	1929	0.595053	CGTGACGTGACACAGAAGCT	60.595	55.000	5.87	40.34	3.74	R
2021	2239	1.215647	GAACTCGGACGCCATGAGT	59.784	57.895	0.00	44.46	3.41	R
2298	2516	4.094684	GCGCTGCGTCAGTCTAAT	57.905	55.556	24.04	33.43	1.73	R
2405	2623	7.440523	AAAATCTGAAGCGACTTAACAAGAT	57.559	32.000	0.00	0.00	2.40	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
97	98	0.091678	GTTGCGCAATTGCATGTTCG	59.908	50.000	27.79	13.15	45.78	3.95
118	119	5.997385	TCGAAAGTGCAATTTAGTCTTTCC	58.003	37.500	12.76	0.00	40.08	3.13
142	143	2.158900	AGGAATAATGAGACGGTGCAGG	60.159	50.000	0.00	0.00	0.00	4.85
143	144	2.420129	GGAATAATGAGACGGTGCAGGT	60.420	50.000	0.00	0.00	0.00	4.00
176	177	5.564848	CGGGAGATTCAAGTAGCGATTCATA	60.565	44.000	0.00	0.00	0.00	2.15
223	224	1.100510	CCCCATGTTGCAGTGATCTG	58.899	55.000	0.00	0.00	43.87	2.90
249	250	3.577848	CCCCAAAATCACATGTGAAAGGA	59.422	43.478	31.00	9.68	43.58	3.36
313	314	4.600692	AAATGGTAAAAGGCCAACAGAC	57.399	40.909	5.01	0.00	39.72	3.51
330	331	9.638239	GCCAACAGACAAAATCTATAAATGAAA	57.362	29.630	0.00	0.00	35.15	2.69
336	337	8.070171	AGACAAAATCTATAAATGAAATCGGCG	58.930	33.333	0.00	0.00	35.15	6.46
405	406	1.149174	ATGTGATCCGATGGTGGGC	59.851	57.895	0.00	0.00	0.00	5.36
410	411	1.690219	GATCCGATGGTGGGCAGAGT	61.690	60.000	0.00	0.00	0.00	3.24
439	440	6.461092	CGTTGGGACTTGCTAGATATCTAACA	60.461	42.308	13.41	12.20	0.00	2.41
456	457	4.782691	TCTAACACCCCTCTTGATTCATCA	59.217	41.667	0.00	0.00	34.44	3.07
458	459	2.915604	ACACCCCTCTTGATTCATCACT	59.084	45.455	0.00	0.00	36.36	3.41
459	460	3.276857	CACCCCTCTTGATTCATCACTG	58.723	50.000	0.00	0.00	36.36	3.66
463	464	5.163258	ACCCCTCTTGATTCATCACTGTATC	60.163	44.000	0.00	0.00	36.36	2.24
464	465	5.303971	CCCTCTTGATTCATCACTGTATCC	58.696	45.833	0.00	0.00	36.36	2.59
465	466	5.071519	CCCTCTTGATTCATCACTGTATCCT	59.928	44.000	0.00	0.00	36.36	3.24
466	467	6.268617	CCCTCTTGATTCATCACTGTATCCTA	59.731	42.308	0.00	0.00	36.36	2.94
467	468	7.377398	CCTCTTGATTCATCACTGTATCCTAG	58.623	42.308	0.00	0.00	36.36	3.02
468	469	6.753180	TCTTGATTCATCACTGTATCCTAGC	58.247	40.000	0.00	0.00	36.36	3.42
469	470	6.552725	TCTTGATTCATCACTGTATCCTAGCT	59.447	38.462	0.00	0.00	36.36	3.32
470	471	6.094193	TGATTCATCACTGTATCCTAGCTG	57.906	41.667	0.00	0.00	30.40	4.24
471	472	5.600069	TGATTCATCACTGTATCCTAGCTGT	59.400	40.000	0.00	0.00	30.40	4.40
472	473	5.939764	TTCATCACTGTATCCTAGCTGTT	57.060	39.130	0.00	0.00	0.00	3.16
473	474	5.521906	TCATCACTGTATCCTAGCTGTTC	57.478	43.478	0.00	0.00	0.00	3.18
474	475	5.204292	TCATCACTGTATCCTAGCTGTTCT	58.796	41.667	0.00	0.00	0.00	3.01
475	476	5.300539	TCATCACTGTATCCTAGCTGTTCTC	59.699	44.000	0.00	0.00	0.00	2.87
476	477	4.600062	TCACTGTATCCTAGCTGTTCTCA	58.400	43.478	0.00	0.00	0.00	3.27
477	478	4.399618	TCACTGTATCCTAGCTGTTCTCAC	59.600	45.833	0.00	0.00	0.00	3.51
478	479	4.158579	CACTGTATCCTAGCTGTTCTCACA	59.841	45.833	0.00	0.00	0.00	3.58
479	480	4.158764	ACTGTATCCTAGCTGTTCTCACAC	59.841	45.833	0.00	0.00	0.00	3.82
480	481	4.344978	TGTATCCTAGCTGTTCTCACACT	58.655	43.478	0.00	0.00	0.00	3.55
481	482	4.772624	TGTATCCTAGCTGTTCTCACACTT	59.227	41.667	0.00	0.00	0.00	3.16
482	483	3.944055	TCCTAGCTGTTCTCACACTTC	57.056	47.619	0.00	0.00	0.00	3.01
617	823	6.949715	AGGAAATTGCCATGACAAAACATAT	58.050	32.000	4.92	0.00	32.27	1.78
824	1036	7.138692	ACTTACTAGACATCTAACGTTCGTT	57.861	36.000	2.82	14.66	0.00	3.85
1711	1929	3.755628	GCCGTCCAGCGAGTACCA	61.756	66.667	0.00	0.00	44.77	3.25
2207	2425	2.679287	GACGAGGAGGGGGACGTT	60.679	66.667	0.00	0.00	39.04	3.99
2405	2623	2.219458	TCGTTGTATTGGCGGTTTTGA	58.781	42.857	0.00	0.00	0.00	2.69
2475	2693	3.512516	GGCATCTCCAGCCGTTGC	61.513	66.667	0.00	0.00	43.15	4.17
2505	2725	1.789116	CGTTTAAAAGCGCCGCCTA	59.211	52.632	4.98	0.00	0.00	3.93
2580	2802	2.042843	CCTAGGGCCGTCTCCAGT	60.043	66.667	0.00	0.00	0.00	4.00
2848	3084	1.400246	CGTCGTCGCTGTCGCATAAA	61.400	55.000	0.00	0.00	35.30	1.40
2849	3085	0.921347	GTCGTCGCTGTCGCATAAAT	59.079	50.000	0.00	0.00	35.30	1.40
3232	3483	2.028567	GGAGTGTGAAGAAGAGTGGGAG	60.029	54.545	0.00	0.00	0.00	4.30
3257	3508	1.153469	GAAGAAGAGGAGGCGCTGG	60.153	63.158	7.64	0.00	0.00	4.85
3258	3509	2.585791	GAAGAAGAGGAGGCGCTGGG	62.586	65.000	7.64	0.00	0.00	4.45
3259	3510	4.168291	GAAGAGGAGGCGCTGGGG	62.168	72.222	7.64	0.00	0.00	4.96
3293	3544	4.735132	TTCGTTGCCGCCCTCGAG	62.735	66.667	5.13	5.13	38.10	4.04
3296	3547	3.766691	GTTGCCGCCCTCGAGGTA	61.767	66.667	29.25	8.00	38.26	3.08
3297	3548	3.766691	TTGCCGCCCTCGAGGTAC	61.767	66.667	29.25	19.63	38.26	3.34
3299	3550	3.537874	GCCGCCCTCGAGGTACAT	61.538	66.667	29.25	0.00	38.26	2.29
3300	3551	2.417516	CCGCCCTCGAGGTACATG	59.582	66.667	29.25	14.98	38.26	3.21
3301	3552	2.125326	CCGCCCTCGAGGTACATGA	61.125	63.158	29.25	0.00	38.26	3.07
3302	3553	1.360551	CGCCCTCGAGGTACATGAG	59.639	63.158	29.25	13.52	38.26	2.90
3303	3554	1.068250	GCCCTCGAGGTACATGAGC	59.932	63.158	29.25	19.32	38.26	4.26
3304	3555	1.676678	GCCCTCGAGGTACATGAGCA	61.677	60.000	29.25	0.00	38.26	4.26
3305	3556	0.103208	CCCTCGAGGTACATGAGCAC	59.897	60.000	29.25	0.00	31.80	4.40
3306	3557	0.248661	CCTCGAGGTACATGAGCACG	60.249	60.000	24.04	3.89	40.44	5.34
3307	3558	0.867753	CTCGAGGTACATGAGCACGC	60.868	60.000	3.91	0.00	39.17	5.34
3308	3559	1.878522	CGAGGTACATGAGCACGCC	60.879	63.158	0.00	0.00	33.03	5.68
3309	3560	1.521681	GAGGTACATGAGCACGCCC	60.522	63.158	0.00	0.00	0.00	6.13
3310	3561	1.961180	GAGGTACATGAGCACGCCCT	61.961	60.000	0.00	0.00	0.00	5.19
3311	3562	1.521681	GGTACATGAGCACGCCCTC	60.522	63.158	0.00	0.00	0.00	4.30
3312	3563	1.878522	GTACATGAGCACGCCCTCG	60.879	63.158	0.00	0.00	42.43	4.63
3313	3564	2.049767	TACATGAGCACGCCCTCGA	61.050	57.895	0.00	0.00	39.41	4.04
3314	3565	2.004808	TACATGAGCACGCCCTCGAG	62.005	60.000	5.13	5.13	39.41	4.04
3315	3566	3.071206	ATGAGCACGCCCTCGAGT	61.071	61.111	12.31	0.00	39.41	4.18
3316	3567	3.362399	ATGAGCACGCCCTCGAGTG	62.362	63.158	12.31	0.00	42.20	3.51
3317	3568	4.057428	GAGCACGCCCTCGAGTGT	62.057	66.667	12.31	3.98	41.43	3.55
3343	3594	3.637273	GGACGCCCCACCAGAGTT	61.637	66.667	0.00	0.00	34.14	3.01
3344	3595	2.358737	GACGCCCCACCAGAGTTG	60.359	66.667	0.00	0.00	0.00	3.16
3353	3604	4.785453	CCAGAGTTGGCGCCCCTC	62.785	72.222	27.27	27.27	37.73	4.30
3368	3619	4.749310	CTCGCTGTTCTGCCGGCT	62.749	66.667	29.70	0.00	34.46	5.52

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
20	21	0.038159	CTCCCAAGTCGACAGTGGTC	60.038	60.000	27.18	0.00	40.77	4.02
21	22	0.759436	ACTCCCAAGTCGACAGTGGT	60.759	55.000	27.18	13.27	0.00	4.16
32	33	2.851798	GCAGAAGCAGACTCCCAAG	58.148	57.895	0.00	0.00	41.58	3.61
57	58	7.115236	CGCAACATATGATTATGGGTTTGAATG	59.885	37.037	10.38	0.00	39.69	2.67
97	98	6.970484	TCTGGAAAGACTAAATTGCACTTTC	58.030	36.000	5.18	9.77	42.86	2.62
118	119	3.126831	GCACCGTCTCATTATTCCTCTG	58.873	50.000	0.00	0.00	0.00	3.35
142	143	4.517832	ACTTGAATCTCCCGGTAAAACAAC	59.482	41.667	0.00	0.00	0.00	3.32
143	144	4.721132	ACTTGAATCTCCCGGTAAAACAA	58.279	39.130	0.00	0.00	0.00	2.83
176	177	9.917887	AGAAATGGATTGACAATAGATTCTCTT	57.082	29.630	0.00	0.00	0.00	2.85
223	224	2.562298	TCACATGTGATTTTGGGGAAGC	59.438	45.455	24.56	0.00	34.14	3.86
313	314	6.183359	CGCGCCGATTTCATTTATAGATTTTG	60.183	38.462	0.00	0.00	0.00	2.44
349	350	1.202582	GAAACTCACTAGAGGCGAGCA	59.797	52.381	0.00	0.00	46.44	4.26
350	351	1.202582	TGAAACTCACTAGAGGCGAGC	59.797	52.381	0.00	0.00	46.44	5.03
351	352	3.577649	TTGAAACTCACTAGAGGCGAG	57.422	47.619	0.00	0.00	46.44	5.03
405	406	1.867233	CAAGTCCCAACGAACACTCTG	59.133	52.381	0.00	0.00	0.00	3.35
410	411	1.689813	TCTAGCAAGTCCCAACGAACA	59.310	47.619	0.00	0.00	0.00	3.18
439	440	2.915604	ACAGTGATGAATCAAGAGGGGT	59.084	45.455	0.00	0.00	38.75	4.95
456	457	4.158764	GTGTGAGAACAGCTAGGATACAGT	59.841	45.833	0.00	0.00	41.41	3.55
458	459	4.344978	AGTGTGAGAACAGCTAGGATACA	58.655	43.478	0.00	0.00	41.41	2.29
459	460	4.993029	AGTGTGAGAACAGCTAGGATAC	57.007	45.455	0.00	0.00	0.00	2.24
656	862	9.672086	TCTCACGTGACAAATTTATTTTTAAGG	57.328	29.630	15.76	0.00	0.00	2.69
724	931	1.135689	GTAACATGGCAAGTTCCAGCG	60.136	52.381	11.83	0.00	39.89	5.18
850	1062	4.371975	AACGCAGGCATACACGTT	57.628	50.000	0.89	0.89	43.32	3.99
1711	1929	0.595053	CGTGACGTGACACAGAAGCT	60.595	55.000	5.87	0.00	40.34	3.74
1938	2156	3.179939	GAAAGTCTCGTCCGCCGC	61.180	66.667	0.00	0.00	36.19	6.53
2021	2239	1.215647	GAACTCGGACGCCATGAGT	59.784	57.895	0.00	0.00	44.46	3.41
2298	2516	4.094684	GCGCTGCGTCAGTCTAAT	57.905	55.556	24.04	0.00	33.43	1.73
2405	2623	7.440523	AAAATCTGAAGCGACTTAACAAGAT	57.559	32.000	0.00	0.00	0.00	2.40
2490	2710	1.450669	CCCTAGGCGGCGCTTTTAA	60.451	57.895	32.30	8.46	0.00	1.52
2505	2725	2.424842	TTTTGCATCGGCTCACCCCT	62.425	55.000	0.00	0.00	41.91	4.79
2848	3084	3.834799	GAAGGCGGGGTCGTCGAT	61.835	66.667	0.00	0.00	46.91	3.59
3232	3483	1.788229	CCTCCTCTTCTTCCTCCTCC	58.212	60.000	0.00	0.00	0.00	4.30
3279	3530	3.766691	TACCTCGAGGGCGGCAAC	61.767	66.667	34.04	2.63	40.27	4.17
3280	3531	3.766691	GTACCTCGAGGGCGGCAA	61.767	66.667	34.04	10.25	40.27	4.52
3282	3533	3.537874	ATGTACCTCGAGGGCGGC	61.538	66.667	34.04	20.25	40.27	6.53
3283	3534	2.076622	CTCATGTACCTCGAGGGCGG	62.077	65.000	34.04	20.60	40.27	6.13
3284	3535	1.360551	CTCATGTACCTCGAGGGCG	59.639	63.158	34.04	17.22	40.27	6.13
3285	3536	1.068250	GCTCATGTACCTCGAGGGC	59.932	63.158	34.04	25.29	40.27	5.19
3286	3537	0.103208	GTGCTCATGTACCTCGAGGG	59.897	60.000	34.04	16.75	40.27	4.30
3287	3538	0.248661	CGTGCTCATGTACCTCGAGG	60.249	60.000	30.11	30.11	42.17	4.63
3288	3539	0.867753	GCGTGCTCATGTACCTCGAG	60.868	60.000	5.13	5.13	0.00	4.04
3289	3540	1.138883	GCGTGCTCATGTACCTCGA	59.861	57.895	0.00	0.00	0.00	4.04
3290	3541	1.878522	GGCGTGCTCATGTACCTCG	60.879	63.158	0.00	0.00	0.00	4.63
3291	3542	1.521681	GGGCGTGCTCATGTACCTC	60.522	63.158	0.00	0.00	0.00	3.85
3292	3543	1.961180	GAGGGCGTGCTCATGTACCT	61.961	60.000	0.00	7.03	32.29	3.08
3293	3544	1.521681	GAGGGCGTGCTCATGTACC	60.522	63.158	0.00	0.00	0.00	3.34
3294	3545	1.878522	CGAGGGCGTGCTCATGTAC	60.879	63.158	0.00	0.00	0.00	2.90
3295	3546	2.004808	CTCGAGGGCGTGCTCATGTA	62.005	60.000	3.91	0.00	38.98	2.29
3296	3547	3.362399	CTCGAGGGCGTGCTCATGT	62.362	63.158	3.91	0.00	38.98	3.21
3297	3548	2.584418	CTCGAGGGCGTGCTCATG	60.584	66.667	3.91	0.00	38.98	3.07
3298	3549	3.071206	ACTCGAGGGCGTGCTCAT	61.071	61.111	18.41	0.00	38.98	2.90
3299	3550	4.056125	CACTCGAGGGCGTGCTCA	62.056	66.667	18.41	0.00	38.98	4.26
3300	3551	4.057428	ACACTCGAGGGCGTGCTC	62.057	66.667	16.39	0.00	38.98	4.26
3301	3552	4.363990	CACACTCGAGGGCGTGCT	62.364	66.667	16.39	0.00	38.98	4.40
3326	3577	3.637273	AACTCTGGTGGGGCGTCC	61.637	66.667	0.00	0.00	0.00	4.79
3327	3578	2.358737	CAACTCTGGTGGGGCGTC	60.359	66.667	0.00	0.00	0.00	5.19
3328	3579	3.953775	CCAACTCTGGTGGGGCGT	61.954	66.667	0.00	0.00	38.00	5.68
3336	3587	4.785453	GAGGGGCGCCAACTCTGG	62.785	72.222	31.53	0.00	46.65	3.86
3351	3602	4.749310	AGCCGGCAGAACAGCGAG	62.749	66.667	31.54	0.00	34.64	5.03
3385	3636	3.353836	CTTGGCGTCCACCAACGG	61.354	66.667	0.00	0.00	44.80	4.44
3386	3637	4.025401	GCTTGGCGTCCACCAACG	62.025	66.667	0.00	0.00	44.80	4.10

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.