Multiple sequence alignment - TraesCS3A01G161200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G161200 chr3A 100.000 5680 0 0 1 5680 162755053 162760732 0.000000e+00 10490.0
1 TraesCS3A01G161200 chr3A 92.045 88 2 2 3269 3355 162758238 162758321 1.000000e-22 119.0
2 TraesCS3A01G161200 chr3A 92.045 88 2 2 3186 3269 162758321 162758407 1.000000e-22 119.0
3 TraesCS3A01G161200 chr3A 90.141 71 6 1 5214 5283 162760168 162760238 2.180000e-14 91.6
4 TraesCS3A01G161200 chr3A 90.141 71 6 1 5116 5186 162760266 162760335 2.180000e-14 91.6
5 TraesCS3A01G161200 chr3D 96.396 2331 64 10 833 3156 143138781 143141098 0.000000e+00 3821.0
6 TraesCS3A01G161200 chr3D 94.705 1832 49 13 3183 4988 143141178 143142987 0.000000e+00 2802.0
7 TraesCS3A01G161200 chr3D 94.611 167 3 3 3194 3355 143141102 143141267 2.630000e-63 254.0
8 TraesCS3A01G161200 chr3D 96.250 80 2 1 3276 3355 143141102 143141180 4.620000e-26 130.0
9 TraesCS3A01G161200 chr3D 92.045 88 2 2 3186 3269 143141267 143141353 1.000000e-22 119.0
10 TraesCS3A01G161200 chr3D 94.118 51 3 0 2718 2768 143140614 143140664 1.700000e-10 78.7
11 TraesCS3A01G161200 chr3B 95.815 1840 60 5 890 2720 206187043 206188874 0.000000e+00 2955.0
12 TraesCS3A01G161200 chr3B 94.043 1024 38 9 3925 4942 206190025 206191031 0.000000e+00 1531.0
13 TraesCS3A01G161200 chr3B 95.349 559 20 3 2718 3272 206188824 206189380 0.000000e+00 883.0
14 TraesCS3A01G161200 chr3B 90.233 686 36 16 3272 3930 206189294 206189975 0.000000e+00 867.0
15 TraesCS3A01G161200 chr3B 88.261 460 43 8 5154 5612 206191301 206191750 1.800000e-149 540.0
16 TraesCS3A01G161200 chr2B 92.432 740 52 4 1 737 373097638 373096900 0.000000e+00 1053.0
17 TraesCS3A01G161200 chr2B 92.318 742 51 5 1 737 8228368 8227628 0.000000e+00 1050.0
18 TraesCS3A01G161200 chr2B 92.297 740 54 3 1 737 8072614 8071875 0.000000e+00 1048.0
19 TraesCS3A01G161200 chr2B 86.992 123 14 2 5325 5446 380306149 380306028 2.760000e-28 137.0
20 TraesCS3A01G161200 chr2A 92.847 727 49 3 1 725 50050789 50050064 0.000000e+00 1051.0
21 TraesCS3A01G161200 chr2A 91.204 739 62 3 1 736 767550470 767551208 0.000000e+00 1002.0
22 TraesCS3A01G161200 chr2D 92.194 743 54 3 1 739 101336105 101335363 0.000000e+00 1048.0
23 TraesCS3A01G161200 chr6D 91.925 743 54 4 1 737 433502802 433502060 0.000000e+00 1035.0
24 TraesCS3A01G161200 chr6D 82.014 139 21 4 5322 5458 433644108 433644244 1.290000e-21 115.0
25 TraesCS3A01G161200 chr5B 90.591 744 66 4 1 742 587458652 587459393 0.000000e+00 983.0
26 TraesCS3A01G161200 chr5A 93.041 661 42 4 83 740 97566405 97565746 0.000000e+00 963.0
27 TraesCS3A01G161200 chr1B 89.881 168 15 2 1267 1433 646191858 646191692 1.240000e-51 215.0
28 TraesCS3A01G161200 chr1B 82.517 143 22 3 5317 5457 400368990 400369131 7.730000e-24 122.0
29 TraesCS3A01G161200 chr1D 88.690 168 17 2 1267 1433 467938235 467938069 2.680000e-48 204.0
30 TraesCS3A01G161200 chr1D 87.603 121 13 2 5321 5440 426173332 426173451 7.670000e-29 139.0
31 TraesCS3A01G161200 chr1D 84.962 133 18 2 5320 5451 377205377 377205246 3.570000e-27 134.0
32 TraesCS3A01G161200 chr1A 88.690 168 17 2 1267 1433 560962621 560962455 2.680000e-48 204.0
33 TraesCS3A01G161200 chr1A 87.218 133 14 3 5320 5451 521288087 521288217 1.280000e-31 148.0
34 TraesCS3A01G161200 chr7D 85.000 140 19 2 5320 5458 199356252 199356114 2.130000e-29 141.0
35 TraesCS3A01G161200 chr7B 82.877 146 22 3 5320 5464 163488975 163488832 1.660000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G161200 chr3A 162755053 162760732 5679 False 2182.240000 10490 92.8744 1 5680 5 chr3A.!!$F1 5679
1 TraesCS3A01G161200 chr3D 143138781 143142987 4206 False 1200.783333 3821 94.6875 833 4988 6 chr3D.!!$F1 4155
2 TraesCS3A01G161200 chr3B 206187043 206191750 4707 False 1355.200000 2955 92.7402 890 5612 5 chr3B.!!$F1 4722
3 TraesCS3A01G161200 chr2B 373096900 373097638 738 True 1053.000000 1053 92.4320 1 737 1 chr2B.!!$R3 736
4 TraesCS3A01G161200 chr2B 8227628 8228368 740 True 1050.000000 1050 92.3180 1 737 1 chr2B.!!$R2 736
5 TraesCS3A01G161200 chr2B 8071875 8072614 739 True 1048.000000 1048 92.2970 1 737 1 chr2B.!!$R1 736
6 TraesCS3A01G161200 chr2A 50050064 50050789 725 True 1051.000000 1051 92.8470 1 725 1 chr2A.!!$R1 724
7 TraesCS3A01G161200 chr2A 767550470 767551208 738 False 1002.000000 1002 91.2040 1 736 1 chr2A.!!$F1 735
8 TraesCS3A01G161200 chr2D 101335363 101336105 742 True 1048.000000 1048 92.1940 1 739 1 chr2D.!!$R1 738
9 TraesCS3A01G161200 chr6D 433502060 433502802 742 True 1035.000000 1035 91.9250 1 737 1 chr6D.!!$R1 736
10 TraesCS3A01G161200 chr5B 587458652 587459393 741 False 983.000000 983 90.5910 1 742 1 chr5B.!!$F1 741
11 TraesCS3A01G161200 chr5A 97565746 97566405 659 True 963.000000 963 93.0410 83 740 1 chr5A.!!$R1 657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
594 602 0.177141 GGCTAATATGGCGGCGGATA 59.823 55.000 9.78 0.00 0.00 2.59 F
1598 1618 0.108615 CAGTCCTTGCGGTAGGTCTG 60.109 60.000 10.48 10.48 42.30 3.51 F
1599 1619 0.542232 AGTCCTTGCGGTAGGTCTGT 60.542 55.000 0.00 0.00 33.30 3.41 F
2577 2599 1.402613 TCGATGTGAGAAATCGCGGTA 59.597 47.619 6.13 0.00 45.09 4.02 F
3754 3851 0.253044 GTGAAGCCCTGCATAGGTCA 59.747 55.000 4.93 0.00 42.96 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2365 2386 0.326264 AGAACCCTCTGCAAATCGCT 59.674 50.000 0.00 0.0 43.06 4.93 R
2672 2694 0.823356 GTGGACACACACAGCCCATT 60.823 55.000 0.00 0.0 46.90 3.16 R
2683 2705 2.080693 GTCACAACAACAGTGGACACA 58.919 47.619 5.14 0.0 37.58 3.72 R
4261 4428 0.899019 TGCACGGTATAGCCAGTCAA 59.101 50.000 0.00 0.0 36.97 3.18 R
5629 5902 0.036732 TGCCAGCCCTTAGTTCTGTG 59.963 55.000 0.00 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.390967 TGTCCAGGAGTCAAATTCAGTCA 59.609 43.478 0.00 0.00 0.00 3.41
72 73 3.965470 TCTACTGGCCATAGGTGTCTA 57.035 47.619 5.51 0.00 0.00 2.59
255 260 7.936847 TGGTCTAGTTAAACTCAATGTTGATGT 59.063 33.333 0.00 0.00 39.13 3.06
297 302 2.840974 CTGGAAGTACGGGTGCAAG 58.159 57.895 0.00 0.00 0.00 4.01
315 320 3.966218 GCAAGTTTACGTGATGACACAAC 59.034 43.478 0.00 0.00 46.20 3.32
356 361 6.169800 TCTTGTGTTGATATTCCGTTCATGA 58.830 36.000 0.00 0.00 0.00 3.07
431 437 4.822685 AATGATATGGGCTGCAACAAAA 57.177 36.364 0.50 0.00 0.00 2.44
444 450 2.812011 GCAACAAAATCTACGTGGAGGT 59.188 45.455 7.91 0.35 0.00 3.85
493 499 0.324645 AGAATGGCGGCAATTCCCTT 60.325 50.000 23.19 3.93 35.09 3.95
533 539 9.448294 CAATCTATGAAGAATGCTCTTTTTAGC 57.552 33.333 0.00 0.00 42.19 3.09
534 540 8.977267 ATCTATGAAGAATGCTCTTTTTAGCT 57.023 30.769 0.00 0.00 42.19 3.32
535 541 8.430801 TCTATGAAGAATGCTCTTTTTAGCTC 57.569 34.615 0.00 0.00 42.19 4.09
536 542 5.536554 TGAAGAATGCTCTTTTTAGCTCG 57.463 39.130 0.00 0.00 42.19 5.03
537 543 4.142816 TGAAGAATGCTCTTTTTAGCTCGC 60.143 41.667 0.00 0.00 42.19 5.03
543 551 4.870363 TGCTCTTTTTAGCTCGCATTTTT 58.130 34.783 0.00 0.00 43.19 1.94
578 586 0.639392 ATCACTGTCCTAGGGAGGCT 59.361 55.000 9.46 0.00 43.44 4.58
594 602 0.177141 GGCTAATATGGCGGCGGATA 59.823 55.000 9.78 0.00 0.00 2.59
599 607 4.755123 GCTAATATGGCGGCGGATATATTT 59.245 41.667 9.78 0.17 30.70 1.40
610 618 6.164176 CGGCGGATATATTTTCTAGGAACTT 58.836 40.000 0.00 0.00 41.75 2.66
625 633 3.835395 AGGAACTTGGAGACTTCTCGAAT 59.165 43.478 4.39 0.00 38.96 3.34
630 638 7.010645 GGAACTTGGAGACTTCTCGAATAATTC 59.989 40.741 4.39 8.39 43.76 2.17
634 642 8.521170 TTGGAGACTTCTCGAATAATTCTCTA 57.479 34.615 18.76 13.93 43.76 2.43
657 665 0.250770 GTTGGAGCCTCCGAGGTTTT 60.251 55.000 16.09 2.34 40.17 2.43
671 679 5.463061 TCCGAGGTTTTTAGTAGACGTTTTG 59.537 40.000 0.00 0.00 0.00 2.44
716 724 9.500785 TTCTCACATGAAATATAAATCGCCATA 57.499 29.630 0.00 0.00 0.00 2.74
770 778 9.757227 TTCAACTTATACAAATCAAACCAAAGG 57.243 29.630 0.00 0.00 0.00 3.11
771 779 9.137459 TCAACTTATACAAATCAAACCAAAGGA 57.863 29.630 0.00 0.00 0.00 3.36
772 780 9.410556 CAACTTATACAAATCAAACCAAAGGAG 57.589 33.333 0.00 0.00 0.00 3.69
773 781 7.602753 ACTTATACAAATCAAACCAAAGGAGC 58.397 34.615 0.00 0.00 0.00 4.70
774 782 3.751479 ACAAATCAAACCAAAGGAGCC 57.249 42.857 0.00 0.00 0.00 4.70
775 783 2.368548 ACAAATCAAACCAAAGGAGCCC 59.631 45.455 0.00 0.00 0.00 5.19
776 784 2.634453 CAAATCAAACCAAAGGAGCCCT 59.366 45.455 0.00 0.00 33.87 5.19
777 785 1.928868 ATCAAACCAAAGGAGCCCTG 58.071 50.000 0.00 0.00 32.13 4.45
778 786 0.850100 TCAAACCAAAGGAGCCCTGA 59.150 50.000 0.00 0.00 32.13 3.86
779 787 1.202927 TCAAACCAAAGGAGCCCTGAG 60.203 52.381 0.00 0.00 32.13 3.35
780 788 0.853530 AAACCAAAGGAGCCCTGAGT 59.146 50.000 0.00 0.00 32.13 3.41
781 789 0.402121 AACCAAAGGAGCCCTGAGTC 59.598 55.000 0.00 0.00 32.13 3.36
782 790 1.078848 CCAAAGGAGCCCTGAGTCG 60.079 63.158 0.00 0.00 32.13 4.18
783 791 1.078848 CAAAGGAGCCCTGAGTCGG 60.079 63.158 0.00 0.00 32.13 4.79
790 798 4.821935 CCCTGAGTCGGGCTTTTT 57.178 55.556 13.07 0.00 37.41 1.94
810 818 2.668144 TTGTTAAGGGTCAGTTGGGG 57.332 50.000 0.00 0.00 0.00 4.96
811 819 1.525175 TGTTAAGGGTCAGTTGGGGT 58.475 50.000 0.00 0.00 0.00 4.95
812 820 1.854280 TGTTAAGGGTCAGTTGGGGTT 59.146 47.619 0.00 0.00 0.00 4.11
813 821 2.245287 TGTTAAGGGTCAGTTGGGGTTT 59.755 45.455 0.00 0.00 0.00 3.27
814 822 3.302161 GTTAAGGGTCAGTTGGGGTTTT 58.698 45.455 0.00 0.00 0.00 2.43
815 823 2.561209 AAGGGTCAGTTGGGGTTTTT 57.439 45.000 0.00 0.00 0.00 1.94
844 852 6.547141 TCTTTATTTTGATGATCATTCGGGCT 59.453 34.615 10.14 0.00 0.00 5.19
845 853 6.713762 TTATTTTGATGATCATTCGGGCTT 57.286 33.333 10.14 0.00 0.00 4.35
876 884 2.352715 GGGCACATTCTTAACCACAAGC 60.353 50.000 0.00 0.00 0.00 4.01
1048 1063 2.742710 TTTCCCGTCACGAGCACGAG 62.743 60.000 11.40 1.84 42.66 4.18
1589 1609 0.171231 TCAGATCGACAGTCCTTGCG 59.829 55.000 0.00 0.00 0.00 4.85
1590 1610 0.803768 CAGATCGACAGTCCTTGCGG 60.804 60.000 0.00 0.00 0.00 5.69
1592 1612 0.454600 GATCGACAGTCCTTGCGGTA 59.545 55.000 0.00 0.00 0.00 4.02
1593 1613 0.456221 ATCGACAGTCCTTGCGGTAG 59.544 55.000 0.00 0.00 0.00 3.18
1594 1614 1.153823 CGACAGTCCTTGCGGTAGG 60.154 63.158 0.00 0.00 36.59 3.18
1595 1615 1.874345 CGACAGTCCTTGCGGTAGGT 61.874 60.000 0.00 0.00 36.63 3.08
1596 1616 0.108756 GACAGTCCTTGCGGTAGGTC 60.109 60.000 0.00 0.00 36.63 3.85
1597 1617 0.542232 ACAGTCCTTGCGGTAGGTCT 60.542 55.000 0.00 0.00 36.63 3.85
1598 1618 0.108615 CAGTCCTTGCGGTAGGTCTG 60.109 60.000 10.48 10.48 42.30 3.51
1599 1619 0.542232 AGTCCTTGCGGTAGGTCTGT 60.542 55.000 0.00 0.00 33.30 3.41
1632 1652 5.594926 AGATTTCCTTCAAGTGCAAGTTTG 58.405 37.500 0.00 0.00 0.00 2.93
1661 1681 2.363680 TGGTGTATGCCCTTTGTTGTTG 59.636 45.455 0.00 0.00 0.00 3.33
1770 1790 4.035675 GCATCTTTGTTTAGAATCCGGGAG 59.964 45.833 0.00 0.00 0.00 4.30
1843 1863 5.764686 AGACACTTATCTGTTGATGCAAACA 59.235 36.000 4.02 4.02 37.71 2.83
1897 1917 5.587388 AGCATCTGTCATGGTTAAATTGG 57.413 39.130 0.00 0.00 0.00 3.16
1917 1937 9.723601 AAATTGGCAATTACTACATTGTTCATT 57.276 25.926 24.58 1.63 36.63 2.57
1937 1957 7.825331 TCATTGGTTGGTATTTTCTGTTGTA 57.175 32.000 0.00 0.00 0.00 2.41
2095 2116 2.028020 CCTTTCAGGTCCTTAGCGACTT 60.028 50.000 0.00 0.00 33.07 3.01
2471 2492 3.275143 TGCGGATTTGTATAAGGGTGTG 58.725 45.455 0.00 0.00 0.00 3.82
2560 2582 3.909430 ACTTTTCATCTAAGCACGTCGA 58.091 40.909 0.00 0.00 0.00 4.20
2577 2599 1.402613 TCGATGTGAGAAATCGCGGTA 59.597 47.619 6.13 0.00 45.09 4.02
2672 2694 4.334552 TGGAGCAAGCATATTGTTCTTCA 58.665 39.130 4.78 0.00 31.55 3.02
2682 2704 3.947910 ATTGTTCTTCAATGGGCTGTG 57.052 42.857 0.00 0.00 44.06 3.66
2683 2705 2.363306 TGTTCTTCAATGGGCTGTGT 57.637 45.000 0.00 0.00 0.00 3.72
2693 2715 1.893808 GGGCTGTGTGTGTCCACTG 60.894 63.158 0.00 0.00 42.34 3.66
2731 2753 8.823220 ATTAATTTAGTTTCTATGGCCTGTGT 57.177 30.769 3.32 0.00 0.00 3.72
3116 3138 9.772973 ATGAGTTTTACTTGTACACTGATACAA 57.227 29.630 0.00 8.31 41.63 2.41
3285 3363 6.005198 TGTAACAATAGTTGGGAAAACGGAT 58.995 36.000 0.00 0.00 38.69 4.18
3372 3450 7.548097 TGTAACAACAGATTAACTTGCCAAAA 58.452 30.769 0.00 0.00 0.00 2.44
3581 3662 6.721208 AGCTTTTCATCTTTCCCTTGTGAATA 59.279 34.615 0.00 0.00 0.00 1.75
3754 3851 0.253044 GTGAAGCCCTGCATAGGTCA 59.747 55.000 4.93 0.00 42.96 4.02
3763 3860 3.389329 CCCTGCATAGGTCATTCTACAGT 59.611 47.826 0.00 0.00 42.96 3.55
4390 4557 1.937924 GCCAATACCCAAGGAGCCCT 61.938 60.000 0.00 0.00 33.87 5.19
4572 4739 4.805744 AGGTAGATTTCTATCTGTCCGGT 58.194 43.478 0.00 0.00 41.25 5.28
4574 4741 5.661759 AGGTAGATTTCTATCTGTCCGGTTT 59.338 40.000 0.00 0.00 41.25 3.27
4735 4905 5.693769 TTAATCTGTTCTTCCTCGGGATT 57.306 39.130 0.00 0.00 0.00 3.01
4744 4930 1.153086 CCTCGGGATTGCAGGAAGG 60.153 63.158 0.00 0.00 0.00 3.46
4745 4931 1.604378 CTCGGGATTGCAGGAAGGT 59.396 57.895 0.00 0.00 0.00 3.50
4746 4932 0.035056 CTCGGGATTGCAGGAAGGTT 60.035 55.000 0.00 0.00 0.00 3.50
4747 4933 0.404040 TCGGGATTGCAGGAAGGTTT 59.596 50.000 0.00 0.00 0.00 3.27
4748 4934 0.527565 CGGGATTGCAGGAAGGTTTG 59.472 55.000 0.00 0.00 0.00 2.93
4749 4935 1.886222 CGGGATTGCAGGAAGGTTTGA 60.886 52.381 0.00 0.00 0.00 2.69
4750 4936 1.821136 GGGATTGCAGGAAGGTTTGAG 59.179 52.381 0.00 0.00 0.00 3.02
4751 4937 2.519013 GGATTGCAGGAAGGTTTGAGT 58.481 47.619 0.00 0.00 0.00 3.41
4752 4938 2.489722 GGATTGCAGGAAGGTTTGAGTC 59.510 50.000 0.00 0.00 0.00 3.36
4753 4939 1.981256 TTGCAGGAAGGTTTGAGTCC 58.019 50.000 0.00 0.00 0.00 3.85
4754 4940 0.843309 TGCAGGAAGGTTTGAGTCCA 59.157 50.000 0.00 0.00 33.57 4.02
4755 4941 1.202806 TGCAGGAAGGTTTGAGTCCAG 60.203 52.381 0.00 0.00 33.57 3.86
4756 4942 1.072331 GCAGGAAGGTTTGAGTCCAGA 59.928 52.381 0.00 0.00 33.57 3.86
4757 4943 2.487265 GCAGGAAGGTTTGAGTCCAGAA 60.487 50.000 0.00 0.00 33.57 3.02
4758 4944 3.820557 CAGGAAGGTTTGAGTCCAGAAA 58.179 45.455 0.00 0.00 33.57 2.52
4759 4945 3.565902 CAGGAAGGTTTGAGTCCAGAAAC 59.434 47.826 0.00 0.00 33.57 2.78
4776 4962 7.955864 GTCCAGAAACGTTATACAGATTTTGTC 59.044 37.037 0.00 0.00 41.29 3.18
4783 4969 5.646360 CGTTATACAGATTTTGTCCCCTGTT 59.354 40.000 0.00 0.00 41.29 3.16
4789 4975 2.516227 TTTTGTCCCCTGTTGTGTCA 57.484 45.000 0.00 0.00 0.00 3.58
4896 5084 8.780249 AGTACCAATTTAGTGTACAAATGACAC 58.220 33.333 0.00 0.00 46.20 3.67
4907 5095 2.104111 ACAAATGACACGGGAAGTCTGA 59.896 45.455 0.00 0.00 36.94 3.27
4960 5150 1.846541 GCTTCGTCAGCTAGACCATC 58.153 55.000 9.71 0.00 46.27 3.51
4961 5151 1.407258 GCTTCGTCAGCTAGACCATCT 59.593 52.381 9.71 0.00 46.27 2.90
4968 5158 6.477253 TCGTCAGCTAGACCATCTCTATTAT 58.523 40.000 9.71 0.00 44.66 1.28
4997 5189 4.522789 GCACAGGGAAGTCTGGATTTTTAA 59.477 41.667 0.00 0.00 38.98 1.52
5006 5198 6.835819 AGTCTGGATTTTTAAAGTAAGGGC 57.164 37.500 0.00 0.00 0.00 5.19
5009 5201 5.182380 TCTGGATTTTTAAAGTAAGGGCGTG 59.818 40.000 0.00 0.00 0.00 5.34
5034 5226 0.234884 CGTTGACTCTCAAAACGCCC 59.765 55.000 0.00 0.00 38.22 6.13
5035 5227 1.305201 GTTGACTCTCAAAACGCCCA 58.695 50.000 0.00 0.00 38.22 5.36
5039 5231 1.880027 GACTCTCAAAACGCCCACATT 59.120 47.619 0.00 0.00 0.00 2.71
5040 5232 1.880027 ACTCTCAAAACGCCCACATTC 59.120 47.619 0.00 0.00 0.00 2.67
5041 5233 2.154462 CTCTCAAAACGCCCACATTCT 58.846 47.619 0.00 0.00 0.00 2.40
5042 5234 2.151202 TCTCAAAACGCCCACATTCTC 58.849 47.619 0.00 0.00 0.00 2.87
5044 5236 0.243636 CAAAACGCCCACATTCTCCC 59.756 55.000 0.00 0.00 0.00 4.30
5045 5237 0.898326 AAAACGCCCACATTCTCCCC 60.898 55.000 0.00 0.00 0.00 4.81
5046 5238 1.789576 AAACGCCCACATTCTCCCCT 61.790 55.000 0.00 0.00 0.00 4.79
5047 5239 1.789576 AACGCCCACATTCTCCCCTT 61.790 55.000 0.00 0.00 0.00 3.95
5048 5240 1.000896 CGCCCACATTCTCCCCTTT 60.001 57.895 0.00 0.00 0.00 3.11
5050 5242 0.039618 GCCCACATTCTCCCCTTTGA 59.960 55.000 0.00 0.00 0.00 2.69
5053 5245 2.440409 CCACATTCTCCCCTTTGAGTG 58.560 52.381 0.00 0.00 33.93 3.51
5054 5246 2.040278 CCACATTCTCCCCTTTGAGTGA 59.960 50.000 0.00 0.00 33.93 3.41
5057 5294 4.768968 CACATTCTCCCCTTTGAGTGAAAT 59.231 41.667 0.00 0.00 33.93 2.17
5060 5297 4.453480 TCTCCCCTTTGAGTGAAATTGT 57.547 40.909 0.00 0.00 33.93 2.71
5063 5300 4.079253 TCCCCTTTGAGTGAAATTGTAGC 58.921 43.478 0.00 0.00 0.00 3.58
5065 5302 4.082571 CCCCTTTGAGTGAAATTGTAGCAG 60.083 45.833 0.00 0.00 0.00 4.24
5069 5306 6.205464 CCTTTGAGTGAAATTGTAGCAGAAGA 59.795 38.462 0.00 0.00 0.00 2.87
5087 5324 4.702131 AGAAGAAAGGAAAATCCATGGACG 59.298 41.667 18.99 0.00 39.61 4.79
5088 5325 4.301072 AGAAAGGAAAATCCATGGACGA 57.699 40.909 18.99 0.00 39.61 4.20
5089 5326 4.265073 AGAAAGGAAAATCCATGGACGAG 58.735 43.478 18.99 0.00 39.61 4.18
5090 5327 2.044123 AGGAAAATCCATGGACGAGC 57.956 50.000 18.99 7.27 39.61 5.03
5092 5329 0.657840 GAAAATCCATGGACGAGCCG 59.342 55.000 18.99 0.00 40.66 5.52
5093 5330 1.376609 AAAATCCATGGACGAGCCGC 61.377 55.000 18.99 0.00 40.66 6.53
5094 5331 2.257409 AAATCCATGGACGAGCCGCT 62.257 55.000 18.99 0.00 40.66 5.52
5095 5332 2.650813 AATCCATGGACGAGCCGCTC 62.651 60.000 18.99 10.59 40.66 5.03
5096 5333 4.899239 CCATGGACGAGCCGCTCC 62.899 72.222 14.85 2.43 40.66 4.70
5097 5334 4.147449 CATGGACGAGCCGCTCCA 62.147 66.667 14.85 8.50 39.67 3.86
5104 5341 2.435059 GAGCCGCTCCACCTGAAC 60.435 66.667 9.42 0.00 0.00 3.18
5107 5344 2.738521 CCGCTCCACCTGAACGTG 60.739 66.667 0.00 0.00 30.60 4.49
5108 5345 2.029073 CGCTCCACCTGAACGTGT 59.971 61.111 0.00 0.00 31.47 4.49
5113 5350 1.068588 CTCCACCTGAACGTGTCTGAA 59.931 52.381 0.00 0.00 31.47 3.02
5119 5356 3.138304 CCTGAACGTGTCTGAATTCCAA 58.862 45.455 2.27 0.00 0.00 3.53
5124 5361 3.259064 ACGTGTCTGAATTCCAATACGG 58.741 45.455 21.67 10.40 32.97 4.02
5126 5363 3.682858 CGTGTCTGAATTCCAATACGGTT 59.317 43.478 14.57 0.00 35.57 4.44
5127 5364 4.435518 CGTGTCTGAATTCCAATACGGTTG 60.436 45.833 14.57 0.00 35.57 3.77
5142 5379 2.224185 ACGGTTGGGCCATTTTTCTTTC 60.224 45.455 7.26 0.00 36.97 2.62
5143 5380 2.224161 CGGTTGGGCCATTTTTCTTTCA 60.224 45.455 7.26 0.00 36.97 2.69
5152 5389 3.568007 CCATTTTTCTTTCACTCCGTCCA 59.432 43.478 0.00 0.00 0.00 4.02
5160 5397 3.485463 TTCACTCCGTCCATGTTTCTT 57.515 42.857 0.00 0.00 0.00 2.52
5161 5398 3.040147 TCACTCCGTCCATGTTTCTTC 57.960 47.619 0.00 0.00 0.00 2.87
5162 5399 2.076863 CACTCCGTCCATGTTTCTTCC 58.923 52.381 0.00 0.00 0.00 3.46
5168 5405 2.160417 CGTCCATGTTTCTTCCTTGCTC 59.840 50.000 0.00 0.00 0.00 4.26
5171 5408 3.072915 TCCATGTTTCTTCCTTGCTCAGA 59.927 43.478 0.00 0.00 0.00 3.27
5185 5422 1.047002 CTCAGAATCCGCATCCTCCT 58.953 55.000 0.00 0.00 0.00 3.69
5195 5432 3.666122 ATCCTCCTGTGGATGCCC 58.334 61.111 0.12 0.00 44.48 5.36
5196 5433 1.308128 ATCCTCCTGTGGATGCCCA 60.308 57.895 0.12 0.00 44.48 5.36
5205 5442 1.524961 TGGATGCCCACATACGTCC 59.475 57.895 0.00 0.00 40.37 4.79
5206 5443 1.594293 GGATGCCCACATACGTCCG 60.594 63.158 0.00 0.00 36.35 4.79
5207 5444 1.440060 GATGCCCACATACGTCCGA 59.560 57.895 0.00 0.00 36.35 4.55
5208 5445 0.179094 GATGCCCACATACGTCCGAA 60.179 55.000 0.00 0.00 36.35 4.30
5209 5446 0.250793 ATGCCCACATACGTCCGAAA 59.749 50.000 0.00 0.00 33.67 3.46
5210 5447 0.390603 TGCCCACATACGTCCGAAAG 60.391 55.000 0.00 0.00 0.00 2.62
5212 5449 1.355971 CCCACATACGTCCGAAAGTG 58.644 55.000 0.00 0.00 0.00 3.16
5220 5492 3.604875 ACGTCCGAAAGTGTCCAATAT 57.395 42.857 0.00 0.00 0.00 1.28
5242 5514 3.454082 TGTTGGGCCATTTTTCTTTCACT 59.546 39.130 7.26 0.00 0.00 3.41
5244 5516 2.632512 TGGGCCATTTTTCTTTCACTCC 59.367 45.455 0.00 0.00 0.00 3.85
5252 5524 1.712056 TTCTTTCACTCCGTCCCTGA 58.288 50.000 0.00 0.00 0.00 3.86
5260 5532 0.397816 CTCCGTCCCTGATTCTCCCT 60.398 60.000 0.00 0.00 0.00 4.20
5272 5544 1.283347 TTCTCCCTTGCTCAGCATCT 58.717 50.000 0.00 0.00 38.76 2.90
5291 5563 4.467861 TCTGCATCCTCCTCTATCTCTT 57.532 45.455 0.00 0.00 0.00 2.85
5292 5564 4.813809 TCTGCATCCTCCTCTATCTCTTT 58.186 43.478 0.00 0.00 0.00 2.52
5300 5572 0.465705 CTCTATCTCTTTGGCCGCCA 59.534 55.000 8.43 8.43 0.00 5.69
5303 5575 2.265467 TATCTCTTTGGCCGCCACCC 62.265 60.000 13.00 0.00 30.78 4.61
5316 5588 2.282816 CACCCGGGCATTGTTGGA 60.283 61.111 24.08 0.00 0.00 3.53
5317 5589 1.682005 CACCCGGGCATTGTTGGAT 60.682 57.895 24.08 0.00 0.00 3.41
5323 5595 0.174162 GGGCATTGTTGGATGTCTGC 59.826 55.000 0.00 0.00 32.32 4.26
5325 5597 0.179156 GCATTGTTGGATGTCTGCGG 60.179 55.000 0.00 0.00 0.00 5.69
5337 5609 0.320421 GTCTGCGGACTTTGTAGGCA 60.320 55.000 18.76 0.00 39.24 4.75
5407 5680 1.160137 GAGCAAAGTCATTCACGCCT 58.840 50.000 0.00 0.00 0.00 5.52
5423 5696 0.989890 GCCTTACGACTTAGCACGTG 59.010 55.000 12.28 12.28 42.61 4.49
5434 5707 1.921243 TAGCACGTGATCCATGAACG 58.079 50.000 22.23 1.34 42.82 3.95
5447 5720 2.981805 CCATGAACGCAATGTGAAGTTG 59.018 45.455 0.00 0.00 0.00 3.16
5458 5731 1.350684 TGTGAAGTTGCTAGGCCATCA 59.649 47.619 5.01 0.00 0.00 3.07
5489 5762 5.105716 GCAGTAGATTACACAAGTGGAGAGA 60.106 44.000 5.08 0.00 34.19 3.10
5495 5768 2.565841 ACACAAGTGGAGAGAAAGTGC 58.434 47.619 5.08 0.00 34.19 4.40
5517 5790 0.773644 ACCAGGCTCTTCAACCATGT 59.226 50.000 0.00 0.00 0.00 3.21
5560 5833 2.026915 TGCTGCTCTACATGTTGGTCAT 60.027 45.455 2.30 0.00 37.22 3.06
5574 5847 7.482474 CATGTTGGTCATGCATTCACTAAATA 58.518 34.615 0.00 0.00 45.69 1.40
5592 5865 9.586150 CACTAAATATTGCAACTCGATAATCAC 57.414 33.333 0.00 0.00 0.00 3.06
5607 5880 5.280011 CGATAATCACCCCCTTGTATAGCTT 60.280 44.000 0.00 0.00 0.00 3.74
5612 5885 1.202651 CCCCCTTGTATAGCTTGGACG 60.203 57.143 0.00 0.00 0.00 4.79
5613 5886 1.583054 CCCTTGTATAGCTTGGACGC 58.417 55.000 0.00 0.00 0.00 5.19
5614 5887 1.209128 CCTTGTATAGCTTGGACGCG 58.791 55.000 3.53 3.53 34.40 6.01
5615 5888 0.577269 CTTGTATAGCTTGGACGCGC 59.423 55.000 5.73 0.00 34.40 6.86
5616 5889 0.174845 TTGTATAGCTTGGACGCGCT 59.825 50.000 5.73 0.00 40.15 5.92
5617 5890 0.527600 TGTATAGCTTGGACGCGCTG 60.528 55.000 5.73 1.02 37.05 5.18
5618 5891 0.527817 GTATAGCTTGGACGCGCTGT 60.528 55.000 5.73 5.01 37.05 4.40
5627 5900 2.261361 ACGCGCTGTCATGCACTA 59.739 55.556 5.73 0.00 0.00 2.74
5628 5901 2.094659 ACGCGCTGTCATGCACTAC 61.095 57.895 5.73 0.00 0.00 2.73
5629 5902 2.802667 CGCGCTGTCATGCACTACC 61.803 63.158 5.56 0.00 0.00 3.18
5630 5903 1.741401 GCGCTGTCATGCACTACCA 60.741 57.895 0.00 0.00 0.00 3.25
5631 5904 1.970917 GCGCTGTCATGCACTACCAC 61.971 60.000 0.00 0.00 0.00 4.16
5632 5905 0.670239 CGCTGTCATGCACTACCACA 60.670 55.000 0.00 0.00 0.00 4.17
5633 5906 1.081892 GCTGTCATGCACTACCACAG 58.918 55.000 0.00 4.53 38.01 3.66
5634 5907 1.338105 GCTGTCATGCACTACCACAGA 60.338 52.381 11.47 0.00 37.28 3.41
5635 5908 2.871637 GCTGTCATGCACTACCACAGAA 60.872 50.000 11.47 0.00 37.28 3.02
5636 5909 2.738846 CTGTCATGCACTACCACAGAAC 59.261 50.000 3.05 0.00 37.28 3.01
5637 5910 2.368548 TGTCATGCACTACCACAGAACT 59.631 45.455 0.00 0.00 0.00 3.01
5638 5911 3.576550 TGTCATGCACTACCACAGAACTA 59.423 43.478 0.00 0.00 0.00 2.24
5639 5912 4.039852 TGTCATGCACTACCACAGAACTAA 59.960 41.667 0.00 0.00 0.00 2.24
5640 5913 4.627467 GTCATGCACTACCACAGAACTAAG 59.373 45.833 0.00 0.00 0.00 2.18
5641 5914 3.678056 TGCACTACCACAGAACTAAGG 57.322 47.619 0.00 0.00 0.00 2.69
5642 5915 2.301870 TGCACTACCACAGAACTAAGGG 59.698 50.000 0.00 0.00 0.00 3.95
5643 5916 2.935676 GCACTACCACAGAACTAAGGGC 60.936 54.545 0.00 0.00 0.00 5.19
5644 5917 2.567615 CACTACCACAGAACTAAGGGCT 59.432 50.000 0.00 0.00 0.00 5.19
5645 5918 2.567615 ACTACCACAGAACTAAGGGCTG 59.432 50.000 0.00 0.00 35.81 4.85
5646 5919 0.693049 ACCACAGAACTAAGGGCTGG 59.307 55.000 0.00 0.00 34.05 4.85
5647 5920 0.678048 CCACAGAACTAAGGGCTGGC 60.678 60.000 0.00 0.00 34.05 4.85
5648 5921 0.036732 CACAGAACTAAGGGCTGGCA 59.963 55.000 2.88 0.00 34.05 4.92
5649 5922 0.771127 ACAGAACTAAGGGCTGGCAA 59.229 50.000 2.88 0.00 34.05 4.52
5650 5923 1.355720 ACAGAACTAAGGGCTGGCAAT 59.644 47.619 2.88 0.00 34.05 3.56
5651 5924 2.225117 ACAGAACTAAGGGCTGGCAATT 60.225 45.455 2.88 0.00 34.05 2.32
5652 5925 2.827921 CAGAACTAAGGGCTGGCAATTT 59.172 45.455 2.88 0.00 0.00 1.82
5653 5926 4.016444 CAGAACTAAGGGCTGGCAATTTA 58.984 43.478 2.88 0.00 0.00 1.40
5654 5927 4.017126 AGAACTAAGGGCTGGCAATTTAC 58.983 43.478 2.88 0.00 0.00 2.01
5655 5928 3.449746 ACTAAGGGCTGGCAATTTACA 57.550 42.857 2.88 0.00 0.00 2.41
5656 5929 3.981212 ACTAAGGGCTGGCAATTTACAT 58.019 40.909 2.88 0.00 0.00 2.29
5657 5930 4.352893 ACTAAGGGCTGGCAATTTACATT 58.647 39.130 2.88 0.00 0.00 2.71
5658 5931 3.893326 AAGGGCTGGCAATTTACATTC 57.107 42.857 2.88 0.00 0.00 2.67
5659 5932 2.818921 AGGGCTGGCAATTTACATTCA 58.181 42.857 2.88 0.00 0.00 2.57
5660 5933 3.377573 AGGGCTGGCAATTTACATTCAT 58.622 40.909 2.88 0.00 0.00 2.57
5661 5934 4.545678 AGGGCTGGCAATTTACATTCATA 58.454 39.130 2.88 0.00 0.00 2.15
5662 5935 4.342092 AGGGCTGGCAATTTACATTCATAC 59.658 41.667 2.88 0.00 0.00 2.39
5663 5936 4.099266 GGGCTGGCAATTTACATTCATACA 59.901 41.667 2.88 0.00 0.00 2.29
5664 5937 5.221501 GGGCTGGCAATTTACATTCATACAT 60.222 40.000 2.88 0.00 0.00 2.29
5665 5938 6.282930 GGCTGGCAATTTACATTCATACATT 58.717 36.000 0.00 0.00 0.00 2.71
5666 5939 6.201425 GGCTGGCAATTTACATTCATACATTG 59.799 38.462 0.00 0.00 0.00 2.82
5667 5940 6.757947 GCTGGCAATTTACATTCATACATTGT 59.242 34.615 0.00 0.00 28.94 2.71
5668 5941 7.278424 GCTGGCAATTTACATTCATACATTGTT 59.722 33.333 0.00 0.00 28.94 2.83
5669 5942 9.153721 CTGGCAATTTACATTCATACATTGTTT 57.846 29.630 0.00 0.00 28.94 2.83
5670 5943 8.933807 TGGCAATTTACATTCATACATTGTTTG 58.066 29.630 0.00 0.00 28.94 2.93
5671 5944 9.149225 GGCAATTTACATTCATACATTGTTTGA 57.851 29.630 5.92 5.92 28.94 2.69
5679 5952 9.985730 ACATTCATACATTGTTTGATGAAACTT 57.014 25.926 14.33 0.72 40.61 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.256631 AGCCACCAATGACTGAATTTGAC 59.743 43.478 0.00 0.00 0.00 3.18
25 26 2.091541 CGGTTAACATCAGCCACCAAT 58.908 47.619 8.10 0.00 0.00 3.16
72 73 1.192146 ACGCTCCCACCACACATACT 61.192 55.000 0.00 0.00 0.00 2.12
174 179 9.878667 TGATTCTCATATTTTTGAATTGTGCAT 57.121 25.926 0.00 0.00 30.41 3.96
175 180 9.361315 CTGATTCTCATATTTTTGAATTGTGCA 57.639 29.630 0.00 0.00 30.41 4.57
183 188 9.117183 CATGTCTCCTGATTCTCATATTTTTGA 57.883 33.333 0.00 0.00 0.00 2.69
225 230 7.016153 ACATTGAGTTTAACTAGACCATCCA 57.984 36.000 0.00 0.00 0.00 3.41
255 260 7.819415 CAGTACCTCTGTCTTGATCAAATGTAA 59.181 37.037 9.88 0.00 39.17 2.41
259 264 5.485353 TCCAGTACCTCTGTCTTGATCAAAT 59.515 40.000 9.88 0.00 42.19 2.32
283 288 2.137523 CGTAAACTTGCACCCGTACTT 58.862 47.619 0.00 0.00 0.00 2.24
356 361 2.957402 TCTGCTGTCCCAACATCTTT 57.043 45.000 0.00 0.00 34.13 2.52
431 437 2.467880 ACAATCCACCTCCACGTAGAT 58.532 47.619 0.00 0.00 0.00 1.98
444 450 6.823286 TCTCAATTACCTCCATACAATCCA 57.177 37.500 0.00 0.00 0.00 3.41
543 551 9.613428 AGGACAGTGATGAAAATATATCGAAAA 57.387 29.630 0.00 0.00 0.00 2.29
553 561 5.365021 CTCCCTAGGACAGTGATGAAAAT 57.635 43.478 11.48 0.00 0.00 1.82
578 586 6.588204 AGAAAATATATCCGCCGCCATATTA 58.412 36.000 0.00 0.00 0.00 0.98
594 602 9.052365 AGAAGTCTCCAAGTTCCTAGAAAATAT 57.948 33.333 0.00 0.00 37.96 1.28
599 607 4.459685 CGAGAAGTCTCCAAGTTCCTAGAA 59.540 45.833 2.75 0.00 39.79 2.10
610 618 7.993758 TCTAGAGAATTATTCGAGAAGTCTCCA 59.006 37.037 24.30 16.18 44.96 3.86
625 633 5.364157 GGAGGCTCCAACTTCTAGAGAATTA 59.636 44.000 28.55 0.00 36.28 1.40
630 638 1.407258 CGGAGGCTCCAACTTCTAGAG 59.593 57.143 31.69 8.75 35.91 2.43
634 642 1.261238 CCTCGGAGGCTCCAACTTCT 61.261 60.000 31.69 0.00 35.91 2.85
671 679 8.869897 TGTGAGAATAAAGATACATCGTTTGAC 58.130 33.333 0.00 0.00 31.22 3.18
744 752 9.757227 CCTTTGGTTTGATTTGTATAAGTTGAA 57.243 29.630 0.00 0.00 0.00 2.69
745 753 9.137459 TCCTTTGGTTTGATTTGTATAAGTTGA 57.863 29.630 0.00 0.00 0.00 3.18
746 754 9.410556 CTCCTTTGGTTTGATTTGTATAAGTTG 57.589 33.333 0.00 0.00 0.00 3.16
747 755 8.088365 GCTCCTTTGGTTTGATTTGTATAAGTT 58.912 33.333 0.00 0.00 0.00 2.66
748 756 7.309805 GGCTCCTTTGGTTTGATTTGTATAAGT 60.310 37.037 0.00 0.00 0.00 2.24
749 757 7.035612 GGCTCCTTTGGTTTGATTTGTATAAG 58.964 38.462 0.00 0.00 0.00 1.73
750 758 6.071051 GGGCTCCTTTGGTTTGATTTGTATAA 60.071 38.462 0.00 0.00 0.00 0.98
751 759 5.420739 GGGCTCCTTTGGTTTGATTTGTATA 59.579 40.000 0.00 0.00 0.00 1.47
752 760 4.222810 GGGCTCCTTTGGTTTGATTTGTAT 59.777 41.667 0.00 0.00 0.00 2.29
753 761 3.576550 GGGCTCCTTTGGTTTGATTTGTA 59.423 43.478 0.00 0.00 0.00 2.41
754 762 2.368548 GGGCTCCTTTGGTTTGATTTGT 59.631 45.455 0.00 0.00 0.00 2.83
755 763 2.634453 AGGGCTCCTTTGGTTTGATTTG 59.366 45.455 0.00 0.00 0.00 2.32
756 764 2.634453 CAGGGCTCCTTTGGTTTGATTT 59.366 45.455 0.00 0.00 0.00 2.17
757 765 2.158325 TCAGGGCTCCTTTGGTTTGATT 60.158 45.455 0.00 0.00 0.00 2.57
758 766 1.428912 TCAGGGCTCCTTTGGTTTGAT 59.571 47.619 0.00 0.00 0.00 2.57
759 767 0.850100 TCAGGGCTCCTTTGGTTTGA 59.150 50.000 0.00 0.00 0.00 2.69
760 768 1.251251 CTCAGGGCTCCTTTGGTTTG 58.749 55.000 0.00 0.00 0.00 2.93
761 769 0.853530 ACTCAGGGCTCCTTTGGTTT 59.146 50.000 0.00 0.00 0.00 3.27
762 770 0.402121 GACTCAGGGCTCCTTTGGTT 59.598 55.000 0.00 0.00 0.00 3.67
763 771 1.831652 CGACTCAGGGCTCCTTTGGT 61.832 60.000 0.00 0.00 0.00 3.67
764 772 1.078848 CGACTCAGGGCTCCTTTGG 60.079 63.158 0.00 0.00 0.00 3.28
765 773 1.078848 CCGACTCAGGGCTCCTTTG 60.079 63.158 0.00 0.00 0.00 2.77
766 774 2.294078 CCCGACTCAGGGCTCCTTT 61.294 63.158 0.00 0.00 45.72 3.11
767 775 2.685380 CCCGACTCAGGGCTCCTT 60.685 66.667 0.00 0.00 45.72 3.36
788 796 3.707102 CCCCAACTGACCCTTAACAAAAA 59.293 43.478 0.00 0.00 0.00 1.94
789 797 3.301274 CCCCAACTGACCCTTAACAAAA 58.699 45.455 0.00 0.00 0.00 2.44
790 798 2.245287 ACCCCAACTGACCCTTAACAAA 59.755 45.455 0.00 0.00 0.00 2.83
791 799 1.854280 ACCCCAACTGACCCTTAACAA 59.146 47.619 0.00 0.00 0.00 2.83
792 800 1.525175 ACCCCAACTGACCCTTAACA 58.475 50.000 0.00 0.00 0.00 2.41
793 801 2.670019 AACCCCAACTGACCCTTAAC 57.330 50.000 0.00 0.00 0.00 2.01
794 802 3.691698 AAAACCCCAACTGACCCTTAA 57.308 42.857 0.00 0.00 0.00 1.85
795 803 3.691698 AAAAACCCCAACTGACCCTTA 57.308 42.857 0.00 0.00 0.00 2.69
796 804 2.561209 AAAAACCCCAACTGACCCTT 57.439 45.000 0.00 0.00 0.00 3.95
814 822 9.292846 CGAATGATCATCAAAATAAAGAGCAAA 57.707 29.630 9.06 0.00 0.00 3.68
815 823 7.916977 CCGAATGATCATCAAAATAAAGAGCAA 59.083 33.333 9.06 0.00 0.00 3.91
816 824 7.420002 CCGAATGATCATCAAAATAAAGAGCA 58.580 34.615 9.06 0.00 0.00 4.26
817 825 6.860023 CCCGAATGATCATCAAAATAAAGAGC 59.140 38.462 9.06 0.00 0.00 4.09
818 826 6.860023 GCCCGAATGATCATCAAAATAAAGAG 59.140 38.462 9.06 0.00 0.00 2.85
819 827 6.547141 AGCCCGAATGATCATCAAAATAAAGA 59.453 34.615 9.06 0.00 0.00 2.52
820 828 6.742109 AGCCCGAATGATCATCAAAATAAAG 58.258 36.000 9.06 0.00 0.00 1.85
821 829 6.713762 AGCCCGAATGATCATCAAAATAAA 57.286 33.333 9.06 0.00 0.00 1.40
822 830 6.713762 AAGCCCGAATGATCATCAAAATAA 57.286 33.333 9.06 0.00 0.00 1.40
823 831 6.713762 AAAGCCCGAATGATCATCAAAATA 57.286 33.333 9.06 0.00 0.00 1.40
824 832 5.603170 AAAGCCCGAATGATCATCAAAAT 57.397 34.783 9.06 0.00 0.00 1.82
825 833 5.404466 AAAAGCCCGAATGATCATCAAAA 57.596 34.783 9.06 0.00 0.00 2.44
826 834 5.404466 AAAAAGCCCGAATGATCATCAAA 57.596 34.783 9.06 0.00 0.00 2.69
866 874 2.881513 TCTTTTGATGCGCTTGTGGTTA 59.118 40.909 9.73 0.00 0.00 2.85
867 875 1.680735 TCTTTTGATGCGCTTGTGGTT 59.319 42.857 9.73 0.00 0.00 3.67
876 884 3.058432 CAGCCCATCTATCTTTTGATGCG 60.058 47.826 0.00 0.00 39.88 4.73
991 999 4.510571 GTTGCGAGGAAATTAGTAAGGGA 58.489 43.478 0.00 0.00 0.00 4.20
1262 1281 0.927767 AGTAGTCGACCCCCATCTCT 59.072 55.000 13.01 0.00 0.00 3.10
1456 1476 7.834803 AGAAAAAGGAAATCTAATCTTGGCAG 58.165 34.615 0.00 0.00 0.00 4.85
1502 1522 4.621068 TGATTGGCGATGAACAGATTTC 57.379 40.909 0.00 0.00 0.00 2.17
1589 1609 3.769844 TCTTTCCATCAGACAGACCTACC 59.230 47.826 0.00 0.00 0.00 3.18
1590 1610 5.606348 ATCTTTCCATCAGACAGACCTAC 57.394 43.478 0.00 0.00 34.15 3.18
1592 1612 5.495640 GAAATCTTTCCATCAGACAGACCT 58.504 41.667 0.00 0.00 34.15 3.85
1593 1613 5.809719 GAAATCTTTCCATCAGACAGACC 57.190 43.478 0.00 0.00 34.15 3.85
1642 1662 2.035832 AGCAACAACAAAGGGCATACAC 59.964 45.455 0.00 0.00 0.00 2.90
1661 1681 1.405661 GGGTGCAGTAAGACCTACAGC 60.406 57.143 0.00 0.00 41.99 4.40
1770 1790 9.334947 GGGTCCCTACTTAACATTATTTCTAAC 57.665 37.037 0.00 0.00 0.00 2.34
1843 1863 5.134725 AGATGCCAAAGGAGTGGATTAAT 57.865 39.130 0.00 0.00 41.65 1.40
1883 1903 8.354711 TGTAGTAATTGCCAATTTAACCATGA 57.645 30.769 8.15 0.00 32.38 3.07
1897 1917 7.063308 CCAACCAATGAACAATGTAGTAATTGC 59.937 37.037 0.00 0.00 40.54 3.56
1937 1957 7.360607 CGGTCCAAAATATCGTTTCTAAACTGT 60.361 37.037 4.24 0.00 36.77 3.55
2005 2026 7.093858 GGCTGGAAGTAGAGTCTTAAGTCTTAA 60.094 40.741 0.00 4.97 36.55 1.85
2006 2027 6.377712 GGCTGGAAGTAGAGTCTTAAGTCTTA 59.622 42.308 0.00 0.00 36.55 2.10
2007 2028 5.186215 GGCTGGAAGTAGAGTCTTAAGTCTT 59.814 44.000 0.00 0.00 36.55 3.01
2008 2029 4.707934 GGCTGGAAGTAGAGTCTTAAGTCT 59.292 45.833 0.00 1.61 38.72 3.24
2009 2030 4.463186 TGGCTGGAAGTAGAGTCTTAAGTC 59.537 45.833 0.00 0.00 35.30 3.01
2010 2031 4.417437 TGGCTGGAAGTAGAGTCTTAAGT 58.583 43.478 0.00 0.00 35.30 2.24
2011 2032 5.606348 ATGGCTGGAAGTAGAGTCTTAAG 57.394 43.478 0.00 0.00 35.30 1.85
2095 2116 4.814234 GGTCATATATTGTGCGTTTCTGGA 59.186 41.667 0.00 0.00 0.00 3.86
2364 2385 1.168714 GAACCCTCTGCAAATCGCTT 58.831 50.000 0.00 0.00 43.06 4.68
2365 2386 0.326264 AGAACCCTCTGCAAATCGCT 59.674 50.000 0.00 0.00 43.06 4.93
2434 2455 0.886490 CGCAAGGGTCACTGAAAGCT 60.886 55.000 0.00 0.00 37.60 3.74
2471 2492 6.458210 TCTTGAGATTTTCATCTTTTTGGCC 58.542 36.000 0.00 0.00 40.14 5.36
2560 2582 3.179443 ACATACCGCGATTTCTCACAT 57.821 42.857 8.23 0.00 0.00 3.21
2672 2694 0.823356 GTGGACACACACAGCCCATT 60.823 55.000 0.00 0.00 46.90 3.16
2682 2704 4.662968 TGTCACAACAACAGTGGACACAC 61.663 47.826 5.14 0.00 39.12 3.82
2683 2705 2.080693 GTCACAACAACAGTGGACACA 58.919 47.619 5.14 0.00 37.58 3.72
2731 2753 4.143986 TGTCACAACAATAGTGGACACA 57.856 40.909 5.14 0.00 37.58 3.72
3088 3110 9.419297 GTATCAGTGTACAAGTAAAACTCATGA 57.581 33.333 0.00 0.00 0.00 3.07
3167 3189 7.393234 CCCACCTATGTGAAGAATAAAAAGTCA 59.607 37.037 0.00 0.00 45.76 3.41
3185 3207 3.784202 AGTTATCCGTTTTCCCCACCTAT 59.216 43.478 0.00 0.00 0.00 2.57
3306 3384 9.647797 CATAAGTGTTAACTATTGTCACCACTA 57.352 33.333 7.22 0.00 34.77 2.74
3372 3450 7.209475 ACTATAACAACAGCACTTGCATTTTT 58.791 30.769 3.62 0.23 45.16 1.94
3386 3464 6.542005 CCCATGCAGAACATACTATAACAACA 59.458 38.462 0.00 0.00 36.64 3.33
3581 3662 4.829492 CCAACTGGAAAAAGATCAGAAGGT 59.171 41.667 0.00 0.00 37.39 3.50
3754 3851 3.165606 GCAGCCTGCACTGTAGAAT 57.834 52.632 12.82 0.00 44.26 2.40
3830 3938 5.047802 GTGGAAATGACAACCATGAAGACAT 60.048 40.000 0.00 0.00 35.24 3.06
4261 4428 0.899019 TGCACGGTATAGCCAGTCAA 59.101 50.000 0.00 0.00 36.97 3.18
4311 4478 6.350445 GGTGGATTACCGAGTTAACTTGTCTA 60.350 42.308 19.41 7.44 40.26 2.59
4313 4480 4.628766 GGTGGATTACCGAGTTAACTTGTC 59.371 45.833 19.41 11.18 40.26 3.18
4390 4557 2.356135 GCGCAGATTTCCCTTCTTACA 58.644 47.619 0.30 0.00 0.00 2.41
4572 4739 2.230992 CCAATTCCGCTCATTGTCCAAA 59.769 45.455 0.00 0.00 30.73 3.28
4574 4741 1.271871 ACCAATTCCGCTCATTGTCCA 60.272 47.619 0.00 0.00 30.73 4.02
4735 4905 0.843309 TGGACTCAAACCTTCCTGCA 59.157 50.000 0.00 0.00 0.00 4.41
4744 4930 6.643770 TCTGTATAACGTTTCTGGACTCAAAC 59.356 38.462 5.91 0.00 0.00 2.93
4745 4931 6.751157 TCTGTATAACGTTTCTGGACTCAAA 58.249 36.000 5.91 0.00 0.00 2.69
4746 4932 6.335471 TCTGTATAACGTTTCTGGACTCAA 57.665 37.500 5.91 0.00 0.00 3.02
4747 4933 5.970317 TCTGTATAACGTTTCTGGACTCA 57.030 39.130 5.91 0.00 0.00 3.41
4748 4934 7.829378 AAATCTGTATAACGTTTCTGGACTC 57.171 36.000 5.91 0.00 0.00 3.36
4749 4935 7.660208 ACAAAATCTGTATAACGTTTCTGGACT 59.340 33.333 5.91 0.00 36.10 3.85
4750 4936 7.803724 ACAAAATCTGTATAACGTTTCTGGAC 58.196 34.615 5.91 0.00 36.10 4.02
4751 4937 7.118680 GGACAAAATCTGTATAACGTTTCTGGA 59.881 37.037 5.91 0.00 38.84 3.86
4752 4938 7.241376 GGACAAAATCTGTATAACGTTTCTGG 58.759 38.462 5.91 0.00 38.84 3.86
4753 4939 7.241376 GGGACAAAATCTGTATAACGTTTCTG 58.759 38.462 5.91 2.51 38.84 3.02
4754 4940 6.373495 GGGGACAAAATCTGTATAACGTTTCT 59.627 38.462 5.91 0.00 38.84 2.52
4755 4941 6.373495 AGGGGACAAAATCTGTATAACGTTTC 59.627 38.462 5.91 0.00 38.84 2.78
4756 4942 6.150474 CAGGGGACAAAATCTGTATAACGTTT 59.850 38.462 5.91 0.00 38.84 3.60
4757 4943 5.646360 CAGGGGACAAAATCTGTATAACGTT 59.354 40.000 5.88 5.88 38.84 3.99
4758 4944 5.183228 CAGGGGACAAAATCTGTATAACGT 58.817 41.667 0.00 0.00 38.84 3.99
4759 4945 5.183228 ACAGGGGACAAAATCTGTATAACG 58.817 41.667 0.00 0.00 38.84 3.18
4783 4969 2.236146 ACAGCGGAATTATCCTGACACA 59.764 45.455 0.00 0.00 44.17 3.72
4896 5084 2.208431 GAGAATGCATCAGACTTCCCG 58.792 52.381 0.00 0.00 0.00 5.14
4907 5095 6.097839 AGCATAAATTGGTTCTGAGAATGCAT 59.902 34.615 13.50 0.00 39.63 3.96
4953 5143 9.407380 CTGTGCTCTATATAATAGAGATGGTCT 57.593 37.037 22.31 0.00 42.68 3.85
4960 5150 8.588290 ACTTCCCTGTGCTCTATATAATAGAG 57.412 38.462 16.31 16.31 42.87 2.43
4961 5151 8.394822 AGACTTCCCTGTGCTCTATATAATAGA 58.605 37.037 0.00 0.00 0.00 1.98
4968 5158 3.052869 TCCAGACTTCCCTGTGCTCTATA 60.053 47.826 0.00 0.00 32.43 1.31
4997 5189 0.601841 CGTTGGACACGCCCTTACTT 60.602 55.000 0.00 0.00 43.37 2.24
5009 5201 3.543460 CGTTTTGAGAGTCAACGTTGGAC 60.543 47.826 27.02 21.59 35.89 4.02
5018 5210 0.179234 TGTGGGCGTTTTGAGAGTCA 59.821 50.000 0.00 0.00 0.00 3.41
5032 5224 1.355720 ACTCAAAGGGGAGAATGTGGG 59.644 52.381 0.00 0.00 38.30 4.61
5034 5226 3.423539 TCACTCAAAGGGGAGAATGTG 57.576 47.619 0.00 0.00 38.30 3.21
5035 5227 4.453480 TTTCACTCAAAGGGGAGAATGT 57.547 40.909 0.00 0.00 38.30 2.71
5039 5231 4.453480 ACAATTTCACTCAAAGGGGAGA 57.547 40.909 0.00 0.00 38.30 3.71
5040 5232 4.156739 GCTACAATTTCACTCAAAGGGGAG 59.843 45.833 0.00 0.00 40.79 4.30
5041 5233 4.079253 GCTACAATTTCACTCAAAGGGGA 58.921 43.478 0.00 0.00 0.00 4.81
5042 5234 3.826157 TGCTACAATTTCACTCAAAGGGG 59.174 43.478 0.00 0.00 0.00 4.79
5044 5236 5.947228 TCTGCTACAATTTCACTCAAAGG 57.053 39.130 0.00 0.00 0.00 3.11
5045 5237 7.194607 TCTTCTGCTACAATTTCACTCAAAG 57.805 36.000 0.00 0.00 0.00 2.77
5046 5238 7.566760 TTCTTCTGCTACAATTTCACTCAAA 57.433 32.000 0.00 0.00 0.00 2.69
5047 5239 7.255242 CCTTTCTTCTGCTACAATTTCACTCAA 60.255 37.037 0.00 0.00 0.00 3.02
5048 5240 6.205464 CCTTTCTTCTGCTACAATTTCACTCA 59.795 38.462 0.00 0.00 0.00 3.41
5050 5242 6.299141 TCCTTTCTTCTGCTACAATTTCACT 58.701 36.000 0.00 0.00 0.00 3.41
5053 5245 9.133627 GATTTTCCTTTCTTCTGCTACAATTTC 57.866 33.333 0.00 0.00 0.00 2.17
5054 5246 8.090831 GGATTTTCCTTTCTTCTGCTACAATTT 58.909 33.333 0.00 0.00 32.53 1.82
5057 5294 6.068010 TGGATTTTCCTTTCTTCTGCTACAA 58.932 36.000 0.00 0.00 37.46 2.41
5060 5297 5.653769 CCATGGATTTTCCTTTCTTCTGCTA 59.346 40.000 5.56 0.00 37.46 3.49
5063 5300 5.392380 CGTCCATGGATTTTCCTTTCTTCTG 60.392 44.000 19.62 0.00 37.46 3.02
5065 5302 4.700213 TCGTCCATGGATTTTCCTTTCTTC 59.300 41.667 19.62 0.00 37.46 2.87
5069 5306 2.755103 GCTCGTCCATGGATTTTCCTTT 59.245 45.455 19.62 0.00 37.46 3.11
5087 5324 2.435059 GTTCAGGTGGAGCGGCTC 60.435 66.667 21.57 21.57 0.00 4.70
5088 5325 4.379243 CGTTCAGGTGGAGCGGCT 62.379 66.667 0.00 0.00 45.20 5.52
5092 5329 0.946221 CAGACACGTTCAGGTGGAGC 60.946 60.000 4.76 0.00 42.23 4.70
5093 5330 0.673985 TCAGACACGTTCAGGTGGAG 59.326 55.000 4.76 0.00 42.23 3.86
5094 5331 1.116308 TTCAGACACGTTCAGGTGGA 58.884 50.000 4.76 0.00 42.23 4.02
5095 5332 2.169832 ATTCAGACACGTTCAGGTGG 57.830 50.000 4.76 0.00 42.23 4.61
5096 5333 2.480419 GGAATTCAGACACGTTCAGGTG 59.520 50.000 7.93 0.00 43.54 4.00
5097 5334 2.104111 TGGAATTCAGACACGTTCAGGT 59.896 45.455 7.93 0.00 0.00 4.00
5100 5337 4.387559 CGTATTGGAATTCAGACACGTTCA 59.612 41.667 7.93 0.00 0.00 3.18
5104 5341 3.259064 ACCGTATTGGAATTCAGACACG 58.741 45.455 7.93 10.65 42.00 4.49
5107 5344 3.377172 CCCAACCGTATTGGAATTCAGAC 59.623 47.826 15.48 0.00 42.06 3.51
5108 5345 3.616219 CCCAACCGTATTGGAATTCAGA 58.384 45.455 15.48 0.00 42.06 3.27
5113 5350 0.333312 TGGCCCAACCGTATTGGAAT 59.667 50.000 15.48 0.00 43.94 3.01
5119 5356 2.815158 AGAAAAATGGCCCAACCGTAT 58.185 42.857 0.00 0.00 43.94 3.06
5124 5361 4.058124 GAGTGAAAGAAAAATGGCCCAAC 58.942 43.478 0.00 0.00 0.00 3.77
5126 5363 2.632512 GGAGTGAAAGAAAAATGGCCCA 59.367 45.455 0.00 0.00 0.00 5.36
5127 5364 2.352715 CGGAGTGAAAGAAAAATGGCCC 60.353 50.000 0.00 0.00 0.00 5.80
5152 5389 4.704057 GGATTCTGAGCAAGGAAGAAACAT 59.296 41.667 0.00 0.00 33.86 2.71
5160 5397 0.543277 ATGCGGATTCTGAGCAAGGA 59.457 50.000 0.00 0.00 44.51 3.36
5161 5398 0.942962 GATGCGGATTCTGAGCAAGG 59.057 55.000 0.00 0.00 44.51 3.61
5162 5399 0.942962 GGATGCGGATTCTGAGCAAG 59.057 55.000 0.00 0.00 44.51 4.01
5168 5405 0.467384 ACAGGAGGATGCGGATTCTG 59.533 55.000 0.79 5.78 0.00 3.02
5171 5408 0.982852 TCCACAGGAGGATGCGGATT 60.983 55.000 0.00 0.00 31.23 3.01
5191 5428 0.390603 CTTTCGGACGTATGTGGGCA 60.391 55.000 0.00 0.00 0.00 5.36
5192 5429 0.390735 ACTTTCGGACGTATGTGGGC 60.391 55.000 0.00 0.00 0.00 5.36
5193 5430 1.337447 ACACTTTCGGACGTATGTGGG 60.337 52.381 16.97 0.00 0.00 4.61
5195 5432 1.990563 GGACACTTTCGGACGTATGTG 59.009 52.381 13.09 13.09 0.00 3.21
5196 5433 1.614903 TGGACACTTTCGGACGTATGT 59.385 47.619 0.00 0.00 0.00 2.29
5197 5434 2.357327 TGGACACTTTCGGACGTATG 57.643 50.000 0.00 0.00 0.00 2.39
5198 5435 3.604875 ATTGGACACTTTCGGACGTAT 57.395 42.857 0.00 0.00 0.00 3.06
5200 5437 3.259064 CATATTGGACACTTTCGGACGT 58.741 45.455 0.00 0.00 0.00 4.34
5202 5439 4.969816 CAACATATTGGACACTTTCGGAC 58.030 43.478 0.00 0.00 31.63 4.79
5220 5492 3.454082 AGTGAAAGAAAAATGGCCCAACA 59.546 39.130 0.00 0.00 0.00 3.33
5242 5514 0.042731 AAGGGAGAATCAGGGACGGA 59.957 55.000 0.00 0.00 36.25 4.69
5244 5516 0.462759 GCAAGGGAGAATCAGGGACG 60.463 60.000 0.00 0.00 36.25 4.79
5252 5524 1.845143 AGATGCTGAGCAAGGGAGAAT 59.155 47.619 12.69 0.00 43.62 2.40
5260 5532 0.255033 AGGATGCAGATGCTGAGCAA 59.745 50.000 12.69 0.00 43.62 3.91
5272 5544 3.645212 CCAAAGAGATAGAGGAGGATGCA 59.355 47.826 0.00 0.00 0.00 3.96
5300 5572 1.682005 CATCCAACAATGCCCGGGT 60.682 57.895 24.63 0.00 0.00 5.28
5303 5575 0.452987 CAGACATCCAACAATGCCCG 59.547 55.000 0.00 0.00 0.00 6.13
5304 5576 0.174162 GCAGACATCCAACAATGCCC 59.826 55.000 0.00 0.00 0.00 5.36
5311 5583 1.197721 CAAAGTCCGCAGACATCCAAC 59.802 52.381 2.32 0.00 46.15 3.77
5316 5588 1.676014 GCCTACAAAGTCCGCAGACAT 60.676 52.381 2.32 0.00 46.15 3.06
5317 5589 0.320421 GCCTACAAAGTCCGCAGACA 60.320 55.000 2.32 0.00 46.15 3.41
5323 5595 1.656652 CCTCATGCCTACAAAGTCCG 58.343 55.000 0.00 0.00 0.00 4.79
5325 5597 2.113860 TGCCTCATGCCTACAAAGTC 57.886 50.000 0.00 0.00 40.16 3.01
5337 5609 2.240918 TTGAGCCCCCTTGCCTCAT 61.241 57.895 0.00 0.00 0.00 2.90
5350 5622 4.260743 GCATGTTTTTCCAAAAGGTTGAGC 60.261 41.667 0.00 0.00 36.83 4.26
5407 5680 2.488937 TGGATCACGTGCTAAGTCGTAA 59.511 45.455 11.67 0.00 38.52 3.18
5416 5689 1.361668 GCGTTCATGGATCACGTGCT 61.362 55.000 11.67 0.00 36.29 4.40
5423 5696 3.127548 ACTTCACATTGCGTTCATGGATC 59.872 43.478 0.00 0.00 0.00 3.36
5458 5731 4.465632 TGTGTAATCTACTGCGACCATT 57.534 40.909 0.00 0.00 0.00 3.16
5464 5737 3.845178 TCCACTTGTGTAATCTACTGCG 58.155 45.455 0.00 0.00 0.00 5.18
5467 5740 7.233757 ACTTTCTCTCCACTTGTGTAATCTACT 59.766 37.037 0.00 0.00 0.00 2.57
5495 5768 1.303643 GGTTGAAGAGCCTGGTGGG 60.304 63.158 0.00 0.00 38.36 4.61
5560 5833 6.093357 TCGAGTTGCAATATTTAGTGAATGCA 59.907 34.615 0.59 0.00 0.00 3.96
5561 5834 6.486248 TCGAGTTGCAATATTTAGTGAATGC 58.514 36.000 0.59 0.00 0.00 3.56
5568 5841 8.230486 GGGTGATTATCGAGTTGCAATATTTAG 58.770 37.037 0.59 0.00 0.00 1.85
5574 5847 3.214328 GGGGTGATTATCGAGTTGCAAT 58.786 45.455 0.59 0.00 0.00 3.56
5592 5865 1.202651 CGTCCAAGCTATACAAGGGGG 60.203 57.143 0.00 0.00 0.00 5.40
5607 5880 4.678499 TGCATGACAGCGCGTCCA 62.678 61.111 23.01 13.72 44.71 4.02
5612 5885 1.741401 TGGTAGTGCATGACAGCGC 60.741 57.895 0.00 0.00 45.04 5.92
5613 5886 0.670239 TGTGGTAGTGCATGACAGCG 60.670 55.000 0.00 0.00 37.31 5.18
5614 5887 1.081892 CTGTGGTAGTGCATGACAGC 58.918 55.000 0.00 0.00 0.00 4.40
5615 5888 2.738846 GTTCTGTGGTAGTGCATGACAG 59.261 50.000 0.00 0.00 36.23 3.51
5616 5889 2.368548 AGTTCTGTGGTAGTGCATGACA 59.631 45.455 0.00 0.00 0.00 3.58
5617 5890 3.045601 AGTTCTGTGGTAGTGCATGAC 57.954 47.619 0.00 0.00 0.00 3.06
5618 5891 4.322725 CCTTAGTTCTGTGGTAGTGCATGA 60.323 45.833 0.00 0.00 0.00 3.07
5619 5892 3.935203 CCTTAGTTCTGTGGTAGTGCATG 59.065 47.826 0.00 0.00 0.00 4.06
5620 5893 3.055094 CCCTTAGTTCTGTGGTAGTGCAT 60.055 47.826 0.00 0.00 0.00 3.96
5621 5894 2.301870 CCCTTAGTTCTGTGGTAGTGCA 59.698 50.000 0.00 0.00 0.00 4.57
5622 5895 2.935676 GCCCTTAGTTCTGTGGTAGTGC 60.936 54.545 0.00 0.00 0.00 4.40
5623 5896 2.567615 AGCCCTTAGTTCTGTGGTAGTG 59.432 50.000 0.00 0.00 0.00 2.74
5624 5897 2.567615 CAGCCCTTAGTTCTGTGGTAGT 59.432 50.000 0.00 0.00 0.00 2.73
5625 5898 2.093447 CCAGCCCTTAGTTCTGTGGTAG 60.093 54.545 0.00 0.00 0.00 3.18
5626 5899 1.906574 CCAGCCCTTAGTTCTGTGGTA 59.093 52.381 0.00 0.00 0.00 3.25
5627 5900 0.693049 CCAGCCCTTAGTTCTGTGGT 59.307 55.000 0.00 0.00 0.00 4.16
5628 5901 0.678048 GCCAGCCCTTAGTTCTGTGG 60.678 60.000 0.00 0.00 0.00 4.17
5629 5902 0.036732 TGCCAGCCCTTAGTTCTGTG 59.963 55.000 0.00 0.00 0.00 3.66
5630 5903 0.771127 TTGCCAGCCCTTAGTTCTGT 59.229 50.000 0.00 0.00 0.00 3.41
5631 5904 2.134789 ATTGCCAGCCCTTAGTTCTG 57.865 50.000 0.00 0.00 0.00 3.02
5632 5905 2.907458 AATTGCCAGCCCTTAGTTCT 57.093 45.000 0.00 0.00 0.00 3.01
5633 5906 3.761752 TGTAAATTGCCAGCCCTTAGTTC 59.238 43.478 0.00 0.00 0.00 3.01
5634 5907 3.773560 TGTAAATTGCCAGCCCTTAGTT 58.226 40.909 0.00 0.00 0.00 2.24
5635 5908 3.449746 TGTAAATTGCCAGCCCTTAGT 57.550 42.857 0.00 0.00 0.00 2.24
5636 5909 4.402155 TGAATGTAAATTGCCAGCCCTTAG 59.598 41.667 0.00 0.00 0.00 2.18
5637 5910 4.348486 TGAATGTAAATTGCCAGCCCTTA 58.652 39.130 0.00 0.00 0.00 2.69
5638 5911 3.172339 TGAATGTAAATTGCCAGCCCTT 58.828 40.909 0.00 0.00 0.00 3.95
5639 5912 2.818921 TGAATGTAAATTGCCAGCCCT 58.181 42.857 0.00 0.00 0.00 5.19
5640 5913 3.825143 ATGAATGTAAATTGCCAGCCC 57.175 42.857 0.00 0.00 0.00 5.19
5641 5914 5.261209 TGTATGAATGTAAATTGCCAGCC 57.739 39.130 0.00 0.00 0.00 4.85
5642 5915 6.757947 ACAATGTATGAATGTAAATTGCCAGC 59.242 34.615 0.00 0.00 34.16 4.85
5643 5916 8.706492 AACAATGTATGAATGTAAATTGCCAG 57.294 30.769 0.00 0.00 34.16 4.85
5644 5917 8.933807 CAAACAATGTATGAATGTAAATTGCCA 58.066 29.630 0.00 0.00 34.16 4.92
5645 5918 9.149225 TCAAACAATGTATGAATGTAAATTGCC 57.851 29.630 0.00 0.00 34.16 4.52
5653 5926 9.985730 AAGTTTCATCAAACAATGTATGAATGT 57.014 25.926 9.92 0.64 43.98 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.