Multiple sequence alignment - TraesCS3A01G161100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G161100 chr3A 100.000 2409 0 0 1 2409 162751691 162754099 0.000000e+00 4449.0
1 TraesCS3A01G161100 chr3A 88.041 393 36 6 4 389 166923895 166923507 2.820000e-124 455.0
2 TraesCS3A01G161100 chr3A 91.129 124 11 0 1778 1901 46169097 46169220 4.120000e-38 169.0
3 TraesCS3A01G161100 chr3D 90.148 1482 79 29 1 1458 142997710 142999148 0.000000e+00 1866.0
4 TraesCS3A01G161100 chr3D 87.023 393 40 6 4 389 149205537 149205149 1.320000e-117 433.0
5 TraesCS3A01G161100 chr3D 86.768 393 41 5 4 389 141411063 141410675 6.150000e-116 427.0
6 TraesCS3A01G161100 chr3D 86.768 393 41 6 4 389 149544698 149544310 6.150000e-116 427.0
7 TraesCS3A01G161100 chr3D 86.667 390 41 6 4 386 149769495 149769880 2.860000e-114 422.0
8 TraesCS3A01G161100 chr3D 83.299 479 55 11 1 460 360691947 360691475 3.700000e-113 418.0
9 TraesCS3A01G161100 chr3D 86.260 393 43 6 1 386 147335562 147335950 1.330000e-112 416.0
10 TraesCS3A01G161100 chr3D 79.000 100 17 4 2252 2349 481229327 481229424 5.560000e-07 65.8
11 TraesCS3A01G161100 chr3D 90.000 50 5 0 2261 2310 490848211 490848260 5.560000e-07 65.8
12 TraesCS3A01G161100 chr3B 89.209 1492 87 28 1 1458 204847822 204849273 0.000000e+00 1796.0
13 TraesCS3A01G161100 chr3B 84.483 522 63 8 1888 2406 204849636 204850142 1.290000e-137 499.0
14 TraesCS3A01G161100 chr3B 87.277 393 39 6 4 389 221912933 221912545 2.840000e-119 438.0
15 TraesCS3A01G161100 chr3B 86.768 393 41 6 4 389 215105253 215104865 6.150000e-116 427.0
16 TraesCS3A01G161100 chr3B 87.080 387 39 6 10 389 215572573 215572191 6.150000e-116 427.0
17 TraesCS3A01G161100 chr3B 86.768 393 41 6 4 389 221980413 221980025 6.150000e-116 427.0
18 TraesCS3A01G161100 chr3B 90.968 155 6 5 1580 1728 204849279 204849431 4.060000e-48 202.0
19 TraesCS3A01G161100 chr3B 94.545 110 6 0 1780 1889 12156969 12156860 1.150000e-38 171.0
20 TraesCS3A01G161100 chr3B 92.857 42 3 0 2246 2287 650657531 650657572 7.190000e-06 62.1
21 TraesCS3A01G161100 chr6A 84.224 393 51 5 1 386 146441148 146441536 2.920000e-99 372.0
22 TraesCS3A01G161100 chr6A 91.270 126 10 1 1781 1905 475435055 475435180 1.150000e-38 171.0
23 TraesCS3A01G161100 chr6A 84.677 124 18 1 1457 1580 897746 897624 3.250000e-24 122.0
24 TraesCS3A01G161100 chr6A 81.818 121 20 2 1457 1576 537685410 537685529 1.520000e-17 100.0
25 TraesCS3A01G161100 chr2B 80.101 397 54 14 1 386 704410954 704411336 3.050000e-69 272.0
26 TraesCS3A01G161100 chr2B 87.500 120 13 1 1458 1577 290680391 290680274 1.160000e-28 137.0
27 TraesCS3A01G161100 chr2B 83.871 124 19 1 1460 1582 72818605 72818482 1.510000e-22 117.0
28 TraesCS3A01G161100 chr7D 96.262 107 4 0 1782 1888 613703785 613703679 2.460000e-40 176.0
29 TraesCS3A01G161100 chr7D 77.444 133 26 4 2046 2176 548778368 548778498 2.570000e-10 76.8
30 TraesCS3A01G161100 chr7A 93.162 117 6 2 1782 1896 622370046 622370162 1.150000e-38 171.0
31 TraesCS3A01G161100 chr7A 88.679 53 6 0 2250 2302 215182105 215182157 5.560000e-07 65.8
32 TraesCS3A01G161100 chr5B 94.545 110 6 0 1779 1888 278886989 278886880 1.150000e-38 171.0
33 TraesCS3A01G161100 chr1D 91.870 123 8 2 1778 1898 247520954 247521076 1.150000e-38 171.0
34 TraesCS3A01G161100 chr1D 93.636 110 7 0 1780 1889 386156829 386156720 5.330000e-37 165.0
35 TraesCS3A01G161100 chr2D 90.400 125 12 0 1780 1904 640202263 640202139 5.330000e-37 165.0
36 TraesCS3A01G161100 chr2D 83.178 107 18 0 1470 1576 418778240 418778134 5.480000e-17 99.0
37 TraesCS3A01G161100 chr4A 86.667 120 14 2 1458 1576 90572034 90572152 5.400000e-27 132.0
38 TraesCS3A01G161100 chr2A 82.400 125 22 0 1460 1584 516281884 516282008 2.530000e-20 110.0
39 TraesCS3A01G161100 chr2A 90.476 42 4 0 2262 2303 39724624 39724665 3.350000e-04 56.5
40 TraesCS3A01G161100 chr1B 85.714 91 13 0 1459 1549 309118260 309118350 1.970000e-16 97.1
41 TraesCS3A01G161100 chr1B 80.508 118 21 2 1460 1576 488066628 488066744 3.300000e-14 89.8
42 TraesCS3A01G161100 chr6B 73.545 189 40 7 2074 2253 623749348 623749535 2.000000e-06 63.9
43 TraesCS3A01G161100 chr6B 76.562 128 20 8 2168 2290 708768712 708768590 7.190000e-06 62.1
44 TraesCS3A01G161100 chr6B 89.362 47 5 0 2243 2289 591581899 591581945 2.590000e-05 60.2
45 TraesCS3A01G161100 chr1A 86.792 53 7 0 2251 2303 521873909 521873857 2.590000e-05 60.2
46 TraesCS3A01G161100 chr4B 96.970 33 1 0 2261 2293 664163111 664163079 3.350000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G161100 chr3A 162751691 162754099 2408 False 4449.000000 4449 100.000 1 2409 1 chr3A.!!$F2 2408
1 TraesCS3A01G161100 chr3D 142997710 142999148 1438 False 1866.000000 1866 90.148 1 1458 1 chr3D.!!$F1 1457
2 TraesCS3A01G161100 chr3B 204847822 204850142 2320 False 832.333333 1796 88.220 1 2406 3 chr3B.!!$F2 2405

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
393 411 0.526662 CGCCTCGAAGTCCACTAGTT 59.473 55.0 0.0 0.0 0.0 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2058 2249 0.032403 TGGACTTACCGGACACGTTG 59.968 55.0 9.46 0.0 42.61 4.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 1.553690 AATCCCAGTCTCCCCACGTG 61.554 60.000 9.08 9.08 0.00 4.49
127 128 3.567797 GCCGCCGCATCTCTTGTC 61.568 66.667 0.00 0.00 34.03 3.18
133 134 1.817099 CGCATCTCTTGTCCCCTGC 60.817 63.158 0.00 0.00 0.00 4.85
264 265 4.250305 GTGAGCACGGGGTGGTGT 62.250 66.667 5.06 0.00 44.55 4.16
362 370 2.131294 ATCTGTAGATCCGCGCGTCC 62.131 60.000 29.95 16.65 0.00 4.79
367 375 1.783031 TAGATCCGCGCGTCCTTCTC 61.783 60.000 29.95 14.63 0.00 2.87
393 411 0.526662 CGCCTCGAAGTCCACTAGTT 59.473 55.000 0.00 0.00 0.00 2.24
467 485 3.664495 CCATGATCGGCTCCATGC 58.336 61.111 0.00 0.00 38.95 4.06
468 486 1.072678 CCATGATCGGCTCCATGCT 59.927 57.895 0.00 0.00 42.39 3.79
474 492 3.869272 CGGCTCCATGCTGTTCGC 61.869 66.667 0.00 0.00 42.87 4.70
475 493 3.512516 GGCTCCATGCTGTTCGCC 61.513 66.667 0.00 0.00 42.39 5.54
476 494 2.747460 GCTCCATGCTGTTCGCCA 60.747 61.111 0.00 0.00 38.95 5.69
477 495 2.334946 GCTCCATGCTGTTCGCCAA 61.335 57.895 0.00 0.00 38.95 4.52
478 496 1.503542 CTCCATGCTGTTCGCCAAC 59.496 57.895 0.00 0.00 38.05 3.77
479 497 1.228094 TCCATGCTGTTCGCCAACA 60.228 52.632 0.00 0.00 40.40 3.33
480 498 0.608856 TCCATGCTGTTCGCCAACAT 60.609 50.000 0.00 0.00 41.82 2.71
481 499 1.093972 CCATGCTGTTCGCCAACATA 58.906 50.000 0.00 0.00 41.82 2.29
482 500 1.202177 CCATGCTGTTCGCCAACATAC 60.202 52.381 0.00 0.00 41.82 2.39
483 501 1.094785 ATGCTGTTCGCCAACATACC 58.905 50.000 0.00 0.00 41.82 2.73
484 502 0.958382 TGCTGTTCGCCAACATACCC 60.958 55.000 0.00 0.00 41.82 3.69
485 503 1.977594 GCTGTTCGCCAACATACCCG 61.978 60.000 0.00 0.00 41.82 5.28
486 504 1.977594 CTGTTCGCCAACATACCCGC 61.978 60.000 0.00 0.00 41.82 6.13
520 538 1.447838 GGATCGCCTCGCAAACTCA 60.448 57.895 0.00 0.00 0.00 3.41
521 539 1.424493 GGATCGCCTCGCAAACTCAG 61.424 60.000 0.00 0.00 0.00 3.35
522 540 0.737715 GATCGCCTCGCAAACTCAGT 60.738 55.000 0.00 0.00 0.00 3.41
529 547 1.005394 CGCAAACTCAGTACCGGGT 60.005 57.895 6.32 4.46 0.00 5.28
578 596 1.450669 GAAAACCAGGGCGGCGATA 60.451 57.895 12.98 0.00 39.03 2.92
582 600 4.394712 CCAGGGCGGCGATATCCC 62.395 72.222 12.98 12.27 40.36 3.85
595 613 2.353803 CGATATCCCCCTCTTAAAGCCG 60.354 54.545 0.00 0.00 0.00 5.52
618 636 0.865769 CACCGGAGCAAACACTGTAC 59.134 55.000 9.46 0.00 0.00 2.90
645 668 4.028383 CGAAATCGGATTCATTTTCGTGG 58.972 43.478 12.74 0.00 43.14 4.94
753 778 3.320541 CCAAAACATACCAAAGGCTGTGA 59.679 43.478 6.16 0.00 0.00 3.58
762 787 2.424842 AAAGGCTGTGATTGGCGGGA 62.425 55.000 0.00 0.00 35.01 5.14
767 792 1.669795 GCTGTGATTGGCGGGAAAAAG 60.670 52.381 0.00 0.00 0.00 2.27
801 826 3.656045 CGCTGCCCGTTCGGTTTT 61.656 61.111 10.36 0.00 0.00 2.43
804 829 3.872409 CTGCCCGTTCGGTTTTGCG 62.872 63.158 10.36 0.00 0.00 4.85
883 910 2.475111 TCGAGTTCAATTCACAGCGTTC 59.525 45.455 0.00 0.00 0.00 3.95
914 941 1.002142 GTTTGGTTTCTCGGTTTCGGG 60.002 52.381 0.00 0.00 38.44 5.14
927 955 1.471287 GTTTCGGGCATAGTTCCAACC 59.529 52.381 0.00 0.00 0.00 3.77
1016 1044 4.626081 GATGGGGGCGGACGATGG 62.626 72.222 0.00 0.00 0.00 3.51
1184 1212 3.224324 CTCATGCATGCCAGCCCC 61.224 66.667 22.25 0.00 0.00 5.80
1186 1214 2.842462 CATGCATGCCAGCCCCAT 60.842 61.111 14.93 0.00 0.00 4.00
1214 1242 1.068610 GTGCTTGCGACATTGGCTTAA 60.069 47.619 0.00 0.00 0.00 1.85
1239 1267 0.519077 GGTTTCTCTGCTTCGGCTTG 59.481 55.000 0.00 0.00 42.37 4.01
1241 1269 1.604278 GTTTCTCTGCTTCGGCTTGTT 59.396 47.619 0.00 0.00 42.37 2.83
1242 1270 2.806244 GTTTCTCTGCTTCGGCTTGTTA 59.194 45.455 0.00 0.00 42.37 2.41
1243 1271 2.370281 TCTCTGCTTCGGCTTGTTAG 57.630 50.000 0.00 0.00 42.37 2.34
1260 1293 8.926180 GCTTGTTAGCATAACGTGAGTGTGTG 62.926 46.154 0.00 0.00 45.96 3.82
1270 1303 2.120232 GTGAGTGTGTGTCTGAACTCG 58.880 52.381 2.93 0.00 41.58 4.18
1422 1456 2.420547 CCTGCTAGGCTGCTCAATTGTA 60.421 50.000 5.13 0.00 0.00 2.41
1429 1463 3.008375 AGGCTGCTCAATTGTACTTCTGA 59.992 43.478 5.13 0.00 0.00 3.27
1458 1495 7.760131 AATGTTGTCATCTTGTTTTCAGTTG 57.240 32.000 0.00 0.00 32.56 3.16
1461 1498 7.247728 TGTTGTCATCTTGTTTTCAGTTGTAC 58.752 34.615 0.00 0.00 0.00 2.90
1462 1499 7.120579 TGTTGTCATCTTGTTTTCAGTTGTACT 59.879 33.333 0.00 0.00 0.00 2.73
1463 1500 7.246674 TGTCATCTTGTTTTCAGTTGTACTC 57.753 36.000 0.00 0.00 0.00 2.59
1464 1501 6.260050 TGTCATCTTGTTTTCAGTTGTACTCC 59.740 38.462 0.00 0.00 0.00 3.85
1465 1502 5.763204 TCATCTTGTTTTCAGTTGTACTCCC 59.237 40.000 0.00 0.00 0.00 4.30
1466 1503 5.367945 TCTTGTTTTCAGTTGTACTCCCT 57.632 39.130 0.00 0.00 0.00 4.20
1467 1504 5.365619 TCTTGTTTTCAGTTGTACTCCCTC 58.634 41.667 0.00 0.00 0.00 4.30
1468 1505 4.081322 TGTTTTCAGTTGTACTCCCTCC 57.919 45.455 0.00 0.00 0.00 4.30
1469 1506 3.064931 GTTTTCAGTTGTACTCCCTCCG 58.935 50.000 0.00 0.00 0.00 4.63
1470 1507 2.005370 TTCAGTTGTACTCCCTCCGT 57.995 50.000 0.00 0.00 0.00 4.69
1471 1508 1.542492 TCAGTTGTACTCCCTCCGTC 58.458 55.000 0.00 0.00 0.00 4.79
1472 1509 1.075050 TCAGTTGTACTCCCTCCGTCT 59.925 52.381 0.00 0.00 0.00 4.18
1473 1510 1.202582 CAGTTGTACTCCCTCCGTCTG 59.797 57.143 0.00 0.00 0.00 3.51
1474 1511 1.075050 AGTTGTACTCCCTCCGTCTGA 59.925 52.381 0.00 0.00 0.00 3.27
1475 1512 1.891150 GTTGTACTCCCTCCGTCTGAA 59.109 52.381 0.00 0.00 0.00 3.02
1476 1513 2.297698 TGTACTCCCTCCGTCTGAAA 57.702 50.000 0.00 0.00 0.00 2.69
1477 1514 2.816411 TGTACTCCCTCCGTCTGAAAT 58.184 47.619 0.00 0.00 0.00 2.17
1478 1515 3.170717 TGTACTCCCTCCGTCTGAAATT 58.829 45.455 0.00 0.00 0.00 1.82
1479 1516 4.346730 TGTACTCCCTCCGTCTGAAATTA 58.653 43.478 0.00 0.00 0.00 1.40
1480 1517 3.889520 ACTCCCTCCGTCTGAAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
1481 1518 3.442076 ACTCCCTCCGTCTGAAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
1482 1519 3.838903 ACTCCCTCCGTCTGAAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
1483 1520 4.184629 CTCCCTCCGTCTGAAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
1484 1521 3.581332 TCCCTCCGTCTGAAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
1485 1522 3.933332 CCCTCCGTCTGAAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
1486 1523 4.562757 CCCTCCGTCTGAAATTACTTGTCA 60.563 45.833 0.00 0.00 0.00 3.58
1487 1524 5.178797 CCTCCGTCTGAAATTACTTGTCAT 58.821 41.667 0.00 0.00 0.00 3.06
1488 1525 6.338146 CCTCCGTCTGAAATTACTTGTCATA 58.662 40.000 0.00 0.00 0.00 2.15
1489 1526 6.477033 CCTCCGTCTGAAATTACTTGTCATAG 59.523 42.308 0.00 0.00 0.00 2.23
1490 1527 7.165460 TCCGTCTGAAATTACTTGTCATAGA 57.835 36.000 0.00 0.00 0.00 1.98
1491 1528 7.608153 TCCGTCTGAAATTACTTGTCATAGAA 58.392 34.615 0.00 0.00 0.00 2.10
1492 1529 8.092068 TCCGTCTGAAATTACTTGTCATAGAAA 58.908 33.333 0.00 0.00 0.00 2.52
1493 1530 8.883731 CCGTCTGAAATTACTTGTCATAGAAAT 58.116 33.333 0.00 0.00 0.00 2.17
1530 1567 9.988815 AGATGTATCTAGAATTAAAATGCGTCT 57.011 29.630 0.00 0.00 34.85 4.18
1568 1605 9.504708 TTTTTATTGTAAGTATTTCCGGACAGA 57.495 29.630 1.83 0.00 0.00 3.41
1569 1606 8.712285 TTTATTGTAAGTATTTCCGGACAGAG 57.288 34.615 1.83 0.00 0.00 3.35
1570 1607 4.730949 TGTAAGTATTTCCGGACAGAGG 57.269 45.455 1.83 0.00 0.00 3.69
1571 1608 3.449737 TGTAAGTATTTCCGGACAGAGGG 59.550 47.826 1.83 0.00 0.00 4.30
1572 1609 2.544844 AGTATTTCCGGACAGAGGGA 57.455 50.000 1.83 0.00 0.00 4.20
1573 1610 2.389715 AGTATTTCCGGACAGAGGGAG 58.610 52.381 1.83 0.00 33.01 4.30
1574 1611 2.108970 GTATTTCCGGACAGAGGGAGT 58.891 52.381 1.83 0.00 33.01 3.85
1575 1612 2.544844 ATTTCCGGACAGAGGGAGTA 57.455 50.000 1.83 0.00 33.01 2.59
1576 1613 1.848652 TTTCCGGACAGAGGGAGTAG 58.151 55.000 1.83 0.00 33.01 2.57
1577 1614 0.702902 TTCCGGACAGAGGGAGTAGT 59.297 55.000 1.83 0.00 33.01 2.73
1578 1615 0.702902 TCCGGACAGAGGGAGTAGTT 59.297 55.000 0.00 0.00 0.00 2.24
1603 1640 2.048222 TTGCTGAACGAGAGGCCG 60.048 61.111 0.00 0.00 0.00 6.13
1614 1651 1.821753 CGAGAGGCCGGAGATATGATT 59.178 52.381 5.05 0.00 0.00 2.57
1616 1653 3.594134 GAGAGGCCGGAGATATGATTTG 58.406 50.000 5.05 0.00 0.00 2.32
1617 1654 2.304180 AGAGGCCGGAGATATGATTTGG 59.696 50.000 5.05 0.00 0.00 3.28
1646 1685 1.621814 CCTTCCCACGTCTCACCTAAA 59.378 52.381 0.00 0.00 0.00 1.85
1647 1686 2.236395 CCTTCCCACGTCTCACCTAAAT 59.764 50.000 0.00 0.00 0.00 1.40
1650 1689 5.484715 CTTCCCACGTCTCACCTAAATAAA 58.515 41.667 0.00 0.00 0.00 1.40
1651 1690 4.824289 TCCCACGTCTCACCTAAATAAAC 58.176 43.478 0.00 0.00 0.00 2.01
1652 1691 3.615496 CCCACGTCTCACCTAAATAAACG 59.385 47.826 0.00 0.00 35.00 3.60
1654 1693 4.325472 CCACGTCTCACCTAAATAAACGAC 59.675 45.833 0.00 0.00 33.25 4.34
1655 1694 4.029861 CACGTCTCACCTAAATAAACGACG 59.970 45.833 0.00 0.00 45.77 5.12
1656 1695 3.001365 CGTCTCACCTAAATAAACGACGC 60.001 47.826 0.00 0.00 36.94 5.19
1657 1696 3.305361 GTCTCACCTAAATAAACGACGCC 59.695 47.826 0.00 0.00 0.00 5.68
1658 1697 2.261345 TCACCTAAATAAACGACGCCG 58.739 47.619 0.00 0.00 42.50 6.46
1691 1732 6.662616 CAAAACATGTTCTTTCTCGAGACAT 58.337 36.000 16.36 12.61 0.00 3.06
1711 1752 5.699839 ACATTTTAGGACGATGCTTTTCAC 58.300 37.500 0.00 0.00 0.00 3.18
1728 1769 1.202486 TCACGACCCTGACACAACTTC 60.202 52.381 0.00 0.00 0.00 3.01
1729 1770 0.828022 ACGACCCTGACACAACTTCA 59.172 50.000 0.00 0.00 0.00 3.02
1730 1771 1.416401 ACGACCCTGACACAACTTCAT 59.584 47.619 0.00 0.00 0.00 2.57
1731 1772 2.631062 ACGACCCTGACACAACTTCATA 59.369 45.455 0.00 0.00 0.00 2.15
1732 1773 3.260884 ACGACCCTGACACAACTTCATAT 59.739 43.478 0.00 0.00 0.00 1.78
1733 1774 3.618594 CGACCCTGACACAACTTCATATG 59.381 47.826 0.00 0.00 0.00 1.78
1734 1775 4.579869 GACCCTGACACAACTTCATATGT 58.420 43.478 1.90 0.00 0.00 2.29
1735 1776 5.623596 CGACCCTGACACAACTTCATATGTA 60.624 44.000 1.90 0.00 0.00 2.29
1736 1777 6.313519 ACCCTGACACAACTTCATATGTAT 57.686 37.500 1.90 0.00 0.00 2.29
1738 1779 6.156949 ACCCTGACACAACTTCATATGTATCT 59.843 38.462 1.90 0.00 0.00 1.98
1739 1780 6.703607 CCCTGACACAACTTCATATGTATCTC 59.296 42.308 1.90 0.00 0.00 2.75
1764 1955 9.342308 TCTTATATGAATCTGGATGGTTGAAAC 57.658 33.333 0.00 0.00 0.00 2.78
1771 1962 1.957877 TGGATGGTTGAAACGGGAAAC 59.042 47.619 0.00 0.00 0.00 2.78
1786 1977 4.317804 GGGAAACGAACGATTGTACTTC 57.682 45.455 0.14 0.00 0.00 3.01
1787 1978 3.124128 GGGAAACGAACGATTGTACTTCC 59.876 47.826 7.63 7.63 0.00 3.46
1788 1979 3.992427 GGAAACGAACGATTGTACTTCCT 59.008 43.478 8.55 0.00 0.00 3.36
1789 1980 4.091075 GGAAACGAACGATTGTACTTCCTC 59.909 45.833 8.55 0.00 0.00 3.71
1790 1981 3.227810 ACGAACGATTGTACTTCCTCC 57.772 47.619 0.14 0.00 0.00 4.30
1791 1982 2.182825 CGAACGATTGTACTTCCTCCG 58.817 52.381 0.00 0.00 0.00 4.63
1792 1983 2.415090 CGAACGATTGTACTTCCTCCGT 60.415 50.000 0.00 0.00 0.00 4.69
1793 1984 3.582780 GAACGATTGTACTTCCTCCGTT 58.417 45.455 0.00 0.00 40.72 4.44
1794 1985 3.227810 ACGATTGTACTTCCTCCGTTC 57.772 47.619 0.00 0.00 0.00 3.95
1795 1986 2.182825 CGATTGTACTTCCTCCGTTCG 58.817 52.381 0.00 0.00 0.00 3.95
1796 1987 2.537401 GATTGTACTTCCTCCGTTCGG 58.463 52.381 4.74 4.74 0.00 4.30
1797 1988 1.619654 TTGTACTTCCTCCGTTCGGA 58.380 50.000 13.34 13.34 0.00 4.55
1798 1989 1.619654 TGTACTTCCTCCGTTCGGAA 58.380 50.000 14.79 0.00 38.18 4.30
1799 1990 2.173519 TGTACTTCCTCCGTTCGGAAT 58.826 47.619 14.79 2.09 39.64 3.01
1800 1991 2.564062 TGTACTTCCTCCGTTCGGAATT 59.436 45.455 14.79 0.00 39.64 2.17
1801 1992 3.763360 TGTACTTCCTCCGTTCGGAATTA 59.237 43.478 14.79 1.22 39.64 1.40
1802 1993 4.403432 TGTACTTCCTCCGTTCGGAATTAT 59.597 41.667 14.79 3.34 39.64 1.28
1803 1994 4.482952 ACTTCCTCCGTTCGGAATTATT 57.517 40.909 14.79 0.00 39.64 1.40
1804 1995 4.840271 ACTTCCTCCGTTCGGAATTATTT 58.160 39.130 14.79 0.00 39.64 1.40
1805 1996 4.634443 ACTTCCTCCGTTCGGAATTATTTG 59.366 41.667 14.79 1.97 39.64 2.32
1806 1997 4.210724 TCCTCCGTTCGGAATTATTTGT 57.789 40.909 14.79 0.00 33.41 2.83
1807 1998 4.186159 TCCTCCGTTCGGAATTATTTGTC 58.814 43.478 14.79 0.00 33.41 3.18
1808 1999 3.000925 CCTCCGTTCGGAATTATTTGTCG 59.999 47.826 14.79 0.00 33.41 4.35
1809 2000 2.349275 TCCGTTCGGAATTATTTGTCGC 59.651 45.455 11.66 0.00 0.00 5.19
1810 2001 2.094575 CCGTTCGGAATTATTTGTCGCA 59.905 45.455 5.19 0.00 0.00 5.10
1811 2002 3.342269 CGTTCGGAATTATTTGTCGCAG 58.658 45.455 0.00 0.00 0.00 5.18
1812 2003 3.680789 GTTCGGAATTATTTGTCGCAGG 58.319 45.455 0.00 0.00 0.00 4.85
1813 2004 2.980568 TCGGAATTATTTGTCGCAGGT 58.019 42.857 0.00 0.00 0.00 4.00
1814 2005 4.126208 TCGGAATTATTTGTCGCAGGTA 57.874 40.909 0.00 0.00 0.00 3.08
1815 2006 4.699637 TCGGAATTATTTGTCGCAGGTAT 58.300 39.130 0.00 0.00 0.00 2.73
1816 2007 4.509970 TCGGAATTATTTGTCGCAGGTATG 59.490 41.667 0.00 0.00 0.00 2.39
1817 2008 4.319477 CGGAATTATTTGTCGCAGGTATGG 60.319 45.833 0.00 0.00 0.00 2.74
1818 2009 4.819630 GGAATTATTTGTCGCAGGTATGGA 59.180 41.667 0.00 0.00 0.00 3.41
1819 2010 5.473504 GGAATTATTTGTCGCAGGTATGGAT 59.526 40.000 0.00 0.00 0.00 3.41
1820 2011 5.947228 ATTATTTGTCGCAGGTATGGATG 57.053 39.130 0.00 0.00 0.00 3.51
1821 2012 2.779755 TTTGTCGCAGGTATGGATGT 57.220 45.000 0.00 0.00 0.00 3.06
1822 2013 3.897141 TTTGTCGCAGGTATGGATGTA 57.103 42.857 0.00 0.00 0.00 2.29
1823 2014 4.415881 TTTGTCGCAGGTATGGATGTAT 57.584 40.909 0.00 0.00 0.00 2.29
1824 2015 3.660501 TGTCGCAGGTATGGATGTATC 57.339 47.619 0.00 0.00 0.00 2.24
1825 2016 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
1826 2017 4.403734 TGTCGCAGGTATGGATGTATCTA 58.596 43.478 0.00 0.00 0.00 1.98
1827 2018 4.459337 TGTCGCAGGTATGGATGTATCTAG 59.541 45.833 0.00 0.00 0.00 2.43
1828 2019 4.700692 GTCGCAGGTATGGATGTATCTAGA 59.299 45.833 0.00 0.00 0.00 2.43
1829 2020 5.358442 GTCGCAGGTATGGATGTATCTAGAT 59.642 44.000 10.73 10.73 0.00 1.98
1830 2021 5.358160 TCGCAGGTATGGATGTATCTAGATG 59.642 44.000 15.79 0.00 0.00 2.90
1831 2022 5.126222 CGCAGGTATGGATGTATCTAGATGT 59.874 44.000 15.79 1.25 0.00 3.06
1832 2023 6.318900 CGCAGGTATGGATGTATCTAGATGTA 59.681 42.308 15.79 4.44 0.00 2.29
1833 2024 7.013750 CGCAGGTATGGATGTATCTAGATGTAT 59.986 40.741 15.79 9.11 0.00 2.29
1834 2025 8.700051 GCAGGTATGGATGTATCTAGATGTATT 58.300 37.037 15.79 0.00 0.00 1.89
1861 2052 7.251704 AGTTTTAGATACATCCATTTCTGCG 57.748 36.000 0.00 0.00 0.00 5.18
1862 2053 7.047891 AGTTTTAGATACATCCATTTCTGCGA 58.952 34.615 0.00 0.00 0.00 5.10
1863 2054 6.844696 TTTAGATACATCCATTTCTGCGAC 57.155 37.500 0.00 0.00 0.00 5.19
1864 2055 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
1865 2056 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
1866 2057 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
1867 2058 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
1868 2059 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
1869 2060 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
1870 2061 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
1871 2062 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
1872 2063 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
1873 2064 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
1874 2065 4.334443 CATTTCTGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
1875 2066 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
1876 2067 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
1877 2068 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
1878 2069 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
1879 2070 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
1880 2071 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
1881 2072 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
1882 2073 3.671433 CGACGAGTAATTTGGAACGGAGA 60.671 47.826 0.00 0.00 0.00 3.71
1883 2074 3.846360 ACGAGTAATTTGGAACGGAGAG 58.154 45.455 0.00 0.00 0.00 3.20
1884 2075 3.508793 ACGAGTAATTTGGAACGGAGAGA 59.491 43.478 0.00 0.00 0.00 3.10
1885 2076 4.159879 ACGAGTAATTTGGAACGGAGAGAT 59.840 41.667 0.00 0.00 0.00 2.75
1886 2077 5.109903 CGAGTAATTTGGAACGGAGAGATT 58.890 41.667 0.00 0.00 0.00 2.40
1906 2097 8.103305 AGAGATTAAAAGTTAACATGAGCTCCA 58.897 33.333 12.15 0.00 0.00 3.86
1909 2100 7.817418 TTAAAAGTTAACATGAGCTCCAGTT 57.183 32.000 20.32 20.32 0.00 3.16
1947 2138 6.183360 ACCCATTTTGCATTCTTAGCATCTAC 60.183 38.462 0.00 0.00 42.33 2.59
1948 2139 6.040166 CCCATTTTGCATTCTTAGCATCTACT 59.960 38.462 0.00 0.00 42.33 2.57
1949 2140 7.137426 CCATTTTGCATTCTTAGCATCTACTC 58.863 38.462 0.00 0.00 42.33 2.59
1950 2141 7.013083 CCATTTTGCATTCTTAGCATCTACTCT 59.987 37.037 0.00 0.00 42.33 3.24
1951 2142 6.915544 TTTGCATTCTTAGCATCTACTCTG 57.084 37.500 0.00 0.00 42.33 3.35
1953 2144 4.651045 TGCATTCTTAGCATCTACTCTGGA 59.349 41.667 0.00 0.00 37.02 3.86
1954 2145 4.987912 GCATTCTTAGCATCTACTCTGGAC 59.012 45.833 0.00 0.00 0.00 4.02
1955 2146 4.902443 TTCTTAGCATCTACTCTGGACG 57.098 45.455 0.00 0.00 0.00 4.79
1956 2147 3.887352 TCTTAGCATCTACTCTGGACGT 58.113 45.455 0.00 0.00 0.00 4.34
1957 2148 3.628032 TCTTAGCATCTACTCTGGACGTG 59.372 47.826 0.00 0.00 0.00 4.49
1958 2149 1.840737 AGCATCTACTCTGGACGTGT 58.159 50.000 0.00 0.00 0.00 4.49
1959 2150 3.000684 AGCATCTACTCTGGACGTGTA 57.999 47.619 0.00 0.00 0.00 2.90
1960 2151 2.683867 AGCATCTACTCTGGACGTGTAC 59.316 50.000 0.00 0.00 0.00 2.90
1961 2152 2.422479 GCATCTACTCTGGACGTGTACA 59.578 50.000 0.00 0.00 0.00 2.90
1962 2153 3.119602 GCATCTACTCTGGACGTGTACAA 60.120 47.826 0.00 0.00 0.00 2.41
1963 2154 4.440250 GCATCTACTCTGGACGTGTACAAT 60.440 45.833 0.00 0.00 0.00 2.71
1964 2155 4.959596 TCTACTCTGGACGTGTACAATC 57.040 45.455 0.00 0.00 0.00 2.67
1965 2156 4.586884 TCTACTCTGGACGTGTACAATCT 58.413 43.478 0.00 0.00 0.00 2.40
1988 2179 4.765339 TGACCTCTCAAACGTCTAATCAGA 59.235 41.667 0.00 0.00 0.00 3.27
2004 2195 8.450578 TCTAATCAGACAACTTGAACATTGTT 57.549 30.769 0.63 0.63 39.13 2.83
2012 2203 3.804036 ACTTGAACATTGTTCGGACAGA 58.196 40.909 21.27 3.44 37.04 3.41
2016 2207 3.996363 TGAACATTGTTCGGACAGATGAG 59.004 43.478 21.27 4.44 37.04 2.90
2017 2208 2.977914 ACATTGTTCGGACAGATGAGG 58.022 47.619 19.47 1.95 37.04 3.86
2024 2215 0.687757 CGGACAGATGAGGGGAGGAA 60.688 60.000 0.00 0.00 0.00 3.36
2026 2217 1.488393 GGACAGATGAGGGGAGGAAAG 59.512 57.143 0.00 0.00 0.00 2.62
2027 2218 1.488393 GACAGATGAGGGGAGGAAAGG 59.512 57.143 0.00 0.00 0.00 3.11
2032 2223 0.614979 TGAGGGGAGGAAAGGAGTCG 60.615 60.000 0.00 0.00 0.00 4.18
2038 2229 0.391793 GAGGAAAGGAGTCGCCCAAG 60.392 60.000 0.00 0.00 37.37 3.61
2056 2247 1.680338 AGCACAACCCTCACTTTGTC 58.320 50.000 0.00 0.00 33.59 3.18
2058 2249 1.318576 CACAACCCTCACTTTGTCCC 58.681 55.000 0.00 0.00 33.59 4.46
2059 2250 0.923358 ACAACCCTCACTTTGTCCCA 59.077 50.000 0.00 0.00 29.75 4.37
2062 2253 0.179029 ACCCTCACTTTGTCCCAACG 60.179 55.000 0.00 0.00 0.00 4.10
2068 2259 0.812412 ACTTTGTCCCAACGTGTCCG 60.812 55.000 0.00 0.00 40.83 4.79
2069 2260 1.503818 CTTTGTCCCAACGTGTCCGG 61.504 60.000 0.00 0.00 38.78 5.14
2073 2264 0.668401 GTCCCAACGTGTCCGGTAAG 60.668 60.000 0.00 0.00 38.78 2.34
2083 2274 3.143728 GTGTCCGGTAAGTCCACAAATT 58.856 45.455 0.00 0.00 35.57 1.82
2090 2281 6.328148 TCCGGTAAGTCCACAAATTCCTATAT 59.672 38.462 0.00 0.00 35.57 0.86
2091 2282 6.996282 CCGGTAAGTCCACAAATTCCTATATT 59.004 38.462 0.00 0.00 35.57 1.28
2116 2307 7.987820 TCAATTCATATGTGGGAAGGATATGA 58.012 34.615 1.90 0.00 37.32 2.15
2127 2318 3.307059 GGAAGGATATGAGGATGTTCGGG 60.307 52.174 0.00 0.00 0.00 5.14
2128 2319 1.625818 AGGATATGAGGATGTTCGGGC 59.374 52.381 0.00 0.00 0.00 6.13
2135 2326 2.514824 GATGTTCGGGCAGCCCTC 60.515 66.667 28.80 14.86 42.67 4.30
2136 2327 3.011517 ATGTTCGGGCAGCCCTCT 61.012 61.111 28.80 5.12 42.67 3.69
2159 2350 4.301027 GGATGCGGCCTACCTCGG 62.301 72.222 0.00 0.00 0.00 4.63
2165 2356 2.682494 GGCCTACCTCGGACCACA 60.682 66.667 0.00 0.00 0.00 4.17
2169 2360 1.339727 GCCTACCTCGGACCACATTTT 60.340 52.381 0.00 0.00 0.00 1.82
2170 2361 2.629051 CCTACCTCGGACCACATTTTC 58.371 52.381 0.00 0.00 0.00 2.29
2194 2388 4.643334 TCTTTCTTCATGCCCATCAATCAG 59.357 41.667 0.00 0.00 0.00 2.90
2209 2403 3.697542 TCAATCAGATGCATTTGACTGGG 59.302 43.478 23.41 13.31 0.00 4.45
2215 2409 3.262405 AGATGCATTTGACTGGGCAATTT 59.738 39.130 0.00 0.00 40.02 1.82
2218 2412 2.702261 CATTTGACTGGGCAATTTGGG 58.298 47.619 0.00 0.00 0.00 4.12
2221 2415 0.776810 TGACTGGGCAATTTGGGAGA 59.223 50.000 0.00 0.00 0.00 3.71
2222 2416 1.146774 TGACTGGGCAATTTGGGAGAA 59.853 47.619 0.00 0.00 0.00 2.87
2228 2422 2.695147 GGGCAATTTGGGAGAATGTAGG 59.305 50.000 0.00 0.00 0.00 3.18
2232 2426 3.953542 ATTTGGGAGAATGTAGGGGAC 57.046 47.619 0.00 0.00 0.00 4.46
2255 2449 5.595257 ATGGTTACATGCATGCACAAATA 57.405 34.783 25.37 10.13 35.57 1.40
2275 2469 0.935196 AAGACTCAAAACGGACACGC 59.065 50.000 0.00 0.00 46.04 5.34
2323 2517 5.127031 ACGGATGTTTGGGGATCAAAATTAG 59.873 40.000 0.00 0.00 45.74 1.73
2324 2518 5.127031 CGGATGTTTGGGGATCAAAATTAGT 59.873 40.000 0.00 0.00 45.74 2.24
2327 2521 6.588719 TGTTTGGGGATCAAAATTAGTCAG 57.411 37.500 0.00 0.00 45.74 3.51
2330 2524 4.855340 TGGGGATCAAAATTAGTCAGTCC 58.145 43.478 0.00 0.00 0.00 3.85
2333 2527 5.339200 GGGGATCAAAATTAGTCAGTCCTGA 60.339 44.000 0.00 0.00 37.24 3.86
2361 2555 2.504367 TGCTCTTACAAGCTTTGGGTC 58.496 47.619 0.00 0.00 42.94 4.46
2369 2563 2.747855 GCTTTGGGTCGGCCTCAG 60.748 66.667 5.77 0.00 34.45 3.35
2396 2590 2.357517 CTTGACGAGGCGGTGCTT 60.358 61.111 0.00 0.00 0.00 3.91
2406 2600 3.303132 CGAGGCGGTGCTTATGAAATTAC 60.303 47.826 0.00 0.00 0.00 1.89
2407 2601 3.877508 GAGGCGGTGCTTATGAAATTACT 59.122 43.478 0.00 0.00 0.00 2.24
2408 2602 4.270008 AGGCGGTGCTTATGAAATTACTT 58.730 39.130 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.698506 AGCCCTCCTACTTCGATCAG 58.301 55.000 0.00 0.00 0.00 2.90
12 13 2.032620 GAAGCCCTCCTACTTCGATCA 58.967 52.381 0.00 0.00 33.56 2.92
150 151 3.782244 CACGACGCTTGGCTGAGC 61.782 66.667 0.00 0.00 39.29 4.26
264 265 2.202824 CGCTACATCCGCCCGAAA 60.203 61.111 0.00 0.00 0.00 3.46
393 411 1.900245 TGAGCTGCAGCAAGATTTCA 58.100 45.000 38.24 27.93 45.16 2.69
466 484 1.800681 GGGTATGTTGGCGAACAGC 59.199 57.895 19.26 13.80 45.29 4.40
467 485 1.977594 GCGGGTATGTTGGCGAACAG 61.978 60.000 19.26 6.89 45.29 3.16
468 486 2.036006 GCGGGTATGTTGGCGAACA 61.036 57.895 16.94 16.94 46.13 3.18
469 487 2.789249 GCGGGTATGTTGGCGAAC 59.211 61.111 4.41 4.41 0.00 3.95
473 491 3.573491 GAGCGCGGGTATGTTGGC 61.573 66.667 8.83 0.00 0.00 4.52
474 492 2.173669 CAGAGCGCGGGTATGTTGG 61.174 63.158 8.83 0.00 0.00 3.77
475 493 1.148157 CTCAGAGCGCGGGTATGTTG 61.148 60.000 8.83 0.00 0.00 3.33
476 494 1.141881 CTCAGAGCGCGGGTATGTT 59.858 57.895 8.83 0.00 0.00 2.71
477 495 2.808315 CTCAGAGCGCGGGTATGT 59.192 61.111 8.83 0.00 0.00 2.29
478 496 2.659897 GCTCAGAGCGCGGGTATG 60.660 66.667 8.83 1.88 0.00 2.39
479 497 3.144120 CTGCTCAGAGCGCGGGTAT 62.144 63.158 17.81 0.00 46.26 2.73
480 498 3.826754 CTGCTCAGAGCGCGGGTA 61.827 66.667 17.81 0.00 46.26 3.69
483 501 4.869440 CTCCTGCTCAGAGCGCGG 62.869 72.222 17.81 18.92 46.26 6.46
520 538 0.039618 TCCCGAGTTTACCCGGTACT 59.960 55.000 0.00 0.00 43.93 2.73
521 539 1.114627 ATCCCGAGTTTACCCGGTAC 58.885 55.000 0.00 0.00 43.93 3.34
522 540 1.481772 CAATCCCGAGTTTACCCGGTA 59.518 52.381 0.00 0.00 43.93 4.02
529 547 4.935205 CACACTGATTCAATCCCGAGTTTA 59.065 41.667 0.00 0.00 0.00 2.01
578 596 1.532238 GCGGCTTTAAGAGGGGGAT 59.468 57.895 0.00 0.00 0.00 3.85
582 600 3.202706 GCCGCGGCTTTAAGAGGG 61.203 66.667 41.71 4.32 38.26 4.30
618 636 1.502231 ATGAATCCGATTTCGCCTCG 58.498 50.000 0.00 0.00 38.18 4.63
753 778 2.299013 GTCCTTTCTTTTTCCCGCCAAT 59.701 45.455 0.00 0.00 0.00 3.16
762 787 1.067060 GCGTGGCAGTCCTTTCTTTTT 59.933 47.619 0.00 0.00 0.00 1.94
767 792 2.946762 GTGCGTGGCAGTCCTTTC 59.053 61.111 0.00 0.00 40.08 2.62
800 825 4.069232 CTCCGGAGAGTGGCGCAA 62.069 66.667 28.21 0.00 35.21 4.85
839 864 3.172575 CAGCACCGAGTACGTGCG 61.173 66.667 15.68 8.36 44.43 5.34
840 865 2.809601 CCAGCACCGAGTACGTGC 60.810 66.667 14.35 14.35 42.23 5.34
841 866 2.809601 GCCAGCACCGAGTACGTG 60.810 66.667 0.00 0.00 37.88 4.49
842 867 3.282745 CTGCCAGCACCGAGTACGT 62.283 63.158 0.00 0.00 37.88 3.57
843 868 2.507102 CTGCCAGCACCGAGTACG 60.507 66.667 0.00 0.00 39.43 3.67
904 931 0.108041 GGAACTATGCCCGAAACCGA 60.108 55.000 0.00 0.00 0.00 4.69
905 932 0.391927 TGGAACTATGCCCGAAACCG 60.392 55.000 0.00 0.00 0.00 4.44
914 941 1.282157 ACTGGGAGGTTGGAACTATGC 59.718 52.381 0.00 0.00 0.00 3.14
927 955 3.414700 GCGTGTGCGAACTGGGAG 61.415 66.667 0.00 0.00 41.33 4.30
1184 1212 0.674581 TCGCAAGCACCCAGAAGATG 60.675 55.000 0.00 0.00 37.18 2.90
1186 1214 1.301716 GTCGCAAGCACCCAGAAGA 60.302 57.895 0.00 0.00 37.18 2.87
1214 1242 2.618709 CCGAAGCAGAGAAACCAAAGTT 59.381 45.455 0.00 0.00 38.03 2.66
1239 1267 3.739300 ACACACACTCACGTTATGCTAAC 59.261 43.478 0.00 0.00 0.00 2.34
1241 1269 3.254903 AGACACACACTCACGTTATGCTA 59.745 43.478 0.00 0.00 0.00 3.49
1242 1270 2.035961 AGACACACACTCACGTTATGCT 59.964 45.455 0.00 0.00 0.00 3.79
1243 1271 2.155732 CAGACACACACTCACGTTATGC 59.844 50.000 0.00 0.00 0.00 3.14
1260 1293 4.120589 ACCAAGAGAAAACGAGTTCAGAC 58.879 43.478 0.00 0.00 0.00 3.51
1270 1303 2.074576 GCCGACCTACCAAGAGAAAAC 58.925 52.381 0.00 0.00 0.00 2.43
1422 1456 8.562892 CAAGATGACAACATTTACTTCAGAAGT 58.437 33.333 19.81 19.81 39.99 3.01
1429 1463 9.520204 CTGAAAACAAGATGACAACATTTACTT 57.480 29.630 0.00 0.00 36.82 2.24
1442 1479 5.765182 AGGGAGTACAACTGAAAACAAGATG 59.235 40.000 0.00 0.00 0.00 2.90
1458 1495 3.889520 AATTTCAGACGGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
1461 1498 4.184629 CAAGTAATTTCAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
1462 1499 3.581332 ACAAGTAATTTCAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
1463 1500 3.933332 GACAAGTAATTTCAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
1464 1501 4.566004 TGACAAGTAATTTCAGACGGAGG 58.434 43.478 0.00 0.00 0.00 4.30
1465 1502 7.258441 TCTATGACAAGTAATTTCAGACGGAG 58.742 38.462 0.00 0.00 0.00 4.63
1466 1503 7.165460 TCTATGACAAGTAATTTCAGACGGA 57.835 36.000 0.00 0.00 0.00 4.69
1467 1504 7.827819 TTCTATGACAAGTAATTTCAGACGG 57.172 36.000 0.00 0.00 0.00 4.79
1504 1541 9.988815 AGACGCATTTTAATTCTAGATACATCT 57.011 29.630 0.00 0.00 40.86 2.90
1542 1579 9.504708 TCTGTCCGGAAATACTTACAATAAAAA 57.495 29.630 5.23 0.00 0.00 1.94
1543 1580 9.158233 CTCTGTCCGGAAATACTTACAATAAAA 57.842 33.333 5.23 0.00 0.00 1.52
1544 1581 7.767198 CCTCTGTCCGGAAATACTTACAATAAA 59.233 37.037 5.23 0.00 0.00 1.40
1545 1582 7.270047 CCTCTGTCCGGAAATACTTACAATAA 58.730 38.462 5.23 0.00 0.00 1.40
1546 1583 6.183360 CCCTCTGTCCGGAAATACTTACAATA 60.183 42.308 5.23 0.00 0.00 1.90
1547 1584 5.396436 CCCTCTGTCCGGAAATACTTACAAT 60.396 44.000 5.23 0.00 0.00 2.71
1548 1585 4.081309 CCCTCTGTCCGGAAATACTTACAA 60.081 45.833 5.23 0.00 0.00 2.41
1549 1586 3.449737 CCCTCTGTCCGGAAATACTTACA 59.550 47.826 5.23 0.00 0.00 2.41
1550 1587 3.703052 TCCCTCTGTCCGGAAATACTTAC 59.297 47.826 5.23 0.00 0.00 2.34
1551 1588 3.958798 CTCCCTCTGTCCGGAAATACTTA 59.041 47.826 5.23 0.00 0.00 2.24
1552 1589 2.766828 CTCCCTCTGTCCGGAAATACTT 59.233 50.000 5.23 0.00 0.00 2.24
1553 1590 2.292323 ACTCCCTCTGTCCGGAAATACT 60.292 50.000 5.23 0.00 0.00 2.12
1554 1591 2.108970 ACTCCCTCTGTCCGGAAATAC 58.891 52.381 5.23 0.00 0.00 1.89
1555 1592 2.544844 ACTCCCTCTGTCCGGAAATA 57.455 50.000 5.23 0.00 0.00 1.40
1556 1593 2.292323 ACTACTCCCTCTGTCCGGAAAT 60.292 50.000 5.23 0.00 0.00 2.17
1557 1594 1.076677 ACTACTCCCTCTGTCCGGAAA 59.923 52.381 5.23 0.00 0.00 3.13
1558 1595 0.702902 ACTACTCCCTCTGTCCGGAA 59.297 55.000 5.23 0.00 0.00 4.30
1559 1596 0.702902 AACTACTCCCTCTGTCCGGA 59.297 55.000 0.00 0.00 0.00 5.14
1560 1597 1.204941 CAAACTACTCCCTCTGTCCGG 59.795 57.143 0.00 0.00 0.00 5.14
1561 1598 1.404315 GCAAACTACTCCCTCTGTCCG 60.404 57.143 0.00 0.00 0.00 4.79
1562 1599 1.623811 TGCAAACTACTCCCTCTGTCC 59.376 52.381 0.00 0.00 0.00 4.02
1563 1600 3.265791 CATGCAAACTACTCCCTCTGTC 58.734 50.000 0.00 0.00 0.00 3.51
1564 1601 2.616510 GCATGCAAACTACTCCCTCTGT 60.617 50.000 14.21 0.00 0.00 3.41
1565 1602 2.012673 GCATGCAAACTACTCCCTCTG 58.987 52.381 14.21 0.00 0.00 3.35
1566 1603 1.912043 AGCATGCAAACTACTCCCTCT 59.088 47.619 21.98 0.00 0.00 3.69
1567 1604 2.409948 AGCATGCAAACTACTCCCTC 57.590 50.000 21.98 0.00 0.00 4.30
1568 1605 2.440409 CAAGCATGCAAACTACTCCCT 58.560 47.619 21.98 0.00 0.00 4.20
1569 1606 2.927553 CAAGCATGCAAACTACTCCC 57.072 50.000 21.98 0.00 0.00 4.30
1603 1640 5.007724 GGAAACACGACCAAATCATATCTCC 59.992 44.000 0.00 0.00 0.00 3.71
1614 1651 0.547075 TGGGAAGGAAACACGACCAA 59.453 50.000 0.00 0.00 0.00 3.67
1616 1653 2.625375 GTGGGAAGGAAACACGACC 58.375 57.895 0.00 0.00 0.00 4.79
1646 1685 0.590732 CTCTACGCGGCGTCGTTTAT 60.591 55.000 32.91 8.07 43.15 1.40
1647 1686 1.226101 CTCTACGCGGCGTCGTTTA 60.226 57.895 32.91 13.29 43.15 2.01
1656 1695 0.096976 CATGTTTTGCCTCTACGCGG 59.903 55.000 12.47 0.00 0.00 6.46
1657 1696 0.796312 ACATGTTTTGCCTCTACGCG 59.204 50.000 3.53 3.53 0.00 6.01
1658 1697 2.484264 AGAACATGTTTTGCCTCTACGC 59.516 45.455 13.36 0.00 0.00 4.42
1691 1732 4.059511 TCGTGAAAAGCATCGTCCTAAAA 58.940 39.130 0.00 0.00 0.00 1.52
1711 1752 2.169832 ATGAAGTTGTGTCAGGGTCG 57.830 50.000 0.00 0.00 0.00 4.79
1732 1773 9.552695 ACCATCCAGATTCATATAAGAGATACA 57.447 33.333 0.00 0.00 0.00 2.29
1735 1776 9.109246 TCAACCATCCAGATTCATATAAGAGAT 57.891 33.333 0.00 0.00 0.00 2.75
1736 1777 8.496534 TCAACCATCCAGATTCATATAAGAGA 57.503 34.615 0.00 0.00 0.00 3.10
1738 1779 9.342308 GTTTCAACCATCCAGATTCATATAAGA 57.658 33.333 0.00 0.00 0.00 2.10
1739 1780 8.285394 CGTTTCAACCATCCAGATTCATATAAG 58.715 37.037 0.00 0.00 0.00 1.73
1760 1951 2.032636 ACAATCGTTCGTTTCCCGTTTC 60.033 45.455 0.00 0.00 37.94 2.78
1764 1955 2.331194 AGTACAATCGTTCGTTTCCCG 58.669 47.619 0.00 0.00 38.13 5.14
1771 1962 2.182825 CGGAGGAAGTACAATCGTTCG 58.817 52.381 7.41 7.41 0.00 3.95
1785 1976 4.186159 GACAAATAATTCCGAACGGAGGA 58.814 43.478 15.34 3.20 46.06 3.71
1786 1977 3.000925 CGACAAATAATTCCGAACGGAGG 59.999 47.826 15.34 4.52 46.06 4.30
1787 1978 3.543460 GCGACAAATAATTCCGAACGGAG 60.543 47.826 15.34 5.60 46.06 4.63
1788 1979 2.349275 GCGACAAATAATTCCGAACGGA 59.651 45.455 12.04 12.04 43.52 4.69
1789 1980 2.094575 TGCGACAAATAATTCCGAACGG 59.905 45.455 6.94 6.94 0.00 4.44
1790 1981 3.342269 CTGCGACAAATAATTCCGAACG 58.658 45.455 0.00 0.00 0.00 3.95
1791 1982 3.126343 ACCTGCGACAAATAATTCCGAAC 59.874 43.478 0.00 0.00 0.00 3.95
1792 1983 3.340034 ACCTGCGACAAATAATTCCGAA 58.660 40.909 0.00 0.00 0.00 4.30
1793 1984 2.980568 ACCTGCGACAAATAATTCCGA 58.019 42.857 0.00 0.00 0.00 4.55
1794 1985 4.319477 CCATACCTGCGACAAATAATTCCG 60.319 45.833 0.00 0.00 0.00 4.30
1795 1986 4.819630 TCCATACCTGCGACAAATAATTCC 59.180 41.667 0.00 0.00 0.00 3.01
1796 1987 6.017109 ACATCCATACCTGCGACAAATAATTC 60.017 38.462 0.00 0.00 0.00 2.17
1797 1988 5.827797 ACATCCATACCTGCGACAAATAATT 59.172 36.000 0.00 0.00 0.00 1.40
1798 1989 5.376625 ACATCCATACCTGCGACAAATAAT 58.623 37.500 0.00 0.00 0.00 1.28
1799 1990 4.776349 ACATCCATACCTGCGACAAATAA 58.224 39.130 0.00 0.00 0.00 1.40
1800 1991 4.415881 ACATCCATACCTGCGACAAATA 57.584 40.909 0.00 0.00 0.00 1.40
1801 1992 3.281727 ACATCCATACCTGCGACAAAT 57.718 42.857 0.00 0.00 0.00 2.32
1802 1993 2.779755 ACATCCATACCTGCGACAAA 57.220 45.000 0.00 0.00 0.00 2.83
1803 1994 3.641436 AGATACATCCATACCTGCGACAA 59.359 43.478 0.00 0.00 0.00 3.18
1804 1995 3.230976 AGATACATCCATACCTGCGACA 58.769 45.455 0.00 0.00 0.00 4.35
1805 1996 3.944055 AGATACATCCATACCTGCGAC 57.056 47.619 0.00 0.00 0.00 5.19
1806 1997 4.918588 TCTAGATACATCCATACCTGCGA 58.081 43.478 0.00 0.00 0.00 5.10
1807 1998 5.126222 ACATCTAGATACATCCATACCTGCG 59.874 44.000 4.54 0.00 0.00 5.18
1808 1999 6.537453 ACATCTAGATACATCCATACCTGC 57.463 41.667 4.54 0.00 0.00 4.85
1835 2026 8.826710 CGCAGAAATGGATGTATCTAAAACTAA 58.173 33.333 0.00 0.00 0.00 2.24
1836 2027 8.201464 TCGCAGAAATGGATGTATCTAAAACTA 58.799 33.333 0.00 0.00 0.00 2.24
1837 2028 7.011482 GTCGCAGAAATGGATGTATCTAAAACT 59.989 37.037 0.00 0.00 39.69 2.66
1838 2029 7.126398 GTCGCAGAAATGGATGTATCTAAAAC 58.874 38.462 0.00 0.00 39.69 2.43
1839 2030 6.019075 CGTCGCAGAAATGGATGTATCTAAAA 60.019 38.462 0.00 0.00 39.69 1.52
1840 2031 5.462068 CGTCGCAGAAATGGATGTATCTAAA 59.538 40.000 0.00 0.00 39.69 1.85
1841 2032 4.982295 CGTCGCAGAAATGGATGTATCTAA 59.018 41.667 0.00 0.00 39.69 2.10
1842 2033 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
1843 2034 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
1844 2035 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
1845 2036 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
1846 2037 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
1847 2038 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
1848 2039 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
1849 2040 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
1850 2041 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
1851 2042 4.334443 CAAATTACTCGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
1852 2043 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
1853 2044 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
1854 2045 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
1855 2046 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
1856 2047 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
1857 2048 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
1858 2049 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
1859 2050 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
1860 2051 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
1861 2052 3.841643 TCTCCGTTCCAAATTACTCGTC 58.158 45.455 0.00 0.00 0.00 4.20
1862 2053 3.508793 TCTCTCCGTTCCAAATTACTCGT 59.491 43.478 0.00 0.00 0.00 4.18
1863 2054 4.106029 TCTCTCCGTTCCAAATTACTCG 57.894 45.455 0.00 0.00 0.00 4.18
1864 2055 8.488651 TTTAATCTCTCCGTTCCAAATTACTC 57.511 34.615 0.00 0.00 0.00 2.59
1865 2056 8.857694 TTTTAATCTCTCCGTTCCAAATTACT 57.142 30.769 0.00 0.00 0.00 2.24
1866 2057 8.727910 ACTTTTAATCTCTCCGTTCCAAATTAC 58.272 33.333 0.00 0.00 0.00 1.89
1867 2058 8.857694 ACTTTTAATCTCTCCGTTCCAAATTA 57.142 30.769 0.00 0.00 0.00 1.40
1868 2059 7.761038 ACTTTTAATCTCTCCGTTCCAAATT 57.239 32.000 0.00 0.00 0.00 1.82
1869 2060 7.761038 AACTTTTAATCTCTCCGTTCCAAAT 57.239 32.000 0.00 0.00 0.00 2.32
1870 2061 8.562052 GTTAACTTTTAATCTCTCCGTTCCAAA 58.438 33.333 0.00 0.00 0.00 3.28
1871 2062 7.716123 TGTTAACTTTTAATCTCTCCGTTCCAA 59.284 33.333 7.22 0.00 0.00 3.53
1872 2063 7.218614 TGTTAACTTTTAATCTCTCCGTTCCA 58.781 34.615 7.22 0.00 0.00 3.53
1873 2064 7.662604 TGTTAACTTTTAATCTCTCCGTTCC 57.337 36.000 7.22 0.00 0.00 3.62
1874 2065 8.932791 TCATGTTAACTTTTAATCTCTCCGTTC 58.067 33.333 7.22 0.00 0.00 3.95
1875 2066 8.842358 TCATGTTAACTTTTAATCTCTCCGTT 57.158 30.769 7.22 0.00 0.00 4.44
1876 2067 7.064728 GCTCATGTTAACTTTTAATCTCTCCGT 59.935 37.037 7.22 0.00 0.00 4.69
1877 2068 7.278868 AGCTCATGTTAACTTTTAATCTCTCCG 59.721 37.037 7.22 0.00 0.00 4.63
1878 2069 8.499403 AGCTCATGTTAACTTTTAATCTCTCC 57.501 34.615 7.22 0.00 0.00 3.71
1879 2070 8.608317 GGAGCTCATGTTAACTTTTAATCTCTC 58.392 37.037 17.19 2.63 0.00 3.20
1880 2071 8.103305 TGGAGCTCATGTTAACTTTTAATCTCT 58.897 33.333 17.19 0.00 0.00 3.10
1881 2072 8.268850 TGGAGCTCATGTTAACTTTTAATCTC 57.731 34.615 17.19 5.09 0.00 2.75
1882 2073 7.885399 ACTGGAGCTCATGTTAACTTTTAATCT 59.115 33.333 17.19 0.00 0.00 2.40
1883 2074 8.045176 ACTGGAGCTCATGTTAACTTTTAATC 57.955 34.615 17.19 0.00 0.00 1.75
1884 2075 8.409358 AACTGGAGCTCATGTTAACTTTTAAT 57.591 30.769 17.19 0.00 0.00 1.40
1885 2076 7.817418 AACTGGAGCTCATGTTAACTTTTAA 57.183 32.000 17.19 0.00 0.00 1.52
1886 2077 7.817418 AAACTGGAGCTCATGTTAACTTTTA 57.183 32.000 17.19 0.00 0.00 1.52
1924 2115 7.013083 AGAGTAGATGCTAAGAATGCAAAATGG 59.987 37.037 0.00 0.00 44.01 3.16
1932 2123 5.218885 CGTCCAGAGTAGATGCTAAGAATG 58.781 45.833 0.00 0.00 0.00 2.67
1934 2125 4.096532 CACGTCCAGAGTAGATGCTAAGAA 59.903 45.833 0.00 0.00 0.00 2.52
1939 2130 1.840737 ACACGTCCAGAGTAGATGCT 58.159 50.000 0.00 0.00 0.00 3.79
1947 2138 3.502920 GTCAGATTGTACACGTCCAGAG 58.497 50.000 0.00 0.00 0.00 3.35
1948 2139 2.230508 GGTCAGATTGTACACGTCCAGA 59.769 50.000 0.00 0.00 0.00 3.86
1949 2140 2.231478 AGGTCAGATTGTACACGTCCAG 59.769 50.000 0.00 0.00 0.00 3.86
1950 2141 2.230508 GAGGTCAGATTGTACACGTCCA 59.769 50.000 0.00 0.00 0.00 4.02
1951 2142 2.492484 AGAGGTCAGATTGTACACGTCC 59.508 50.000 0.00 0.00 0.00 4.79
1953 2144 3.154710 TGAGAGGTCAGATTGTACACGT 58.845 45.455 0.00 0.00 0.00 4.49
1954 2145 3.850122 TGAGAGGTCAGATTGTACACG 57.150 47.619 0.00 0.00 0.00 4.49
1955 2146 4.386049 CGTTTGAGAGGTCAGATTGTACAC 59.614 45.833 0.00 0.00 32.98 2.90
1956 2147 4.038763 ACGTTTGAGAGGTCAGATTGTACA 59.961 41.667 0.00 0.00 32.98 2.90
1957 2148 4.557205 ACGTTTGAGAGGTCAGATTGTAC 58.443 43.478 0.00 0.00 32.98 2.90
1958 2149 4.523173 AGACGTTTGAGAGGTCAGATTGTA 59.477 41.667 0.00 0.00 43.81 2.41
1959 2150 3.322254 AGACGTTTGAGAGGTCAGATTGT 59.678 43.478 0.00 0.00 43.81 2.71
1960 2151 3.919216 AGACGTTTGAGAGGTCAGATTG 58.081 45.455 0.00 0.00 43.81 2.67
1961 2152 5.723672 TTAGACGTTTGAGAGGTCAGATT 57.276 39.130 0.00 0.00 43.81 2.40
1962 2153 5.419155 TGATTAGACGTTTGAGAGGTCAGAT 59.581 40.000 0.00 0.00 43.81 2.90
1963 2154 4.765339 TGATTAGACGTTTGAGAGGTCAGA 59.235 41.667 0.00 0.00 43.81 3.27
1964 2155 5.060662 TGATTAGACGTTTGAGAGGTCAG 57.939 43.478 0.00 0.00 43.81 3.51
1965 2156 4.765339 TCTGATTAGACGTTTGAGAGGTCA 59.235 41.667 0.00 0.00 43.81 4.02
1988 2179 3.692101 TGTCCGAACAATGTTCAAGTTGT 59.308 39.130 23.72 0.00 40.06 3.32
1996 2187 3.338249 CCTCATCTGTCCGAACAATGTT 58.662 45.455 0.00 0.00 34.24 2.71
1997 2188 2.355108 CCCTCATCTGTCCGAACAATGT 60.355 50.000 0.00 0.00 34.24 2.71
2000 2191 0.613260 CCCCTCATCTGTCCGAACAA 59.387 55.000 0.00 0.00 34.24 2.83
2004 2195 1.075970 CCTCCCCTCATCTGTCCGA 60.076 63.158 0.00 0.00 0.00 4.55
2012 2203 1.886422 GACTCCTTTCCTCCCCTCAT 58.114 55.000 0.00 0.00 0.00 2.90
2016 2207 2.585153 GCGACTCCTTTCCTCCCC 59.415 66.667 0.00 0.00 0.00 4.81
2017 2208 2.585153 GGCGACTCCTTTCCTCCC 59.415 66.667 0.00 0.00 0.00 4.30
2024 2215 2.032681 GTGCTTGGGCGACTCCTT 59.967 61.111 0.00 0.00 42.25 3.36
2026 2217 2.281484 TTGTGCTTGGGCGACTCC 60.281 61.111 0.00 0.00 42.25 3.85
2027 2218 2.617274 GGTTGTGCTTGGGCGACTC 61.617 63.158 0.00 0.00 42.25 3.36
2032 2223 2.203480 TGAGGGTTGTGCTTGGGC 60.203 61.111 0.00 0.00 39.26 5.36
2038 2229 0.668535 GGACAAAGTGAGGGTTGTGC 59.331 55.000 0.00 0.00 38.07 4.57
2056 2247 0.668401 GACTTACCGGACACGTTGGG 60.668 60.000 9.46 0.00 38.78 4.12
2058 2249 0.032403 TGGACTTACCGGACACGTTG 59.968 55.000 9.46 0.00 42.61 4.10
2059 2250 0.032540 GTGGACTTACCGGACACGTT 59.967 55.000 9.46 0.00 42.61 3.99
2062 2253 2.243602 TTTGTGGACTTACCGGACAC 57.756 50.000 9.46 7.78 42.61 3.67
2068 2259 8.974060 TGAATATAGGAATTTGTGGACTTACC 57.026 34.615 0.00 0.00 39.54 2.85
2083 2274 9.964354 CTTCCCACATATGAATTGAATATAGGA 57.036 33.333 10.38 0.00 0.00 2.94
2090 2281 8.447200 TCATATCCTTCCCACATATGAATTGAA 58.553 33.333 10.38 5.76 36.84 2.69
2091 2282 7.987820 TCATATCCTTCCCACATATGAATTGA 58.012 34.615 10.38 0.00 36.84 2.57
2095 2286 6.090870 TCCTCATATCCTTCCCACATATGAA 58.909 40.000 10.38 0.00 38.47 2.57
2105 2296 3.307059 CCCGAACATCCTCATATCCTTCC 60.307 52.174 0.00 0.00 0.00 3.46
2107 2298 2.039084 GCCCGAACATCCTCATATCCTT 59.961 50.000 0.00 0.00 0.00 3.36
2116 2307 4.115199 GGGCTGCCCGAACATCCT 62.115 66.667 24.16 0.00 32.13 3.24
2127 2318 1.338579 GCATCCTACATAGAGGGCTGC 60.339 57.143 0.00 0.00 38.01 5.25
2128 2319 1.067283 CGCATCCTACATAGAGGGCTG 60.067 57.143 0.00 0.00 37.20 4.85
2159 2350 5.860716 GCATGAAGAAAGAGAAAATGTGGTC 59.139 40.000 0.00 0.00 0.00 4.02
2165 2356 5.718130 TGATGGGCATGAAGAAAGAGAAAAT 59.282 36.000 0.00 0.00 0.00 1.82
2169 2360 4.305539 TTGATGGGCATGAAGAAAGAGA 57.694 40.909 0.00 0.00 0.00 3.10
2170 2361 4.643334 TGATTGATGGGCATGAAGAAAGAG 59.357 41.667 0.00 0.00 0.00 2.85
2194 2388 2.973694 ATTGCCCAGTCAAATGCATC 57.026 45.000 0.00 0.00 33.08 3.91
2209 2403 2.695147 CCCCTACATTCTCCCAAATTGC 59.305 50.000 0.00 0.00 0.00 3.56
2239 2433 5.047872 TGAGTCTTTATTTGTGCATGCATGT 60.048 36.000 25.64 12.45 0.00 3.21
2250 2444 5.619607 CGTGTCCGTTTTGAGTCTTTATTTG 59.380 40.000 0.00 0.00 0.00 2.32
2255 2449 1.329599 GCGTGTCCGTTTTGAGTCTTT 59.670 47.619 0.00 0.00 36.15 2.52
2288 2482 3.710044 CATCCGTGGATGTGCTCG 58.290 61.111 18.76 0.00 44.93 5.03
2323 2517 9.796120 GTAAGAGCATATATAATCAGGACTGAC 57.204 37.037 3.82 0.00 43.11 3.51
2324 2518 9.533831 TGTAAGAGCATATATAATCAGGACTGA 57.466 33.333 4.26 4.26 44.59 3.41
2327 2521 9.092876 GCTTGTAAGAGCATATATAATCAGGAC 57.907 37.037 0.00 0.00 42.25 3.85
2333 2527 9.236006 CCCAAAGCTTGTAAGAGCATATATAAT 57.764 33.333 0.00 0.00 45.12 1.28
2342 2536 1.464997 CGACCCAAAGCTTGTAAGAGC 59.535 52.381 0.00 0.00 43.02 4.09
2352 2546 2.747855 CTGAGGCCGACCCAAAGC 60.748 66.667 0.00 0.00 36.11 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.