Multiple sequence alignment - TraesCS3A01G159600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G159600 chr3A 100.000 7239 0 0 834 8072 159422651 159429889 0.000000e+00 13369
1 TraesCS3A01G159600 chr3A 89.816 923 70 13 6852 7769 159720239 159721142 0.000000e+00 1162
2 TraesCS3A01G159600 chr3A 100.000 567 0 0 1 567 159421818 159422384 0.000000e+00 1048
3 TraesCS3A01G159600 chr3A 91.569 510 34 1 6347 6856 159718206 159718706 0.000000e+00 695
4 TraesCS3A01G159600 chr3A 89.641 473 45 4 7267 7737 159833593 159834063 4.170000e-167 599
5 TraesCS3A01G159600 chr3A 100.000 56 0 0 7990 8045 159429753 159429808 3.980000e-18 104
6 TraesCS3A01G159600 chr3A 100.000 56 0 0 7936 7991 159429807 159429862 3.980000e-18 104
7 TraesCS3A01G159600 chr3D 95.402 4350 126 28 834 5146 141206024 141210336 0.000000e+00 6857
8 TraesCS3A01G159600 chr3D 95.398 2412 84 11 5345 7749 141210326 141212717 0.000000e+00 3814
9 TraesCS3A01G159600 chr3D 91.880 468 31 6 7267 7727 141412166 141412633 0.000000e+00 647
10 TraesCS3A01G159600 chr3D 86.301 584 53 12 3 567 141205425 141206000 1.930000e-170 610
11 TraesCS3A01G159600 chr3B 95.495 3774 120 29 834 4579 202924229 202927980 0.000000e+00 5982
12 TraesCS3A01G159600 chr3B 95.228 2368 90 8 5345 7704 202928578 202930930 0.000000e+00 3725
13 TraesCS3A01G159600 chr3B 95.724 608 23 1 4542 5146 202927981 202928588 0.000000e+00 976
14 TraesCS3A01G159600 chr3B 90.909 473 38 3 7269 7737 203347863 203348334 1.480000e-176 630
15 TraesCS3A01G159600 chr3B 89.633 463 43 3 7269 7727 203554478 203554939 1.170000e-162 584
16 TraesCS3A01G159600 chr3B 88.946 389 38 4 7343 7727 203348781 203349168 7.330000e-130 475
17 TraesCS3A01G159600 chr3B 97.449 196 4 1 373 567 202924010 202924205 4.670000e-87 333
18 TraesCS3A01G159600 chr3B 82.386 352 36 13 3 332 202923666 202924013 4.770000e-72 283
19 TraesCS3A01G159600 chr6A 97.476 1585 36 4 6409 7991 146445054 146443472 0.000000e+00 2702
20 TraesCS3A01G159600 chr6A 89.648 483 36 5 7267 7737 146438788 146438308 3.220000e-168 603
21 TraesCS3A01G159600 chr6A 89.487 390 32 8 7343 7727 146437883 146437498 1.220000e-132 484
22 TraesCS3A01G159600 chr6A 88.095 210 19 5 5144 5349 495339877 495339670 2.250000e-60 244
23 TraesCS3A01G159600 chr6A 97.590 83 2 0 7990 8072 146443527 146443445 8.440000e-30 143
24 TraesCS3A01G159600 chrUn 93.659 205 12 1 5145 5348 96016472 96016268 1.020000e-78 305
25 TraesCS3A01G159600 chr6D 93.171 205 14 0 5144 5348 275513896 275513692 1.320000e-77 302
26 TraesCS3A01G159600 chr5B 91.469 211 14 3 4360 4568 709933297 709933505 3.690000e-73 287
27 TraesCS3A01G159600 chr5B 88.557 201 19 3 5145 5344 653743903 653743706 2.910000e-59 241
28 TraesCS3A01G159600 chr2A 91.707 205 15 1 5144 5348 469454273 469454071 4.770000e-72 283
29 TraesCS3A01G159600 chr2A 90.431 209 18 1 5140 5348 82031873 82031667 2.870000e-69 274
30 TraesCS3A01G159600 chr5D 90.995 211 15 3 4360 4568 412722761 412722553 1.720000e-71 281
31 TraesCS3A01G159600 chr7D 89.216 204 20 2 5146 5348 413543538 413543336 3.740000e-63 254
32 TraesCS3A01G159600 chr7D 87.745 204 16 7 5144 5344 485848097 485848294 6.300000e-56 230
33 TraesCS3A01G159600 chr7D 87.081 209 17 8 5144 5345 194802098 194802303 2.270000e-55 228


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G159600 chr3A 159421818 159429889 8071 False 3656.250000 13369 100.0000 1 8072 4 chr3A.!!$F2 8071
1 TraesCS3A01G159600 chr3A 159718206 159721142 2936 False 928.500000 1162 90.6925 6347 7769 2 chr3A.!!$F3 1422
2 TraesCS3A01G159600 chr3D 141205425 141212717 7292 False 3760.333333 6857 92.3670 3 7749 3 chr3D.!!$F2 7746
3 TraesCS3A01G159600 chr3B 202923666 202930930 7264 False 2259.800000 5982 93.2564 3 7704 5 chr3B.!!$F2 7701
4 TraesCS3A01G159600 chr3B 203347863 203349168 1305 False 552.500000 630 89.9275 7269 7737 2 chr3B.!!$F3 468
5 TraesCS3A01G159600 chr6A 146443445 146445054 1609 True 1422.500000 2702 97.5330 6409 8072 2 chr6A.!!$R3 1663
6 TraesCS3A01G159600 chr6A 146437498 146438788 1290 True 543.500000 603 89.5675 7267 7737 2 chr6A.!!$R2 470

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 109 0.171903 GATGCTGTGGTGCCAATGAC 59.828 55.000 0.00 0.00 0.00 3.06 F
357 383 0.541863 CATAGACACCAGTGGACCCC 59.458 60.000 18.40 1.78 34.19 4.95 F
358 384 0.620700 ATAGACACCAGTGGACCCCC 60.621 60.000 18.40 0.00 34.19 5.40 F
1504 1531 0.664466 GCGAAGTTTCCCAGCTTTGC 60.664 55.000 0.00 0.00 42.58 3.68 F
2356 2417 0.798776 AGCGCAATGTGTTAGACTGC 59.201 50.000 11.47 0.00 0.00 4.40 F
2736 2797 1.055849 TTGGGCTGCTTCAGTACAGA 58.944 50.000 0.00 0.00 35.90 3.41 F
2805 2866 2.038837 GCTTGGGTTACCTGGACGC 61.039 63.158 0.00 0.00 37.76 5.19 F
3037 3102 3.141398 TGCAAAGCTCTTGAGGTTAGTG 58.859 45.455 14.29 11.28 0.00 2.74 F
4315 4381 2.031870 GCCCCACTTGAACTTGACTTT 58.968 47.619 0.00 0.00 0.00 2.66 F
5192 5306 0.170339 AAATAAAGCAACCGCCGAGC 59.830 50.000 0.00 0.00 39.83 5.03 F
5279 5393 0.027586 GCACAGACACACACGAAACC 59.972 55.000 0.00 0.00 0.00 3.27 F
5319 5433 0.031178 GCTCAACAAGCCCAACACTG 59.969 55.000 0.00 0.00 45.92 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1484 1511 0.039165 CAAAGCTGGGAAACTTCGCC 60.039 55.000 4.28 0.0 39.17 5.54 R
1793 1840 0.531311 GTAATTGGCGAGTACCCCCG 60.531 60.000 0.81 0.0 0.00 5.73 R
2303 2364 4.159693 TGTGACAAGCGATACCTACTTCAT 59.840 41.667 0.00 0.0 0.00 2.57 R
3264 3329 4.631377 CCTTCATTGCAAATCTGAGTACGA 59.369 41.667 1.71 0.0 0.00 3.43 R
3552 3617 1.246737 CCTTGCCAGAAACTCCCTGC 61.247 60.000 0.00 0.0 0.00 4.85 R
3819 3884 2.762327 TCCGTTACCAGCTACCTTTAGG 59.238 50.000 0.00 0.0 42.17 2.69 R
3837 3902 3.539604 AGAAGCTTCATTGGATTCTCCG 58.460 45.455 27.57 0.0 40.17 4.63 R
4905 5019 2.964464 TGAATGCACCCTGAACAACATT 59.036 40.909 0.00 0.0 0.00 2.71 R
5260 5374 0.027586 GGTTTCGTGTGTGTCTGTGC 59.972 55.000 0.00 0.0 0.00 4.57 R
6219 6335 1.014352 GGTTAAATGCCGCGTCTGAT 58.986 50.000 4.92 0.0 0.00 2.90 R
6379 6495 3.157087 AGTGGCTACCATTTTCTTGTGG 58.843 45.455 0.00 0.0 41.35 4.17 R
7413 9075 1.624336 AGCAAGCCTCAAAATGCTCA 58.376 45.000 0.00 0.0 45.49 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.096852 TGGTAGACTTCGATGGTCACAT 58.903 45.455 17.34 4.11 40.85 3.21
30 31 1.812571 ACTTCGATGGTCACATTTGGC 59.187 47.619 3.12 0.00 37.47 4.52
47 48 1.816537 GCAGAGTGCCTCATACCGA 59.183 57.895 5.21 0.00 37.42 4.69
75 76 3.244215 GCGGGAAGATGAATAGATGGACA 60.244 47.826 0.00 0.00 0.00 4.02
80 81 5.936956 GGAAGATGAATAGATGGACATGGTC 59.063 44.000 0.00 0.00 0.00 4.02
82 83 3.751479 TGAATAGATGGACATGGTCGG 57.249 47.619 0.00 0.00 32.65 4.79
84 85 3.321968 TGAATAGATGGACATGGTCGGAG 59.678 47.826 0.00 0.00 32.65 4.63
95 97 4.148825 GTCGGAGGGCGATGCTGT 62.149 66.667 0.00 0.00 0.00 4.40
107 109 0.171903 GATGCTGTGGTGCCAATGAC 59.828 55.000 0.00 0.00 0.00 3.06
108 110 1.252904 ATGCTGTGGTGCCAATGACC 61.253 55.000 0.00 0.00 0.00 4.02
138 140 2.646175 GGAGCTGTGGCGAGTACCA 61.646 63.158 0.00 0.00 44.37 3.25
146 148 1.563924 TGGCGAGTACCACTGGTAAT 58.436 50.000 9.66 8.79 40.12 1.89
155 157 2.981898 ACCACTGGTAATTTAGTCGCC 58.018 47.619 0.00 0.00 32.11 5.54
156 158 1.931172 CCACTGGTAATTTAGTCGCCG 59.069 52.381 0.00 0.00 0.00 6.46
159 161 1.850441 CTGGTAATTTAGTCGCCGACG 59.150 52.381 12.13 0.00 37.67 5.12
167 169 2.791396 TAGTCGCCGACGTCACTTGC 62.791 60.000 17.16 10.94 41.18 4.01
169 171 3.112075 CGCCGACGTCACTTGCAT 61.112 61.111 17.16 0.00 33.53 3.96
173 181 1.710013 CCGACGTCACTTGCATAACT 58.290 50.000 17.16 0.00 0.00 2.24
176 184 2.475111 CGACGTCACTTGCATAACTGTT 59.525 45.455 17.16 0.00 0.00 3.16
180 188 3.120546 CGTCACTTGCATAACTGTTGGAG 60.121 47.826 2.69 0.00 0.00 3.86
181 189 3.815401 GTCACTTGCATAACTGTTGGAGT 59.185 43.478 2.69 0.00 35.94 3.85
182 190 4.065088 TCACTTGCATAACTGTTGGAGTC 58.935 43.478 2.69 0.00 31.73 3.36
186 194 2.000447 GCATAACTGTTGGAGTCGACC 59.000 52.381 13.01 3.55 31.73 4.79
190 198 3.263503 CTGTTGGAGTCGACCGCGA 62.264 63.158 13.01 0.00 45.71 5.87
204 212 1.137825 CGCGAGAGAGTTCCTCCAC 59.862 63.158 0.00 0.00 42.97 4.02
268 291 8.798859 ACTCTCTCTAACTAAAACACGGTATA 57.201 34.615 0.00 0.00 0.00 1.47
272 295 8.565896 TCTCTAACTAAAACACGGTATAGTCA 57.434 34.615 0.00 0.00 0.00 3.41
329 352 7.274250 GCTCCAAATCATAGACAAAAACACATC 59.726 37.037 0.00 0.00 0.00 3.06
356 382 1.568504 TCATAGACACCAGTGGACCC 58.431 55.000 18.40 3.70 34.19 4.46
357 383 0.541863 CATAGACACCAGTGGACCCC 59.458 60.000 18.40 1.78 34.19 4.95
358 384 0.620700 ATAGACACCAGTGGACCCCC 60.621 60.000 18.40 0.00 34.19 5.40
385 411 2.347490 CCCCTCGTCCACTTGTGG 59.653 66.667 13.24 13.24 0.00 4.17
907 934 1.152715 CCTACTCCTCTCCCCGTCC 60.153 68.421 0.00 0.00 0.00 4.79
965 992 2.045242 CAGCACCAGCAGCATCCT 60.045 61.111 0.00 0.00 45.49 3.24
966 993 2.045242 AGCACCAGCAGCATCCTG 60.045 61.111 0.00 0.00 45.49 3.86
967 994 2.045634 GCACCAGCAGCATCCTGA 60.046 61.111 0.00 0.00 41.77 3.86
968 995 2.404995 GCACCAGCAGCATCCTGAC 61.405 63.158 0.00 0.00 41.77 3.51
970 997 2.513204 CCAGCAGCATCCTGACCG 60.513 66.667 0.00 0.00 41.77 4.79
1020 1047 0.976073 TGGACATCGACCCTTCCTCC 60.976 60.000 0.00 0.00 0.00 4.30
1269 1296 4.057428 GAGACCCAGCGAGCACGT 62.057 66.667 5.23 0.00 41.98 4.49
1280 1307 2.431942 AGCACGTTCCGGTAAGCG 60.432 61.111 0.00 0.00 0.00 4.68
1344 1371 1.006102 CCTGGATCGTACGGGATGC 60.006 63.158 16.52 8.45 36.43 3.91
1366 1393 5.088739 GCTTACATCGTGATTTTGTTCCTG 58.911 41.667 0.00 0.00 0.00 3.86
1451 1478 5.050702 GGAATCTTGCTGTTATTCTAGTCGC 60.051 44.000 0.00 0.00 31.66 5.19
1469 1496 2.880268 TCGCTAGCACGCTAACCTTATA 59.120 45.455 16.45 0.00 0.00 0.98
1484 1511 7.693120 GCTAACCTTATATTCTCTGTACGATCG 59.307 40.741 14.88 14.88 0.00 3.69
1504 1531 0.664466 GCGAAGTTTCCCAGCTTTGC 60.664 55.000 0.00 0.00 42.58 3.68
1506 1533 0.664466 GAAGTTTCCCAGCTTTGCGC 60.664 55.000 0.00 0.00 39.57 6.09
1688 1735 6.379386 GTGTTTAATTAGTCTGAACAAGCCC 58.621 40.000 2.10 0.00 32.66 5.19
1740 1787 0.871722 AATGCGTGCGTGCTTTCTTA 59.128 45.000 1.52 0.00 35.36 2.10
1793 1840 5.071115 AGCTTATTGGATTCCACTAGGAGAC 59.929 44.000 14.14 3.63 46.74 3.36
1913 1961 4.523943 TGCTATTGTTGCCTGAGTCATTTT 59.476 37.500 0.00 0.00 0.00 1.82
1981 2038 1.103803 TGCCTCTAAAGCGATCTCGT 58.896 50.000 1.14 0.00 42.22 4.18
2255 2316 5.961272 TCACTTTACTGTAAGCATCGATGA 58.039 37.500 29.20 5.29 37.60 2.92
2284 2345 6.307155 CAGTTAACAAACTTTATGGCTCTCG 58.693 40.000 8.61 0.00 0.00 4.04
2308 2369 7.740519 GGAAACATATTTTCCGTTCATGAAG 57.259 36.000 8.80 3.26 38.62 3.02
2347 2408 5.397240 CACATATTTACATGAGCGCAATGTG 59.603 40.000 28.76 19.13 36.74 3.21
2356 2417 0.798776 AGCGCAATGTGTTAGACTGC 59.201 50.000 11.47 0.00 0.00 4.40
2372 2433 4.907809 AGACTGCATGGATGATTCATAGG 58.092 43.478 0.00 0.00 0.00 2.57
2376 2437 5.533903 ACTGCATGGATGATTCATAGGAAAC 59.466 40.000 0.00 0.00 36.43 2.78
2425 2486 8.470002 GTGGCATTCCTTTCTTATTTATGTTCT 58.530 33.333 0.00 0.00 0.00 3.01
2427 2488 9.305925 GGCATTCCTTTCTTATTTATGTTCTTG 57.694 33.333 0.00 0.00 0.00 3.02
2430 2491 8.650143 TTCCTTTCTTATTTATGTTCTTGGCT 57.350 30.769 0.00 0.00 0.00 4.75
2432 2493 7.669722 TCCTTTCTTATTTATGTTCTTGGCTGT 59.330 33.333 0.00 0.00 0.00 4.40
2553 2614 1.803998 GCTCTGCATGACGATAGCACA 60.804 52.381 0.00 0.00 42.67 4.57
2736 2797 1.055849 TTGGGCTGCTTCAGTACAGA 58.944 50.000 0.00 0.00 35.90 3.41
2805 2866 2.038837 GCTTGGGTTACCTGGACGC 61.039 63.158 0.00 0.00 37.76 5.19
2961 3022 5.181056 TGTTCAATCATGTATTGCTGTCGTT 59.819 36.000 11.01 0.00 44.03 3.85
3037 3102 3.141398 TGCAAAGCTCTTGAGGTTAGTG 58.859 45.455 14.29 11.28 0.00 2.74
3038 3103 3.142174 GCAAAGCTCTTGAGGTTAGTGT 58.858 45.455 14.29 0.00 0.00 3.55
3039 3104 3.565902 GCAAAGCTCTTGAGGTTAGTGTT 59.434 43.478 14.29 0.00 0.00 3.32
3040 3105 4.036852 GCAAAGCTCTTGAGGTTAGTGTTT 59.963 41.667 14.29 0.00 0.00 2.83
3044 3109 5.059833 AGCTCTTGAGGTTAGTGTTTTCTG 58.940 41.667 0.00 0.00 0.00 3.02
3104 3169 6.045459 AGGGGACATTGCTGGACATTATATAA 59.955 38.462 0.00 0.00 0.00 0.98
3264 3329 6.462347 GGGGTGATTTATGTGTTTCTGTGTTT 60.462 38.462 0.00 0.00 0.00 2.83
3819 3884 4.744570 TGATCAATCAGTGTCTCCGTAAC 58.255 43.478 0.00 0.00 32.11 2.50
4315 4381 2.031870 GCCCCACTTGAACTTGACTTT 58.968 47.619 0.00 0.00 0.00 2.66
4561 4627 3.534554 TGTCATGACACCATAGATGTGC 58.465 45.455 24.56 0.00 36.21 4.57
4816 4930 3.369471 CGAATAGCAGAACTTGGGAAGGA 60.369 47.826 0.00 0.00 0.00 3.36
4886 5000 8.437575 TCTATGTTCCTTTCTTCAGTTTAGGTT 58.562 33.333 0.00 0.00 0.00 3.50
5040 5154 2.086610 ATGGATTTGTATGGGTGGGC 57.913 50.000 0.00 0.00 0.00 5.36
5078 5192 7.031226 ACACAGTGCACCAATGATATTTATC 57.969 36.000 14.63 0.00 33.46 1.75
5146 5260 8.081633 TGAGGATGTTTTGTTTGACATGATTAC 58.918 33.333 0.00 0.00 36.67 1.89
5147 5261 7.378181 AGGATGTTTTGTTTGACATGATTACC 58.622 34.615 0.00 0.00 36.67 2.85
5148 5262 6.307800 GGATGTTTTGTTTGACATGATTACCG 59.692 38.462 0.00 0.00 36.67 4.02
5149 5263 6.378710 TGTTTTGTTTGACATGATTACCGA 57.621 33.333 0.00 0.00 0.00 4.69
5153 5267 8.596380 GTTTTGTTTGACATGATTACCGAAAAA 58.404 29.630 0.00 0.00 0.00 1.94
5155 5269 6.442952 TGTTTGACATGATTACCGAAAAAGG 58.557 36.000 0.00 0.00 37.30 3.11
5156 5270 4.695217 TGACATGATTACCGAAAAAGGC 57.305 40.909 0.00 0.00 33.69 4.35
5157 5271 4.331968 TGACATGATTACCGAAAAAGGCT 58.668 39.130 0.00 0.00 33.69 4.58
5158 5272 4.764823 TGACATGATTACCGAAAAAGGCTT 59.235 37.500 0.00 0.00 33.69 4.35
5159 5273 5.242838 TGACATGATTACCGAAAAAGGCTTT 59.757 36.000 6.68 6.68 33.69 3.51
5160 5274 5.709966 ACATGATTACCGAAAAAGGCTTTC 58.290 37.500 13.76 0.41 33.69 2.62
5162 5276 2.691984 TTACCGAAAAAGGCTTTCGC 57.308 45.000 13.76 7.41 46.89 4.70
5172 5286 3.509659 GCTTTCGCCCCGCTTTAT 58.490 55.556 0.00 0.00 0.00 1.40
5173 5287 2.697819 GCTTTCGCCCCGCTTTATA 58.302 52.632 0.00 0.00 0.00 0.98
5174 5288 1.018910 GCTTTCGCCCCGCTTTATAA 58.981 50.000 0.00 0.00 0.00 0.98
5175 5289 1.402613 GCTTTCGCCCCGCTTTATAAA 59.597 47.619 0.00 0.00 0.00 1.40
5176 5290 2.034179 GCTTTCGCCCCGCTTTATAAAT 59.966 45.455 0.00 0.00 0.00 1.40
5177 5291 3.251487 GCTTTCGCCCCGCTTTATAAATA 59.749 43.478 0.00 0.00 0.00 1.40
5178 5292 4.261280 GCTTTCGCCCCGCTTTATAAATAA 60.261 41.667 0.00 0.00 0.00 1.40
5179 5293 5.733937 GCTTTCGCCCCGCTTTATAAATAAA 60.734 40.000 0.00 0.00 0.00 1.40
5190 5304 5.812652 CTTTATAAATAAAGCAACCGCCGA 58.187 37.500 9.01 0.00 41.69 5.54
5191 5305 3.963383 ATAAATAAAGCAACCGCCGAG 57.037 42.857 0.00 0.00 39.83 4.63
5192 5306 0.170339 AAATAAAGCAACCGCCGAGC 59.830 50.000 0.00 0.00 39.83 5.03
5193 5307 0.958382 AATAAAGCAACCGCCGAGCA 60.958 50.000 0.00 0.00 39.83 4.26
5194 5308 1.644786 ATAAAGCAACCGCCGAGCAC 61.645 55.000 0.00 0.00 39.83 4.40
5195 5309 2.997952 TAAAGCAACCGCCGAGCACA 62.998 55.000 0.00 0.00 39.83 4.57
5196 5310 4.927782 AGCAACCGCCGAGCACAA 62.928 61.111 0.00 0.00 39.83 3.33
5197 5311 3.959975 GCAACCGCCGAGCACAAA 61.960 61.111 0.00 0.00 0.00 2.83
5198 5312 2.252260 CAACCGCCGAGCACAAAG 59.748 61.111 0.00 0.00 0.00 2.77
5199 5313 2.203153 AACCGCCGAGCACAAAGT 60.203 55.556 0.00 0.00 0.00 2.66
5200 5314 1.070105 AACCGCCGAGCACAAAGTA 59.930 52.632 0.00 0.00 0.00 2.24
5201 5315 1.226030 AACCGCCGAGCACAAAGTAC 61.226 55.000 0.00 0.00 0.00 2.73
5202 5316 2.388232 CCGCCGAGCACAAAGTACC 61.388 63.158 0.00 0.00 0.00 3.34
5203 5317 1.666553 CGCCGAGCACAAAGTACCA 60.667 57.895 0.00 0.00 0.00 3.25
5204 5318 1.225376 CGCCGAGCACAAAGTACCAA 61.225 55.000 0.00 0.00 0.00 3.67
5205 5319 0.517316 GCCGAGCACAAAGTACCAAG 59.483 55.000 0.00 0.00 0.00 3.61
5206 5320 1.156736 CCGAGCACAAAGTACCAAGG 58.843 55.000 0.00 0.00 0.00 3.61
5207 5321 1.542547 CCGAGCACAAAGTACCAAGGT 60.543 52.381 0.00 0.00 0.00 3.50
5208 5322 2.218603 CGAGCACAAAGTACCAAGGTT 58.781 47.619 0.00 0.00 0.00 3.50
5209 5323 2.223377 CGAGCACAAAGTACCAAGGTTC 59.777 50.000 0.00 0.00 0.00 3.62
5210 5324 2.552743 GAGCACAAAGTACCAAGGTTCC 59.447 50.000 0.00 0.00 0.00 3.62
5211 5325 2.092103 AGCACAAAGTACCAAGGTTCCA 60.092 45.455 0.00 0.00 0.00 3.53
5212 5326 2.691011 GCACAAAGTACCAAGGTTCCAA 59.309 45.455 0.00 0.00 0.00 3.53
5213 5327 3.490249 GCACAAAGTACCAAGGTTCCAAC 60.490 47.826 0.00 0.00 0.00 3.77
5227 5341 4.640789 GTTCCAACCATACAAACACACA 57.359 40.909 0.00 0.00 0.00 3.72
5228 5342 4.356289 GTTCCAACCATACAAACACACAC 58.644 43.478 0.00 0.00 0.00 3.82
5229 5343 2.614520 TCCAACCATACAAACACACACG 59.385 45.455 0.00 0.00 0.00 4.49
5230 5344 2.380660 CAACCATACAAACACACACGC 58.619 47.619 0.00 0.00 0.00 5.34
5231 5345 1.669604 ACCATACAAACACACACGCA 58.330 45.000 0.00 0.00 0.00 5.24
5232 5346 1.332375 ACCATACAAACACACACGCAC 59.668 47.619 0.00 0.00 0.00 5.34
5233 5347 1.332065 CCATACAAACACACACGCACA 59.668 47.619 0.00 0.00 0.00 4.57
5234 5348 2.371432 CATACAAACACACACGCACAC 58.629 47.619 0.00 0.00 0.00 3.82
5235 5349 1.439679 TACAAACACACACGCACACA 58.560 45.000 0.00 0.00 0.00 3.72
5236 5350 0.593618 ACAAACACACACGCACACAA 59.406 45.000 0.00 0.00 0.00 3.33
5237 5351 1.001268 ACAAACACACACGCACACAAA 60.001 42.857 0.00 0.00 0.00 2.83
5238 5352 1.648191 CAAACACACACGCACACAAAG 59.352 47.619 0.00 0.00 0.00 2.77
5239 5353 0.455972 AACACACACGCACACAAAGC 60.456 50.000 0.00 0.00 0.00 3.51
5240 5354 1.586042 CACACACGCACACAAAGCC 60.586 57.895 0.00 0.00 0.00 4.35
5241 5355 2.043405 ACACACGCACACAAAGCCA 61.043 52.632 0.00 0.00 0.00 4.75
5242 5356 1.586042 CACACGCACACAAAGCCAC 60.586 57.895 0.00 0.00 0.00 5.01
5243 5357 2.026014 CACGCACACAAAGCCACC 59.974 61.111 0.00 0.00 0.00 4.61
5244 5358 3.582120 ACGCACACAAAGCCACCG 61.582 61.111 0.00 0.00 0.00 4.94
5245 5359 4.980903 CGCACACAAAGCCACCGC 62.981 66.667 0.00 0.00 0.00 5.68
5246 5360 3.898509 GCACACAAAGCCACCGCA 61.899 61.111 0.00 0.00 37.52 5.69
5247 5361 2.804167 CACACAAAGCCACCGCAA 59.196 55.556 0.00 0.00 37.52 4.85
5248 5362 1.588667 CACACAAAGCCACCGCAAC 60.589 57.895 0.00 0.00 37.52 4.17
5249 5363 2.027460 CACAAAGCCACCGCAACC 59.973 61.111 0.00 0.00 37.52 3.77
5250 5364 2.441164 ACAAAGCCACCGCAACCA 60.441 55.556 0.00 0.00 37.52 3.67
5251 5365 2.336088 CAAAGCCACCGCAACCAG 59.664 61.111 0.00 0.00 37.52 4.00
5252 5366 2.123897 AAAGCCACCGCAACCAGT 60.124 55.556 0.00 0.00 37.52 4.00
5253 5367 2.193536 AAAGCCACCGCAACCAGTC 61.194 57.895 0.00 0.00 37.52 3.51
5254 5368 4.643387 AGCCACCGCAACCAGTCC 62.643 66.667 0.00 0.00 37.52 3.85
5256 5370 4.308458 CCACCGCAACCAGTCCGA 62.308 66.667 0.00 0.00 0.00 4.55
5257 5371 3.041940 CACCGCAACCAGTCCGAC 61.042 66.667 0.00 0.00 0.00 4.79
5258 5372 4.657824 ACCGCAACCAGTCCGACG 62.658 66.667 0.00 0.00 0.00 5.12
5266 5380 4.700365 CAGTCCGACGCGCACAGA 62.700 66.667 5.73 0.00 0.00 3.41
5267 5381 4.702081 AGTCCGACGCGCACAGAC 62.702 66.667 5.73 9.10 0.00 3.51
5268 5382 4.994201 GTCCGACGCGCACAGACA 62.994 66.667 5.73 0.00 0.00 3.41
5269 5383 4.994201 TCCGACGCGCACAGACAC 62.994 66.667 5.73 0.00 0.00 3.67
5271 5385 4.046998 CGACGCGCACAGACACAC 62.047 66.667 5.73 0.00 0.00 3.82
5272 5386 2.959599 GACGCGCACAGACACACA 60.960 61.111 5.73 0.00 0.00 3.72
5273 5387 3.210419 GACGCGCACAGACACACAC 62.210 63.158 5.73 0.00 0.00 3.82
5274 5388 4.339809 CGCGCACAGACACACACG 62.340 66.667 8.75 0.00 0.00 4.49
5275 5389 2.959599 GCGCACAGACACACACGA 60.960 61.111 0.30 0.00 0.00 4.35
5276 5390 2.521771 GCGCACAGACACACACGAA 61.522 57.895 0.30 0.00 0.00 3.85
5277 5391 2.002899 CGCACAGACACACACGAAA 58.997 52.632 0.00 0.00 0.00 3.46
5278 5392 0.315059 CGCACAGACACACACGAAAC 60.315 55.000 0.00 0.00 0.00 2.78
5279 5393 0.027586 GCACAGACACACACGAAACC 59.972 55.000 0.00 0.00 0.00 3.27
5280 5394 0.655733 CACAGACACACACGAAACCC 59.344 55.000 0.00 0.00 0.00 4.11
5281 5395 0.250793 ACAGACACACACGAAACCCA 59.749 50.000 0.00 0.00 0.00 4.51
5282 5396 0.937304 CAGACACACACGAAACCCAG 59.063 55.000 0.00 0.00 0.00 4.45
5283 5397 0.179056 AGACACACACGAAACCCAGG 60.179 55.000 0.00 0.00 0.00 4.45
5284 5398 0.463116 GACACACACGAAACCCAGGT 60.463 55.000 0.00 0.00 0.00 4.00
5285 5399 0.034863 ACACACACGAAACCCAGGTT 60.035 50.000 0.00 0.00 40.45 3.50
5286 5400 0.661020 CACACACGAAACCCAGGTTC 59.339 55.000 1.78 0.00 37.35 3.62
5287 5401 0.253610 ACACACGAAACCCAGGTTCA 59.746 50.000 1.78 0.00 37.35 3.18
5288 5402 0.944386 CACACGAAACCCAGGTTCAG 59.056 55.000 1.78 2.85 37.35 3.02
5289 5403 0.818040 ACACGAAACCCAGGTTCAGC 60.818 55.000 1.78 0.00 37.35 4.26
5290 5404 0.535102 CACGAAACCCAGGTTCAGCT 60.535 55.000 1.78 0.00 37.35 4.24
5291 5405 0.535102 ACGAAACCCAGGTTCAGCTG 60.535 55.000 7.63 7.63 37.35 4.24
5292 5406 0.535102 CGAAACCCAGGTTCAGCTGT 60.535 55.000 14.67 0.00 37.35 4.40
5293 5407 0.954452 GAAACCCAGGTTCAGCTGTG 59.046 55.000 14.67 4.19 37.35 3.66
5294 5408 0.468029 AAACCCAGGTTCAGCTGTGG 60.468 55.000 14.67 13.69 37.35 4.17
5295 5409 2.034687 CCCAGGTTCAGCTGTGGG 59.965 66.667 21.95 21.95 43.83 4.61
5296 5410 2.674380 CCAGGTTCAGCTGTGGGC 60.674 66.667 14.67 2.49 42.19 5.36
5297 5411 2.113774 CAGGTTCAGCTGTGGGCA 59.886 61.111 14.67 0.00 44.79 5.36
5298 5412 2.113986 AGGTTCAGCTGTGGGCAC 59.886 61.111 14.67 4.12 44.79 5.01
5299 5413 2.203337 GGTTCAGCTGTGGGCACA 60.203 61.111 14.67 0.00 44.79 4.57
5307 5421 2.594536 TGTGGGCACAGCTCAACA 59.405 55.556 0.00 0.00 42.30 3.33
5308 5422 1.077140 TGTGGGCACAGCTCAACAA 60.077 52.632 0.00 0.00 42.30 2.83
5309 5423 1.102809 TGTGGGCACAGCTCAACAAG 61.103 55.000 0.00 0.00 42.30 3.16
5318 5432 2.419057 GCTCAACAAGCCCAACACT 58.581 52.632 0.00 0.00 45.92 3.55
5319 5433 0.031178 GCTCAACAAGCCCAACACTG 59.969 55.000 0.00 0.00 45.92 3.66
5320 5434 1.679139 CTCAACAAGCCCAACACTGA 58.321 50.000 0.00 0.00 0.00 3.41
5321 5435 1.605710 CTCAACAAGCCCAACACTGAG 59.394 52.381 0.00 0.00 0.00 3.35
5322 5436 0.670162 CAACAAGCCCAACACTGAGG 59.330 55.000 0.00 0.00 0.00 3.86
5326 5440 3.359002 GCCCAACACTGAGGCAAG 58.641 61.111 0.00 0.00 46.34 4.01
5327 5441 1.228245 GCCCAACACTGAGGCAAGA 60.228 57.895 0.00 0.00 46.34 3.02
5328 5442 1.518903 GCCCAACACTGAGGCAAGAC 61.519 60.000 0.00 0.00 46.34 3.01
5329 5443 0.179020 CCCAACACTGAGGCAAGACA 60.179 55.000 0.00 0.00 0.00 3.41
5330 5444 1.679139 CCAACACTGAGGCAAGACAA 58.321 50.000 0.00 0.00 0.00 3.18
5331 5445 2.023673 CCAACACTGAGGCAAGACAAA 58.976 47.619 0.00 0.00 0.00 2.83
5332 5446 2.223572 CCAACACTGAGGCAAGACAAAC 60.224 50.000 0.00 0.00 0.00 2.93
5333 5447 2.418368 ACACTGAGGCAAGACAAACA 57.582 45.000 0.00 0.00 0.00 2.83
5334 5448 2.017049 ACACTGAGGCAAGACAAACAC 58.983 47.619 0.00 0.00 0.00 3.32
5335 5449 2.016318 CACTGAGGCAAGACAAACACA 58.984 47.619 0.00 0.00 0.00 3.72
5336 5450 2.423185 CACTGAGGCAAGACAAACACAA 59.577 45.455 0.00 0.00 0.00 3.33
5337 5451 2.423538 ACTGAGGCAAGACAAACACAAC 59.576 45.455 0.00 0.00 0.00 3.32
5338 5452 2.423185 CTGAGGCAAGACAAACACAACA 59.577 45.455 0.00 0.00 0.00 3.33
5339 5453 2.163412 TGAGGCAAGACAAACACAACAC 59.837 45.455 0.00 0.00 0.00 3.32
5340 5454 2.163412 GAGGCAAGACAAACACAACACA 59.837 45.455 0.00 0.00 0.00 3.72
5341 5455 2.560542 AGGCAAGACAAACACAACACAA 59.439 40.909 0.00 0.00 0.00 3.33
5342 5456 2.666022 GGCAAGACAAACACAACACAAC 59.334 45.455 0.00 0.00 0.00 3.32
5343 5457 3.312828 GCAAGACAAACACAACACAACA 58.687 40.909 0.00 0.00 0.00 3.33
5344 5458 3.925913 GCAAGACAAACACAACACAACAT 59.074 39.130 0.00 0.00 0.00 2.71
5345 5459 4.201608 GCAAGACAAACACAACACAACATG 60.202 41.667 0.00 0.00 0.00 3.21
5346 5460 4.108699 AGACAAACACAACACAACATGG 57.891 40.909 0.00 0.00 0.00 3.66
5347 5461 2.602660 GACAAACACAACACAACATGGC 59.397 45.455 0.00 0.00 0.00 4.40
5348 5462 2.028658 ACAAACACAACACAACATGGCA 60.029 40.909 0.00 0.00 0.00 4.92
5349 5463 3.196463 CAAACACAACACAACATGGCAT 58.804 40.909 0.00 0.00 0.00 4.40
5350 5464 2.512485 ACACAACACAACATGGCATG 57.488 45.000 25.31 25.31 0.00 4.06
5351 5465 2.030371 ACACAACACAACATGGCATGA 58.970 42.857 32.74 0.00 0.00 3.07
5352 5466 2.629137 ACACAACACAACATGGCATGAT 59.371 40.909 32.74 19.64 0.00 2.45
5353 5467 3.069872 ACACAACACAACATGGCATGATT 59.930 39.130 32.74 19.45 0.00 2.57
5354 5468 4.280425 ACACAACACAACATGGCATGATTA 59.720 37.500 32.74 0.00 0.00 1.75
5355 5469 5.221402 ACACAACACAACATGGCATGATTAA 60.221 36.000 32.74 0.00 0.00 1.40
5356 5470 5.346551 CACAACACAACATGGCATGATTAAG 59.653 40.000 32.74 19.03 0.00 1.85
5357 5471 4.724074 ACACAACATGGCATGATTAAGG 57.276 40.909 32.74 17.82 0.00 2.69
5358 5472 3.119029 ACACAACATGGCATGATTAAGGC 60.119 43.478 32.74 0.00 0.00 4.35
5359 5473 3.098377 ACAACATGGCATGATTAAGGCA 58.902 40.909 32.74 0.00 44.70 4.75
5360 5474 3.119029 ACAACATGGCATGATTAAGGCAC 60.119 43.478 32.74 0.00 43.36 5.01
5361 5475 2.737544 ACATGGCATGATTAAGGCACA 58.262 42.857 32.74 0.00 43.36 4.57
5362 5476 2.691526 ACATGGCATGATTAAGGCACAG 59.308 45.455 32.74 2.72 43.36 3.66
5363 5477 1.766494 TGGCATGATTAAGGCACAGG 58.234 50.000 0.00 0.00 35.21 4.00
5380 5494 7.922382 AGGCACAGGCAGACTATAAATAATAT 58.078 34.615 0.00 0.00 43.71 1.28
5381 5495 9.046846 AGGCACAGGCAGACTATAAATAATATA 57.953 33.333 0.00 0.00 43.71 0.86
5430 5544 4.193826 TCACAAGAACTGTCATCCTAGC 57.806 45.455 0.00 0.00 35.47 3.42
5470 5584 6.859017 TGTTTAAGTGGAAACAAAGAGGAAC 58.141 36.000 0.00 0.00 44.30 3.62
5474 5588 6.694877 AAGTGGAAACAAAGAGGAACTTAC 57.305 37.500 0.00 0.00 46.06 2.34
5487 5601 8.966069 AAGAGGAACTTACCTTTCTTATATGC 57.034 34.615 0.00 0.00 41.55 3.14
5545 5659 0.972983 AGGATGTCCAGGTGGAGTCG 60.973 60.000 0.00 0.00 46.49 4.18
5672 5787 9.462606 ACCTTTAATAACTGACAAATAGGGAAG 57.537 33.333 0.00 0.00 0.00 3.46
5737 5852 0.326595 TTATCTCCTTTGTGCCGCCA 59.673 50.000 0.00 0.00 0.00 5.69
5766 5881 2.763215 GACAATGGCCCACCTCCA 59.237 61.111 0.00 0.00 38.09 3.86
5800 5915 8.352201 GCCATGAAAATATGTATAGAAGCAACA 58.648 33.333 0.00 0.00 0.00 3.33
5843 5958 0.618458 TGCCCACCTTCACCAGATAC 59.382 55.000 0.00 0.00 0.00 2.24
5877 5992 5.992829 TCTAATTTGCTTGTCGTAACCTTCA 59.007 36.000 0.00 0.00 0.00 3.02
5916 6031 3.552273 GGGCTTGTGCATGAATCATGATC 60.552 47.826 25.77 16.69 43.81 2.92
6045 6161 5.181690 CAATGGTAATAACATTGTCGGGG 57.818 43.478 19.84 0.00 46.19 5.73
6047 6163 4.304048 TGGTAATAACATTGTCGGGGTT 57.696 40.909 0.00 0.00 0.00 4.11
6048 6164 4.263435 TGGTAATAACATTGTCGGGGTTC 58.737 43.478 0.00 0.00 0.00 3.62
6049 6165 4.019141 TGGTAATAACATTGTCGGGGTTCT 60.019 41.667 0.00 0.00 0.00 3.01
6050 6166 5.189342 TGGTAATAACATTGTCGGGGTTCTA 59.811 40.000 0.00 0.00 0.00 2.10
6051 6167 6.126710 TGGTAATAACATTGTCGGGGTTCTAT 60.127 38.462 0.00 0.00 0.00 1.98
6219 6335 5.470098 GCAAGTAATTGAGTCTGTTCAAGGA 59.530 40.000 7.18 0.00 40.16 3.36
6379 6495 6.815641 TGACAGAGATTCATCTTTACAGAAGC 59.184 38.462 0.00 0.00 37.25 3.86
7083 8736 0.816825 CCGGTTGATGCCCAGATCAG 60.817 60.000 0.00 0.00 33.86 2.90
7413 9075 4.402474 CACTTTCAGTTCCTCTTGGGTTTT 59.598 41.667 0.00 0.00 36.25 2.43
7494 9983 8.535690 CGGAGGAAAATAGATATAAGTTCCAC 57.464 38.462 12.47 7.73 37.57 4.02
7829 10319 1.142965 CCGCGGACATACATGGACA 59.857 57.895 24.07 0.00 0.00 4.02
7982 10797 7.094377 GGACTACCAAAAATTGACATGCTCTAA 60.094 37.037 0.00 0.00 35.97 2.10
7983 10798 8.353423 ACTACCAAAAATTGACATGCTCTAAT 57.647 30.769 0.00 0.00 0.00 1.73
7986 10801 8.986477 ACCAAAAATTGACATGCTCTAATAAC 57.014 30.769 0.00 0.00 0.00 1.89
7988 10803 9.643693 CCAAAAATTGACATGCTCTAATAACTT 57.356 29.630 0.00 0.00 0.00 2.66
7991 10806 7.849804 AATTGACATGCTCTAATAACTTCGT 57.150 32.000 0.00 0.00 0.00 3.85
7993 10808 9.547753 AATTGACATGCTCTAATAACTTCGTAT 57.452 29.630 0.00 0.00 0.00 3.06
7994 10809 8.575565 TTGACATGCTCTAATAACTTCGTATC 57.424 34.615 0.00 0.00 0.00 2.24
7995 10810 7.941919 TGACATGCTCTAATAACTTCGTATCT 58.058 34.615 0.00 0.00 0.00 1.98
8001 10816 9.512435 TGCTCTAATAACTTCGTATCTAAACAC 57.488 33.333 0.00 0.00 0.00 3.32
8002 10817 9.512435 GCTCTAATAACTTCGTATCTAAACACA 57.488 33.333 0.00 0.00 0.00 3.72
8007 10822 9.647797 AATAACTTCGTATCTAAACACATGTCA 57.352 29.630 0.00 0.00 0.00 3.58
8009 10824 8.547967 AACTTCGTATCTAAACACATGTCATT 57.452 30.769 0.00 0.00 0.00 2.57
8010 10825 7.963981 ACTTCGTATCTAAACACATGTCATTG 58.036 34.615 0.00 0.00 0.00 2.82
8011 10826 6.902224 TCGTATCTAAACACATGTCATTGG 57.098 37.500 0.00 0.00 0.00 3.16
8012 10827 6.635755 TCGTATCTAAACACATGTCATTGGA 58.364 36.000 0.00 1.86 0.00 3.53
8013 10828 6.533723 TCGTATCTAAACACATGTCATTGGAC 59.466 38.462 0.00 0.00 44.57 4.02
8015 10830 7.704899 CGTATCTAAACACATGTCATTGGACTA 59.295 37.037 0.00 0.00 44.61 2.59
8016 10831 7.849804 ATCTAAACACATGTCATTGGACTAC 57.150 36.000 0.00 0.00 44.61 2.73
8017 10832 6.170506 TCTAAACACATGTCATTGGACTACC 58.829 40.000 0.00 0.00 44.61 3.18
8018 10833 4.365514 AACACATGTCATTGGACTACCA 57.634 40.909 0.00 0.00 44.61 3.25
8031 10846 5.132897 TGGACTACCAAAAATTGACATGC 57.867 39.130 0.00 0.00 43.91 4.06
8032 10847 4.832266 TGGACTACCAAAAATTGACATGCT 59.168 37.500 0.00 0.00 43.91 3.79
8033 10848 5.048083 TGGACTACCAAAAATTGACATGCTC 60.048 40.000 0.00 0.00 43.91 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.204941 ACCATCGAAGTCTACCACTGC 59.795 52.381 0.00 0.00 34.56 4.40
1 2 2.492088 TGACCATCGAAGTCTACCACTG 59.508 50.000 16.98 0.00 34.56 3.66
12 13 1.811965 CTGCCAAATGTGACCATCGAA 59.188 47.619 0.00 0.00 0.00 3.71
15 16 2.163010 CACTCTGCCAAATGTGACCATC 59.837 50.000 0.00 0.00 32.72 3.51
47 48 1.207791 ATTCATCTTCCCGCCACTCT 58.792 50.000 0.00 0.00 0.00 3.24
82 83 2.821366 CACCACAGCATCGCCCTC 60.821 66.667 0.00 0.00 0.00 4.30
93 94 0.327924 CTAGGGTCATTGGCACCACA 59.672 55.000 0.00 0.00 35.35 4.17
95 97 0.548926 TCCTAGGGTCATTGGCACCA 60.549 55.000 9.46 0.00 35.35 4.17
108 110 2.525381 AGCTCCGCCCATCCTAGG 60.525 66.667 0.82 0.82 0.00 3.02
118 120 4.129737 TACTCGCCACAGCTCCGC 62.130 66.667 0.00 0.00 36.60 5.54
119 121 2.202623 GTACTCGCCACAGCTCCG 60.203 66.667 0.00 0.00 36.60 4.63
120 122 2.184579 GGTACTCGCCACAGCTCC 59.815 66.667 0.00 0.00 36.60 4.70
121 123 2.970639 TGGTACTCGCCACAGCTC 59.029 61.111 0.00 0.00 36.60 4.09
138 140 2.733227 CGTCGGCGACTAAATTACCAGT 60.733 50.000 33.90 0.00 41.33 4.00
139 141 1.850441 CGTCGGCGACTAAATTACCAG 59.150 52.381 33.90 13.38 41.33 4.00
140 142 1.202114 ACGTCGGCGACTAAATTACCA 59.798 47.619 33.90 0.00 42.00 3.25
141 143 1.848608 GACGTCGGCGACTAAATTACC 59.151 52.381 33.90 8.32 42.00 2.85
142 144 2.277316 GTGACGTCGGCGACTAAATTAC 59.723 50.000 33.90 19.88 42.00 1.89
146 148 0.311790 AAGTGACGTCGGCGACTAAA 59.688 50.000 33.90 18.09 42.00 1.85
155 157 2.058798 ACAGTTATGCAAGTGACGTCG 58.941 47.619 11.62 0.00 38.30 5.12
156 158 3.363970 CCAACAGTTATGCAAGTGACGTC 60.364 47.826 9.11 9.11 38.30 4.34
159 161 3.815401 ACTCCAACAGTTATGCAAGTGAC 59.185 43.478 0.00 0.00 38.30 3.67
167 169 2.259618 CGGTCGACTCCAACAGTTATG 58.740 52.381 16.46 0.00 34.41 1.90
169 171 0.038892 GCGGTCGACTCCAACAGTTA 60.039 55.000 16.46 0.00 34.41 2.24
173 181 3.263503 CTCGCGGTCGACTCCAACA 62.264 63.158 16.46 0.00 40.21 3.33
176 184 3.125573 CTCTCGCGGTCGACTCCA 61.126 66.667 16.46 0.00 40.21 3.86
180 188 1.226073 GAACTCTCTCGCGGTCGAC 60.226 63.158 7.13 7.13 40.21 4.20
181 189 2.396955 GGAACTCTCTCGCGGTCGA 61.397 63.158 6.13 0.00 43.28 4.20
182 190 2.100603 GGAACTCTCTCGCGGTCG 59.899 66.667 6.13 0.00 0.00 4.79
213 221 7.817418 TTTTCAACAATGTATAGGGATAGGC 57.183 36.000 0.00 0.00 0.00 3.93
241 264 7.700022 ACCGTGTTTTAGTTAGAGAGAGTAT 57.300 36.000 0.00 0.00 0.00 2.12
243 266 7.700022 ATACCGTGTTTTAGTTAGAGAGAGT 57.300 36.000 0.00 0.00 0.00 3.24
244 267 8.891720 ACTATACCGTGTTTTAGTTAGAGAGAG 58.108 37.037 0.00 0.00 0.00 3.20
246 269 8.671921 TGACTATACCGTGTTTTAGTTAGAGAG 58.328 37.037 0.00 0.00 0.00 3.20
329 352 4.320567 CCACTGGTGTCTATGATACTAGCG 60.321 50.000 7.49 0.04 36.17 4.26
385 411 2.514824 GCTCCCGGAATCTGCCAC 60.515 66.667 0.73 0.00 0.00 5.01
389 415 3.878667 GGGGGCTCCCGGAATCTG 61.879 72.222 5.46 0.00 46.66 2.90
849 876 1.774217 GCCATATGTGGGGGAGGGA 60.774 63.158 10.87 0.00 46.14 4.20
850 877 2.084300 TGCCATATGTGGGGGAGGG 61.084 63.158 10.87 0.00 46.14 4.30
949 976 2.045242 CAGGATGCTGCTGGTGCT 60.045 61.111 0.00 0.00 40.48 4.40
950 977 2.045634 TCAGGATGCTGCTGGTGC 60.046 61.111 9.76 0.00 36.40 5.01
953 980 2.513204 CGGTCAGGATGCTGCTGG 60.513 66.667 9.76 0.00 36.40 4.85
959 986 4.778143 AACCCGCGGTCAGGATGC 62.778 66.667 26.12 0.00 33.12 3.91
960 987 2.819595 CAACCCGCGGTCAGGATG 60.820 66.667 26.12 9.74 33.12 3.51
965 992 4.612412 GTCACCAACCCGCGGTCA 62.612 66.667 26.12 0.00 33.12 4.02
1246 1273 2.363018 TCGCTGGGTCTCCTCTGG 60.363 66.667 0.00 0.00 0.00 3.86
1255 1282 4.681978 GGAACGTGCTCGCTGGGT 62.682 66.667 8.29 0.00 41.18 4.51
1269 1296 4.924305 AGTATGATAACGCTTACCGGAA 57.076 40.909 9.46 0.00 42.52 4.30
1280 1307 7.681939 TTGGTTCCAAGTGAAGTATGATAAC 57.318 36.000 0.00 0.00 32.37 1.89
1344 1371 6.147821 AGACAGGAACAAAATCACGATGTAAG 59.852 38.462 0.00 0.00 0.00 2.34
1366 1393 0.514691 CGACAAGCCAAAGCAGAGAC 59.485 55.000 0.00 0.00 43.56 3.36
1451 1478 6.804295 CAGAGAATATAAGGTTAGCGTGCTAG 59.196 42.308 1.39 0.00 0.00 3.42
1469 1496 1.306148 TCGCCGATCGTACAGAGAAT 58.694 50.000 15.09 0.00 39.67 2.40
1484 1511 0.039165 CAAAGCTGGGAAACTTCGCC 60.039 55.000 4.28 0.00 39.17 5.54
1590 1621 1.398390 CGTCTTGTTGGATTAGCAGGC 59.602 52.381 0.00 0.00 0.00 4.85
1592 1623 2.972625 TCCGTCTTGTTGGATTAGCAG 58.027 47.619 0.00 0.00 0.00 4.24
1740 1787 8.679100 CAACCAATATTTTCCAATCATTTGCAT 58.321 29.630 0.00 0.00 0.00 3.96
1793 1840 0.531311 GTAATTGGCGAGTACCCCCG 60.531 60.000 0.81 0.00 0.00 5.73
1913 1961 5.394883 GCAGTATACAGCACTGGGTAAAGTA 60.395 44.000 14.75 0.00 42.99 2.24
2255 2316 7.216494 AGCCATAAAGTTTGTTAACTGCAATT 58.784 30.769 7.22 0.00 43.74 2.32
2284 2345 7.312899 ACTTCATGAACGGAAAATATGTTTCC 58.687 34.615 3.38 14.52 43.38 3.13
2303 2364 4.159693 TGTGACAAGCGATACCTACTTCAT 59.840 41.667 0.00 0.00 0.00 2.57
2308 2369 7.650504 TGTAAATATGTGACAAGCGATACCTAC 59.349 37.037 0.00 0.00 0.00 3.18
2347 2408 6.370994 CCTATGAATCATCCATGCAGTCTAAC 59.629 42.308 0.00 0.00 0.00 2.34
2356 2417 8.859236 ATACAGTTTCCTATGAATCATCCATG 57.141 34.615 0.00 0.00 0.00 3.66
2399 2460 8.470002 AGAACATAAATAAGAAAGGAATGCCAC 58.530 33.333 0.00 0.00 36.29 5.01
2425 2486 6.601613 CAGTATTGTAAGGGAAATACAGCCAA 59.398 38.462 7.94 0.00 40.29 4.52
2427 2488 5.008712 GCAGTATTGTAAGGGAAATACAGCC 59.991 44.000 10.19 0.00 41.86 4.85
2430 2491 8.052748 AGAATGCAGTATTGTAAGGGAAATACA 58.947 33.333 7.94 0.00 40.29 2.29
2961 3022 7.716612 TCTTCTTCGATGTCATTATAAGCTCA 58.283 34.615 0.00 0.00 0.00 4.26
3039 3104 9.868277 ACATAAAAGAAACACAATCAACAGAAA 57.132 25.926 0.00 0.00 0.00 2.52
3040 3105 9.515020 GACATAAAAGAAACACAATCAACAGAA 57.485 29.630 0.00 0.00 0.00 3.02
3044 3109 8.627487 TGTGACATAAAAGAAACACAATCAAC 57.373 30.769 0.00 0.00 35.77 3.18
3264 3329 4.631377 CCTTCATTGCAAATCTGAGTACGA 59.369 41.667 1.71 0.00 0.00 3.43
3552 3617 1.246737 CCTTGCCAGAAACTCCCTGC 61.247 60.000 0.00 0.00 0.00 4.85
3819 3884 2.762327 TCCGTTACCAGCTACCTTTAGG 59.238 50.000 0.00 0.00 42.17 2.69
3837 3902 3.539604 AGAAGCTTCATTGGATTCTCCG 58.460 45.455 27.57 0.00 40.17 4.63
4017 4082 5.883685 TCTGAGAGTTATCATCAGCCAAT 57.116 39.130 0.00 0.00 40.22 3.16
4315 4381 7.939039 AGAGGACTAGATTGTCAAATTGAACAA 59.061 33.333 0.00 5.46 38.61 2.83
4561 4627 6.633500 TTAGAATTCAACAGGAACAAGTGG 57.367 37.500 8.44 0.00 38.60 4.00
4816 4930 6.906157 ACAATCAACAGTTCATCATCCTTT 57.094 33.333 0.00 0.00 0.00 3.11
4868 4982 8.446599 TCAAGTTAACCTAAACTGAAGAAAGG 57.553 34.615 0.88 0.00 39.62 3.11
4899 5013 5.073428 TGCACCCTGAACAACATTATGTAA 58.927 37.500 0.00 0.00 32.02 2.41
4905 5019 2.964464 TGAATGCACCCTGAACAACATT 59.036 40.909 0.00 0.00 0.00 2.71
5040 5154 6.146184 GGTGCACTGTGTATATTGTATAGCTG 59.854 42.308 17.98 0.00 0.00 4.24
5078 5192 1.497722 GCGAACTTCAGGGCTTTCG 59.502 57.895 0.00 0.00 42.91 3.46
5156 5270 3.982576 ATTTATAAAGCGGGGCGAAAG 57.017 42.857 3.94 0.00 0.00 2.62
5157 5271 5.823353 CTTTATTTATAAAGCGGGGCGAAA 58.177 37.500 8.78 0.00 41.69 3.46
5158 5272 5.427036 CTTTATTTATAAAGCGGGGCGAA 57.573 39.130 8.78 0.00 41.69 4.70
5168 5282 5.731126 GCTCGGCGGTTGCTTTATTTATAAA 60.731 40.000 7.21 0.00 42.25 1.40
5169 5283 4.260866 GCTCGGCGGTTGCTTTATTTATAA 60.261 41.667 7.21 0.00 42.25 0.98
5170 5284 3.249080 GCTCGGCGGTTGCTTTATTTATA 59.751 43.478 7.21 0.00 42.25 0.98
5171 5285 2.032924 GCTCGGCGGTTGCTTTATTTAT 59.967 45.455 7.21 0.00 42.25 1.40
5172 5286 1.399089 GCTCGGCGGTTGCTTTATTTA 59.601 47.619 7.21 0.00 42.25 1.40
5173 5287 0.170339 GCTCGGCGGTTGCTTTATTT 59.830 50.000 7.21 0.00 42.25 1.40
5174 5288 0.958382 TGCTCGGCGGTTGCTTTATT 60.958 50.000 7.21 0.00 42.25 1.40
5175 5289 1.376683 TGCTCGGCGGTTGCTTTAT 60.377 52.632 7.21 0.00 42.25 1.40
5176 5290 2.031314 TGCTCGGCGGTTGCTTTA 59.969 55.556 7.21 0.00 42.25 1.85
5177 5291 3.660111 GTGCTCGGCGGTTGCTTT 61.660 61.111 7.21 0.00 42.25 3.51
5178 5292 4.927782 TGTGCTCGGCGGTTGCTT 62.928 61.111 7.21 0.00 42.25 3.91
5179 5293 4.927782 TTGTGCTCGGCGGTTGCT 62.928 61.111 7.21 0.00 42.25 3.91
5180 5294 3.879351 CTTTGTGCTCGGCGGTTGC 62.879 63.158 7.21 10.25 41.71 4.17
5181 5295 1.225376 TACTTTGTGCTCGGCGGTTG 61.225 55.000 7.21 0.00 0.00 3.77
5182 5296 1.070105 TACTTTGTGCTCGGCGGTT 59.930 52.632 7.21 0.00 0.00 4.44
5183 5297 1.666872 GTACTTTGTGCTCGGCGGT 60.667 57.895 7.21 0.00 0.00 5.68
5184 5298 2.388232 GGTACTTTGTGCTCGGCGG 61.388 63.158 7.21 0.00 0.00 6.13
5185 5299 1.225376 TTGGTACTTTGTGCTCGGCG 61.225 55.000 0.00 0.00 0.00 6.46
5186 5300 0.517316 CTTGGTACTTTGTGCTCGGC 59.483 55.000 0.00 0.00 0.00 5.54
5187 5301 1.156736 CCTTGGTACTTTGTGCTCGG 58.843 55.000 0.00 0.00 0.00 4.63
5188 5302 1.878953 ACCTTGGTACTTTGTGCTCG 58.121 50.000 0.00 0.00 0.00 5.03
5189 5303 2.552743 GGAACCTTGGTACTTTGTGCTC 59.447 50.000 0.00 0.00 0.00 4.26
5190 5304 2.092103 TGGAACCTTGGTACTTTGTGCT 60.092 45.455 0.00 0.00 0.00 4.40
5191 5305 2.303175 TGGAACCTTGGTACTTTGTGC 58.697 47.619 0.00 0.00 0.00 4.57
5192 5306 3.067601 GGTTGGAACCTTGGTACTTTGTG 59.932 47.826 0.98 0.00 45.75 3.33
5193 5307 3.293337 GGTTGGAACCTTGGTACTTTGT 58.707 45.455 0.98 0.00 45.75 2.83
5206 5320 4.356289 GTGTGTGTTTGTATGGTTGGAAC 58.644 43.478 0.00 0.00 0.00 3.62
5207 5321 3.065510 CGTGTGTGTTTGTATGGTTGGAA 59.934 43.478 0.00 0.00 0.00 3.53
5208 5322 2.614520 CGTGTGTGTTTGTATGGTTGGA 59.385 45.455 0.00 0.00 0.00 3.53
5209 5323 2.856720 GCGTGTGTGTTTGTATGGTTGG 60.857 50.000 0.00 0.00 0.00 3.77
5210 5324 2.223363 TGCGTGTGTGTTTGTATGGTTG 60.223 45.455 0.00 0.00 0.00 3.77
5211 5325 2.017782 TGCGTGTGTGTTTGTATGGTT 58.982 42.857 0.00 0.00 0.00 3.67
5212 5326 1.332375 GTGCGTGTGTGTTTGTATGGT 59.668 47.619 0.00 0.00 0.00 3.55
5213 5327 1.332065 TGTGCGTGTGTGTTTGTATGG 59.668 47.619 0.00 0.00 0.00 2.74
5214 5328 2.223135 TGTGTGCGTGTGTGTTTGTATG 60.223 45.455 0.00 0.00 0.00 2.39
5215 5329 2.010497 TGTGTGCGTGTGTGTTTGTAT 58.990 42.857 0.00 0.00 0.00 2.29
5216 5330 1.439679 TGTGTGCGTGTGTGTTTGTA 58.560 45.000 0.00 0.00 0.00 2.41
5217 5331 0.593618 TTGTGTGCGTGTGTGTTTGT 59.406 45.000 0.00 0.00 0.00 2.83
5218 5332 1.648191 CTTTGTGTGCGTGTGTGTTTG 59.352 47.619 0.00 0.00 0.00 2.93
5219 5333 1.975837 CTTTGTGTGCGTGTGTGTTT 58.024 45.000 0.00 0.00 0.00 2.83
5220 5334 0.455972 GCTTTGTGTGCGTGTGTGTT 60.456 50.000 0.00 0.00 0.00 3.32
5221 5335 1.136565 GCTTTGTGTGCGTGTGTGT 59.863 52.632 0.00 0.00 0.00 3.72
5222 5336 1.586042 GGCTTTGTGTGCGTGTGTG 60.586 57.895 0.00 0.00 0.00 3.82
5223 5337 2.043405 TGGCTTTGTGTGCGTGTGT 61.043 52.632 0.00 0.00 0.00 3.72
5224 5338 1.586042 GTGGCTTTGTGTGCGTGTG 60.586 57.895 0.00 0.00 0.00 3.82
5225 5339 2.770589 GGTGGCTTTGTGTGCGTGT 61.771 57.895 0.00 0.00 0.00 4.49
5226 5340 2.026014 GGTGGCTTTGTGTGCGTG 59.974 61.111 0.00 0.00 0.00 5.34
5227 5341 3.582120 CGGTGGCTTTGTGTGCGT 61.582 61.111 0.00 0.00 0.00 5.24
5228 5342 4.980903 GCGGTGGCTTTGTGTGCG 62.981 66.667 0.00 0.00 35.83 5.34
5229 5343 3.423162 TTGCGGTGGCTTTGTGTGC 62.423 57.895 0.00 0.00 40.82 4.57
5230 5344 1.588667 GTTGCGGTGGCTTTGTGTG 60.589 57.895 0.00 0.00 40.82 3.82
5231 5345 2.781158 GGTTGCGGTGGCTTTGTGT 61.781 57.895 0.00 0.00 40.82 3.72
5232 5346 2.027460 GGTTGCGGTGGCTTTGTG 59.973 61.111 0.00 0.00 40.82 3.33
5233 5347 2.441164 TGGTTGCGGTGGCTTTGT 60.441 55.556 0.00 0.00 40.82 2.83
5234 5348 2.336088 CTGGTTGCGGTGGCTTTG 59.664 61.111 0.00 0.00 40.82 2.77
5235 5349 2.123897 ACTGGTTGCGGTGGCTTT 60.124 55.556 0.00 0.00 40.82 3.51
5236 5350 2.594592 GACTGGTTGCGGTGGCTT 60.595 61.111 0.00 0.00 40.82 4.35
5237 5351 4.643387 GGACTGGTTGCGGTGGCT 62.643 66.667 0.00 0.00 40.82 4.75
5239 5353 4.308458 TCGGACTGGTTGCGGTGG 62.308 66.667 0.00 0.00 40.02 4.61
5240 5354 3.041940 GTCGGACTGGTTGCGGTG 61.042 66.667 0.00 0.00 40.02 4.94
5241 5355 4.657824 CGTCGGACTGGTTGCGGT 62.658 66.667 6.57 0.00 40.02 5.68
5252 5366 4.994201 GTGTCTGTGCGCGTCGGA 62.994 66.667 8.43 9.43 0.00 4.55
5254 5368 4.046998 GTGTGTCTGTGCGCGTCG 62.047 66.667 8.43 0.00 0.00 5.12
5255 5369 2.959599 TGTGTGTCTGTGCGCGTC 60.960 61.111 8.43 0.00 0.00 5.19
5256 5370 3.261951 GTGTGTGTCTGTGCGCGT 61.262 61.111 8.43 0.00 0.00 6.01
5257 5371 4.339809 CGTGTGTGTCTGTGCGCG 62.340 66.667 0.00 0.00 0.00 6.86
5258 5372 2.031044 TTTCGTGTGTGTCTGTGCGC 62.031 55.000 0.00 0.00 0.00 6.09
5259 5373 0.315059 GTTTCGTGTGTGTCTGTGCG 60.315 55.000 0.00 0.00 0.00 5.34
5260 5374 0.027586 GGTTTCGTGTGTGTCTGTGC 59.972 55.000 0.00 0.00 0.00 4.57
5261 5375 0.655733 GGGTTTCGTGTGTGTCTGTG 59.344 55.000 0.00 0.00 0.00 3.66
5262 5376 0.250793 TGGGTTTCGTGTGTGTCTGT 59.749 50.000 0.00 0.00 0.00 3.41
5263 5377 0.937304 CTGGGTTTCGTGTGTGTCTG 59.063 55.000 0.00 0.00 0.00 3.51
5264 5378 0.179056 CCTGGGTTTCGTGTGTGTCT 60.179 55.000 0.00 0.00 0.00 3.41
5265 5379 0.463116 ACCTGGGTTTCGTGTGTGTC 60.463 55.000 0.00 0.00 0.00 3.67
5266 5380 0.034863 AACCTGGGTTTCGTGTGTGT 60.035 50.000 0.00 0.00 34.22 3.72
5267 5381 0.661020 GAACCTGGGTTTCGTGTGTG 59.339 55.000 6.46 0.00 38.60 3.82
5268 5382 0.253610 TGAACCTGGGTTTCGTGTGT 59.746 50.000 6.46 0.00 38.60 3.72
5269 5383 0.944386 CTGAACCTGGGTTTCGTGTG 59.056 55.000 6.46 0.00 38.60 3.82
5270 5384 0.818040 GCTGAACCTGGGTTTCGTGT 60.818 55.000 6.46 0.00 38.60 4.49
5271 5385 0.535102 AGCTGAACCTGGGTTTCGTG 60.535 55.000 6.46 0.00 38.60 4.35
5272 5386 0.535102 CAGCTGAACCTGGGTTTCGT 60.535 55.000 8.42 0.00 38.60 3.85
5273 5387 0.535102 ACAGCTGAACCTGGGTTTCG 60.535 55.000 23.35 2.67 38.60 3.46
5274 5388 0.954452 CACAGCTGAACCTGGGTTTC 59.046 55.000 23.35 0.00 38.60 2.78
5275 5389 0.468029 CCACAGCTGAACCTGGGTTT 60.468 55.000 23.35 0.00 38.60 3.27
5276 5390 1.151450 CCACAGCTGAACCTGGGTT 59.849 57.895 23.35 4.52 41.54 4.11
5277 5391 2.833913 CCCACAGCTGAACCTGGGT 61.834 63.158 25.29 0.00 38.92 4.51
5278 5392 2.034687 CCCACAGCTGAACCTGGG 59.965 66.667 23.35 22.51 37.61 4.45
5279 5393 2.674380 GCCCACAGCTGAACCTGG 60.674 66.667 23.35 17.30 38.99 4.45
5280 5394 2.113774 TGCCCACAGCTGAACCTG 59.886 61.111 23.35 8.00 44.23 4.00
5281 5395 2.113986 GTGCCCACAGCTGAACCT 59.886 61.111 23.35 0.00 44.23 3.50
5282 5396 2.203337 TGTGCCCACAGCTGAACC 60.203 61.111 23.35 6.11 44.23 3.62
5290 5404 1.077140 TTGTTGAGCTGTGCCCACA 60.077 52.632 0.00 0.71 39.32 4.17
5291 5405 1.656441 CTTGTTGAGCTGTGCCCAC 59.344 57.895 0.00 0.00 0.00 4.61
5292 5406 4.162592 CTTGTTGAGCTGTGCCCA 57.837 55.556 0.00 0.00 0.00 5.36
5301 5415 1.605710 CTCAGTGTTGGGCTTGTTGAG 59.394 52.381 0.00 0.00 0.00 3.02
5302 5416 1.679139 CTCAGTGTTGGGCTTGTTGA 58.321 50.000 0.00 0.00 0.00 3.18
5303 5417 0.670162 CCTCAGTGTTGGGCTTGTTG 59.330 55.000 0.00 0.00 0.00 3.33
5304 5418 1.109323 GCCTCAGTGTTGGGCTTGTT 61.109 55.000 14.07 0.00 42.31 2.83
5305 5419 1.529244 GCCTCAGTGTTGGGCTTGT 60.529 57.895 14.07 0.00 42.31 3.16
5306 5420 1.108727 TTGCCTCAGTGTTGGGCTTG 61.109 55.000 19.19 0.00 45.45 4.01
5307 5421 0.825010 CTTGCCTCAGTGTTGGGCTT 60.825 55.000 19.19 0.00 45.45 4.35
5308 5422 1.228367 CTTGCCTCAGTGTTGGGCT 60.228 57.895 19.19 0.00 45.45 5.19
5309 5423 1.228245 TCTTGCCTCAGTGTTGGGC 60.228 57.895 14.33 14.33 45.45 5.36
5310 5424 0.179020 TGTCTTGCCTCAGTGTTGGG 60.179 55.000 6.97 2.19 0.00 4.12
5311 5425 1.679139 TTGTCTTGCCTCAGTGTTGG 58.321 50.000 0.00 0.00 0.00 3.77
5312 5426 2.423185 TGTTTGTCTTGCCTCAGTGTTG 59.577 45.455 0.00 0.00 0.00 3.33
5313 5427 2.423538 GTGTTTGTCTTGCCTCAGTGTT 59.576 45.455 0.00 0.00 0.00 3.32
5314 5428 2.017049 GTGTTTGTCTTGCCTCAGTGT 58.983 47.619 0.00 0.00 0.00 3.55
5315 5429 2.016318 TGTGTTTGTCTTGCCTCAGTG 58.984 47.619 0.00 0.00 0.00 3.66
5316 5430 2.418368 TGTGTTTGTCTTGCCTCAGT 57.582 45.000 0.00 0.00 0.00 3.41
5317 5431 2.423185 TGTTGTGTTTGTCTTGCCTCAG 59.577 45.455 0.00 0.00 0.00 3.35
5318 5432 2.163412 GTGTTGTGTTTGTCTTGCCTCA 59.837 45.455 0.00 0.00 0.00 3.86
5319 5433 2.163412 TGTGTTGTGTTTGTCTTGCCTC 59.837 45.455 0.00 0.00 0.00 4.70
5320 5434 2.166829 TGTGTTGTGTTTGTCTTGCCT 58.833 42.857 0.00 0.00 0.00 4.75
5321 5435 2.645730 TGTGTTGTGTTTGTCTTGCC 57.354 45.000 0.00 0.00 0.00 4.52
5322 5436 3.312828 TGTTGTGTTGTGTTTGTCTTGC 58.687 40.909 0.00 0.00 0.00 4.01
5323 5437 4.326817 CCATGTTGTGTTGTGTTTGTCTTG 59.673 41.667 0.00 0.00 0.00 3.02
5324 5438 4.493547 CCATGTTGTGTTGTGTTTGTCTT 58.506 39.130 0.00 0.00 0.00 3.01
5325 5439 3.675775 GCCATGTTGTGTTGTGTTTGTCT 60.676 43.478 0.00 0.00 0.00 3.41
5326 5440 2.602660 GCCATGTTGTGTTGTGTTTGTC 59.397 45.455 0.00 0.00 0.00 3.18
5327 5441 2.028658 TGCCATGTTGTGTTGTGTTTGT 60.029 40.909 0.00 0.00 0.00 2.83
5328 5442 2.614779 TGCCATGTTGTGTTGTGTTTG 58.385 42.857 0.00 0.00 0.00 2.93
5329 5443 3.118847 TCATGCCATGTTGTGTTGTGTTT 60.119 39.130 4.31 0.00 0.00 2.83
5330 5444 2.429971 TCATGCCATGTTGTGTTGTGTT 59.570 40.909 4.31 0.00 0.00 3.32
5331 5445 2.030371 TCATGCCATGTTGTGTTGTGT 58.970 42.857 4.31 0.00 0.00 3.72
5332 5446 2.797074 TCATGCCATGTTGTGTTGTG 57.203 45.000 4.31 0.00 0.00 3.33
5333 5447 5.465532 TTAATCATGCCATGTTGTGTTGT 57.534 34.783 4.31 0.00 0.00 3.32
5334 5448 4.865925 CCTTAATCATGCCATGTTGTGTTG 59.134 41.667 4.31 0.00 0.00 3.33
5335 5449 4.621274 GCCTTAATCATGCCATGTTGTGTT 60.621 41.667 4.31 0.00 0.00 3.32
5336 5450 3.119029 GCCTTAATCATGCCATGTTGTGT 60.119 43.478 4.31 0.00 0.00 3.72
5337 5451 3.119065 TGCCTTAATCATGCCATGTTGTG 60.119 43.478 4.31 0.00 0.00 3.33
5338 5452 3.098377 TGCCTTAATCATGCCATGTTGT 58.902 40.909 4.31 0.00 0.00 3.32
5339 5453 3.119065 TGTGCCTTAATCATGCCATGTTG 60.119 43.478 4.31 0.00 0.00 3.33
5340 5454 3.098377 TGTGCCTTAATCATGCCATGTT 58.902 40.909 4.31 1.59 0.00 2.71
5341 5455 2.691526 CTGTGCCTTAATCATGCCATGT 59.308 45.455 4.31 0.00 0.00 3.21
5342 5456 2.035449 CCTGTGCCTTAATCATGCCATG 59.965 50.000 0.00 0.00 0.00 3.66
5343 5457 2.313317 CCTGTGCCTTAATCATGCCAT 58.687 47.619 0.00 0.00 0.00 4.40
5344 5458 1.766494 CCTGTGCCTTAATCATGCCA 58.234 50.000 0.00 0.00 0.00 4.92
5345 5459 0.386838 GCCTGTGCCTTAATCATGCC 59.613 55.000 0.00 0.00 0.00 4.40
5346 5460 1.066605 CTGCCTGTGCCTTAATCATGC 59.933 52.381 0.00 0.00 36.33 4.06
5347 5461 2.357009 GTCTGCCTGTGCCTTAATCATG 59.643 50.000 0.00 0.00 36.33 3.07
5348 5462 2.240667 AGTCTGCCTGTGCCTTAATCAT 59.759 45.455 0.00 0.00 36.33 2.45
5349 5463 1.630369 AGTCTGCCTGTGCCTTAATCA 59.370 47.619 0.00 0.00 36.33 2.57
5350 5464 2.409948 AGTCTGCCTGTGCCTTAATC 57.590 50.000 0.00 0.00 36.33 1.75
5351 5465 5.630415 TTATAGTCTGCCTGTGCCTTAAT 57.370 39.130 0.00 0.00 36.33 1.40
5352 5466 5.429681 TTTATAGTCTGCCTGTGCCTTAA 57.570 39.130 0.00 0.00 36.33 1.85
5353 5467 5.630415 ATTTATAGTCTGCCTGTGCCTTA 57.370 39.130 0.00 0.00 36.33 2.69
5354 5468 4.510167 ATTTATAGTCTGCCTGTGCCTT 57.490 40.909 0.00 0.00 36.33 4.35
5355 5469 5.630415 TTATTTATAGTCTGCCTGTGCCT 57.370 39.130 0.00 0.00 36.33 4.75
5356 5470 9.667107 TTATATTATTTATAGTCTGCCTGTGCC 57.333 33.333 0.00 0.00 36.33 5.01
5401 5515 6.650807 GGATGACAGTTCTTGTGATGTTCTAA 59.349 38.462 0.00 0.00 41.05 2.10
5430 5544 9.277565 CCACTTAAACAAAAGATTGACATATCG 57.722 33.333 0.00 0.00 38.94 2.92
5545 5659 3.653835 AATCTCTTCCCTAACCAAGCC 57.346 47.619 0.00 0.00 0.00 4.35
5660 5775 6.311735 TCTTTAGGTTTGCTTCCCTATTTGT 58.688 36.000 0.00 0.00 33.44 2.83
5664 5779 6.069381 AGTGATCTTTAGGTTTGCTTCCCTAT 60.069 38.462 0.00 0.00 33.44 2.57
5737 5852 1.614317 GCCATTGTCCTACAGCTGGTT 60.614 52.381 19.93 0.00 36.03 3.67
5843 5958 0.451783 GCAAATTAGACCGCTGGTGG 59.548 55.000 4.94 0.00 35.25 4.61
5877 5992 3.252351 AGCCCAGACTTAGTTTCCTTCT 58.748 45.455 0.00 0.00 0.00 2.85
5916 6031 4.403453 GAAGCCAGCTTACAAAATACACG 58.597 43.478 4.57 0.00 36.26 4.49
6045 6161 4.782019 TGCCAACATCCAACAATAGAAC 57.218 40.909 0.00 0.00 0.00 3.01
6047 6163 5.067674 GCTAATGCCAACATCCAACAATAGA 59.932 40.000 0.00 0.00 34.62 1.98
6048 6164 5.068198 AGCTAATGCCAACATCCAACAATAG 59.932 40.000 0.00 0.00 40.80 1.73
6049 6165 4.955450 AGCTAATGCCAACATCCAACAATA 59.045 37.500 0.00 0.00 40.80 1.90
6050 6166 3.770933 AGCTAATGCCAACATCCAACAAT 59.229 39.130 0.00 0.00 40.80 2.71
6051 6167 3.164268 AGCTAATGCCAACATCCAACAA 58.836 40.909 0.00 0.00 40.80 2.83
6083 6199 2.551912 GGGCACACTGTCAAACCGG 61.552 63.158 0.00 0.00 0.00 5.28
6219 6335 1.014352 GGTTAAATGCCGCGTCTGAT 58.986 50.000 4.92 0.00 0.00 2.90
6379 6495 3.157087 AGTGGCTACCATTTTCTTGTGG 58.843 45.455 0.00 0.00 41.35 4.17
7413 9075 1.624336 AGCAAGCCTCAAAATGCTCA 58.376 45.000 0.00 0.00 45.49 4.26
7488 9977 2.070783 TCGCTGAAAATACGGTGGAAC 58.929 47.619 0.00 0.00 0.00 3.62
7494 9983 4.331717 AGGTTTATGTCGCTGAAAATACGG 59.668 41.667 0.00 0.00 0.00 4.02
7810 10300 1.594293 GTCCATGTATGTCCGCGGG 60.594 63.158 27.83 6.80 0.00 6.13
7842 10332 0.894835 TTCGTGTGCTATCAGGCTGA 59.105 50.000 21.19 21.19 0.00 4.26
7843 10333 1.284657 CTTCGTGTGCTATCAGGCTG 58.715 55.000 8.58 8.58 0.00 4.85
7932 10747 7.490079 TCCAATGACATGTGTTTAGATACGTAC 59.510 37.037 1.15 0.00 0.00 3.67
7940 10755 5.937540 TGGTAGTCCAATGACATGTGTTTAG 59.062 40.000 1.15 0.00 44.33 1.85
7982 10797 9.817809 ATGACATGTGTTTAGATACGAAGTTAT 57.182 29.630 1.15 0.00 37.78 1.89
7983 10798 9.647797 AATGACATGTGTTTAGATACGAAGTTA 57.352 29.630 1.15 0.00 37.78 2.24
7986 10801 7.277760 TCCAATGACATGTGTTTAGATACGAAG 59.722 37.037 1.15 0.00 0.00 3.79
7988 10803 6.533723 GTCCAATGACATGTGTTTAGATACGA 59.466 38.462 1.15 0.00 41.37 3.43
7991 10806 7.985184 GGTAGTCCAATGACATGTGTTTAGATA 59.015 37.037 1.15 0.00 44.33 1.98
7993 10808 6.170506 GGTAGTCCAATGACATGTGTTTAGA 58.829 40.000 1.15 0.00 44.33 2.10
7994 10809 5.937540 TGGTAGTCCAATGACATGTGTTTAG 59.062 40.000 1.15 0.00 44.33 1.85
7995 10810 5.870706 TGGTAGTCCAATGACATGTGTTTA 58.129 37.500 1.15 0.00 44.33 2.01
8009 10824 4.832266 AGCATGTCAATTTTTGGTAGTCCA 59.168 37.500 0.00 0.00 42.66 4.02
8010 10825 5.183904 AGAGCATGTCAATTTTTGGTAGTCC 59.816 40.000 0.00 0.00 0.00 3.85
8011 10826 6.259550 AGAGCATGTCAATTTTTGGTAGTC 57.740 37.500 0.00 0.00 0.00 2.59
8012 10827 7.759489 TTAGAGCATGTCAATTTTTGGTAGT 57.241 32.000 0.00 0.00 0.00 2.73
8015 10830 8.806146 AGTTATTAGAGCATGTCAATTTTTGGT 58.194 29.630 0.00 0.00 0.00 3.67
8016 10831 9.643693 AAGTTATTAGAGCATGTCAATTTTTGG 57.356 29.630 0.00 0.00 0.00 3.28
8018 10833 9.559958 CGAAGTTATTAGAGCATGTCAATTTTT 57.440 29.630 0.00 0.00 0.00 1.94
8020 10835 8.492673 TCGAAGTTATTAGAGCATGTCAATTT 57.507 30.769 0.00 0.00 0.00 1.82
8022 10837 7.254117 CGTTCGAAGTTATTAGAGCATGTCAAT 60.254 37.037 0.00 0.00 0.00 2.57
8025 10840 5.051641 CCGTTCGAAGTTATTAGAGCATGTC 60.052 44.000 0.00 0.00 0.00 3.06
8026 10841 4.804139 CCGTTCGAAGTTATTAGAGCATGT 59.196 41.667 0.00 0.00 0.00 3.21
8027 10842 5.041287 TCCGTTCGAAGTTATTAGAGCATG 58.959 41.667 0.00 0.00 0.00 4.06
8028 10843 5.258456 TCCGTTCGAAGTTATTAGAGCAT 57.742 39.130 0.00 0.00 0.00 3.79
8029 10844 4.669318 CTCCGTTCGAAGTTATTAGAGCA 58.331 43.478 0.00 0.00 0.00 4.26
8031 10846 3.724751 CGCTCCGTTCGAAGTTATTAGAG 59.275 47.826 0.00 0.00 0.00 2.43
8032 10847 3.374988 TCGCTCCGTTCGAAGTTATTAGA 59.625 43.478 0.00 0.00 32.53 2.10
8033 10848 3.481388 GTCGCTCCGTTCGAAGTTATTAG 59.519 47.826 0.00 0.00 37.73 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.