Multiple sequence alignment - TraesCS3A01G158100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G158100 chr3A 100.000 3079 0 0 1 3079 155824269 155827347 0.000000e+00 5686
1 TraesCS3A01G158100 chr3A 92.913 127 9 0 2567 2693 474435804 474435678 5.240000e-43 185
2 TraesCS3A01G158100 chr3A 90.370 135 12 1 2563 2696 365363073 365363207 3.160000e-40 176
3 TraesCS3A01G158100 chr3D 91.739 1392 71 21 783 2143 137979362 137980740 0.000000e+00 1893
4 TraesCS3A01G158100 chr3D 86.087 460 23 11 2125 2544 137980682 137981140 1.010000e-124 457
5 TraesCS3A01G158100 chr3D 95.122 246 12 0 2834 3079 137981145 137981390 3.720000e-104 388
6 TraesCS3A01G158100 chr3D 87.372 293 31 4 456 746 137977570 137977858 6.360000e-87 331
7 TraesCS3A01G158100 chr3D 91.667 204 16 1 235 438 137977314 137977516 6.500000e-72 281
8 TraesCS3A01G158100 chr3D 90.909 132 10 2 2567 2697 123898963 123898833 3.160000e-40 176
9 TraesCS3A01G158100 chr3D 90.000 130 13 0 2566 2695 5563958 5563829 5.280000e-38 169
10 TraesCS3A01G158100 chr3D 92.632 95 6 1 501 595 137980019 137980112 5.360000e-28 135
11 TraesCS3A01G158100 chr3B 87.112 1707 110 40 456 2104 201025409 201027063 0.000000e+00 1832
12 TraesCS3A01G158100 chr3B 95.122 246 12 0 2834 3079 201027411 201027656 3.720000e-104 388
13 TraesCS3A01G158100 chr3B 90.000 280 20 5 39 314 201025058 201025333 3.780000e-94 355
14 TraesCS3A01G158100 chr3B 92.391 92 6 1 504 595 201026374 201026464 2.490000e-26 130
15 TraesCS3A01G158100 chr4A 82.886 298 47 4 2545 2840 556761608 556761903 6.550000e-67 265
16 TraesCS3A01G158100 chr6A 93.007 143 10 0 2692 2834 91902425 91902567 3.110000e-50 209
17 TraesCS3A01G158100 chr6A 91.603 131 11 0 2563 2693 507147014 507146884 6.780000e-42 182
18 TraesCS3A01G158100 chr1B 93.007 143 10 0 2692 2834 325812688 325812546 3.110000e-50 209
19 TraesCS3A01G158100 chr1B 92.308 143 11 0 2692 2834 531122155 531122013 1.450000e-48 204
20 TraesCS3A01G158100 chr7A 92.414 145 11 0 2692 2836 451519953 451519809 1.120000e-49 207
21 TraesCS3A01G158100 chr7A 92.473 93 5 2 512 604 561707753 561707843 6.930000e-27 132
22 TraesCS3A01G158100 chr6D 91.156 147 13 0 2692 2838 438321753 438321899 1.870000e-47 200
23 TraesCS3A01G158100 chr6D 90.000 130 13 0 2567 2696 62116261 62116132 5.280000e-38 169
24 TraesCS3A01G158100 chr4D 88.344 163 15 4 2675 2834 365080865 365081026 3.130000e-45 193
25 TraesCS3A01G158100 chr4D 91.837 98 6 2 503 599 7905933 7906029 5.360000e-28 135
26 TraesCS3A01G158100 chr6B 88.125 160 19 0 2676 2835 128925997 128925838 1.130000e-44 191
27 TraesCS3A01G158100 chr6B 90.840 131 12 0 2567 2697 138779173 138779043 3.160000e-40 176
28 TraesCS3A01G158100 chr5A 86.782 174 20 3 2675 2846 622779202 622779374 1.130000e-44 191
29 TraesCS3A01G158100 chr5B 91.791 134 10 1 2563 2695 586399596 586399729 5.240000e-43 185
30 TraesCS3A01G158100 chr7D 90.840 131 12 0 2564 2694 120722207 120722337 3.160000e-40 176
31 TraesCS3A01G158100 chr7D 88.991 109 10 2 512 618 496106740 496106848 1.930000e-27 134
32 TraesCS3A01G158100 chr7D 90.291 103 7 3 512 612 496099166 496099267 6.930000e-27 132
33 TraesCS3A01G158100 chr5D 90.769 130 12 0 2564 2693 395734308 395734437 1.130000e-39 174
34 TraesCS3A01G158100 chr2A 89.062 128 14 0 2567 2694 30873516 30873389 3.180000e-35 159
35 TraesCS3A01G158100 chr7B 89.423 104 7 3 512 612 524519518 524519620 8.960000e-26 128
36 TraesCS3A01G158100 chr1A 93.182 88 5 1 1456 1542 571266743 571266656 8.960000e-26 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G158100 chr3A 155824269 155827347 3078 False 5686.000000 5686 100.000000 1 3079 1 chr3A.!!$F1 3078
1 TraesCS3A01G158100 chr3D 137977314 137981390 4076 False 580.833333 1893 90.769833 235 3079 6 chr3D.!!$F1 2844
2 TraesCS3A01G158100 chr3B 201025058 201027656 2598 False 676.250000 1832 91.156250 39 3079 4 chr3B.!!$F1 3040

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
402 407 0.914551 CAGTGTGTGCGCGTCTATAC 59.085 55.0 8.43 4.06 0.0 1.47 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2182 3794 0.330604 AGCACATGGCCAAGTGAGAT 59.669 50.0 38.12 22.61 46.5 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.551459 AGCTTCACACACTGAAATGAGC 59.449 45.455 0.00 0.00 38.47 4.26
22 23 2.291465 GCTTCACACACTGAAATGAGCA 59.709 45.455 0.00 0.00 38.47 4.26
23 24 3.057736 GCTTCACACACTGAAATGAGCAT 60.058 43.478 0.00 0.00 38.47 3.79
24 25 4.473199 CTTCACACACTGAAATGAGCATG 58.527 43.478 0.00 0.00 38.47 4.06
25 26 3.742385 TCACACACTGAAATGAGCATGA 58.258 40.909 0.00 0.00 0.00 3.07
26 27 4.136051 TCACACACTGAAATGAGCATGAA 58.864 39.130 0.00 0.00 0.00 2.57
27 28 4.214758 TCACACACTGAAATGAGCATGAAG 59.785 41.667 0.00 0.00 0.00 3.02
28 29 4.023450 CACACACTGAAATGAGCATGAAGT 60.023 41.667 0.00 0.00 0.00 3.01
29 30 4.581824 ACACACTGAAATGAGCATGAAGTT 59.418 37.500 0.00 0.00 0.00 2.66
30 31 4.915667 CACACTGAAATGAGCATGAAGTTG 59.084 41.667 0.00 0.00 0.00 3.16
31 32 4.581824 ACACTGAAATGAGCATGAAGTTGT 59.418 37.500 0.00 0.00 0.00 3.32
32 33 5.068198 ACACTGAAATGAGCATGAAGTTGTT 59.932 36.000 0.00 0.00 0.00 2.83
33 34 5.628193 CACTGAAATGAGCATGAAGTTGTTC 59.372 40.000 0.00 0.00 0.00 3.18
34 35 5.533903 ACTGAAATGAGCATGAAGTTGTTCT 59.466 36.000 0.00 0.00 33.38 3.01
35 36 6.040166 ACTGAAATGAGCATGAAGTTGTTCTT 59.960 34.615 0.00 0.00 39.32 2.52
87 88 5.126067 ACATTTGCAGTAACCATAGCCTAG 58.874 41.667 0.00 0.00 0.00 3.02
89 90 2.398588 TGCAGTAACCATAGCCTAGCT 58.601 47.619 0.00 0.00 43.41 3.32
90 91 3.572642 TGCAGTAACCATAGCCTAGCTA 58.427 45.455 0.00 0.00 45.55 3.32
91 92 3.321111 TGCAGTAACCATAGCCTAGCTAC 59.679 47.826 0.00 0.00 44.24 3.58
92 93 3.612004 GCAGTAACCATAGCCTAGCTACG 60.612 52.174 0.00 0.00 44.24 3.51
97 98 4.056092 ACCATAGCCTAGCTACGAAAAC 57.944 45.455 0.00 0.00 44.24 2.43
100 101 4.686554 CCATAGCCTAGCTACGAAAACATC 59.313 45.833 0.00 0.00 44.24 3.06
102 103 4.473477 AGCCTAGCTACGAAAACATCTT 57.527 40.909 0.00 0.00 36.99 2.40
104 105 5.349809 AGCCTAGCTACGAAAACATCTTAC 58.650 41.667 0.00 0.00 36.99 2.34
107 108 6.258068 GCCTAGCTACGAAAACATCTTACAAT 59.742 38.462 0.00 0.00 0.00 2.71
114 115 6.443792 ACGAAAACATCTTACAATTTGGGAC 58.556 36.000 0.78 0.00 0.00 4.46
147 150 8.478066 AGTACAACACATACACACATGATATCT 58.522 33.333 0.00 0.00 0.00 1.98
160 163 4.020218 ACATGATATCTTGTACGGGGGATG 60.020 45.833 19.65 6.18 33.24 3.51
164 167 1.481871 TCTTGTACGGGGGATGACTC 58.518 55.000 0.00 0.00 0.00 3.36
170 173 1.358152 ACGGGGGATGACTCAAAGAA 58.642 50.000 0.00 0.00 0.00 2.52
176 179 3.157087 GGGATGACTCAAAGAAAAGGCA 58.843 45.455 0.00 0.00 34.34 4.75
184 187 5.776744 ACTCAAAGAAAAGGCATCATCAAC 58.223 37.500 0.00 0.00 0.00 3.18
218 223 2.224161 CCGGCCAAAGGAAAACAATTCA 60.224 45.455 2.24 0.00 0.00 2.57
239 244 1.796151 CATGACCCGCATCACACAC 59.204 57.895 0.00 0.00 34.15 3.82
380 385 1.617850 ACGGCTTGAAATGCATTTGGA 59.382 42.857 28.67 15.18 39.01 3.53
392 397 1.335324 GCATTTGGAGTCAGTGTGTGC 60.335 52.381 0.00 0.00 0.00 4.57
402 407 0.914551 CAGTGTGTGCGCGTCTATAC 59.085 55.000 8.43 4.06 0.00 1.47
410 415 3.181484 TGTGCGCGTCTATACACCTATTT 60.181 43.478 8.43 0.00 31.98 1.40
412 417 4.269363 GTGCGCGTCTATACACCTATTTTT 59.731 41.667 8.43 0.00 0.00 1.94
466 507 4.601019 CTTTGTGCAGTCTGAAAAATCGT 58.399 39.130 3.32 0.00 0.00 3.73
477 518 9.569167 CAGTCTGAAAAATCGTGTAGAGTAATA 57.431 33.333 0.00 0.00 0.00 0.98
508 549 8.894768 ATAAATCTAATGTCAGGTTAGCAGTC 57.105 34.615 0.00 0.00 0.00 3.51
515 556 3.211045 GTCAGGTTAGCAGTCCACAAAA 58.789 45.455 0.00 0.00 0.00 2.44
595 636 5.238583 AGTCTCGGTAGAACCTCATTTTTG 58.761 41.667 0.00 0.00 35.66 2.44
598 639 6.017357 GTCTCGGTAGAACCTCATTTTTGTTT 60.017 38.462 0.00 0.00 35.66 2.83
599 640 6.017440 TCTCGGTAGAACCTCATTTTTGTTTG 60.017 38.462 0.00 0.00 35.66 2.93
606 650 6.312672 AGAACCTCATTTTTGTTTGGTTTTCG 59.687 34.615 0.00 0.00 37.83 3.46
610 654 6.312672 CCTCATTTTTGTTTGGTTTTCGTTCT 59.687 34.615 0.00 0.00 0.00 3.01
639 683 5.652891 TCTCCTCATGTACAGTAACTTCCTC 59.347 44.000 0.33 0.00 0.00 3.71
642 686 5.449314 CCTCATGTACAGTAACTTCCTCGAG 60.449 48.000 5.13 5.13 0.00 4.04
654 698 4.142790 ACTTCCTCGAGTAACTTCTCACA 58.857 43.478 12.31 0.00 34.46 3.58
655 699 4.767928 ACTTCCTCGAGTAACTTCTCACAT 59.232 41.667 12.31 0.00 34.46 3.21
674 718 4.807834 CACATGTTCAGACAGCGATAATCT 59.192 41.667 0.00 0.00 39.58 2.40
701 746 2.238898 AGATAACCAGTCCCTTTTCCCG 59.761 50.000 0.00 0.00 0.00 5.14
749 2292 6.049955 ACCGGTTCAGAGATGAGATAAAAA 57.950 37.500 0.00 0.00 0.00 1.94
750 2293 6.109359 ACCGGTTCAGAGATGAGATAAAAAG 58.891 40.000 0.00 0.00 0.00 2.27
752 2295 6.818644 CCGGTTCAGAGATGAGATAAAAAGAA 59.181 38.462 0.00 0.00 0.00 2.52
754 2297 7.201565 CGGTTCAGAGATGAGATAAAAAGAACC 60.202 40.741 0.00 0.00 44.66 3.62
755 2298 7.607991 GGTTCAGAGATGAGATAAAAAGAACCA 59.392 37.037 1.21 0.00 46.36 3.67
756 2299 9.003658 GTTCAGAGATGAGATAAAAAGAACCAA 57.996 33.333 0.00 0.00 0.00 3.67
757 2300 9.745018 TTCAGAGATGAGATAAAAAGAACCAAT 57.255 29.630 0.00 0.00 0.00 3.16
771 2314 8.857694 AAAAGAACCAATAAAATCGTAGGAGA 57.142 30.769 0.00 0.00 0.00 3.71
772 2315 8.857694 AAAGAACCAATAAAATCGTAGGAGAA 57.142 30.769 0.00 0.00 0.00 2.87
773 2316 8.857694 AAGAACCAATAAAATCGTAGGAGAAA 57.142 30.769 0.00 0.00 0.00 2.52
774 2317 9.462606 AAGAACCAATAAAATCGTAGGAGAAAT 57.537 29.630 0.00 0.00 0.00 2.17
775 2318 9.462606 AGAACCAATAAAATCGTAGGAGAAATT 57.537 29.630 0.00 0.00 0.00 1.82
776 2319 9.717892 GAACCAATAAAATCGTAGGAGAAATTC 57.282 33.333 0.00 0.00 0.00 2.17
777 2320 8.801882 ACCAATAAAATCGTAGGAGAAATTCA 57.198 30.769 0.00 0.00 0.00 2.57
778 2321 9.238368 ACCAATAAAATCGTAGGAGAAATTCAA 57.762 29.630 0.00 0.00 0.00 2.69
803 2346 2.770164 AAAATCGTAGGAGCAGCACT 57.230 45.000 0.00 0.00 0.00 4.40
848 2392 4.477975 CGGCCTCCTGACGACGTC 62.478 72.222 20.97 20.97 0.00 4.34
849 2393 3.063084 GGCCTCCTGACGACGTCT 61.063 66.667 26.86 0.10 33.15 4.18
850 2394 1.748122 GGCCTCCTGACGACGTCTA 60.748 63.158 26.86 13.45 33.15 2.59
851 2395 1.428620 GCCTCCTGACGACGTCTAC 59.571 63.158 26.86 7.88 33.15 2.59
852 2396 1.303799 GCCTCCTGACGACGTCTACA 61.304 60.000 26.86 12.05 33.15 2.74
893 2437 1.137594 ATCTTTTCCCACGTCCCCCA 61.138 55.000 0.00 0.00 0.00 4.96
894 2438 1.602605 CTTTTCCCACGTCCCCCAC 60.603 63.158 0.00 0.00 0.00 4.61
895 2439 3.136043 TTTTCCCACGTCCCCCACC 62.136 63.158 0.00 0.00 0.00 4.61
952 2497 1.340017 CGCATCTCCAGGGAAAGGAAA 60.340 52.381 0.00 0.00 34.08 3.13
1088 2642 1.398234 CCTCCCCCTCTCCTCCTTT 59.602 63.158 0.00 0.00 0.00 3.11
1113 2667 3.177920 GCGTCGACTCTGCTGCAG 61.178 66.667 23.31 23.31 0.00 4.41
1125 2679 3.485431 CTGCAGAGGAAGCACGCG 61.485 66.667 8.42 3.53 37.02 6.01
1189 2743 0.682855 CTCCTCGTCCTCTGCTTCCT 60.683 60.000 0.00 0.00 0.00 3.36
1307 2861 1.677552 CCAACTTCAGGTACGGGCT 59.322 57.895 0.00 0.00 0.00 5.19
1320 2874 2.360475 GGGCTGCTGTTCCAGGTC 60.360 66.667 0.00 0.00 33.44 3.85
1322 2876 1.673665 GGCTGCTGTTCCAGGTCTG 60.674 63.158 0.00 0.00 33.44 3.51
1323 2877 2.331132 GCTGCTGTTCCAGGTCTGC 61.331 63.158 0.00 8.48 33.44 4.26
1345 2899 9.453572 TCTGCTGAATTACTGTCTCAAATTTAT 57.546 29.630 0.00 0.00 0.00 1.40
1366 2920 2.165641 TCGAGCATGTAACTGTCGGAAT 59.834 45.455 0.00 0.00 0.00 3.01
1371 2925 5.858381 AGCATGTAACTGTCGGAATGATAT 58.142 37.500 0.00 0.00 0.00 1.63
1398 2952 7.085746 TGACAATTTTATTGAGCATGTCAGTG 58.914 34.615 6.42 0.00 40.31 3.66
1403 2957 1.882912 TTGAGCATGTCAGTGTGTCC 58.117 50.000 0.00 0.00 36.21 4.02
1404 2958 0.035317 TGAGCATGTCAGTGTGTCCC 59.965 55.000 0.00 0.00 0.00 4.46
1413 2967 3.904965 TGTCAGTGTGTCCCCTATGTAAA 59.095 43.478 0.00 0.00 0.00 2.01
1421 2975 2.925563 GTCCCCTATGTAAACGTGAACG 59.074 50.000 0.40 0.40 46.33 3.95
1487 3041 2.759355 TCCATGGTCTAGTGGTTAGGG 58.241 52.381 12.58 0.00 36.84 3.53
1525 3080 3.005472 CAGTAACCCGAGTTCAAGTCTCA 59.995 47.826 0.00 0.00 37.42 3.27
1535 3090 3.456277 AGTTCAAGTCTCAGTGGAACCTT 59.544 43.478 0.00 0.00 38.83 3.50
1630 3187 6.728200 TGTTGTCAACTTCTGCTAAAATGAG 58.272 36.000 16.45 0.00 0.00 2.90
1642 3199 4.627467 TGCTAAAATGAGTCTTTCGAGCTC 59.373 41.667 18.11 2.73 32.38 4.09
1655 3216 5.998981 TCTTTCGAGCTCCTAACCTCTATAG 59.001 44.000 8.47 0.00 0.00 1.31
1667 3228 1.001293 CCTCTATAGCAATCTGCCGCA 59.999 52.381 0.00 0.00 46.52 5.69
1759 3353 7.922278 ACATAACGTGTTCTTTCTAACTGTACA 59.078 33.333 0.00 0.00 38.01 2.90
1760 3354 6.579491 AACGTGTTCTTTCTAACTGTACAC 57.421 37.500 0.00 0.00 0.00 2.90
1793 3388 1.593209 GTGCGGTCGTGAGGAAACA 60.593 57.895 0.00 0.00 0.00 2.83
1996 3591 2.157085 CCGACAAGAAGAAAAGGTACGC 59.843 50.000 0.00 0.00 0.00 4.42
2016 3611 3.013921 GCCCGATAACCTGTCATCAAAA 58.986 45.455 0.00 0.00 0.00 2.44
2018 3613 4.261197 GCCCGATAACCTGTCATCAAAATC 60.261 45.833 0.00 0.00 0.00 2.17
2019 3614 5.126067 CCCGATAACCTGTCATCAAAATCT 58.874 41.667 0.00 0.00 0.00 2.40
2021 3616 6.458751 CCCGATAACCTGTCATCAAAATCTTG 60.459 42.308 0.00 0.00 0.00 3.02
2022 3617 6.094048 CCGATAACCTGTCATCAAAATCTTGT 59.906 38.462 0.00 0.00 33.94 3.16
2023 3618 6.963242 CGATAACCTGTCATCAAAATCTTGTG 59.037 38.462 0.00 0.00 33.94 3.33
2054 3666 3.372897 AGCAGATCTCATCTCACTTGGA 58.627 45.455 0.00 0.00 37.58 3.53
2104 3716 0.181114 TCAAGGAACTGCAGTGCACT 59.819 50.000 26.30 15.25 40.86 4.40
2151 3763 4.671590 TGCAGTGCAGCTGGCCAT 62.672 61.111 15.37 0.00 45.14 4.40
2152 3764 3.823330 GCAGTGCAGCTGGCCATC 61.823 66.667 17.12 0.31 45.14 3.51
2156 3768 1.975407 GTGCAGCTGGCCATCTTGT 60.975 57.895 17.12 0.00 43.89 3.16
2157 3769 1.974875 TGCAGCTGGCCATCTTGTG 60.975 57.895 17.12 0.00 43.89 3.33
2158 3770 1.975407 GCAGCTGGCCATCTTGTGT 60.975 57.895 17.12 0.00 36.11 3.72
2159 3771 0.677731 GCAGCTGGCCATCTTGTGTA 60.678 55.000 17.12 0.00 36.11 2.90
2160 3772 1.376543 CAGCTGGCCATCTTGTGTAG 58.623 55.000 5.51 0.00 0.00 2.74
2161 3773 0.393537 AGCTGGCCATCTTGTGTAGC 60.394 55.000 5.51 2.03 0.00 3.58
2162 3774 0.393537 GCTGGCCATCTTGTGTAGCT 60.394 55.000 5.51 0.00 0.00 3.32
2163 3775 1.661341 CTGGCCATCTTGTGTAGCTC 58.339 55.000 5.51 0.00 0.00 4.09
2164 3776 0.983467 TGGCCATCTTGTGTAGCTCA 59.017 50.000 0.00 0.00 0.00 4.26
2165 3777 1.350684 TGGCCATCTTGTGTAGCTCAA 59.649 47.619 0.00 0.00 0.00 3.02
2166 3778 2.012673 GGCCATCTTGTGTAGCTCAAG 58.987 52.381 0.00 7.21 42.25 3.02
2185 3797 7.223260 CTCAAGAGCTTATCTCATCTCATCT 57.777 40.000 0.00 0.00 44.35 2.90
2186 3798 7.218228 TCAAGAGCTTATCTCATCTCATCTC 57.782 40.000 0.00 0.00 44.35 2.75
2223 3842 1.619332 GAGAAGGACGTCCAAACCTCT 59.381 52.381 35.00 24.99 38.89 3.69
2225 3844 2.438392 AGAAGGACGTCCAAACCTCTTT 59.562 45.455 35.00 18.41 38.89 2.52
2304 3935 5.221362 TGCCTGCTGAATCAATTCCAATATG 60.221 40.000 0.48 0.00 35.97 1.78
2508 4173 5.172687 TGTAACCACCAGATGAGCAAATA 57.827 39.130 0.00 0.00 0.00 1.40
2515 4180 2.617308 CCAGATGAGCAAATACAGCCAG 59.383 50.000 0.00 0.00 0.00 4.85
2526 4191 4.386413 CAGCCAGGAGGTGTCAAC 57.614 61.111 0.00 0.00 39.23 3.18
2544 4210 4.576463 GTCAACAATGGTCACTTCTGACTT 59.424 41.667 1.12 0.00 45.56 3.01
2546 4212 6.428159 GTCAACAATGGTCACTTCTGACTTAT 59.572 38.462 1.12 0.00 45.56 1.73
2547 4213 7.602644 GTCAACAATGGTCACTTCTGACTTATA 59.397 37.037 1.12 0.00 45.56 0.98
2548 4214 7.602644 TCAACAATGGTCACTTCTGACTTATAC 59.397 37.037 1.12 0.00 45.56 1.47
2549 4215 7.246171 ACAATGGTCACTTCTGACTTATACT 57.754 36.000 1.12 0.00 45.56 2.12
2550 4216 7.324178 ACAATGGTCACTTCTGACTTATACTC 58.676 38.462 1.12 0.00 45.56 2.59
2551 4217 5.916661 TGGTCACTTCTGACTTATACTCC 57.083 43.478 1.12 0.00 45.56 3.85
2552 4218 4.710375 TGGTCACTTCTGACTTATACTCCC 59.290 45.833 1.12 0.00 45.56 4.30
2553 4219 4.957327 GGTCACTTCTGACTTATACTCCCT 59.043 45.833 1.12 0.00 45.56 4.20
2554 4220 5.068067 GGTCACTTCTGACTTATACTCCCTC 59.932 48.000 1.12 0.00 45.56 4.30
2555 4221 5.068067 GTCACTTCTGACTTATACTCCCTCC 59.932 48.000 0.00 0.00 43.26 4.30
2556 4222 4.956700 CACTTCTGACTTATACTCCCTCCA 59.043 45.833 0.00 0.00 0.00 3.86
2557 4223 5.600484 CACTTCTGACTTATACTCCCTCCAT 59.400 44.000 0.00 0.00 0.00 3.41
2558 4224 6.098982 CACTTCTGACTTATACTCCCTCCATT 59.901 42.308 0.00 0.00 0.00 3.16
2559 4225 6.325286 ACTTCTGACTTATACTCCCTCCATTC 59.675 42.308 0.00 0.00 0.00 2.67
2560 4226 5.148502 TCTGACTTATACTCCCTCCATTCC 58.851 45.833 0.00 0.00 0.00 3.01
2561 4227 4.232091 TGACTTATACTCCCTCCATTCCC 58.768 47.826 0.00 0.00 0.00 3.97
2562 4228 4.077982 TGACTTATACTCCCTCCATTCCCT 60.078 45.833 0.00 0.00 0.00 4.20
2563 4229 5.137255 TGACTTATACTCCCTCCATTCCCTA 59.863 44.000 0.00 0.00 0.00 3.53
2564 4230 6.051946 ACTTATACTCCCTCCATTCCCTAA 57.948 41.667 0.00 0.00 0.00 2.69
2565 4231 6.458784 ACTTATACTCCCTCCATTCCCTAAA 58.541 40.000 0.00 0.00 0.00 1.85
2566 4232 7.089566 ACTTATACTCCCTCCATTCCCTAAAT 58.910 38.462 0.00 0.00 0.00 1.40
2567 4233 8.246615 ACTTATACTCCCTCCATTCCCTAAATA 58.753 37.037 0.00 0.00 0.00 1.40
2568 4234 6.954352 ATACTCCCTCCATTCCCTAAATAC 57.046 41.667 0.00 0.00 0.00 1.89
2569 4235 4.909284 ACTCCCTCCATTCCCTAAATACT 58.091 43.478 0.00 0.00 0.00 2.12
2570 4236 4.908481 ACTCCCTCCATTCCCTAAATACTC 59.092 45.833 0.00 0.00 0.00 2.59
2571 4237 4.240323 TCCCTCCATTCCCTAAATACTCC 58.760 47.826 0.00 0.00 0.00 3.85
2572 4238 3.330998 CCCTCCATTCCCTAAATACTCCC 59.669 52.174 0.00 0.00 0.00 4.30
2573 4239 3.330998 CCTCCATTCCCTAAATACTCCCC 59.669 52.174 0.00 0.00 0.00 4.81
2574 4240 3.330998 CTCCATTCCCTAAATACTCCCCC 59.669 52.174 0.00 0.00 0.00 5.40
2591 4257 3.396685 CCCCCATTCCAAATTACTGGA 57.603 47.619 0.00 0.00 43.99 3.86
2592 4258 3.031013 CCCCCATTCCAAATTACTGGAC 58.969 50.000 0.00 0.00 45.37 4.02
2593 4259 3.309848 CCCCCATTCCAAATTACTGGACT 60.310 47.826 0.00 0.00 45.37 3.85
2594 4260 3.954258 CCCCATTCCAAATTACTGGACTC 59.046 47.826 0.00 0.00 45.37 3.36
2595 4261 4.569653 CCCCATTCCAAATTACTGGACTCA 60.570 45.833 0.00 0.00 45.37 3.41
2596 4262 5.203528 CCCATTCCAAATTACTGGACTCAT 58.796 41.667 0.00 0.00 45.37 2.90
2597 4263 6.364701 CCCATTCCAAATTACTGGACTCATA 58.635 40.000 0.00 0.00 45.37 2.15
2598 4264 7.006509 CCCATTCCAAATTACTGGACTCATAT 58.993 38.462 0.00 0.00 45.37 1.78
2599 4265 7.506938 CCCATTCCAAATTACTGGACTCATATT 59.493 37.037 0.00 0.00 45.37 1.28
2600 4266 8.917088 CCATTCCAAATTACTGGACTCATATTT 58.083 33.333 0.00 0.00 45.37 1.40
2611 4277 8.540507 ACTGGACTCATATTTATGTAGACACT 57.459 34.615 0.00 0.00 35.26 3.55
2612 4278 8.417106 ACTGGACTCATATTTATGTAGACACTG 58.583 37.037 0.00 0.00 35.26 3.66
2613 4279 8.533569 TGGACTCATATTTATGTAGACACTGA 57.466 34.615 0.00 0.00 35.26 3.41
2614 4280 9.147732 TGGACTCATATTTATGTAGACACTGAT 57.852 33.333 0.00 0.00 35.26 2.90
2615 4281 9.416794 GGACTCATATTTATGTAGACACTGATG 57.583 37.037 0.00 0.00 35.26 3.07
2616 4282 9.973450 GACTCATATTTATGTAGACACTGATGT 57.027 33.333 0.00 0.00 37.05 3.06
2627 4293 8.349568 TGTAGACACTGATGTATCTAAACACT 57.650 34.615 0.00 0.00 39.95 3.55
2628 4294 9.457436 TGTAGACACTGATGTATCTAAACACTA 57.543 33.333 0.00 0.00 39.95 2.74
2667 4333 8.561738 ACATCCGTATTTAGACAAATTCAAGT 57.438 30.769 0.00 0.00 35.88 3.16
2668 4334 8.665685 ACATCCGTATTTAGACAAATTCAAGTC 58.334 33.333 0.00 0.00 35.88 3.01
2669 4335 8.664798 CATCCGTATTTAGACAAATTCAAGTCA 58.335 33.333 7.95 0.00 37.23 3.41
2670 4336 8.610248 TCCGTATTTAGACAAATTCAAGTCAA 57.390 30.769 7.95 0.00 37.23 3.18
2671 4337 8.500773 TCCGTATTTAGACAAATTCAAGTCAAC 58.499 33.333 7.95 0.00 37.23 3.18
2672 4338 8.504005 CCGTATTTAGACAAATTCAAGTCAACT 58.496 33.333 7.95 0.00 37.23 3.16
2680 4346 8.912988 AGACAAATTCAAGTCAACTAATTTGGA 58.087 29.630 22.68 1.26 46.31 3.53
2681 4347 9.528018 GACAAATTCAAGTCAACTAATTTGGAA 57.472 29.630 22.68 7.42 46.31 3.53
2682 4348 9.313118 ACAAATTCAAGTCAACTAATTTGGAAC 57.687 29.630 22.68 0.00 46.31 3.62
2683 4349 9.311916 CAAATTCAAGTCAACTAATTTGGAACA 57.688 29.630 16.45 0.00 41.93 3.18
2684 4350 9.533253 AAATTCAAGTCAACTAATTTGGAACAG 57.467 29.630 3.85 0.00 42.39 3.16
2685 4351 6.633500 TCAAGTCAACTAATTTGGAACAGG 57.367 37.500 0.00 0.00 42.39 4.00
2686 4352 5.534654 TCAAGTCAACTAATTTGGAACAGGG 59.465 40.000 0.00 0.00 42.39 4.45
2687 4353 4.407365 AGTCAACTAATTTGGAACAGGGG 58.593 43.478 0.00 0.00 42.39 4.79
2688 4354 3.509967 GTCAACTAATTTGGAACAGGGGG 59.490 47.826 0.00 0.00 42.39 5.40
2689 4355 3.399644 TCAACTAATTTGGAACAGGGGGA 59.600 43.478 0.00 0.00 42.39 4.81
2690 4356 3.739401 ACTAATTTGGAACAGGGGGAG 57.261 47.619 0.00 0.00 42.39 4.30
2691 4357 2.993863 ACTAATTTGGAACAGGGGGAGT 59.006 45.455 0.00 0.00 42.39 3.85
2692 4358 4.180723 ACTAATTTGGAACAGGGGGAGTA 58.819 43.478 0.00 0.00 42.39 2.59
2693 4359 4.794067 ACTAATTTGGAACAGGGGGAGTAT 59.206 41.667 0.00 0.00 42.39 2.12
2694 4360 5.974370 ACTAATTTGGAACAGGGGGAGTATA 59.026 40.000 0.00 0.00 42.39 1.47
2695 4361 5.806955 AATTTGGAACAGGGGGAGTATAA 57.193 39.130 0.00 0.00 42.39 0.98
2696 4362 4.855298 TTTGGAACAGGGGGAGTATAAG 57.145 45.455 0.00 0.00 42.39 1.73
2697 4363 3.502051 TGGAACAGGGGGAGTATAAGT 57.498 47.619 0.00 0.00 0.00 2.24
2698 4364 3.381335 TGGAACAGGGGGAGTATAAGTC 58.619 50.000 0.00 0.00 0.00 3.01
2699 4365 3.013648 TGGAACAGGGGGAGTATAAGTCT 59.986 47.826 0.00 0.00 0.00 3.24
2700 4366 4.038633 GGAACAGGGGGAGTATAAGTCTT 58.961 47.826 0.00 0.00 0.00 3.01
2701 4367 4.473922 GGAACAGGGGGAGTATAAGTCTTT 59.526 45.833 0.00 0.00 0.00 2.52
2702 4368 5.396548 GGAACAGGGGGAGTATAAGTCTTTC 60.397 48.000 0.00 0.00 0.00 2.62
2703 4369 4.961585 ACAGGGGGAGTATAAGTCTTTCT 58.038 43.478 0.00 0.00 0.00 2.52
2704 4370 6.101274 ACAGGGGGAGTATAAGTCTTTCTA 57.899 41.667 0.00 0.00 0.00 2.10
2705 4371 6.694611 ACAGGGGGAGTATAAGTCTTTCTAT 58.305 40.000 0.00 0.00 0.00 1.98
2706 4372 7.834046 ACAGGGGGAGTATAAGTCTTTCTATA 58.166 38.462 0.00 0.00 0.00 1.31
2707 4373 7.951245 ACAGGGGGAGTATAAGTCTTTCTATAG 59.049 40.741 0.00 0.00 0.00 1.31
2708 4374 8.171400 CAGGGGGAGTATAAGTCTTTCTATAGA 58.829 40.741 0.00 0.00 0.00 1.98
2709 4375 8.917546 AGGGGGAGTATAAGTCTTTCTATAGAT 58.082 37.037 2.58 0.00 0.00 1.98
2710 4376 9.549984 GGGGGAGTATAAGTCTTTCTATAGATT 57.450 37.037 2.58 0.00 0.00 2.40
2732 4398 5.453567 TCCAATATGGACTACTGACGATG 57.546 43.478 0.00 0.00 42.67 3.84
2733 4399 3.990469 CCAATATGGACTACTGACGATGC 59.010 47.826 0.00 0.00 40.96 3.91
2734 4400 4.501400 CCAATATGGACTACTGACGATGCA 60.501 45.833 0.00 0.00 40.96 3.96
2735 4401 4.937201 ATATGGACTACTGACGATGCAA 57.063 40.909 0.00 0.00 0.00 4.08
2736 4402 3.610040 ATGGACTACTGACGATGCAAA 57.390 42.857 0.00 0.00 0.00 3.68
2737 4403 3.394674 TGGACTACTGACGATGCAAAA 57.605 42.857 0.00 0.00 0.00 2.44
2738 4404 3.937814 TGGACTACTGACGATGCAAAAT 58.062 40.909 0.00 0.00 0.00 1.82
2739 4405 3.684305 TGGACTACTGACGATGCAAAATG 59.316 43.478 0.00 0.00 0.00 2.32
2740 4406 3.932710 GGACTACTGACGATGCAAAATGA 59.067 43.478 0.00 0.00 0.00 2.57
2741 4407 4.033358 GGACTACTGACGATGCAAAATGAG 59.967 45.833 0.00 0.00 0.00 2.90
2742 4408 4.569943 ACTACTGACGATGCAAAATGAGT 58.430 39.130 0.00 0.00 0.00 3.41
2743 4409 3.818961 ACTGACGATGCAAAATGAGTG 57.181 42.857 0.00 0.00 0.00 3.51
2744 4410 3.402110 ACTGACGATGCAAAATGAGTGA 58.598 40.909 0.00 0.00 0.00 3.41
2745 4411 3.814842 ACTGACGATGCAAAATGAGTGAA 59.185 39.130 0.00 0.00 0.00 3.18
2746 4412 4.456911 ACTGACGATGCAAAATGAGTGAAT 59.543 37.500 0.00 0.00 0.00 2.57
2747 4413 4.973396 TGACGATGCAAAATGAGTGAATC 58.027 39.130 0.00 0.00 0.00 2.52
2748 4414 4.696877 TGACGATGCAAAATGAGTGAATCT 59.303 37.500 0.00 0.00 29.84 2.40
2749 4415 5.874261 TGACGATGCAAAATGAGTGAATCTA 59.126 36.000 0.00 0.00 29.84 1.98
2750 4416 6.111768 ACGATGCAAAATGAGTGAATCTAC 57.888 37.500 0.00 0.00 29.84 2.59
2751 4417 5.643348 ACGATGCAAAATGAGTGAATCTACA 59.357 36.000 0.00 0.00 29.84 2.74
2752 4418 5.961843 CGATGCAAAATGAGTGAATCTACAC 59.038 40.000 0.00 0.00 40.60 2.90
2829 4495 9.907229 AAAAGACTTATATTTAGGAACAGAGGG 57.093 33.333 0.00 0.00 0.00 4.30
2830 4496 8.855804 AAGACTTATATTTAGGAACAGAGGGA 57.144 34.615 0.00 0.00 0.00 4.20
2831 4497 8.485578 AGACTTATATTTAGGAACAGAGGGAG 57.514 38.462 0.00 0.00 0.00 4.30
2832 4498 8.068733 AGACTTATATTTAGGAACAGAGGGAGT 58.931 37.037 0.00 0.00 0.00 3.85
2859 4525 1.807139 TGCTGCTTCGCTGACAATAA 58.193 45.000 0.00 0.00 0.00 1.40
2862 4528 1.063174 CTGCTTCGCTGACAATAAGCC 59.937 52.381 11.47 0.00 42.87 4.35
2895 4561 5.124457 ACATCATGTTTCCTACAAGCATGAC 59.876 40.000 13.87 0.00 45.46 3.06
2924 4590 0.886563 CAAAAAGCTCCTCCTGCCTG 59.113 55.000 0.00 0.00 0.00 4.85
2962 4628 3.141398 TCACAAGTGAAACAGATCAGCC 58.859 45.455 0.00 0.00 41.43 4.85
3009 4675 3.996150 ATGTTGCTGTCAAACCTTCTG 57.004 42.857 0.00 0.00 33.37 3.02
3052 4718 5.766174 GGACTCTTCTATCACCGTATCTTCT 59.234 44.000 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.551459 GCTCATTTCAGTGTGTGAAGCT 59.449 45.455 0.00 0.00 46.09 3.74
1 2 2.291465 TGCTCATTTCAGTGTGTGAAGC 59.709 45.455 0.00 0.00 46.09 3.86
2 3 4.214758 TCATGCTCATTTCAGTGTGTGAAG 59.785 41.667 0.00 0.00 46.09 3.02
3 4 4.136051 TCATGCTCATTTCAGTGTGTGAA 58.864 39.130 0.00 0.00 43.82 3.18
4 5 3.742385 TCATGCTCATTTCAGTGTGTGA 58.258 40.909 0.00 0.00 0.00 3.58
5 6 4.023450 ACTTCATGCTCATTTCAGTGTGTG 60.023 41.667 0.00 0.00 0.00 3.82
6 7 4.139786 ACTTCATGCTCATTTCAGTGTGT 58.860 39.130 0.00 0.00 0.00 3.72
7 8 4.761235 ACTTCATGCTCATTTCAGTGTG 57.239 40.909 0.00 0.00 0.00 3.82
8 9 4.581824 ACAACTTCATGCTCATTTCAGTGT 59.418 37.500 0.00 0.00 0.00 3.55
9 10 5.117355 ACAACTTCATGCTCATTTCAGTG 57.883 39.130 0.00 0.00 0.00 3.66
10 11 5.533903 AGAACAACTTCATGCTCATTTCAGT 59.466 36.000 0.00 0.00 0.00 3.41
11 12 6.010294 AGAACAACTTCATGCTCATTTCAG 57.990 37.500 0.00 0.00 0.00 3.02
12 13 6.395426 AAGAACAACTTCATGCTCATTTCA 57.605 33.333 0.00 0.00 32.91 2.69
33 34 9.582431 GGCCAAATAATTGATGATGATATGAAG 57.418 33.333 0.00 0.00 38.94 3.02
34 35 8.533657 GGGCCAAATAATTGATGATGATATGAA 58.466 33.333 4.39 0.00 38.94 2.57
35 36 7.897030 AGGGCCAAATAATTGATGATGATATGA 59.103 33.333 6.18 0.00 38.94 2.15
36 37 8.074613 AGGGCCAAATAATTGATGATGATATG 57.925 34.615 6.18 0.00 38.94 1.78
37 38 8.120538 AGAGGGCCAAATAATTGATGATGATAT 58.879 33.333 6.18 0.00 38.94 1.63
49 50 4.961730 TGCAAATGTAGAGGGCCAAATAAT 59.038 37.500 6.18 0.00 0.00 1.28
52 53 2.762327 CTGCAAATGTAGAGGGCCAAAT 59.238 45.455 6.18 0.00 0.00 2.32
87 88 6.526674 CCCAAATTGTAAGATGTTTTCGTAGC 59.473 38.462 0.00 0.00 0.00 3.58
89 90 7.571613 CGTCCCAAATTGTAAGATGTTTTCGTA 60.572 37.037 0.00 0.00 0.00 3.43
90 91 6.443792 GTCCCAAATTGTAAGATGTTTTCGT 58.556 36.000 0.00 0.00 0.00 3.85
91 92 5.567534 CGTCCCAAATTGTAAGATGTTTTCG 59.432 40.000 0.00 0.00 0.00 3.46
92 93 5.861787 CCGTCCCAAATTGTAAGATGTTTTC 59.138 40.000 0.00 0.00 0.00 2.29
97 98 3.627577 CCTCCGTCCCAAATTGTAAGATG 59.372 47.826 0.00 0.00 0.00 2.90
100 101 3.067684 ACCTCCGTCCCAAATTGTAAG 57.932 47.619 0.00 0.00 0.00 2.34
102 103 3.175594 ACTACCTCCGTCCCAAATTGTA 58.824 45.455 0.00 0.00 0.00 2.41
104 105 2.781681 ACTACCTCCGTCCCAAATTG 57.218 50.000 0.00 0.00 0.00 2.32
107 108 2.299867 GTTGTACTACCTCCGTCCCAAA 59.700 50.000 0.00 0.00 0.00 3.28
114 115 4.082625 TGTGTATGTGTTGTACTACCTCCG 60.083 45.833 4.98 0.00 0.00 4.63
147 150 1.646912 TTGAGTCATCCCCCGTACAA 58.353 50.000 0.00 0.00 0.00 2.41
160 163 5.633830 TGATGATGCCTTTTCTTTGAGTC 57.366 39.130 0.00 0.00 0.00 3.36
164 167 3.922240 CCGTTGATGATGCCTTTTCTTTG 59.078 43.478 0.00 0.00 0.00 2.77
170 173 2.094675 CTTCCCGTTGATGATGCCTTT 58.905 47.619 0.00 0.00 0.00 3.11
176 179 4.514401 GGTTACTTCTTCCCGTTGATGAT 58.486 43.478 0.00 0.00 0.00 2.45
184 187 1.449070 GGCCGGTTACTTCTTCCCG 60.449 63.158 1.90 0.00 40.12 5.14
218 223 1.002257 TGTGATGCGGGTCATGCTT 60.002 52.632 0.00 0.00 35.05 3.91
271 276 6.875948 TTAGTGTTTGCTTAGCTCAAATGA 57.124 33.333 5.60 0.00 36.06 2.57
303 308 9.515226 ACTAATTTTCAAAGGATAGTTAGTGCA 57.485 29.630 0.00 0.00 36.70 4.57
326 331 5.128171 TCTCGCCAAGCCTAAATTTCTACTA 59.872 40.000 0.00 0.00 0.00 1.82
366 371 3.890756 ACACTGACTCCAAATGCATTTCA 59.109 39.130 21.70 14.98 0.00 2.69
380 385 1.792118 TAGACGCGCACACACTGACT 61.792 55.000 5.73 0.00 0.00 3.41
392 397 6.452090 GCGATAAAAATAGGTGTATAGACGCG 60.452 42.308 3.53 3.53 36.91 6.01
402 407 6.745450 ACGATGTTTTGCGATAAAAATAGGTG 59.255 34.615 0.00 0.00 32.02 4.00
410 415 9.608617 TGTTAATTTACGATGTTTTGCGATAAA 57.391 25.926 0.00 0.00 0.00 1.40
412 417 9.776158 AATGTTAATTTACGATGTTTTGCGATA 57.224 25.926 0.00 0.00 0.00 2.92
488 529 4.081642 GTGGACTGCTAACCTGACATTAGA 60.082 45.833 0.84 0.00 32.31 2.10
502 543 2.736670 AGAACCTTTTGTGGACTGCT 57.263 45.000 0.00 0.00 0.00 4.24
504 545 4.398319 ACCATAGAACCTTTTGTGGACTG 58.602 43.478 0.00 0.00 0.00 3.51
507 548 4.993705 AGACCATAGAACCTTTTGTGGA 57.006 40.909 0.00 0.00 0.00 4.02
508 549 4.636206 GCTAGACCATAGAACCTTTTGTGG 59.364 45.833 0.00 0.00 0.00 4.17
515 556 2.456073 ACCGCTAGACCATAGAACCT 57.544 50.000 0.00 0.00 0.00 3.50
625 669 6.939163 AGAAGTTACTCGAGGAAGTTACTGTA 59.061 38.462 26.80 0.28 37.97 2.74
639 683 5.343593 GTCTGAACATGTGAGAAGTTACTCG 59.656 44.000 0.00 0.00 39.49 4.18
642 686 5.107298 GCTGTCTGAACATGTGAGAAGTTAC 60.107 44.000 0.00 0.00 34.13 2.50
654 698 6.992063 AAAAGATTATCGCTGTCTGAACAT 57.008 33.333 0.00 0.00 34.13 2.71
655 699 6.426633 TGAAAAAGATTATCGCTGTCTGAACA 59.573 34.615 0.00 0.00 0.00 3.18
674 718 6.266786 GGAAAAGGGACTGGTTATCTGAAAAA 59.733 38.462 0.00 0.00 40.86 1.94
701 746 4.607235 CGTTTACAGATTTGTTTCGCAGAC 59.393 41.667 0.00 0.00 38.76 3.51
749 2292 9.462606 AATTTCTCCTACGATTTTATTGGTTCT 57.537 29.630 0.00 0.00 0.00 3.01
750 2293 9.717892 GAATTTCTCCTACGATTTTATTGGTTC 57.282 33.333 0.00 0.00 0.00 3.62
752 2295 8.801882 TGAATTTCTCCTACGATTTTATTGGT 57.198 30.769 0.00 0.00 0.00 3.67
774 2317 8.342634 GCTGCTCCTACGATTTTATATTTTGAA 58.657 33.333 0.00 0.00 0.00 2.69
775 2318 7.497579 TGCTGCTCCTACGATTTTATATTTTGA 59.502 33.333 0.00 0.00 0.00 2.69
776 2319 7.587757 GTGCTGCTCCTACGATTTTATATTTTG 59.412 37.037 0.00 0.00 0.00 2.44
777 2320 7.499232 AGTGCTGCTCCTACGATTTTATATTTT 59.501 33.333 0.00 0.00 0.00 1.82
778 2321 6.992715 AGTGCTGCTCCTACGATTTTATATTT 59.007 34.615 0.00 0.00 0.00 1.40
779 2322 6.525629 AGTGCTGCTCCTACGATTTTATATT 58.474 36.000 0.00 0.00 0.00 1.28
780 2323 6.102897 AGTGCTGCTCCTACGATTTTATAT 57.897 37.500 0.00 0.00 0.00 0.86
781 2324 5.068591 TGAGTGCTGCTCCTACGATTTTATA 59.931 40.000 0.00 0.00 43.48 0.98
803 2346 0.176910 TTGGAGATAATGCGCGGTGA 59.823 50.000 8.83 0.00 0.00 4.02
840 2384 1.585521 CGGCCATGTAGACGTCGTC 60.586 63.158 17.70 17.70 0.00 4.20
848 2392 1.331756 GATGAACTTGCGGCCATGTAG 59.668 52.381 2.24 0.00 0.00 2.74
849 2393 1.378531 GATGAACTTGCGGCCATGTA 58.621 50.000 2.24 0.00 0.00 2.29
850 2394 1.315257 GGATGAACTTGCGGCCATGT 61.315 55.000 2.24 0.00 0.00 3.21
851 2395 1.033746 AGGATGAACTTGCGGCCATG 61.034 55.000 2.24 0.00 0.00 3.66
852 2396 0.749454 GAGGATGAACTTGCGGCCAT 60.749 55.000 2.24 0.00 0.00 4.40
893 2437 1.760405 ATGGAGGAGAAAACTGGGGT 58.240 50.000 0.00 0.00 0.00 4.95
894 2438 2.907458 AATGGAGGAGAAAACTGGGG 57.093 50.000 0.00 0.00 0.00 4.96
895 2439 4.013050 GAGAAATGGAGGAGAAAACTGGG 58.987 47.826 0.00 0.00 0.00 4.45
896 2440 4.013050 GGAGAAATGGAGGAGAAAACTGG 58.987 47.826 0.00 0.00 0.00 4.00
897 2441 4.013050 GGGAGAAATGGAGGAGAAAACTG 58.987 47.826 0.00 0.00 0.00 3.16
952 2497 3.670629 CTCCCTCCCTGAGCCTCGT 62.671 68.421 0.00 0.00 0.00 4.18
1167 2721 1.603236 AAGCAGAGGACGAGGAGCTG 61.603 60.000 0.00 0.00 31.88 4.24
1189 2743 5.034852 TCTTGATCTTTGGTCACAACAGA 57.965 39.130 0.00 0.00 36.06 3.41
1320 2874 9.713740 GATAAATTTGAGACAGTAATTCAGCAG 57.286 33.333 0.00 0.00 0.00 4.24
1322 2876 8.604035 TCGATAAATTTGAGACAGTAATTCAGC 58.396 33.333 0.00 0.00 0.00 4.26
1345 2899 1.170442 TCCGACAGTTACATGCTCGA 58.830 50.000 0.00 0.00 0.00 4.04
1371 2925 8.959548 ACTGACATGCTCAATAAAATTGTCATA 58.040 29.630 3.61 0.00 40.59 2.15
1398 2952 3.598019 TCACGTTTACATAGGGGACAC 57.402 47.619 0.00 0.00 0.00 3.67
1435 2989 6.128063 TGTTGATGCGATGTTGAACATAATCA 60.128 34.615 18.89 18.89 39.27 2.57
1487 3041 2.191128 ACTGGTTCAGAGTCCAATGC 57.809 50.000 1.59 0.00 35.18 3.56
1630 3187 3.153676 GAGGTTAGGAGCTCGAAAGAC 57.846 52.381 7.83 1.96 40.25 3.01
1642 3199 4.619394 CGGCAGATTGCTATAGAGGTTAGG 60.619 50.000 3.21 0.00 44.28 2.69
1655 3216 0.738412 AATTTGCTGCGGCAGATTGC 60.738 50.000 29.64 18.73 46.73 3.56
1712 3306 1.001378 CTGTTTGAAACCGGAAGCAGG 60.001 52.381 9.46 0.00 29.48 4.85
1713 3307 1.946768 TCTGTTTGAAACCGGAAGCAG 59.053 47.619 9.46 9.92 33.15 4.24
1759 3353 3.110031 ACCCTTTGCACCCCCTGT 61.110 61.111 0.00 0.00 0.00 4.00
1760 3354 2.601367 CACCCTTTGCACCCCCTG 60.601 66.667 0.00 0.00 0.00 4.45
1772 3367 4.988716 TCCTCACGACCGCACCCT 62.989 66.667 0.00 0.00 0.00 4.34
1781 3376 1.257743 CCCTCTCTGTTTCCTCACGA 58.742 55.000 0.00 0.00 0.00 4.35
1793 3388 3.710722 CCGTTGCAGCCCCTCTCT 61.711 66.667 0.00 0.00 0.00 3.10
1853 3448 3.253061 TTGATCGGCCACCACCCA 61.253 61.111 2.24 0.00 0.00 4.51
1996 3591 5.126067 AGATTTTGATGACAGGTTATCGGG 58.874 41.667 0.60 0.00 0.00 5.14
2018 3613 3.309961 TCTGCTCTTGAGCTACACAAG 57.690 47.619 21.17 10.63 43.92 3.16
2019 3614 3.513119 AGATCTGCTCTTGAGCTACACAA 59.487 43.478 21.17 1.69 35.49 3.33
2021 3616 3.130164 TGAGATCTGCTCTTGAGCTACAC 59.870 47.826 21.17 11.49 44.27 2.90
2022 3617 3.359950 TGAGATCTGCTCTTGAGCTACA 58.640 45.455 21.17 7.48 44.27 2.74
2023 3618 4.279169 AGATGAGATCTGCTCTTGAGCTAC 59.721 45.833 21.17 10.92 44.27 3.58
2036 3648 5.104444 AGCAAATCCAAGTGAGATGAGATCT 60.104 40.000 0.00 0.00 43.70 2.75
2104 3716 3.694072 GAGCTATTACACAACATGGCCAA 59.306 43.478 10.96 0.00 0.00 4.52
2143 3755 0.393537 AGCTACACAAGATGGCCAGC 60.394 55.000 14.72 14.72 33.94 4.85
2144 3756 1.065926 TGAGCTACACAAGATGGCCAG 60.066 52.381 13.05 0.00 0.00 4.85
2146 3758 2.012673 CTTGAGCTACACAAGATGGCC 58.987 52.381 7.68 0.00 44.92 5.36
2147 3759 2.977914 TCTTGAGCTACACAAGATGGC 58.022 47.619 11.27 0.00 45.44 4.40
2152 3764 5.659463 AGATAAGCTCTTGAGCTACACAAG 58.341 41.667 23.23 7.21 45.54 3.16
2156 3768 5.832595 AGATGAGATAAGCTCTTGAGCTACA 59.167 40.000 23.23 15.28 45.54 2.74
2157 3769 6.016360 TGAGATGAGATAAGCTCTTGAGCTAC 60.016 42.308 23.23 17.07 45.54 3.58
2158 3770 6.067350 TGAGATGAGATAAGCTCTTGAGCTA 58.933 40.000 23.23 13.02 45.54 3.32
2160 3772 5.199024 TGAGATGAGATAAGCTCTTGAGC 57.801 43.478 14.16 14.16 44.27 4.26
2161 3773 7.040271 TGAGATGAGATGAGATAAGCTCTTGAG 60.040 40.741 0.00 0.00 44.27 3.02
2162 3774 6.776603 TGAGATGAGATGAGATAAGCTCTTGA 59.223 38.462 0.00 0.00 44.27 3.02
2163 3775 6.864685 GTGAGATGAGATGAGATAAGCTCTTG 59.135 42.308 0.00 0.00 44.27 3.02
2164 3776 6.779049 AGTGAGATGAGATGAGATAAGCTCTT 59.221 38.462 0.00 0.00 44.27 2.85
2165 3777 6.309357 AGTGAGATGAGATGAGATAAGCTCT 58.691 40.000 0.00 0.00 44.27 4.09
2166 3778 6.579666 AGTGAGATGAGATGAGATAAGCTC 57.420 41.667 0.00 0.00 44.21 4.09
2167 3779 6.239373 CCAAGTGAGATGAGATGAGATAAGCT 60.239 42.308 0.00 0.00 0.00 3.74
2168 3780 5.927689 CCAAGTGAGATGAGATGAGATAAGC 59.072 44.000 0.00 0.00 0.00 3.09
2169 3781 5.927689 GCCAAGTGAGATGAGATGAGATAAG 59.072 44.000 0.00 0.00 0.00 1.73
2170 3782 5.221601 GGCCAAGTGAGATGAGATGAGATAA 60.222 44.000 0.00 0.00 0.00 1.75
2171 3783 4.282957 GGCCAAGTGAGATGAGATGAGATA 59.717 45.833 0.00 0.00 0.00 1.98
2172 3784 3.071312 GGCCAAGTGAGATGAGATGAGAT 59.929 47.826 0.00 0.00 0.00 2.75
2173 3785 2.433604 GGCCAAGTGAGATGAGATGAGA 59.566 50.000 0.00 0.00 0.00 3.27
2174 3786 2.169978 TGGCCAAGTGAGATGAGATGAG 59.830 50.000 0.61 0.00 0.00 2.90
2175 3787 2.190538 TGGCCAAGTGAGATGAGATGA 58.809 47.619 0.61 0.00 0.00 2.92
2176 3788 2.704464 TGGCCAAGTGAGATGAGATG 57.296 50.000 0.61 0.00 0.00 2.90
2177 3789 2.508716 ACATGGCCAAGTGAGATGAGAT 59.491 45.455 13.91 0.00 0.00 2.75
2178 3790 1.911357 ACATGGCCAAGTGAGATGAGA 59.089 47.619 13.91 0.00 0.00 3.27
2179 3791 2.014857 CACATGGCCAAGTGAGATGAG 58.985 52.381 32.45 9.18 37.97 2.90
2180 3792 1.951895 GCACATGGCCAAGTGAGATGA 60.952 52.381 38.12 0.00 37.97 2.92
2181 3793 0.454600 GCACATGGCCAAGTGAGATG 59.545 55.000 38.12 20.50 37.97 2.90
2182 3794 0.330604 AGCACATGGCCAAGTGAGAT 59.669 50.000 38.12 22.61 46.50 2.75
2183 3795 0.607217 CAGCACATGGCCAAGTGAGA 60.607 55.000 38.12 1.56 46.50 3.27
2184 3796 1.592400 CCAGCACATGGCCAAGTGAG 61.592 60.000 38.12 28.52 43.83 3.51
2185 3797 1.604308 CCAGCACATGGCCAAGTGA 60.604 57.895 38.12 3.28 43.83 3.41
2186 3798 2.967397 CCAGCACATGGCCAAGTG 59.033 61.111 31.83 31.83 43.83 3.16
2211 3823 4.932146 ACAAAATCAAAGAGGTTTGGACG 58.068 39.130 9.40 0.00 42.98 4.79
2223 3842 6.616947 ACGTCAAGACTGAAACAAAATCAAA 58.383 32.000 0.00 0.00 31.88 2.69
2225 3844 5.811399 ACGTCAAGACTGAAACAAAATCA 57.189 34.783 0.00 0.00 31.88 2.57
2304 3935 2.665052 CGGAGCTACGTACAAAACTTCC 59.335 50.000 11.15 0.00 0.00 3.46
2508 4173 1.344953 TGTTGACACCTCCTGGCTGT 61.345 55.000 0.00 0.00 36.63 4.40
2515 4180 1.880027 GTGACCATTGTTGACACCTCC 59.120 52.381 0.00 0.00 0.00 4.30
2544 4210 7.786968 AGTATTTAGGGAATGGAGGGAGTATA 58.213 38.462 0.00 0.00 0.00 1.47
2546 4212 6.051946 AGTATTTAGGGAATGGAGGGAGTA 57.948 41.667 0.00 0.00 0.00 2.59
2547 4213 4.908481 GAGTATTTAGGGAATGGAGGGAGT 59.092 45.833 0.00 0.00 0.00 3.85
2548 4214 4.287326 GGAGTATTTAGGGAATGGAGGGAG 59.713 50.000 0.00 0.00 0.00 4.30
2549 4215 4.240323 GGAGTATTTAGGGAATGGAGGGA 58.760 47.826 0.00 0.00 0.00 4.20
2550 4216 3.330998 GGGAGTATTTAGGGAATGGAGGG 59.669 52.174 0.00 0.00 0.00 4.30
2551 4217 3.330998 GGGGAGTATTTAGGGAATGGAGG 59.669 52.174 0.00 0.00 0.00 4.30
2552 4218 3.330998 GGGGGAGTATTTAGGGAATGGAG 59.669 52.174 0.00 0.00 0.00 3.86
2553 4219 3.332968 GGGGGAGTATTTAGGGAATGGA 58.667 50.000 0.00 0.00 0.00 3.41
2554 4220 3.808834 GGGGGAGTATTTAGGGAATGG 57.191 52.381 0.00 0.00 0.00 3.16
2571 4237 3.396685 TCCAGTAATTTGGAATGGGGG 57.603 47.619 0.00 0.00 44.09 5.40
2585 4251 9.642343 AGTGTCTACATAAATATGAGTCCAGTA 57.358 33.333 7.40 0.00 37.15 2.74
2586 4252 8.417106 CAGTGTCTACATAAATATGAGTCCAGT 58.583 37.037 7.40 0.30 37.15 4.00
2587 4253 8.633561 TCAGTGTCTACATAAATATGAGTCCAG 58.366 37.037 7.40 0.00 37.15 3.86
2588 4254 8.533569 TCAGTGTCTACATAAATATGAGTCCA 57.466 34.615 7.40 0.00 37.15 4.02
2589 4255 9.416794 CATCAGTGTCTACATAAATATGAGTCC 57.583 37.037 7.40 0.00 37.15 3.85
2590 4256 9.973450 ACATCAGTGTCTACATAAATATGAGTC 57.027 33.333 7.40 0.00 33.96 3.36
2601 4267 8.972127 AGTGTTTAGATACATCAGTGTCTACAT 58.028 33.333 2.22 0.00 44.78 2.29
2602 4268 8.349568 AGTGTTTAGATACATCAGTGTCTACA 57.650 34.615 2.22 0.00 44.78 2.74
2641 4307 9.661563 ACTTGAATTTGTCTAAATACGGATGTA 57.338 29.630 0.00 0.00 35.50 2.29
2642 4308 8.561738 ACTTGAATTTGTCTAAATACGGATGT 57.438 30.769 0.00 0.00 35.50 3.06
2643 4309 8.664798 TGACTTGAATTTGTCTAAATACGGATG 58.335 33.333 8.09 0.00 35.50 3.51
2644 4310 8.786826 TGACTTGAATTTGTCTAAATACGGAT 57.213 30.769 8.09 0.00 35.50 4.18
2645 4311 8.500773 GTTGACTTGAATTTGTCTAAATACGGA 58.499 33.333 8.09 0.00 35.50 4.69
2646 4312 8.504005 AGTTGACTTGAATTTGTCTAAATACGG 58.496 33.333 8.09 0.00 35.50 4.02
2654 4320 8.912988 TCCAAATTAGTTGACTTGAATTTGTCT 58.087 29.630 20.10 0.00 43.18 3.41
2655 4321 9.528018 TTCCAAATTAGTTGACTTGAATTTGTC 57.472 29.630 20.10 0.00 43.18 3.18
2656 4322 9.313118 GTTCCAAATTAGTTGACTTGAATTTGT 57.687 29.630 20.10 0.00 43.18 2.83
2657 4323 9.311916 TGTTCCAAATTAGTTGACTTGAATTTG 57.688 29.630 17.35 17.35 43.82 2.32
2658 4324 9.533253 CTGTTCCAAATTAGTTGACTTGAATTT 57.467 29.630 0.00 0.00 39.87 1.82
2659 4325 8.143835 CCTGTTCCAAATTAGTTGACTTGAATT 58.856 33.333 0.00 0.00 39.87 2.17
2660 4326 7.255942 CCCTGTTCCAAATTAGTTGACTTGAAT 60.256 37.037 0.00 0.00 39.87 2.57
2661 4327 6.040391 CCCTGTTCCAAATTAGTTGACTTGAA 59.960 38.462 0.00 0.00 39.87 2.69
2662 4328 5.534654 CCCTGTTCCAAATTAGTTGACTTGA 59.465 40.000 0.00 0.00 39.87 3.02
2663 4329 5.278957 CCCCTGTTCCAAATTAGTTGACTTG 60.279 44.000 0.00 0.00 39.87 3.16
2664 4330 4.832823 CCCCTGTTCCAAATTAGTTGACTT 59.167 41.667 0.00 0.00 39.87 3.01
2665 4331 4.407365 CCCCTGTTCCAAATTAGTTGACT 58.593 43.478 0.00 0.00 39.87 3.41
2666 4332 3.509967 CCCCCTGTTCCAAATTAGTTGAC 59.490 47.826 0.00 0.00 39.87 3.18
2667 4333 3.399644 TCCCCCTGTTCCAAATTAGTTGA 59.600 43.478 0.00 0.00 39.87 3.18
2668 4334 3.763897 CTCCCCCTGTTCCAAATTAGTTG 59.236 47.826 0.00 0.00 36.94 3.16
2669 4335 3.401342 ACTCCCCCTGTTCCAAATTAGTT 59.599 43.478 0.00 0.00 0.00 2.24
2670 4336 2.993863 ACTCCCCCTGTTCCAAATTAGT 59.006 45.455 0.00 0.00 0.00 2.24
2671 4337 3.739401 ACTCCCCCTGTTCCAAATTAG 57.261 47.619 0.00 0.00 0.00 1.73
2672 4338 6.449041 ACTTATACTCCCCCTGTTCCAAATTA 59.551 38.462 0.00 0.00 0.00 1.40
2673 4339 5.255443 ACTTATACTCCCCCTGTTCCAAATT 59.745 40.000 0.00 0.00 0.00 1.82
2674 4340 4.794067 ACTTATACTCCCCCTGTTCCAAAT 59.206 41.667 0.00 0.00 0.00 2.32
2675 4341 4.180723 ACTTATACTCCCCCTGTTCCAAA 58.819 43.478 0.00 0.00 0.00 3.28
2676 4342 3.778629 GACTTATACTCCCCCTGTTCCAA 59.221 47.826 0.00 0.00 0.00 3.53
2677 4343 3.013648 AGACTTATACTCCCCCTGTTCCA 59.986 47.826 0.00 0.00 0.00 3.53
2678 4344 3.655384 AGACTTATACTCCCCCTGTTCC 58.345 50.000 0.00 0.00 0.00 3.62
2679 4345 5.425862 AGAAAGACTTATACTCCCCCTGTTC 59.574 44.000 0.00 0.00 0.00 3.18
2680 4346 5.351405 AGAAAGACTTATACTCCCCCTGTT 58.649 41.667 0.00 0.00 0.00 3.16
2681 4347 4.961585 AGAAAGACTTATACTCCCCCTGT 58.038 43.478 0.00 0.00 0.00 4.00
2682 4348 8.171400 TCTATAGAAAGACTTATACTCCCCCTG 58.829 40.741 0.00 0.00 0.00 4.45
2683 4349 8.303338 TCTATAGAAAGACTTATACTCCCCCT 57.697 38.462 0.00 0.00 0.00 4.79
2684 4350 9.549984 AATCTATAGAAAGACTTATACTCCCCC 57.450 37.037 6.52 0.00 0.00 5.40
2710 4376 4.262036 GCATCGTCAGTAGTCCATATTGGA 60.262 45.833 0.00 0.00 45.98 3.53
2711 4377 3.990469 GCATCGTCAGTAGTCCATATTGG 59.010 47.826 0.00 0.00 39.43 3.16
2712 4378 4.620982 TGCATCGTCAGTAGTCCATATTG 58.379 43.478 0.00 0.00 0.00 1.90
2713 4379 4.937201 TGCATCGTCAGTAGTCCATATT 57.063 40.909 0.00 0.00 0.00 1.28
2714 4380 4.937201 TTGCATCGTCAGTAGTCCATAT 57.063 40.909 0.00 0.00 0.00 1.78
2715 4381 4.729227 TTTGCATCGTCAGTAGTCCATA 57.271 40.909 0.00 0.00 0.00 2.74
2716 4382 3.610040 TTTGCATCGTCAGTAGTCCAT 57.390 42.857 0.00 0.00 0.00 3.41
2717 4383 3.394674 TTTTGCATCGTCAGTAGTCCA 57.605 42.857 0.00 0.00 0.00 4.02
2718 4384 3.932710 TCATTTTGCATCGTCAGTAGTCC 59.067 43.478 0.00 0.00 0.00 3.85
2719 4385 4.627467 ACTCATTTTGCATCGTCAGTAGTC 59.373 41.667 0.00 0.00 0.00 2.59
2720 4386 4.389992 CACTCATTTTGCATCGTCAGTAGT 59.610 41.667 0.00 0.00 0.00 2.73
2721 4387 4.627035 TCACTCATTTTGCATCGTCAGTAG 59.373 41.667 0.00 0.00 0.00 2.57
2722 4388 4.565022 TCACTCATTTTGCATCGTCAGTA 58.435 39.130 0.00 0.00 0.00 2.74
2723 4389 3.402110 TCACTCATTTTGCATCGTCAGT 58.598 40.909 0.00 0.00 0.00 3.41
2724 4390 4.408993 TTCACTCATTTTGCATCGTCAG 57.591 40.909 0.00 0.00 0.00 3.51
2725 4391 4.696877 AGATTCACTCATTTTGCATCGTCA 59.303 37.500 0.00 0.00 0.00 4.35
2726 4392 5.227238 AGATTCACTCATTTTGCATCGTC 57.773 39.130 0.00 0.00 0.00 4.20
2727 4393 5.643348 TGTAGATTCACTCATTTTGCATCGT 59.357 36.000 0.00 0.00 0.00 3.73
2728 4394 5.961843 GTGTAGATTCACTCATTTTGCATCG 59.038 40.000 0.00 0.00 35.68 3.84
2729 4395 7.081526 AGTGTAGATTCACTCATTTTGCATC 57.918 36.000 0.00 0.00 44.07 3.91
2803 4469 9.907229 CCCTCTGTTCCTAAATATAAGTCTTTT 57.093 33.333 0.00 0.00 0.00 2.27
2804 4470 9.280456 TCCCTCTGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
2805 4471 8.855804 TCCCTCTGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
2806 4472 8.068733 ACTCCCTCTGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 0.00 3.24
2807 4473 8.252624 ACTCCCTCTGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 0.00 3.01
2808 4474 9.900112 ATACTCCCTCTGTTCCTAAATATAAGT 57.100 33.333 0.00 0.00 0.00 2.24
2812 4478 8.763601 GCATATACTCCCTCTGTTCCTAAATAT 58.236 37.037 0.00 0.00 0.00 1.28
2813 4479 7.956315 AGCATATACTCCCTCTGTTCCTAAATA 59.044 37.037 0.00 0.00 0.00 1.40
2814 4480 6.789959 AGCATATACTCCCTCTGTTCCTAAAT 59.210 38.462 0.00 0.00 0.00 1.40
2815 4481 6.143915 AGCATATACTCCCTCTGTTCCTAAA 58.856 40.000 0.00 0.00 0.00 1.85
2816 4482 5.716979 AGCATATACTCCCTCTGTTCCTAA 58.283 41.667 0.00 0.00 0.00 2.69
2817 4483 5.340891 AGCATATACTCCCTCTGTTCCTA 57.659 43.478 0.00 0.00 0.00 2.94
2818 4484 4.206244 AGCATATACTCCCTCTGTTCCT 57.794 45.455 0.00 0.00 0.00 3.36
2819 4485 4.636249 CAAGCATATACTCCCTCTGTTCC 58.364 47.826 0.00 0.00 0.00 3.62
2820 4486 4.061596 GCAAGCATATACTCCCTCTGTTC 58.938 47.826 0.00 0.00 0.00 3.18
2821 4487 3.713764 AGCAAGCATATACTCCCTCTGTT 59.286 43.478 0.00 0.00 0.00 3.16
2822 4488 3.070734 CAGCAAGCATATACTCCCTCTGT 59.929 47.826 0.00 0.00 0.00 3.41
2823 4489 3.661944 CAGCAAGCATATACTCCCTCTG 58.338 50.000 0.00 0.00 0.00 3.35
2824 4490 2.038295 GCAGCAAGCATATACTCCCTCT 59.962 50.000 0.00 0.00 44.79 3.69
2825 4491 2.421619 GCAGCAAGCATATACTCCCTC 58.578 52.381 0.00 0.00 44.79 4.30
2826 4492 2.557920 GCAGCAAGCATATACTCCCT 57.442 50.000 0.00 0.00 44.79 4.20
2859 4525 5.393027 GGAAACATGATGTAACAAATCGGCT 60.393 40.000 0.00 0.00 0.00 5.52
2862 4528 7.747888 TGTAGGAAACATGATGTAACAAATCG 58.252 34.615 0.00 0.00 31.43 3.34
2895 4561 2.623416 AGGAGCTTTTTGTTTCTTCCCG 59.377 45.455 0.00 0.00 0.00 5.14
2944 4610 4.482386 CATTGGCTGATCTGTTTCACTTG 58.518 43.478 1.27 0.00 0.00 3.16
2962 4628 1.068055 GCCAGTCTGGTTTCAGCATTG 60.068 52.381 20.24 0.00 40.46 2.82
3009 4675 3.257375 GTCCCCACCTAACCAAATTCAAC 59.743 47.826 0.00 0.00 0.00 3.18
3052 4718 4.921515 CCTTTTGTGTATCTCGTCGAAAGA 59.078 41.667 0.00 1.58 34.87 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.