Multiple sequence alignment - TraesCS3A01G157800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G157800 chr3A 100.000 2952 0 0 1 2952 155063765 155060814 0.000000e+00 5452.0
1 TraesCS3A01G157800 chr3A 100.000 2263 0 0 3223 5485 155060543 155058281 0.000000e+00 4180.0
2 TraesCS3A01G157800 chr3A 85.749 407 38 5 775 1180 136000441 136000054 3.950000e-111 412.0
3 TraesCS3A01G157800 chr3A 85.096 416 42 5 775 1189 648184056 648184452 1.840000e-109 407.0
4 TraesCS3A01G157800 chr3A 92.053 151 10 2 4096 4245 593355718 593355867 1.550000e-50 211.0
5 TraesCS3A01G157800 chr3D 96.400 1250 28 9 4246 5485 137005834 137007076 0.000000e+00 2043.0
6 TraesCS3A01G157800 chr3D 91.894 1283 78 14 2 1260 137001851 137003131 0.000000e+00 1770.0
7 TraesCS3A01G157800 chr3D 93.726 1052 54 8 1886 2929 137003953 137005000 0.000000e+00 1567.0
8 TraesCS3A01G157800 chr3D 86.613 874 68 18 3235 4096 137004996 137005832 0.000000e+00 920.0
9 TraesCS3A01G157800 chr3D 90.000 370 31 4 1524 1893 137003208 137003571 1.790000e-129 473.0
10 TraesCS3A01G157800 chr3D 85.348 273 21 4 917 1189 500881610 500881357 1.170000e-66 265.0
11 TraesCS3A01G157800 chr3D 94.040 151 8 1 4096 4245 26165697 26165847 1.540000e-55 228.0
12 TraesCS3A01G157800 chr3D 91.228 114 6 4 1440 1550 496453437 496453325 9.520000e-33 152.0
13 TraesCS3A01G157800 chr3D 88.889 81 9 0 1109 1189 19368924 19368844 3.500000e-17 100.0
14 TraesCS3A01G157800 chr3D 92.537 67 5 0 1254 1320 437189896 437189830 4.520000e-16 97.1
15 TraesCS3A01G157800 chr3B 92.673 1283 74 11 2 1265 200485282 200484001 0.000000e+00 1831.0
16 TraesCS3A01G157800 chr3B 93.419 1246 52 15 4246 5485 200481082 200479861 0.000000e+00 1820.0
17 TraesCS3A01G157800 chr3B 94.931 651 29 3 1886 2533 200483064 200482415 0.000000e+00 1016.0
18 TraesCS3A01G157800 chr3B 86.250 880 79 23 3235 4099 200481933 200481081 0.000000e+00 917.0
19 TraesCS3A01G157800 chr3B 88.861 404 33 8 2535 2929 200482329 200481929 2.300000e-133 486.0
20 TraesCS3A01G157800 chr3B 88.333 300 30 5 1524 1822 420417918 420418213 6.760000e-94 355.0
21 TraesCS3A01G157800 chr3B 87.908 306 31 6 1524 1827 726627513 726627814 6.760000e-94 355.0
22 TraesCS3A01G157800 chr3B 86.025 322 28 4 775 1095 259400570 259400875 4.100000e-86 329.0
23 TraesCS3A01G157800 chr3B 88.462 208 23 1 1053 1260 420417635 420417841 3.280000e-62 250.0
24 TraesCS3A01G157800 chr3B 90.435 115 7 4 1439 1550 138007443 138007330 1.230000e-31 148.0
25 TraesCS3A01G157800 chr3B 92.784 97 7 0 1350 1446 200483894 200483798 2.060000e-29 141.0
26 TraesCS3A01G157800 chr3B 89.773 88 8 1 1360 1446 579341227 579341140 1.620000e-20 111.0
27 TraesCS3A01G157800 chr3B 82.192 73 9 4 3626 3695 200481637 200481566 5.930000e-05 60.2
28 TraesCS3A01G157800 chr4B 86.058 416 35 10 777 1189 570893494 570893889 5.080000e-115 425.0
29 TraesCS3A01G157800 chr4B 94.444 36 1 1 1336 1371 606852091 606852057 3.000000e-03 54.7
30 TraesCS3A01G157800 chr6B 88.852 305 28 5 1524 1827 471231380 471231679 2.410000e-98 370.0
31 TraesCS3A01G157800 chr6B 85.882 340 26 8 775 1111 116276999 116276679 5.260000e-90 342.0
32 TraesCS3A01G157800 chr6B 88.462 208 24 0 1053 1260 471231096 471231303 9.120000e-63 252.0
33 TraesCS3A01G157800 chr6B 94.444 36 2 0 1336 1371 126997835 126997800 7.680000e-04 56.5
34 TraesCS3A01G157800 chr7A 87.789 303 32 4 1534 1833 628829846 628829546 3.140000e-92 350.0
35 TraesCS3A01G157800 chr5A 84.906 318 31 9 1524 1833 10743180 10742872 6.900000e-79 305.0
36 TraesCS3A01G157800 chr5A 86.957 207 26 1 2051 2257 613479572 613479367 1.190000e-56 231.0
37 TraesCS3A01G157800 chr5A 90.728 151 13 1 4096 4245 643242130 643241980 3.350000e-47 200.0
38 TraesCS3A01G157800 chr5A 93.846 65 4 0 1256 1320 692885791 692885855 1.260000e-16 99.0
39 TraesCS3A01G157800 chr5A 97.619 42 1 0 1322 1363 131645769 131645810 7.620000e-09 73.1
40 TraesCS3A01G157800 chr5A 97.500 40 1 0 1322 1361 473323623 473323662 9.860000e-08 69.4
41 TraesCS3A01G157800 chr5D 79.953 429 55 13 775 1189 555464458 555464047 2.500000e-73 287.0
42 TraesCS3A01G157800 chr5D 92.053 151 11 1 4096 4245 257502286 257502136 1.550000e-50 211.0
43 TraesCS3A01G157800 chr5D 86.387 191 24 1 2293 2481 491000007 490999817 2.000000e-49 207.0
44 TraesCS3A01G157800 chr5D 91.964 112 7 2 1440 1550 450086655 450086765 7.360000e-34 156.0
45 TraesCS3A01G157800 chr5D 91.228 114 6 4 1440 1550 177377317 177377429 9.520000e-33 152.0
46 TraesCS3A01G157800 chr5D 91.228 114 6 4 1440 1550 255246744 255246856 9.520000e-33 152.0
47 TraesCS3A01G157800 chr5D 89.286 84 6 1 1360 1443 458817416 458817496 9.720000e-18 102.0
48 TraesCS3A01G157800 chr5D 95.312 64 2 1 1257 1320 122198514 122198452 3.500000e-17 100.0
49 TraesCS3A01G157800 chr5D 88.889 81 9 0 1109 1189 370302543 370302463 3.500000e-17 100.0
50 TraesCS3A01G157800 chr5D 97.619 42 1 0 1322 1363 430065230 430065271 7.620000e-09 73.1
51 TraesCS3A01G157800 chr5D 93.333 45 2 1 1322 1366 498655323 498655280 1.280000e-06 65.8
52 TraesCS3A01G157800 chr5B 86.893 206 27 0 2052 2257 605787929 605787724 1.190000e-56 231.0
53 TraesCS3A01G157800 chr5B 93.377 151 9 1 4096 4245 291787004 291786854 7.150000e-54 222.0
54 TraesCS3A01G157800 chr5B 85.864 191 25 1 2293 2481 605787653 605787463 9.320000e-48 202.0
55 TraesCS3A01G157800 chr2D 93.548 155 9 1 4092 4245 215831969 215831815 4.270000e-56 230.0
56 TraesCS3A01G157800 chr1D 94.040 151 8 1 4096 4245 418199582 418199432 1.540000e-55 228.0
57 TraesCS3A01G157800 chr1D 96.875 64 1 1 1257 1320 78965826 78965888 7.510000e-19 106.0
58 TraesCS3A01G157800 chr7D 92.903 155 10 1 4093 4246 617790591 617790745 1.990000e-54 224.0
59 TraesCS3A01G157800 chr7D 95.312 64 2 1 1257 1320 41146563 41146625 3.500000e-17 100.0
60 TraesCS3A01G157800 chr7D 90.385 52 4 1 1322 1373 116986819 116986869 3.550000e-07 67.6
61 TraesCS3A01G157800 chr4A 90.728 151 13 1 4096 4245 105240769 105240619 3.350000e-47 200.0
62 TraesCS3A01G157800 chr2B 87.805 164 17 1 1017 1180 639526095 639525935 7.250000e-44 189.0
63 TraesCS3A01G157800 chr2B 95.455 66 3 0 1257 1322 794694273 794694208 7.510000e-19 106.0
64 TraesCS3A01G157800 chr2B 95.455 66 3 0 1257 1322 794803174 794803109 7.510000e-19 106.0
65 TraesCS3A01G157800 chr2B 95.312 64 3 0 1257 1320 677805527 677805590 9.720000e-18 102.0
66 TraesCS3A01G157800 chr2B 95.000 40 2 0 1322 1361 771821968 771822007 4.590000e-06 63.9
67 TraesCS3A01G157800 chr6D 92.105 114 5 4 1440 1550 333950604 333950492 2.050000e-34 158.0
68 TraesCS3A01G157800 chr6D 95.312 64 3 0 1257 1320 110874370 110874307 9.720000e-18 102.0
69 TraesCS3A01G157800 chr4D 92.105 114 5 4 1440 1550 494781701 494781813 2.050000e-34 158.0
70 TraesCS3A01G157800 chr4D 91.304 115 5 5 1440 1550 65559667 65559780 9.520000e-33 152.0
71 TraesCS3A01G157800 chr4D 91.228 114 6 4 1440 1550 291827385 291827497 9.520000e-33 152.0
72 TraesCS3A01G157800 chr6A 100.000 40 0 0 1322 1361 616583943 616583904 2.120000e-09 75.0
73 TraesCS3A01G157800 chr6A 97.500 40 1 0 1322 1361 616434224 616434185 9.860000e-08 69.4
74 TraesCS3A01G157800 chr1A 97.500 40 1 0 1322 1361 396427668 396427707 9.860000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G157800 chr3A 155058281 155063765 5484 True 4816.000000 5452 100.000000 1 5485 2 chr3A.!!$R2 5484
1 TraesCS3A01G157800 chr3D 137001851 137007076 5225 False 1354.600000 2043 91.726600 2 5485 5 chr3D.!!$F2 5483
2 TraesCS3A01G157800 chr3B 200479861 200485282 5421 True 895.885714 1831 90.158571 2 5485 7 chr3B.!!$R3 5483
3 TraesCS3A01G157800 chr3B 420417635 420418213 578 False 302.500000 355 88.397500 1053 1822 2 chr3B.!!$F3 769
4 TraesCS3A01G157800 chr6B 471231096 471231679 583 False 311.000000 370 88.657000 1053 1827 2 chr6B.!!$F1 774

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
421 432 0.041047 CGTTCGTGGTATCGCGGATA 60.041 55.000 9.41 0.0 45.85 2.59 F
1272 1299 0.253160 TGTTACTCCCTCTGGCCCAT 60.253 55.000 0.00 0.0 0.00 4.00 F
1454 1503 1.138266 GCTTATACTCCCGCTGTTCCA 59.862 52.381 0.00 0.0 0.00 3.53 F
2919 3462 1.202486 TGACTTGTCGTGGTCTGTTCC 60.202 52.381 0.00 0.0 34.01 3.62 F
3464 4008 1.065851 GCTAAGCCGAGTCTGAGTACC 59.934 57.143 0.00 0.0 0.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1345 1372 0.697079 ACAGTACTCCCTCCGTCTCA 59.303 55.000 0.00 0.00 0.00 3.27 R
2861 3403 0.686789 GGGGCAAGCCAGTTCAAAAT 59.313 50.000 13.87 0.00 37.98 1.82 R
3244 3787 2.038295 GGCTGAGGACTGAGGATTATGG 59.962 54.545 0.00 0.00 0.00 2.74 R
3907 4460 0.040336 CTTGCAGCTGCTCAACTGTG 60.040 55.000 36.61 14.88 42.66 3.66 R
4604 5163 1.981256 TTGCTCCTCTTGTTTGGGAC 58.019 50.000 0.00 0.00 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.028567 CCGCTTCTCTTTCACCTCTCTT 60.029 50.000 0.00 0.00 0.00 2.85
102 108 1.146358 GCGAGATGGTAAGCACGACC 61.146 60.000 0.00 0.00 37.49 4.79
257 263 1.643832 GGTTTGCGATCGATCTGGC 59.356 57.895 21.57 18.86 0.00 4.85
402 413 1.358046 GCGCCATTTCTCATCAGCC 59.642 57.895 0.00 0.00 0.00 4.85
404 415 1.091771 CGCCATTTCTCATCAGCCGT 61.092 55.000 0.00 0.00 0.00 5.68
421 432 0.041047 CGTTCGTGGTATCGCGGATA 60.041 55.000 9.41 0.00 45.85 2.59
422 433 1.400629 CGTTCGTGGTATCGCGGATAT 60.401 52.381 9.41 0.00 45.85 1.63
423 434 2.159667 CGTTCGTGGTATCGCGGATATA 60.160 50.000 9.41 0.00 45.85 0.86
431 442 3.364764 GGTATCGCGGATATAGTATCGGC 60.365 52.174 6.13 15.42 39.85 5.54
524 535 0.877071 CTGCGATGAAGTGGCTGTTT 59.123 50.000 0.00 0.00 32.08 2.83
536 547 1.207089 TGGCTGTTTCTAGGGATCGTG 59.793 52.381 0.00 0.00 0.00 4.35
583 602 2.668457 CTGCGTTCACAGATTAGTGGAC 59.332 50.000 0.00 0.00 43.21 4.02
608 627 5.587043 TGAAATTTCGTTAATGGAGCCGTAT 59.413 36.000 13.34 0.00 0.00 3.06
611 630 2.816689 TCGTTAATGGAGCCGTATGTG 58.183 47.619 0.00 0.00 0.00 3.21
612 631 2.166870 TCGTTAATGGAGCCGTATGTGT 59.833 45.455 0.00 0.00 0.00 3.72
614 633 3.000925 CGTTAATGGAGCCGTATGTGTTC 59.999 47.826 0.00 0.00 0.00 3.18
659 680 1.336887 ACGTGAATCAAGGTCAGTCGG 60.337 52.381 0.75 0.00 0.00 4.79
663 684 0.687354 AATCAAGGTCAGTCGGTGCT 59.313 50.000 0.00 0.00 0.00 4.40
667 688 1.166531 AAGGTCAGTCGGTGCTTTGC 61.167 55.000 0.00 0.00 0.00 3.68
691 712 6.235642 CGATACAATTTGTTGCAAAATGCTC 58.764 36.000 7.45 6.30 45.31 4.26
698 719 2.034939 TGTTGCAAAATGCTCTGGTGAG 59.965 45.455 0.00 0.00 45.31 3.51
706 727 3.550437 ATGCTCTGGTGAGTACATTCC 57.450 47.619 0.00 0.00 42.13 3.01
707 728 2.256306 TGCTCTGGTGAGTACATTCCA 58.744 47.619 0.00 0.00 42.13 3.53
709 730 3.201290 GCTCTGGTGAGTACATTCCATG 58.799 50.000 0.00 0.00 42.13 3.66
714 735 2.930040 GGTGAGTACATTCCATGTGTCG 59.070 50.000 0.00 0.00 44.60 4.35
724 749 0.884259 CCATGTGTCGTCACCAGCAA 60.884 55.000 10.28 0.00 43.26 3.91
782 808 3.580039 TCATCATGGCCATAGTCTCTGA 58.420 45.455 20.30 12.02 0.00 3.27
783 809 3.577415 TCATCATGGCCATAGTCTCTGAG 59.423 47.826 20.30 2.34 0.00 3.35
787 813 0.392336 GGCCATAGTCTCTGAGCCTG 59.608 60.000 0.00 0.00 37.42 4.85
828 854 4.514441 GGAGAATATGCTGGACATTCACTG 59.486 45.833 3.04 0.00 40.38 3.66
915 942 8.136165 ACTATACCGAAGTGAACATATCAGAAC 58.864 37.037 0.00 0.00 39.19 3.01
1164 1191 3.624861 ACGAATCATCAAGGCTGTCAATC 59.375 43.478 0.00 0.00 0.00 2.67
1201 1228 8.419442 CGTACTATTTCCAGTATCCTTAACCTT 58.581 37.037 0.00 0.00 33.71 3.50
1229 1256 6.016024 TGTCATCTGCAGCATTTTAGTTTCTT 60.016 34.615 9.47 0.00 0.00 2.52
1230 1257 6.525976 GTCATCTGCAGCATTTTAGTTTCTTC 59.474 38.462 9.47 0.00 0.00 2.87
1236 1263 5.387752 GCAGCATTTTAGTTTCTTCTTTGCG 60.388 40.000 0.00 0.00 33.04 4.85
1265 1292 5.087323 TGTGATCTTTCTGTTACTCCCTCT 58.913 41.667 0.00 0.00 0.00 3.69
1267 1294 4.467795 TGATCTTTCTGTTACTCCCTCTGG 59.532 45.833 0.00 0.00 0.00 3.86
1268 1295 2.567615 TCTTTCTGTTACTCCCTCTGGC 59.432 50.000 0.00 0.00 0.00 4.85
1271 1298 0.909610 CTGTTACTCCCTCTGGCCCA 60.910 60.000 0.00 0.00 0.00 5.36
1272 1299 0.253160 TGTTACTCCCTCTGGCCCAT 60.253 55.000 0.00 0.00 0.00 4.00
1274 1301 2.124411 GTTACTCCCTCTGGCCCATAA 58.876 52.381 0.00 0.00 0.00 1.90
1277 1304 3.297994 ACTCCCTCTGGCCCATAATAT 57.702 47.619 0.00 0.00 0.00 1.28
1278 1305 4.435977 ACTCCCTCTGGCCCATAATATA 57.564 45.455 0.00 0.00 0.00 0.86
1279 1306 4.774779 ACTCCCTCTGGCCCATAATATAA 58.225 43.478 0.00 0.00 0.00 0.98
1281 1308 5.032846 CTCCCTCTGGCCCATAATATAAGA 58.967 45.833 0.00 0.00 0.00 2.10
1282 1309 5.613826 TCCCTCTGGCCCATAATATAAGAT 58.386 41.667 0.00 0.00 0.00 2.40
1283 1310 5.667626 TCCCTCTGGCCCATAATATAAGATC 59.332 44.000 0.00 0.00 0.00 2.75
1284 1311 5.453903 CCCTCTGGCCCATAATATAAGATCG 60.454 48.000 0.00 0.00 0.00 3.69
1285 1312 5.129485 CCTCTGGCCCATAATATAAGATCGT 59.871 44.000 0.00 0.00 0.00 3.73
1286 1313 6.352222 CCTCTGGCCCATAATATAAGATCGTT 60.352 42.308 0.00 0.00 0.00 3.85
1287 1314 7.016153 TCTGGCCCATAATATAAGATCGTTT 57.984 36.000 0.00 0.00 0.00 3.60
1289 1316 7.390440 TCTGGCCCATAATATAAGATCGTTTTG 59.610 37.037 0.00 0.00 0.00 2.44
1290 1317 6.072175 TGGCCCATAATATAAGATCGTTTTGC 60.072 38.462 0.00 0.00 0.00 3.68
1291 1318 6.072175 GGCCCATAATATAAGATCGTTTTGCA 60.072 38.462 0.00 0.00 0.00 4.08
1292 1319 7.367285 GCCCATAATATAAGATCGTTTTGCAA 58.633 34.615 0.00 0.00 0.00 4.08
1293 1320 7.538678 GCCCATAATATAAGATCGTTTTGCAAG 59.461 37.037 0.00 0.00 0.00 4.01
1294 1321 7.538678 CCCATAATATAAGATCGTTTTGCAAGC 59.461 37.037 0.00 0.00 0.00 4.01
1295 1322 8.292448 CCATAATATAAGATCGTTTTGCAAGCT 58.708 33.333 0.00 0.00 0.00 3.74
1297 1324 6.683974 ATATAAGATCGTTTTGCAAGCTGT 57.316 33.333 0.00 0.00 0.00 4.40
1299 1326 3.715628 AGATCGTTTTGCAAGCTGTTT 57.284 38.095 0.00 0.00 0.00 2.83
1300 1327 4.045636 AGATCGTTTTGCAAGCTGTTTT 57.954 36.364 0.00 0.00 0.00 2.43
1317 1344 5.181690 TGTTTTAGCTTGCAAAACGATCT 57.818 34.783 15.21 0.00 44.91 2.75
1319 1346 6.730175 TGTTTTAGCTTGCAAAACGATCTTA 58.270 32.000 15.21 0.00 44.91 2.10
1320 1347 6.635239 TGTTTTAGCTTGCAAAACGATCTTAC 59.365 34.615 15.21 0.00 44.91 2.34
1321 1348 5.933187 TTAGCTTGCAAAACGATCTTACA 57.067 34.783 0.00 0.00 0.00 2.41
1322 1349 4.410492 AGCTTGCAAAACGATCTTACAG 57.590 40.909 0.00 0.00 0.00 2.74
1323 1350 2.911102 GCTTGCAAAACGATCTTACAGC 59.089 45.455 0.00 0.00 0.00 4.40
1325 1352 4.787598 CTTGCAAAACGATCTTACAGCTT 58.212 39.130 0.00 0.00 0.00 3.74
1326 1353 4.145876 TGCAAAACGATCTTACAGCTTG 57.854 40.909 0.00 0.00 0.00 4.01
1327 1354 2.911102 GCAAAACGATCTTACAGCTTGC 59.089 45.455 0.00 0.00 0.00 4.01
1329 1356 4.536065 CAAAACGATCTTACAGCTTGCAA 58.464 39.130 0.00 0.00 0.00 4.08
1363 1412 2.060050 ATGAGACGGAGGGAGTACTG 57.940 55.000 0.00 0.00 0.00 2.74
1379 1428 6.750501 GGGAGTACTGTTTTGTCAAAGTTTTC 59.249 38.462 0.00 0.00 0.00 2.29
1438 1487 8.190326 TGCAGCCTAATTAGATAACTAGCTTA 57.810 34.615 14.28 1.74 0.00 3.09
1439 1488 8.816894 TGCAGCCTAATTAGATAACTAGCTTAT 58.183 33.333 14.28 0.00 0.00 1.73
1447 1496 5.900865 AGATAACTAGCTTATACTCCCGC 57.099 43.478 0.00 0.00 0.00 6.13
1448 1497 5.572252 AGATAACTAGCTTATACTCCCGCT 58.428 41.667 0.00 0.00 36.56 5.52
1449 1498 5.416326 AGATAACTAGCTTATACTCCCGCTG 59.584 44.000 0.00 0.00 34.14 5.18
1450 1499 2.946785 ACTAGCTTATACTCCCGCTGT 58.053 47.619 0.00 0.00 34.14 4.40
1451 1500 3.297736 ACTAGCTTATACTCCCGCTGTT 58.702 45.455 0.00 0.00 34.14 3.16
1452 1501 2.892784 AGCTTATACTCCCGCTGTTC 57.107 50.000 0.00 0.00 0.00 3.18
1453 1502 1.413077 AGCTTATACTCCCGCTGTTCC 59.587 52.381 0.00 0.00 0.00 3.62
1454 1503 1.138266 GCTTATACTCCCGCTGTTCCA 59.862 52.381 0.00 0.00 0.00 3.53
1455 1504 2.419574 GCTTATACTCCCGCTGTTCCAA 60.420 50.000 0.00 0.00 0.00 3.53
1456 1505 3.869065 CTTATACTCCCGCTGTTCCAAA 58.131 45.455 0.00 0.00 0.00 3.28
1457 1506 4.451900 CTTATACTCCCGCTGTTCCAAAT 58.548 43.478 0.00 0.00 0.00 2.32
1458 1507 2.871096 TACTCCCGCTGTTCCAAATT 57.129 45.000 0.00 0.00 0.00 1.82
1459 1508 2.871096 ACTCCCGCTGTTCCAAATTA 57.129 45.000 0.00 0.00 0.00 1.40
1460 1509 2.433436 ACTCCCGCTGTTCCAAATTAC 58.567 47.619 0.00 0.00 0.00 1.89
1461 1510 2.039879 ACTCCCGCTGTTCCAAATTACT 59.960 45.455 0.00 0.00 0.00 2.24
1462 1511 2.678336 CTCCCGCTGTTCCAAATTACTC 59.322 50.000 0.00 0.00 0.00 2.59
1463 1512 1.396996 CCCGCTGTTCCAAATTACTCG 59.603 52.381 0.00 0.00 0.00 4.18
1464 1513 2.073816 CCGCTGTTCCAAATTACTCGT 58.926 47.619 0.00 0.00 0.00 4.18
1465 1514 2.093783 CCGCTGTTCCAAATTACTCGTC 59.906 50.000 0.00 0.00 0.00 4.20
1466 1515 2.222508 CGCTGTTCCAAATTACTCGTCG 60.223 50.000 0.00 0.00 0.00 5.12
1467 1516 2.735134 GCTGTTCCAAATTACTCGTCGT 59.265 45.455 0.00 0.00 0.00 4.34
1468 1517 3.423123 GCTGTTCCAAATTACTCGTCGTG 60.423 47.826 0.00 0.00 0.00 4.35
1469 1518 3.979948 TGTTCCAAATTACTCGTCGTGA 58.020 40.909 0.56 0.00 0.00 4.35
1470 1519 4.562082 TGTTCCAAATTACTCGTCGTGAT 58.438 39.130 0.56 0.00 0.00 3.06
1471 1520 4.992319 TGTTCCAAATTACTCGTCGTGATT 59.008 37.500 0.56 0.00 33.69 2.57
1472 1521 5.467399 TGTTCCAAATTACTCGTCGTGATTT 59.533 36.000 0.56 5.16 41.02 2.17
1473 1522 6.017770 TGTTCCAAATTACTCGTCGTGATTTT 60.018 34.615 0.56 0.00 39.10 1.82
1474 1523 7.171167 TGTTCCAAATTACTCGTCGTGATTTTA 59.829 33.333 0.56 0.02 39.10 1.52
1475 1524 7.285783 TCCAAATTACTCGTCGTGATTTTAG 57.714 36.000 0.56 4.32 39.10 1.85
1476 1525 6.869913 TCCAAATTACTCGTCGTGATTTTAGT 59.130 34.615 0.56 0.00 39.10 2.24
1477 1526 7.385752 TCCAAATTACTCGTCGTGATTTTAGTT 59.614 33.333 0.56 0.00 39.10 2.24
1478 1527 7.686938 CCAAATTACTCGTCGTGATTTTAGTTC 59.313 37.037 0.56 0.00 39.10 3.01
1479 1528 7.878477 AATTACTCGTCGTGATTTTAGTTCA 57.122 32.000 0.56 0.00 28.37 3.18
1480 1529 7.878477 ATTACTCGTCGTGATTTTAGTTCAA 57.122 32.000 0.56 0.00 0.00 2.69
1481 1530 7.697352 TTACTCGTCGTGATTTTAGTTCAAA 57.303 32.000 0.56 0.00 0.00 2.69
1482 1531 6.780706 ACTCGTCGTGATTTTAGTTCAAAT 57.219 33.333 0.56 0.00 0.00 2.32
1483 1532 7.186021 ACTCGTCGTGATTTTAGTTCAAATT 57.814 32.000 0.56 0.00 0.00 1.82
1484 1533 7.636326 ACTCGTCGTGATTTTAGTTCAAATTT 58.364 30.769 0.56 0.00 0.00 1.82
1485 1534 7.586300 ACTCGTCGTGATTTTAGTTCAAATTTG 59.414 33.333 12.15 12.15 0.00 2.32
1486 1535 7.631822 TCGTCGTGATTTTAGTTCAAATTTGA 58.368 30.769 16.91 16.91 34.92 2.69
1487 1536 8.123575 TCGTCGTGATTTTAGTTCAAATTTGAA 58.876 29.630 26.01 26.01 44.31 2.69
1500 1549 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
1501 1550 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
1502 1551 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
1503 1552 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
1504 1553 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
1505 1554 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
1506 1555 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
1507 1556 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
1508 1557 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
1509 1558 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
1510 1559 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
1511 1560 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
1512 1561 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
1513 1562 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
1514 1563 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
1515 1564 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
1516 1565 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
1517 1566 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
1518 1567 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
1519 1568 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1520 1569 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1521 1570 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
1522 1571 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
1566 1615 8.812513 TGTTTATGATGATCTGTGATTCCTTT 57.187 30.769 0.00 0.00 0.00 3.11
1646 1695 2.353803 CCTGTACAAGTCTAGGCCACAC 60.354 54.545 5.01 0.00 0.00 3.82
1662 1711 9.725019 CTAGGCCACACATTTAAATATCAGATA 57.275 33.333 5.01 0.00 0.00 1.98
1690 1741 9.846248 AAGGAGAACAATTAATTTTTCATCTCG 57.154 29.630 22.68 3.18 33.35 4.04
1699 1750 9.696917 AATTAATTTTTCATCTCGAAGCAGTTT 57.303 25.926 0.00 0.00 34.32 2.66
1712 1763 2.963432 AGCAGTTTTGTGGCATAATGC 58.037 42.857 11.61 11.61 44.08 3.56
1767 1818 9.967451 TTGTATAAGAATTGAAATCACCTGGTA 57.033 29.630 0.00 0.00 0.00 3.25
1794 1845 3.116079 AGCATTTCAAACAGCCAAAGG 57.884 42.857 0.00 0.00 0.00 3.11
1822 1881 2.562738 ACTGCTTATGTGGGAAAAAGGC 59.437 45.455 0.00 0.00 0.00 4.35
1844 1903 6.769822 AGGCTGGTGACTTGAATAATGAATAG 59.230 38.462 0.00 0.00 0.00 1.73
1846 1905 7.283127 GGCTGGTGACTTGAATAATGAATAGAA 59.717 37.037 0.00 0.00 0.00 2.10
1847 1906 8.341173 GCTGGTGACTTGAATAATGAATAGAAG 58.659 37.037 0.00 0.00 0.00 2.85
1868 1927 2.959030 GACACTTTCTTGGGCCTTTTCT 59.041 45.455 4.53 0.00 0.00 2.52
1877 1936 2.328319 TGGGCCTTTTCTCTTTTGCAT 58.672 42.857 4.53 0.00 0.00 3.96
1936 2386 7.415229 CACCATCTGTCTTCATGATACATTTG 58.585 38.462 10.79 10.79 0.00 2.32
1938 2388 8.267183 ACCATCTGTCTTCATGATACATTTGTA 58.733 33.333 10.79 0.00 34.67 2.41
1996 2446 5.700722 TGCGAATAGTATACGTGGAGAAT 57.299 39.130 0.00 0.00 0.00 2.40
2005 2455 6.750148 AGTATACGTGGAGAATCAAATCCTC 58.250 40.000 0.00 0.00 36.25 3.71
2006 2456 5.878406 ATACGTGGAGAATCAAATCCTCT 57.122 39.130 0.00 0.00 36.25 3.69
2009 2459 4.223923 ACGTGGAGAATCAAATCCTCTTCT 59.776 41.667 0.00 0.00 36.25 2.85
2031 2481 6.362248 TCTGTAGTTTTAGCCTGTTTTCCTT 58.638 36.000 0.00 0.00 0.00 3.36
2057 2507 8.243426 TGTAAAATTATCATGGCACTCTTGTTC 58.757 33.333 0.00 0.00 0.00 3.18
2100 2550 4.159693 AGTTACATCATTGAGAGCCGTGTA 59.840 41.667 0.00 0.00 0.00 2.90
2133 2583 3.973206 ATGTGTGACCGTTCTTATCCA 57.027 42.857 0.00 0.00 0.00 3.41
2193 2643 2.571653 TGAATTCGAGAGGGTCAATGGT 59.428 45.455 0.04 0.00 0.00 3.55
2304 2755 6.782988 AGCTTCTTATTAGCTACTGGGTGATA 59.217 38.462 0.00 0.00 46.66 2.15
2349 2800 7.989741 AGATACATTCATACAGAAAACCAGGAG 59.010 37.037 0.00 0.00 40.22 3.69
2353 2804 5.551233 TTCATACAGAAAACCAGGAGACTG 58.449 41.667 0.00 0.00 45.39 3.51
2542 3077 9.939802 CATCATTATGTCTTCTAGATTGATGGA 57.060 33.333 0.00 0.00 36.12 3.41
2557 3092 3.835779 TGATGGACGTGCAAATGATTTG 58.164 40.909 15.51 13.32 43.44 2.32
2615 3156 3.244457 ACCTAAAAGGCACCAGTGAGTAC 60.244 47.826 0.99 0.00 39.63 2.73
2632 3173 4.897076 TGAGTACAGTTTCTGTTAGGTCCA 59.103 41.667 7.70 0.00 42.59 4.02
2643 3184 7.504924 TTCTGTTAGGTCCACAAAGTAATTG 57.495 36.000 0.00 0.00 44.95 2.32
2710 3252 8.986477 ATTATTACACATGCTTCTTTTGGAAC 57.014 30.769 0.00 0.00 0.00 3.62
2717 3259 1.819288 GCTTCTTTTGGAACCCCTAGC 59.181 52.381 0.00 0.00 0.00 3.42
2718 3260 2.817839 GCTTCTTTTGGAACCCCTAGCA 60.818 50.000 0.00 0.00 0.00 3.49
2720 3262 1.777878 TCTTTTGGAACCCCTAGCACA 59.222 47.619 0.00 0.00 0.00 4.57
2758 3300 5.565592 TGACTGCCTTAATGCTATGTTTG 57.434 39.130 4.32 0.00 0.00 2.93
2774 3316 7.775093 TGCTATGTTTGCTTGATACTCCTATTT 59.225 33.333 0.00 0.00 0.00 1.40
2798 3340 4.556942 TGAGACATGTTCAAGCTTTGTG 57.443 40.909 5.48 0.00 0.00 3.33
2804 3346 3.523606 TGTTCAAGCTTTGTGTGCATT 57.476 38.095 0.00 0.00 0.00 3.56
2811 3353 5.691305 TCAAGCTTTGTGTGCATTATTGAAC 59.309 36.000 0.00 0.00 31.27 3.18
2877 3420 3.552604 TCGTATTTTGAACTGGCTTGC 57.447 42.857 0.00 0.00 0.00 4.01
2909 3452 2.615493 CCCCTTTAGCATGACTTGTCGT 60.615 50.000 0.00 0.00 0.00 4.34
2910 3453 2.416547 CCCTTTAGCATGACTTGTCGTG 59.583 50.000 16.18 16.18 0.00 4.35
2919 3462 1.202486 TGACTTGTCGTGGTCTGTTCC 60.202 52.381 0.00 0.00 34.01 3.62
2921 3464 1.202533 ACTTGTCGTGGTCTGTTCCAG 60.203 52.381 0.00 0.00 38.23 3.86
2929 3472 4.464951 TCGTGGTCTGTTCCAGTGTATTAT 59.535 41.667 0.00 0.00 38.23 1.28
2930 3473 5.046878 TCGTGGTCTGTTCCAGTGTATTATT 60.047 40.000 0.00 0.00 38.23 1.40
2931 3474 5.063438 CGTGGTCTGTTCCAGTGTATTATTG 59.937 44.000 0.00 0.00 38.23 1.90
2932 3475 4.941263 TGGTCTGTTCCAGTGTATTATTGC 59.059 41.667 0.00 0.00 33.19 3.56
2933 3476 4.335594 GGTCTGTTCCAGTGTATTATTGCC 59.664 45.833 0.00 0.00 32.61 4.52
2934 3477 5.186198 GTCTGTTCCAGTGTATTATTGCCT 58.814 41.667 0.00 0.00 32.61 4.75
2935 3478 6.346096 GTCTGTTCCAGTGTATTATTGCCTA 58.654 40.000 0.00 0.00 32.61 3.93
2936 3479 6.992715 GTCTGTTCCAGTGTATTATTGCCTAT 59.007 38.462 0.00 0.00 32.61 2.57
2937 3480 6.992123 TCTGTTCCAGTGTATTATTGCCTATG 59.008 38.462 0.00 0.00 32.61 2.23
2938 3481 6.658849 TGTTCCAGTGTATTATTGCCTATGT 58.341 36.000 0.00 0.00 0.00 2.29
2939 3482 7.116075 TGTTCCAGTGTATTATTGCCTATGTT 58.884 34.615 0.00 0.00 0.00 2.71
2940 3483 7.613801 TGTTCCAGTGTATTATTGCCTATGTTT 59.386 33.333 0.00 0.00 0.00 2.83
2941 3484 8.466798 GTTCCAGTGTATTATTGCCTATGTTTT 58.533 33.333 0.00 0.00 0.00 2.43
2942 3485 8.588290 TCCAGTGTATTATTGCCTATGTTTTT 57.412 30.769 0.00 0.00 0.00 1.94
2943 3486 9.688091 TCCAGTGTATTATTGCCTATGTTTTTA 57.312 29.630 0.00 0.00 0.00 1.52
3295 3838 9.467258 TCAATTAAGACAATTGCTCAAAGAAAG 57.533 29.630 5.05 0.00 37.50 2.62
3328 3871 3.690460 CCCTTTGCAGAGGTTAGTCAAT 58.310 45.455 21.09 0.00 34.88 2.57
3397 3940 1.689273 AGGATCTCAATCGCCAGGTAC 59.311 52.381 0.00 0.00 32.24 3.34
3398 3941 1.689273 GGATCTCAATCGCCAGGTACT 59.311 52.381 0.00 0.00 32.81 2.73
3400 3943 5.060450 GGATCTCAATCGCCAGGTACTGT 62.060 52.174 0.00 0.00 43.36 3.55
3401 3944 6.811810 GGATCTCAATCGCCAGGTACTGTC 62.812 54.167 0.00 0.00 43.36 3.51
3456 4000 1.086634 CCAAGCAGCTAAGCCGAGTC 61.087 60.000 0.00 0.00 34.23 3.36
3464 4008 1.065851 GCTAAGCCGAGTCTGAGTACC 59.934 57.143 0.00 0.00 0.00 3.34
3477 4021 6.231211 AGTCTGAGTACCGAAACAAATGATT 58.769 36.000 0.00 0.00 0.00 2.57
3478 4022 6.710744 AGTCTGAGTACCGAAACAAATGATTT 59.289 34.615 0.00 0.00 0.00 2.17
3483 4027 9.004717 TGAGTACCGAAACAAATGATTTATTCA 57.995 29.630 12.90 0.00 39.12 2.57
3485 4029 9.787532 AGTACCGAAACAAATGATTTATTCATG 57.212 29.630 12.90 0.00 44.51 3.07
3490 4034 8.382130 CGAAACAAATGATTTATTCATGTTGGG 58.618 33.333 12.90 0.00 44.51 4.12
3495 4039 5.327616 TGATTTATTCATGTTGGGCACAG 57.672 39.130 0.00 0.00 39.40 3.66
3500 4044 2.118313 TCATGTTGGGCACAGAGATG 57.882 50.000 0.00 0.00 39.40 2.90
3507 4051 1.764723 TGGGCACAGAGATGAGTATGG 59.235 52.381 0.00 0.00 0.00 2.74
3521 4065 3.701542 TGAGTATGGCTGGTAGTCTTCTG 59.298 47.826 0.00 0.00 0.00 3.02
3522 4066 3.702045 GAGTATGGCTGGTAGTCTTCTGT 59.298 47.826 0.00 0.00 0.00 3.41
3525 4069 3.126001 TGGCTGGTAGTCTTCTGTTTG 57.874 47.619 0.00 0.00 0.00 2.93
3526 4070 2.438021 TGGCTGGTAGTCTTCTGTTTGT 59.562 45.455 0.00 0.00 0.00 2.83
3577 4125 7.936584 AGATTCTTGAGGTAGATCTACTTTCG 58.063 38.462 27.68 14.84 36.36 3.46
3607 4155 3.439857 AAGCATCACAGGGCTCTTTTA 57.560 42.857 0.00 0.00 40.01 1.52
3614 4162 5.241403 TCACAGGGCTCTTTTATTCTCAA 57.759 39.130 0.00 0.00 0.00 3.02
3708 4260 5.891551 AGCCCTCTTTTTCTCAAACTTAACA 59.108 36.000 0.00 0.00 0.00 2.41
3710 4262 6.475727 GCCCTCTTTTTCTCAAACTTAACAAC 59.524 38.462 0.00 0.00 0.00 3.32
3744 4296 9.826574 TTCCATAATTAGATACTTGCTACGTTT 57.173 29.630 0.00 0.00 0.00 3.60
3777 4329 9.083422 TCAGTGGATTATGGTAATTTTGTTTGA 57.917 29.630 0.00 0.00 0.00 2.69
3862 4415 4.155462 GCTCTCTTTTCACATCAGATTGCA 59.845 41.667 0.00 0.00 0.00 4.08
3868 4421 8.975410 TCTTTTCACATCAGATTGCAAAATAG 57.025 30.769 1.71 0.00 0.00 1.73
3872 4425 7.628769 TCACATCAGATTGCAAAATAGCTTA 57.371 32.000 1.71 0.00 34.99 3.09
3873 4426 8.054152 TCACATCAGATTGCAAAATAGCTTAA 57.946 30.769 1.71 0.00 34.99 1.85
3883 4436 5.183713 TGCAAAATAGCTTAAGCACATCACT 59.816 36.000 28.39 9.16 45.16 3.41
3884 4437 6.095377 GCAAAATAGCTTAAGCACATCACTT 58.905 36.000 28.39 8.42 45.16 3.16
3907 4460 3.542712 TTTTTGACAGAGAAGCGCATC 57.457 42.857 11.47 7.57 0.00 3.91
3954 4509 9.194972 TGCATAATTATTGTCATTTCCCTTGTA 57.805 29.630 0.00 0.00 0.00 2.41
3955 4510 9.463443 GCATAATTATTGTCATTTCCCTTGTAC 57.537 33.333 0.00 0.00 0.00 2.90
3958 4513 8.650143 AATTATTGTCATTTCCCTTGTACAGT 57.350 30.769 0.00 0.00 0.00 3.55
3959 4514 9.747898 AATTATTGTCATTTCCCTTGTACAGTA 57.252 29.630 0.00 0.00 0.00 2.74
3965 4520 6.935208 GTCATTTCCCTTGTACAGTACTTTCT 59.065 38.462 12.07 0.00 0.00 2.52
3983 4538 9.569167 GTACTTTCTATTTTAGTTTGATTGGCC 57.431 33.333 0.00 0.00 0.00 5.36
3998 4553 2.300956 TGGCCACTTCCAGCAAATTA 57.699 45.000 0.00 0.00 0.00 1.40
4013 4568 5.456497 CAGCAAATTATGTTGGCTGTAATCG 59.544 40.000 11.81 0.00 36.68 3.34
4087 4643 1.198637 GATCTGCCACAAACTGCTCAC 59.801 52.381 0.00 0.00 0.00 3.51
4096 4652 3.313526 CACAAACTGCTCACTAGTGCTTT 59.686 43.478 18.45 7.13 35.37 3.51
4097 4653 3.313526 ACAAACTGCTCACTAGTGCTTTG 59.686 43.478 18.45 18.34 36.39 2.77
4098 4654 2.918712 ACTGCTCACTAGTGCTTTGT 57.081 45.000 18.45 11.04 35.37 2.83
4099 4655 3.199880 ACTGCTCACTAGTGCTTTGTT 57.800 42.857 18.45 0.00 35.37 2.83
4100 4656 3.545703 ACTGCTCACTAGTGCTTTGTTT 58.454 40.909 18.45 0.00 35.37 2.83
4101 4657 3.947834 ACTGCTCACTAGTGCTTTGTTTT 59.052 39.130 18.45 0.00 35.37 2.43
4102 4658 4.399303 ACTGCTCACTAGTGCTTTGTTTTT 59.601 37.500 18.45 0.00 35.37 1.94
4103 4659 5.588648 ACTGCTCACTAGTGCTTTGTTTTTA 59.411 36.000 18.45 0.00 35.37 1.52
4104 4660 6.094881 ACTGCTCACTAGTGCTTTGTTTTTAA 59.905 34.615 18.45 0.00 35.37 1.52
4105 4661 6.494842 TGCTCACTAGTGCTTTGTTTTTAAG 58.505 36.000 18.45 6.71 35.37 1.85
4106 4662 5.915196 GCTCACTAGTGCTTTGTTTTTAAGG 59.085 40.000 18.45 0.00 0.00 2.69
4107 4663 5.827666 TCACTAGTGCTTTGTTTTTAAGGC 58.172 37.500 18.45 0.00 33.72 4.35
4108 4664 4.675114 CACTAGTGCTTTGTTTTTAAGGCG 59.325 41.667 10.54 0.00 35.64 5.52
4109 4665 3.793797 AGTGCTTTGTTTTTAAGGCGT 57.206 38.095 0.00 0.00 35.64 5.68
4110 4666 3.702330 AGTGCTTTGTTTTTAAGGCGTC 58.298 40.909 0.00 0.00 35.64 5.19
4111 4667 2.792674 GTGCTTTGTTTTTAAGGCGTCC 59.207 45.455 0.00 0.00 35.64 4.79
4112 4668 2.691011 TGCTTTGTTTTTAAGGCGTCCT 59.309 40.909 0.00 0.00 35.64 3.85
4113 4669 3.049912 GCTTTGTTTTTAAGGCGTCCTG 58.950 45.455 0.00 0.00 32.13 3.86
4114 4670 2.785713 TTGTTTTTAAGGCGTCCTGC 57.214 45.000 0.00 0.00 45.38 4.85
4128 4684 4.823276 CTGCCTAGGACGCTTGAG 57.177 61.111 14.75 0.00 0.00 3.02
4129 4685 1.520342 CTGCCTAGGACGCTTGAGC 60.520 63.158 14.75 0.00 37.78 4.26
4147 4703 1.643832 CGATAAGGCGCCTTTCAGC 59.356 57.895 43.93 29.30 37.47 4.26
4155 4711 3.981308 GCCTTTCAGCGCCTTACA 58.019 55.556 2.29 0.00 0.00 2.41
4156 4712 2.253513 GCCTTTCAGCGCCTTACAA 58.746 52.632 2.29 0.00 0.00 2.41
4157 4713 0.596082 GCCTTTCAGCGCCTTACAAA 59.404 50.000 2.29 0.00 0.00 2.83
4158 4714 1.202348 GCCTTTCAGCGCCTTACAAAT 59.798 47.619 2.29 0.00 0.00 2.32
4159 4715 2.422127 GCCTTTCAGCGCCTTACAAATA 59.578 45.455 2.29 0.00 0.00 1.40
4160 4716 3.066760 GCCTTTCAGCGCCTTACAAATAT 59.933 43.478 2.29 0.00 0.00 1.28
4161 4717 4.601019 CCTTTCAGCGCCTTACAAATATG 58.399 43.478 2.29 0.00 0.00 1.78
4162 4718 3.691049 TTCAGCGCCTTACAAATATGC 57.309 42.857 2.29 0.00 0.00 3.14
4163 4719 1.946768 TCAGCGCCTTACAAATATGCC 59.053 47.619 2.29 0.00 0.00 4.40
4164 4720 1.001378 CAGCGCCTTACAAATATGCCC 60.001 52.381 2.29 0.00 0.00 5.36
4165 4721 0.040425 GCGCCTTACAAATATGCCCG 60.040 55.000 0.00 0.00 0.00 6.13
4166 4722 1.305201 CGCCTTACAAATATGCCCGT 58.695 50.000 0.00 0.00 0.00 5.28
4167 4723 1.263217 CGCCTTACAAATATGCCCGTC 59.737 52.381 0.00 0.00 0.00 4.79
4168 4724 2.572290 GCCTTACAAATATGCCCGTCT 58.428 47.619 0.00 0.00 0.00 4.18
4169 4725 2.949644 GCCTTACAAATATGCCCGTCTT 59.050 45.455 0.00 0.00 0.00 3.01
4170 4726 4.131596 GCCTTACAAATATGCCCGTCTTA 58.868 43.478 0.00 0.00 0.00 2.10
4171 4727 4.213482 GCCTTACAAATATGCCCGTCTTAG 59.787 45.833 0.00 0.00 0.00 2.18
4172 4728 4.755123 CCTTACAAATATGCCCGTCTTAGG 59.245 45.833 0.00 0.00 0.00 2.69
4178 4734 2.497770 GCCCGTCTTAGGCGCTTA 59.502 61.111 7.64 0.00 41.41 3.09
4179 4735 1.591863 GCCCGTCTTAGGCGCTTAG 60.592 63.158 7.64 2.20 41.41 2.18
4180 4736 1.067582 CCCGTCTTAGGCGCTTAGG 59.932 63.158 7.64 4.46 0.00 2.69
4217 4773 4.077184 CGGGTGGTGCTCGCCTTA 62.077 66.667 9.43 0.00 45.18 2.69
4218 4774 2.125106 GGGTGGTGCTCGCCTTAG 60.125 66.667 9.43 0.00 45.18 2.18
4219 4775 2.125106 GGTGGTGCTCGCCTTAGG 60.125 66.667 0.00 0.00 42.62 2.69
4220 4776 2.663196 GTGGTGCTCGCCTTAGGT 59.337 61.111 0.00 0.00 0.00 3.08
4221 4777 1.003718 GTGGTGCTCGCCTTAGGTT 60.004 57.895 0.00 0.00 0.00 3.50
4222 4778 1.003839 TGGTGCTCGCCTTAGGTTG 60.004 57.895 0.00 0.00 0.00 3.77
4223 4779 2.399356 GGTGCTCGCCTTAGGTTGC 61.399 63.158 0.00 2.85 0.00 4.17
4224 4780 2.046314 TGCTCGCCTTAGGTTGCC 60.046 61.111 0.00 0.00 0.00 4.52
4225 4781 2.269241 GCTCGCCTTAGGTTGCCT 59.731 61.111 0.00 0.00 37.71 4.75
4226 4782 1.377333 GCTCGCCTTAGGTTGCCTT 60.377 57.895 0.00 0.00 34.61 4.35
4227 4783 0.107848 GCTCGCCTTAGGTTGCCTTA 60.108 55.000 0.00 0.00 34.61 2.69
4228 4784 1.653151 CTCGCCTTAGGTTGCCTTAC 58.347 55.000 0.00 0.00 34.61 2.34
4229 4785 0.251073 TCGCCTTAGGTTGCCTTACC 59.749 55.000 0.00 0.00 38.53 2.85
4230 4786 1.087771 CGCCTTAGGTTGCCTTACCG 61.088 60.000 0.00 0.00 43.21 4.02
4231 4787 1.374343 GCCTTAGGTTGCCTTACCGC 61.374 60.000 0.00 0.00 43.21 5.68
4232 4788 0.746923 CCTTAGGTTGCCTTACCGCC 60.747 60.000 0.00 0.00 43.21 6.13
4233 4789 0.252197 CTTAGGTTGCCTTACCGCCT 59.748 55.000 0.00 0.00 43.21 5.52
4234 4790 0.694196 TTAGGTTGCCTTACCGCCTT 59.306 50.000 0.00 0.00 43.21 4.35
4235 4791 1.570803 TAGGTTGCCTTACCGCCTTA 58.429 50.000 0.00 0.00 43.21 2.69
4236 4792 0.694196 AGGTTGCCTTACCGCCTTAA 59.306 50.000 0.00 0.00 43.21 1.85
4237 4793 1.074244 AGGTTGCCTTACCGCCTTAAA 59.926 47.619 0.00 0.00 43.21 1.52
4238 4794 1.887854 GGTTGCCTTACCGCCTTAAAA 59.112 47.619 0.00 0.00 0.00 1.52
4239 4795 2.296752 GGTTGCCTTACCGCCTTAAAAA 59.703 45.455 0.00 0.00 0.00 1.94
4240 4796 3.311106 GTTGCCTTACCGCCTTAAAAAC 58.689 45.455 0.00 0.00 0.00 2.43
4241 4797 2.584236 TGCCTTACCGCCTTAAAAACA 58.416 42.857 0.00 0.00 0.00 2.83
4242 4798 2.957006 TGCCTTACCGCCTTAAAAACAA 59.043 40.909 0.00 0.00 0.00 2.83
4243 4799 3.574826 TGCCTTACCGCCTTAAAAACAAT 59.425 39.130 0.00 0.00 0.00 2.71
4244 4800 3.924073 GCCTTACCGCCTTAAAAACAATG 59.076 43.478 0.00 0.00 0.00 2.82
4252 4808 7.485810 ACCGCCTTAAAAACAATGGTAATATC 58.514 34.615 0.00 0.00 0.00 1.63
4257 4813 7.860872 CCTTAAAAACAATGGTAATATCTCCGC 59.139 37.037 0.00 0.00 0.00 5.54
4259 4815 2.413837 ACAATGGTAATATCTCCGCGC 58.586 47.619 0.00 0.00 0.00 6.86
4308 4867 5.939764 TTCTGTATCTGCAGTCCTATGTT 57.060 39.130 14.67 0.00 37.70 2.71
4487 5046 4.843728 TCAAGAACAAGATATGGTGACCC 58.156 43.478 0.00 0.00 0.00 4.46
4563 5122 1.618837 TCTACAGCTTATCCCGCATCC 59.381 52.381 0.00 0.00 0.00 3.51
4601 5160 6.834107 AGATTACCTTTTTAGCCGCCTTATA 58.166 36.000 0.00 0.00 0.00 0.98
4604 5163 5.767816 ACCTTTTTAGCCGCCTTATATTG 57.232 39.130 0.00 0.00 0.00 1.90
4645 5205 4.935352 ACAGTAAACCCGTTGTGTAGTA 57.065 40.909 0.00 0.00 0.00 1.82
4646 5206 4.874970 ACAGTAAACCCGTTGTGTAGTAG 58.125 43.478 0.00 0.00 0.00 2.57
4647 5207 4.342092 ACAGTAAACCCGTTGTGTAGTAGT 59.658 41.667 0.00 0.00 0.00 2.73
4839 5403 6.150976 TGCTTTGGTCGAGATGAAATATGTTT 59.849 34.615 0.00 0.00 0.00 2.83
4840 5404 6.470235 GCTTTGGTCGAGATGAAATATGTTTG 59.530 38.462 0.00 0.00 0.00 2.93
4891 5455 7.519809 GCCAACTTCATTTCCAATTTACCAAAC 60.520 37.037 0.00 0.00 0.00 2.93
4941 5511 4.946784 AATTCACACGATTCTAGTTGGC 57.053 40.909 0.00 0.00 0.00 4.52
4944 5514 3.937814 TCACACGATTCTAGTTGGCAAT 58.062 40.909 1.92 0.00 0.00 3.56
4948 5518 4.142902 ACACGATTCTAGTTGGCAATTTCG 60.143 41.667 1.92 8.07 0.00 3.46
4949 5519 3.374058 ACGATTCTAGTTGGCAATTTCGG 59.626 43.478 15.69 2.82 0.00 4.30
4951 5521 4.273480 CGATTCTAGTTGGCAATTTCGGAT 59.727 41.667 1.92 0.00 0.00 4.18
4971 5541 5.297776 CGGATGATTCTAGTTGAAATTGCCT 59.702 40.000 0.00 0.00 38.29 4.75
5035 5606 2.124695 CCCAAACCCCGAGCTAGC 60.125 66.667 6.62 6.62 0.00 3.42
5038 5609 1.296715 CAAACCCCGAGCTAGCAGT 59.703 57.895 18.83 3.01 0.00 4.40
5192 5763 1.114627 CGAGTCCACCTCCATCATGA 58.885 55.000 0.00 0.00 36.82 3.07
5200 5771 1.153309 CTCCATCATGACAGCCGCA 60.153 57.895 0.00 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.894126 AGCGGAAGAAGAGAGAGAACAA 59.106 45.455 0.00 0.00 0.00 2.83
4 5 3.013921 GAGAAGCGGAAGAAGAGAGAGA 58.986 50.000 0.00 0.00 0.00 3.10
38 39 1.006571 GGTTCGCGTTGAGTGAGGA 60.007 57.895 5.77 0.00 40.88 3.71
102 108 4.463788 GTGGCAATGGGGAGGGGG 62.464 72.222 0.00 0.00 0.00 5.40
199 205 2.750166 GACAGAGACGAACAGATCCTGA 59.250 50.000 0.45 0.00 35.18 3.86
328 334 2.820037 GAGGCAGCGGCTACAACC 60.820 66.667 9.17 2.10 38.98 3.77
354 365 0.690192 TGCGTCCCTCATTCCAAAGA 59.310 50.000 0.00 0.00 0.00 2.52
402 413 0.041047 TATCCGCGATACCACGAACG 60.041 55.000 8.23 0.00 35.09 3.95
404 415 3.076621 ACTATATCCGCGATACCACGAA 58.923 45.455 8.23 0.00 35.09 3.85
441 452 3.676093 GAGCAACCTACCTAACTGCTTT 58.324 45.455 0.00 0.00 43.19 3.51
448 459 1.552578 TCAGCGAGCAACCTACCTAA 58.447 50.000 0.00 0.00 0.00 2.69
450 461 0.037232 GTTCAGCGAGCAACCTACCT 60.037 55.000 0.00 0.00 0.00 3.08
524 535 1.043116 CCACTGGCACGATCCCTAGA 61.043 60.000 0.00 0.00 0.00 2.43
536 547 1.978617 CACCCAATCACCCACTGGC 60.979 63.158 0.00 0.00 33.59 4.85
583 602 4.142687 ACGGCTCCATTAACGAAATTTCAG 60.143 41.667 17.99 12.49 0.00 3.02
608 627 3.382227 TGAACACTTAGAGTCCGAACACA 59.618 43.478 0.00 0.00 0.00 3.72
611 630 4.240175 AGTGAACACTTAGAGTCCGAAC 57.760 45.455 1.32 0.00 38.83 3.95
612 631 5.068636 ACTAGTGAACACTTAGAGTCCGAA 58.931 41.667 12.66 0.00 42.54 4.30
614 633 5.447548 GCTACTAGTGAACACTTAGAGTCCG 60.448 48.000 12.66 6.89 42.54 4.79
617 636 5.106634 CGTGCTACTAGTGAACACTTAGAGT 60.107 44.000 12.66 12.12 42.54 3.24
618 637 5.106634 ACGTGCTACTAGTGAACACTTAGAG 60.107 44.000 12.66 7.14 42.54 2.43
619 638 4.758674 ACGTGCTACTAGTGAACACTTAGA 59.241 41.667 12.66 0.00 42.54 2.10
622 641 3.317149 TCACGTGCTACTAGTGAACACTT 59.683 43.478 11.67 2.02 41.30 3.16
623 642 2.882761 TCACGTGCTACTAGTGAACACT 59.117 45.455 11.67 12.10 41.30 3.55
659 680 4.663889 GCAACAAATTGTATCGCAAAGCAC 60.664 41.667 0.00 0.00 40.91 4.40
663 684 5.973651 TTTGCAACAAATTGTATCGCAAA 57.026 30.435 25.58 25.58 43.37 3.68
709 730 2.742053 ACATTATTGCTGGTGACGACAC 59.258 45.455 9.62 9.62 45.27 3.67
714 735 3.788333 ATGCACATTATTGCTGGTGAC 57.212 42.857 0.00 0.00 43.41 3.67
752 778 1.064832 TGGCCATGATGATGACCGAAA 60.065 47.619 0.00 0.00 34.87 3.46
755 781 2.289882 ACTATGGCCATGATGATGACCG 60.290 50.000 29.04 5.82 34.87 4.79
757 783 4.020396 AGAGACTATGGCCATGATGATGAC 60.020 45.833 29.04 11.34 0.00 3.06
765 791 1.270732 GGCTCAGAGACTATGGCCATG 60.271 57.143 29.04 19.38 39.38 3.66
771 797 8.028354 CAGAATATAACAGGCTCAGAGACTATG 58.972 40.741 5.11 0.00 26.27 2.23
782 808 8.492415 TCCATAGTTACAGAATATAACAGGCT 57.508 34.615 0.00 0.00 35.39 4.58
783 809 8.585881 TCTCCATAGTTACAGAATATAACAGGC 58.414 37.037 0.00 0.00 35.39 4.85
873 899 9.445878 TTCGGTATAGTGTATCCTACTTATCAG 57.554 37.037 0.00 0.00 0.00 2.90
887 914 7.284716 TCTGATATGTTCACTTCGGTATAGTGT 59.715 37.037 0.00 0.00 42.77 3.55
915 942 6.648879 AAGCAGAGGAGAGCTAGTAAATAG 57.351 41.667 0.00 0.00 40.90 1.73
928 955 1.888215 TGCACAGAAAAGCAGAGGAG 58.112 50.000 0.00 0.00 35.51 3.69
1164 1191 3.243002 GGAAATAGTACGGTCCAGTCTCG 60.243 52.174 0.00 0.00 0.00 4.04
1201 1228 7.395190 AACTAAAATGCTGCAGATGACATAA 57.605 32.000 20.43 0.41 0.00 1.90
1229 1256 2.703416 AGATCACATGCTTCGCAAAGA 58.297 42.857 0.00 0.00 43.62 2.52
1230 1257 3.482722 AAGATCACATGCTTCGCAAAG 57.517 42.857 0.00 0.00 43.62 2.77
1236 1263 6.183360 GGAGTAACAGAAAGATCACATGCTTC 60.183 42.308 0.00 0.00 0.00 3.86
1250 1277 1.276622 GGCCAGAGGGAGTAACAGAA 58.723 55.000 0.00 0.00 35.59 3.02
1265 1292 6.072175 GCAAAACGATCTTATATTATGGGCCA 60.072 38.462 9.61 9.61 0.00 5.36
1267 1294 6.908825 TGCAAAACGATCTTATATTATGGGC 58.091 36.000 0.00 0.00 0.00 5.36
1268 1295 7.538678 GCTTGCAAAACGATCTTATATTATGGG 59.461 37.037 0.00 0.00 0.00 4.00
1271 1298 8.840321 ACAGCTTGCAAAACGATCTTATATTAT 58.160 29.630 0.00 0.00 0.00 1.28
1272 1299 8.208718 ACAGCTTGCAAAACGATCTTATATTA 57.791 30.769 0.00 0.00 0.00 0.98
1274 1301 6.683974 ACAGCTTGCAAAACGATCTTATAT 57.316 33.333 0.00 0.00 0.00 0.86
1277 1304 4.829064 AACAGCTTGCAAAACGATCTTA 57.171 36.364 0.00 0.00 0.00 2.10
1278 1305 3.715628 AACAGCTTGCAAAACGATCTT 57.284 38.095 0.00 0.00 0.00 2.40
1279 1306 3.715628 AAACAGCTTGCAAAACGATCT 57.284 38.095 0.00 0.00 0.00 2.75
1294 1321 5.215160 AGATCGTTTTGCAAGCTAAAACAG 58.785 37.500 18.63 12.95 44.28 3.16
1295 1322 5.181690 AGATCGTTTTGCAAGCTAAAACA 57.818 34.783 18.63 9.57 44.28 2.83
1297 1324 6.730175 TGTAAGATCGTTTTGCAAGCTAAAA 58.270 32.000 0.00 1.77 0.00 1.52
1299 1326 5.616866 GCTGTAAGATCGTTTTGCAAGCTAA 60.617 40.000 0.00 0.00 34.07 3.09
1300 1327 4.142902 GCTGTAAGATCGTTTTGCAAGCTA 60.143 41.667 0.00 0.00 34.07 3.32
1303 1330 4.410492 AGCTGTAAGATCGTTTTGCAAG 57.590 40.909 0.00 0.00 34.07 4.01
1305 1332 3.609175 GCAAGCTGTAAGATCGTTTTGCA 60.609 43.478 0.00 0.00 39.41 4.08
1306 1333 2.911102 GCAAGCTGTAAGATCGTTTTGC 59.089 45.455 0.00 0.00 34.07 3.68
1307 1334 4.145876 TGCAAGCTGTAAGATCGTTTTG 57.854 40.909 0.00 0.00 34.07 2.44
1308 1335 4.829064 TTGCAAGCTGTAAGATCGTTTT 57.171 36.364 0.00 0.00 34.07 2.43
1309 1336 4.787598 CTTTGCAAGCTGTAAGATCGTTT 58.212 39.130 0.00 0.00 34.07 3.60
1310 1337 4.410492 CTTTGCAAGCTGTAAGATCGTT 57.590 40.909 0.00 0.00 34.07 3.85
1323 1350 8.929746 TCTCATAATATAAGATCGCTTTGCAAG 58.070 33.333 0.00 0.00 35.56 4.01
1325 1352 7.062255 CGTCTCATAATATAAGATCGCTTTGCA 59.938 37.037 0.00 0.00 35.56 4.08
1326 1353 7.387180 CGTCTCATAATATAAGATCGCTTTGC 58.613 38.462 0.00 0.00 35.56 3.68
1327 1354 7.755373 TCCGTCTCATAATATAAGATCGCTTTG 59.245 37.037 0.00 0.00 35.56 2.77
1329 1356 7.392494 TCCGTCTCATAATATAAGATCGCTT 57.608 36.000 0.00 0.00 38.15 4.68
1331 1358 6.202937 CCTCCGTCTCATAATATAAGATCGC 58.797 44.000 0.00 0.00 0.00 4.58
1332 1359 6.542735 TCCCTCCGTCTCATAATATAAGATCG 59.457 42.308 0.00 0.00 0.00 3.69
1333 1360 7.558444 ACTCCCTCCGTCTCATAATATAAGATC 59.442 40.741 0.00 0.00 0.00 2.75
1338 1365 7.110810 CAGTACTCCCTCCGTCTCATAATATA 58.889 42.308 0.00 0.00 0.00 0.86
1339 1366 5.946972 CAGTACTCCCTCCGTCTCATAATAT 59.053 44.000 0.00 0.00 0.00 1.28
1340 1367 5.163120 ACAGTACTCCCTCCGTCTCATAATA 60.163 44.000 0.00 0.00 0.00 0.98
1341 1368 4.145807 CAGTACTCCCTCCGTCTCATAAT 58.854 47.826 0.00 0.00 0.00 1.28
1342 1369 3.053842 ACAGTACTCCCTCCGTCTCATAA 60.054 47.826 0.00 0.00 0.00 1.90
1345 1372 0.697079 ACAGTACTCCCTCCGTCTCA 59.303 55.000 0.00 0.00 0.00 3.27
1346 1373 1.836802 AACAGTACTCCCTCCGTCTC 58.163 55.000 0.00 0.00 0.00 3.36
1347 1374 2.299297 CAAAACAGTACTCCCTCCGTCT 59.701 50.000 0.00 0.00 0.00 4.18
1348 1375 2.036862 ACAAAACAGTACTCCCTCCGTC 59.963 50.000 0.00 0.00 0.00 4.79
1363 1412 4.688413 TGGCACAGAAAACTTTGACAAAAC 59.312 37.500 1.62 0.00 0.00 2.43
1379 1428 2.806945 TCTATTCCCCTTTGGCACAG 57.193 50.000 0.00 0.00 42.39 3.66
1438 1487 3.366052 AATTTGGAACAGCGGGAGTAT 57.634 42.857 0.00 0.00 42.39 2.12
1439 1488 2.871096 AATTTGGAACAGCGGGAGTA 57.129 45.000 0.00 0.00 42.39 2.59
1440 1489 2.039879 AGTAATTTGGAACAGCGGGAGT 59.960 45.455 0.00 0.00 42.39 3.85
1441 1490 2.678336 GAGTAATTTGGAACAGCGGGAG 59.322 50.000 0.00 0.00 42.39 4.30
1442 1491 2.706890 GAGTAATTTGGAACAGCGGGA 58.293 47.619 0.00 0.00 42.39 5.14
1443 1492 1.396996 CGAGTAATTTGGAACAGCGGG 59.603 52.381 0.00 0.00 42.39 6.13
1444 1493 2.073816 ACGAGTAATTTGGAACAGCGG 58.926 47.619 0.00 0.00 42.39 5.52
1445 1494 2.222508 CGACGAGTAATTTGGAACAGCG 60.223 50.000 0.00 0.00 42.39 5.18
1446 1495 2.735134 ACGACGAGTAATTTGGAACAGC 59.265 45.455 0.00 0.00 42.39 4.40
1447 1496 3.985279 TCACGACGAGTAATTTGGAACAG 59.015 43.478 0.00 0.00 42.39 3.16
1448 1497 3.979948 TCACGACGAGTAATTTGGAACA 58.020 40.909 0.00 0.00 0.00 3.18
1449 1498 5.526010 AATCACGACGAGTAATTTGGAAC 57.474 39.130 0.00 0.00 0.00 3.62
1450 1499 6.548441 AAAATCACGACGAGTAATTTGGAA 57.452 33.333 0.00 0.00 0.00 3.53
1451 1500 6.869913 ACTAAAATCACGACGAGTAATTTGGA 59.130 34.615 0.00 0.00 0.00 3.53
1452 1501 7.057149 ACTAAAATCACGACGAGTAATTTGG 57.943 36.000 0.00 2.53 0.00 3.28
1453 1502 8.218441 TGAACTAAAATCACGACGAGTAATTTG 58.782 33.333 0.00 0.00 0.00 2.32
1454 1503 8.301730 TGAACTAAAATCACGACGAGTAATTT 57.698 30.769 0.00 0.00 0.00 1.82
1455 1504 7.878477 TGAACTAAAATCACGACGAGTAATT 57.122 32.000 0.00 0.00 0.00 1.40
1456 1505 7.878477 TTGAACTAAAATCACGACGAGTAAT 57.122 32.000 0.00 0.00 0.00 1.89
1457 1506 7.697352 TTTGAACTAAAATCACGACGAGTAA 57.303 32.000 0.00 0.00 0.00 2.24
1458 1507 7.878477 ATTTGAACTAAAATCACGACGAGTA 57.122 32.000 0.00 0.00 0.00 2.59
1459 1508 6.780706 ATTTGAACTAAAATCACGACGAGT 57.219 33.333 0.00 0.00 0.00 4.18
1460 1509 7.796660 TCAAATTTGAACTAAAATCACGACGAG 59.203 33.333 18.45 0.00 33.55 4.18
1461 1510 7.631822 TCAAATTTGAACTAAAATCACGACGA 58.368 30.769 18.45 0.00 33.55 4.20
1462 1511 7.830217 TCAAATTTGAACTAAAATCACGACG 57.170 32.000 18.45 0.00 33.55 5.12
1476 1525 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
1477 1526 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
1478 1527 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
1479 1528 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
1480 1529 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
1481 1530 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
1482 1531 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
1483 1532 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
1484 1533 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
1485 1534 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
1486 1535 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
1487 1536 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
1488 1537 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
1489 1538 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
1490 1539 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
1491 1540 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
1492 1541 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
1493 1542 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
1494 1543 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
1495 1544 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
1496 1545 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
1497 1546 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
1498 1547 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
1499 1548 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
1500 1549 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
1501 1550 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
1502 1551 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
1503 1552 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
1504 1553 4.098894 AGTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
1505 1554 2.910977 AGTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
1506 1555 2.547990 AGTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
1507 1556 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
1508 1557 1.897802 GAAGTACTCCCTCCGTTCCAA 59.102 52.381 0.00 0.00 0.00 3.53
1509 1558 1.553706 GAAGTACTCCCTCCGTTCCA 58.446 55.000 0.00 0.00 0.00 3.53
1510 1559 0.822811 GGAAGTACTCCCTCCGTTCC 59.177 60.000 0.00 0.00 38.44 3.62
1511 1560 1.477295 CAGGAAGTACTCCCTCCGTTC 59.523 57.143 0.00 0.00 46.81 3.95
1512 1561 1.076677 TCAGGAAGTACTCCCTCCGTT 59.923 52.381 0.00 0.00 46.81 4.44
1513 1562 0.702902 TCAGGAAGTACTCCCTCCGT 59.297 55.000 0.00 0.00 46.81 4.69
1514 1563 1.848652 TTCAGGAAGTACTCCCTCCG 58.151 55.000 0.00 0.00 46.81 4.63
1515 1564 2.701423 GGATTCAGGAAGTACTCCCTCC 59.299 54.545 0.00 0.01 46.81 4.30
1516 1565 3.648739 AGGATTCAGGAAGTACTCCCTC 58.351 50.000 0.00 0.00 46.81 4.30
1517 1566 3.786213 AGGATTCAGGAAGTACTCCCT 57.214 47.619 0.00 0.00 46.81 4.20
1518 1567 4.409718 GAAGGATTCAGGAAGTACTCCC 57.590 50.000 0.00 0.00 46.62 4.30
1566 1615 6.770785 ACTTTGACTACCAATGAAGCAACTAA 59.229 34.615 0.00 0.00 34.23 2.24
1668 1717 9.346725 GCTTCGAGATGAAAAATTAATTGTTCT 57.653 29.630 24.82 14.36 35.51 3.01
1669 1718 9.128107 TGCTTCGAGATGAAAAATTAATTGTTC 57.872 29.630 20.07 20.07 35.79 3.18
1675 1724 8.967218 CAAAACTGCTTCGAGATGAAAAATTAA 58.033 29.630 0.00 0.00 35.79 1.40
1690 1741 3.368843 GCATTATGCCACAAAACTGCTTC 59.631 43.478 5.80 0.00 37.42 3.86
1699 1750 4.804868 AAGAATGTGCATTATGCCACAA 57.195 36.364 19.92 9.09 44.23 3.33
1712 1763 6.546395 AGCGCTAACAGAAAATAAGAATGTG 58.454 36.000 8.99 0.00 0.00 3.21
1785 1836 3.347216 AGCAGTATGTTACCTTTGGCTG 58.653 45.455 0.00 0.00 39.31 4.85
1822 1881 9.605275 TCTTCTATTCATTATTCAAGTCACCAG 57.395 33.333 0.00 0.00 0.00 4.00
1844 1903 2.278332 AGGCCCAAGAAAGTGTCTTC 57.722 50.000 0.00 0.00 45.25 2.87
1846 1905 2.755952 AAAGGCCCAAGAAAGTGTCT 57.244 45.000 0.00 0.00 38.69 3.41
1847 1906 2.959030 AGAAAAGGCCCAAGAAAGTGTC 59.041 45.455 0.00 0.00 0.00 3.67
1868 1927 3.314913 CACAGTGGTGTACATGCAAAAGA 59.685 43.478 0.00 0.00 40.24 2.52
1899 2347 5.791666 AGACAGATGGTGCATATATGACAG 58.208 41.667 17.10 4.21 0.00 3.51
1987 2437 4.569966 CAGAAGAGGATTTGATTCTCCACG 59.430 45.833 0.00 0.00 33.75 4.94
1996 2446 6.879458 GGCTAAAACTACAGAAGAGGATTTGA 59.121 38.462 0.00 0.00 0.00 2.69
2005 2455 6.486993 AGGAAAACAGGCTAAAACTACAGAAG 59.513 38.462 0.00 0.00 0.00 2.85
2006 2456 6.362248 AGGAAAACAGGCTAAAACTACAGAA 58.638 36.000 0.00 0.00 0.00 3.02
2009 2459 5.889289 ACAAGGAAAACAGGCTAAAACTACA 59.111 36.000 0.00 0.00 0.00 2.74
2031 2481 7.701539 ACAAGAGTGCCATGATAATTTTACA 57.298 32.000 0.00 0.00 0.00 2.41
2057 2507 5.009854 ACTGTTTTGTTGAATCAAGGTGG 57.990 39.130 0.00 0.00 0.00 4.61
2100 2550 4.142622 CGGTCACACATTGTCAAATAGCAT 60.143 41.667 0.00 0.00 0.00 3.79
2133 2583 9.077885 TCTAAATACTGGAATGCAAGTTTCTTT 57.922 29.630 0.00 0.00 0.00 2.52
2193 2643 2.627221 TGCAGCAGTTTCAATTTGGCTA 59.373 40.909 0.00 0.00 0.00 3.93
2304 2755 8.526667 TGTATCTAAACAGAGACAGATAAGCT 57.473 34.615 0.00 0.00 35.44 3.74
2349 2800 5.123936 GGGTTCTGGTATCCAAATACAGTC 58.876 45.833 0.00 0.00 39.69 3.51
2353 2804 5.359860 CCTTTGGGTTCTGGTATCCAAATAC 59.640 44.000 6.80 0.00 44.90 1.89
2517 2968 9.941325 GTCCATCAATCTAGAAGACATAATGAT 57.059 33.333 0.00 0.00 0.00 2.45
2533 3068 3.763097 TCATTTGCACGTCCATCAATC 57.237 42.857 0.00 0.00 0.00 2.67
2542 3077 2.505628 TGCACAAATCATTTGCACGT 57.494 40.000 10.21 0.00 44.39 4.49
2589 3130 4.993028 TCACTGGTGCCTTTTAGGTAAAT 58.007 39.130 0.00 0.00 37.80 1.40
2615 3156 4.881850 ACTTTGTGGACCTAACAGAAACTG 59.118 41.667 0.00 0.00 37.52 3.16
2657 3198 6.435277 CCTATAATCCAGGGGAAATCAACATG 59.565 42.308 0.00 0.00 34.34 3.21
2668 3209 9.901172 GTGTAATAATAACCTATAATCCAGGGG 57.099 37.037 0.00 0.00 37.51 4.79
2710 3252 9.959721 ATAATACTTTTATACATGTGCTAGGGG 57.040 33.333 9.11 0.00 0.00 4.79
2774 3316 5.806502 CACAAAGCTTGAACATGTCTCAAAA 59.193 36.000 17.98 4.58 32.57 2.44
2861 3403 0.686789 GGGGCAAGCCAGTTCAAAAT 59.313 50.000 13.87 0.00 37.98 1.82
2877 3420 2.893682 CTAAAGGGGAAGCGCTGGGG 62.894 65.000 12.58 0.00 0.00 4.96
2885 3428 3.690460 ACAAGTCATGCTAAAGGGGAAG 58.310 45.455 0.00 0.00 0.00 3.46
3233 3776 8.216423 GGACTGAGGATTATGGATATGCAATAT 58.784 37.037 0.00 0.00 43.59 1.28
3234 3777 7.404104 AGGACTGAGGATTATGGATATGCAATA 59.596 37.037 0.00 0.00 0.00 1.90
3235 3778 6.217074 AGGACTGAGGATTATGGATATGCAAT 59.783 38.462 0.00 0.00 0.00 3.56
3236 3779 5.549228 AGGACTGAGGATTATGGATATGCAA 59.451 40.000 0.00 0.00 0.00 4.08
3237 3780 5.096521 AGGACTGAGGATTATGGATATGCA 58.903 41.667 0.00 0.00 0.00 3.96
3243 3786 2.968574 GCTGAGGACTGAGGATTATGGA 59.031 50.000 0.00 0.00 0.00 3.41
3244 3787 2.038295 GGCTGAGGACTGAGGATTATGG 59.962 54.545 0.00 0.00 0.00 2.74
3321 3864 6.952358 AGGTCAACCTACTAGACAATTGACTA 59.048 38.462 13.59 14.61 46.48 2.59
3397 3940 3.960755 GGAAAATGGATTTAGGGGGACAG 59.039 47.826 0.00 0.00 0.00 3.51
3398 3941 3.338214 TGGAAAATGGATTTAGGGGGACA 59.662 43.478 0.00 0.00 0.00 4.02
3400 3943 3.600617 AGTGGAAAATGGATTTAGGGGGA 59.399 43.478 0.00 0.00 0.00 4.81
3401 3944 3.960755 GAGTGGAAAATGGATTTAGGGGG 59.039 47.826 0.00 0.00 0.00 5.40
3402 3945 3.960755 GGAGTGGAAAATGGATTTAGGGG 59.039 47.826 0.00 0.00 0.00 4.79
3403 3946 4.609301 TGGAGTGGAAAATGGATTTAGGG 58.391 43.478 0.00 0.00 0.00 3.53
3404 3947 5.264395 ACTGGAGTGGAAAATGGATTTAGG 58.736 41.667 0.00 0.00 0.00 2.69
3405 3948 6.840780 AACTGGAGTGGAAAATGGATTTAG 57.159 37.500 0.00 0.00 0.00 1.85
3407 3950 8.917088 CATATAACTGGAGTGGAAAATGGATTT 58.083 33.333 0.00 0.00 0.00 2.17
3408 3951 8.061304 ACATATAACTGGAGTGGAAAATGGATT 58.939 33.333 0.00 0.00 0.00 3.01
3409 3952 7.586349 ACATATAACTGGAGTGGAAAATGGAT 58.414 34.615 0.00 0.00 0.00 3.41
3456 4000 9.490663 GAATAAATCATTTGTTTCGGTACTCAG 57.509 33.333 0.00 0.00 0.00 3.35
3464 4008 8.382130 CCCAACATGAATAAATCATTTGTTTCG 58.618 33.333 0.00 0.00 46.85 3.46
3477 4021 4.299586 TCTCTGTGCCCAACATGAATAA 57.700 40.909 0.00 0.00 38.39 1.40
3478 4022 3.998913 TCTCTGTGCCCAACATGAATA 57.001 42.857 0.00 0.00 38.39 1.75
3483 4027 1.632409 ACTCATCTCTGTGCCCAACAT 59.368 47.619 0.00 0.00 38.39 2.71
3485 4029 3.201290 CATACTCATCTCTGTGCCCAAC 58.799 50.000 0.00 0.00 0.00 3.77
3490 4034 2.481854 CAGCCATACTCATCTCTGTGC 58.518 52.381 0.00 0.00 0.00 4.57
3495 4039 4.148838 AGACTACCAGCCATACTCATCTC 58.851 47.826 0.00 0.00 0.00 2.75
3500 4044 3.702045 ACAGAAGACTACCAGCCATACTC 59.298 47.826 0.00 0.00 0.00 2.59
3507 4051 5.500645 AAAACAAACAGAAGACTACCAGC 57.499 39.130 0.00 0.00 0.00 4.85
3551 4099 8.410141 CGAAAGTAGATCTACCTCAAGAATCTT 58.590 37.037 25.93 9.49 36.75 2.40
3577 4125 3.305335 CCCTGTGATGCTTACAAACCAAC 60.305 47.826 0.00 0.00 0.00 3.77
3648 4196 7.554959 ACCAAAGAAAGTAGATCTACCTCAA 57.445 36.000 25.93 0.00 36.75 3.02
3733 4285 1.601903 TGACAAGGCAAACGTAGCAAG 59.398 47.619 13.92 6.20 0.00 4.01
3734 4286 1.601903 CTGACAAGGCAAACGTAGCAA 59.398 47.619 13.92 0.00 0.00 3.91
3735 4287 1.225855 CTGACAAGGCAAACGTAGCA 58.774 50.000 13.92 0.00 0.00 3.49
3744 4296 2.308570 ACCATAATCCACTGACAAGGCA 59.691 45.455 0.00 0.00 0.00 4.75
3819 4372 7.669722 AGAGAGCCACAAAAATAGGAAATGTTA 59.330 33.333 0.00 0.00 0.00 2.41
3823 4376 7.544804 AAAGAGAGCCACAAAAATAGGAAAT 57.455 32.000 0.00 0.00 0.00 2.17
3834 4387 3.817084 CTGATGTGAAAAGAGAGCCACAA 59.183 43.478 0.00 0.00 41.97 3.33
3835 4388 3.071457 TCTGATGTGAAAAGAGAGCCACA 59.929 43.478 0.00 0.00 42.71 4.17
3893 4446 0.319728 ACTGTGATGCGCTTCTCTGT 59.680 50.000 22.99 22.99 0.00 3.41
3894 4447 1.128136 CAACTGTGATGCGCTTCTCTG 59.872 52.381 22.11 22.07 0.00 3.35
3898 4451 0.179205 GCTCAACTGTGATGCGCTTC 60.179 55.000 15.88 15.88 31.85 3.86
3903 4456 0.168348 CAGCTGCTCAACTGTGATGC 59.832 55.000 0.00 0.00 31.85 3.91
3907 4460 0.040336 CTTGCAGCTGCTCAACTGTG 60.040 55.000 36.61 14.88 42.66 3.66
3928 4481 8.076910 ACAAGGGAAATGACAATAATTATGCA 57.923 30.769 0.00 0.00 0.00 3.96
3934 4488 9.174166 GTACTGTACAAGGGAAATGACAATAAT 57.826 33.333 12.89 0.00 0.00 1.28
3941 4495 7.074653 AGAAAGTACTGTACAAGGGAAATGA 57.925 36.000 19.27 0.00 0.00 2.57
3957 4512 9.569167 GGCCAATCAAACTAAAATAGAAAGTAC 57.431 33.333 0.00 0.00 0.00 2.73
3958 4513 9.303116 TGGCCAATCAAACTAAAATAGAAAGTA 57.697 29.630 0.61 0.00 0.00 2.24
3959 4514 8.088365 GTGGCCAATCAAACTAAAATAGAAAGT 58.912 33.333 7.24 0.00 0.00 2.66
3965 4520 6.495181 TGGAAGTGGCCAATCAAACTAAAATA 59.505 34.615 7.24 0.00 34.31 1.40
3983 4538 3.928375 GCCAACATAATTTGCTGGAAGTG 59.072 43.478 11.75 0.00 43.17 3.16
3998 4553 3.262420 GAGTGACGATTACAGCCAACAT 58.738 45.455 0.00 0.00 0.00 2.71
4004 4559 3.064207 TGTTTGGAGTGACGATTACAGC 58.936 45.455 0.00 0.00 0.00 4.40
4087 4643 4.855531 ACGCCTTAAAAACAAAGCACTAG 58.144 39.130 0.00 0.00 0.00 2.57
4110 4666 1.142748 CTCAAGCGTCCTAGGCAGG 59.857 63.158 2.96 0.25 44.17 4.85
4111 4667 1.520342 GCTCAAGCGTCCTAGGCAG 60.520 63.158 2.96 0.97 0.00 4.85
4112 4668 2.579201 GCTCAAGCGTCCTAGGCA 59.421 61.111 2.96 0.00 0.00 4.75
4129 4685 1.643832 GCTGAAAGGCGCCTTATCG 59.356 57.895 40.29 29.02 34.84 2.92
4138 4694 0.596082 TTTGTAAGGCGCTGAAAGGC 59.404 50.000 7.64 0.00 0.00 4.35
4139 4695 4.601019 CATATTTGTAAGGCGCTGAAAGG 58.399 43.478 7.64 0.00 0.00 3.11
4140 4696 4.037690 GCATATTTGTAAGGCGCTGAAAG 58.962 43.478 7.64 0.00 0.00 2.62
4141 4697 3.181491 GGCATATTTGTAAGGCGCTGAAA 60.181 43.478 7.64 0.00 0.00 2.69
4142 4698 2.357637 GGCATATTTGTAAGGCGCTGAA 59.642 45.455 7.64 0.00 0.00 3.02
4143 4699 1.946768 GGCATATTTGTAAGGCGCTGA 59.053 47.619 7.64 0.00 0.00 4.26
4144 4700 1.001378 GGGCATATTTGTAAGGCGCTG 60.001 52.381 7.64 0.00 34.95 5.18
4145 4701 1.318576 GGGCATATTTGTAAGGCGCT 58.681 50.000 7.64 0.00 34.95 5.92
4146 4702 0.040425 CGGGCATATTTGTAAGGCGC 60.040 55.000 0.00 0.00 0.00 6.53
4147 4703 1.263217 GACGGGCATATTTGTAAGGCG 59.737 52.381 0.00 0.00 0.00 5.52
4148 4704 2.572290 AGACGGGCATATTTGTAAGGC 58.428 47.619 0.00 0.00 0.00 4.35
4149 4705 4.755123 CCTAAGACGGGCATATTTGTAAGG 59.245 45.833 0.00 0.00 0.00 2.69
4150 4706 5.924475 CCTAAGACGGGCATATTTGTAAG 57.076 43.478 0.00 0.00 0.00 2.34
4161 4717 1.591863 CTAAGCGCCTAAGACGGGC 60.592 63.158 2.29 0.00 45.57 6.13
4162 4718 1.067582 CCTAAGCGCCTAAGACGGG 59.932 63.158 2.29 0.00 0.00 5.28
4163 4719 1.591863 GCCTAAGCGCCTAAGACGG 60.592 63.158 2.29 0.00 0.00 4.79
4164 4720 4.014065 GCCTAAGCGCCTAAGACG 57.986 61.111 2.29 0.00 0.00 4.18
4200 4756 4.077184 TAAGGCGAGCACCACCCG 62.077 66.667 0.00 0.00 0.00 5.28
4201 4757 2.125106 CTAAGGCGAGCACCACCC 60.125 66.667 0.00 0.00 0.00 4.61
4202 4758 2.125106 CCTAAGGCGAGCACCACC 60.125 66.667 0.00 0.00 0.00 4.61
4203 4759 1.003718 AACCTAAGGCGAGCACCAC 60.004 57.895 0.00 0.00 0.00 4.16
4204 4760 1.003839 CAACCTAAGGCGAGCACCA 60.004 57.895 0.00 0.00 0.00 4.17
4205 4761 2.399356 GCAACCTAAGGCGAGCACC 61.399 63.158 0.00 0.00 0.00 5.01
4206 4762 2.399356 GGCAACCTAAGGCGAGCAC 61.399 63.158 0.00 0.00 0.00 4.40
4207 4763 2.046314 GGCAACCTAAGGCGAGCA 60.046 61.111 0.00 0.00 0.00 4.26
4208 4764 0.107848 TAAGGCAACCTAAGGCGAGC 60.108 55.000 0.00 0.00 36.55 5.03
4209 4765 1.653151 GTAAGGCAACCTAAGGCGAG 58.347 55.000 0.00 0.00 36.55 5.03
4210 4766 0.251073 GGTAAGGCAACCTAAGGCGA 59.749 55.000 2.05 0.00 36.53 5.54
4211 4767 1.087771 CGGTAAGGCAACCTAAGGCG 61.088 60.000 7.36 0.00 37.39 5.52
4212 4768 1.374343 GCGGTAAGGCAACCTAAGGC 61.374 60.000 7.36 0.40 37.39 4.35
4213 4769 0.746923 GGCGGTAAGGCAACCTAAGG 60.747 60.000 7.36 0.00 45.92 2.69
4214 4770 2.776659 GGCGGTAAGGCAACCTAAG 58.223 57.895 7.36 0.00 45.92 2.18
4223 4779 4.021807 ACCATTGTTTTTAAGGCGGTAAGG 60.022 41.667 0.00 0.00 0.00 2.69
4224 4780 5.128992 ACCATTGTTTTTAAGGCGGTAAG 57.871 39.130 0.00 0.00 0.00 2.34
4225 4781 6.645790 TTACCATTGTTTTTAAGGCGGTAA 57.354 33.333 0.00 0.00 35.85 2.85
4226 4782 6.837471 ATTACCATTGTTTTTAAGGCGGTA 57.163 33.333 0.00 0.00 0.00 4.02
4227 4783 5.731957 ATTACCATTGTTTTTAAGGCGGT 57.268 34.783 0.00 0.00 0.00 5.68
4228 4784 7.712797 AGATATTACCATTGTTTTTAAGGCGG 58.287 34.615 0.00 0.00 0.00 6.13
4229 4785 7.860872 GGAGATATTACCATTGTTTTTAAGGCG 59.139 37.037 0.00 0.00 0.00 5.52
4230 4786 7.860872 CGGAGATATTACCATTGTTTTTAAGGC 59.139 37.037 0.00 0.00 0.00 4.35
4231 4787 7.860872 GCGGAGATATTACCATTGTTTTTAAGG 59.139 37.037 0.00 0.00 0.00 2.69
4232 4788 7.586300 CGCGGAGATATTACCATTGTTTTTAAG 59.414 37.037 0.00 0.00 0.00 1.85
4233 4789 7.411274 CGCGGAGATATTACCATTGTTTTTAA 58.589 34.615 0.00 0.00 0.00 1.52
4234 4790 6.512091 GCGCGGAGATATTACCATTGTTTTTA 60.512 38.462 8.83 0.00 0.00 1.52
4235 4791 5.732247 GCGCGGAGATATTACCATTGTTTTT 60.732 40.000 8.83 0.00 0.00 1.94
4236 4792 4.261031 GCGCGGAGATATTACCATTGTTTT 60.261 41.667 8.83 0.00 0.00 2.43
4237 4793 3.250040 GCGCGGAGATATTACCATTGTTT 59.750 43.478 8.83 0.00 0.00 2.83
4238 4794 2.806244 GCGCGGAGATATTACCATTGTT 59.194 45.455 8.83 0.00 0.00 2.83
4239 4795 2.413837 GCGCGGAGATATTACCATTGT 58.586 47.619 8.83 0.00 0.00 2.71
4240 4796 1.732259 GGCGCGGAGATATTACCATTG 59.268 52.381 8.83 0.00 0.00 2.82
4241 4797 1.623811 AGGCGCGGAGATATTACCATT 59.376 47.619 8.83 0.00 0.00 3.16
4242 4798 1.267121 AGGCGCGGAGATATTACCAT 58.733 50.000 8.83 0.00 0.00 3.55
4243 4799 1.000506 GAAGGCGCGGAGATATTACCA 59.999 52.381 8.83 0.00 0.00 3.25
4244 4800 1.272769 AGAAGGCGCGGAGATATTACC 59.727 52.381 8.83 0.00 0.00 2.85
4252 4808 3.181967 CGAACAGAAGGCGCGGAG 61.182 66.667 8.83 0.00 0.00 4.63
4257 4813 1.221466 TGCTTCACGAACAGAAGGCG 61.221 55.000 0.00 0.00 42.08 5.52
4259 4815 1.261619 GTGTGCTTCACGAACAGAAGG 59.738 52.381 0.00 0.00 42.08 3.46
4308 4867 6.664816 AGATTCCCATTCTGCTTTGTTAATGA 59.335 34.615 0.00 0.00 32.29 2.57
4487 5046 2.266554 GAAGGATGTCGAGCTTCACTG 58.733 52.381 0.00 0.00 0.00 3.66
4604 5163 1.981256 TTGCTCCTCTTGTTTGGGAC 58.019 50.000 0.00 0.00 0.00 4.46
4728 5291 6.682423 TTACTATGTCGGTCGAATCTACAA 57.318 37.500 0.00 0.00 0.00 2.41
4839 5403 3.866066 GCCTGTTCTTCAGTAGCATGTCA 60.866 47.826 0.00 0.00 42.19 3.58
4840 5404 2.675348 GCCTGTTCTTCAGTAGCATGTC 59.325 50.000 0.00 0.00 42.19 3.06
4891 5455 5.004345 GTGTCAAAACATTTCACCGAACAAG 59.996 40.000 0.00 0.00 37.81 3.16
4941 5511 9.793252 AATTTCAACTAGAATCATCCGAAATTG 57.207 29.630 0.00 0.00 39.24 2.32
4944 5514 7.250569 GCAATTTCAACTAGAATCATCCGAAA 58.749 34.615 0.00 0.00 35.83 3.46
4948 5518 6.705863 AGGCAATTTCAACTAGAATCATCC 57.294 37.500 0.00 0.00 35.83 3.51
4949 5519 8.031277 ACAAAGGCAATTTCAACTAGAATCATC 58.969 33.333 0.00 0.00 35.83 2.92
4951 5521 7.288810 ACAAAGGCAATTTCAACTAGAATCA 57.711 32.000 0.00 0.00 35.83 2.57
4971 5541 4.898861 AGGCAGGATTTTACAGGAAACAAA 59.101 37.500 0.00 0.00 0.00 2.83
5035 5606 4.624364 TGACCCGCACAGCCACTG 62.624 66.667 0.00 0.00 37.52 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.