Multiple sequence alignment - TraesCS3A01G157700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G157700 chr3A 100.000 3224 0 0 1 3224 155056492 155059715 0.000000e+00 5954
1 TraesCS3A01G157700 chr3A 92.053 151 10 2 3030 3179 593355867 593355718 9.060000e-51 211
2 TraesCS3A01G157700 chr3D 93.799 2935 98 33 147 3029 137008736 137005834 0.000000e+00 4335
3 TraesCS3A01G157700 chr3D 94.040 151 8 1 3030 3179 26165847 26165697 9.000000e-56 228
4 TraesCS3A01G157700 chr3D 82.075 212 32 4 1342 1550 137007596 137007388 3.310000e-40 176
5 TraesCS3A01G157700 chr3D 89.381 113 12 0 1434 1546 137007579 137007467 3.350000e-30 143
6 TraesCS3A01G157700 chr3D 95.652 46 2 0 3179 3224 137005832 137005787 1.240000e-09 75
7 TraesCS3A01G157700 chr3B 92.035 2988 113 55 110 3029 200478152 200481082 0.000000e+00 4084
8 TraesCS3A01G157700 chr3B 84.874 119 12 2 1434 1546 200479355 200479473 7.310000e-22 115
9 TraesCS3A01G157700 chr2D 93.548 155 9 1 3030 3183 215831815 215831969 2.500000e-56 230
10 TraesCS3A01G157700 chr1D 94.040 151 8 1 3030 3179 418199432 418199582 9.000000e-56 228
11 TraesCS3A01G157700 chr1D 96.875 96 2 1 1 96 307205354 307205448 3.330000e-35 159
12 TraesCS3A01G157700 chr1D 94.937 79 3 1 117 194 462121262 462121184 4.370000e-24 122
13 TraesCS3A01G157700 chr7D 92.903 155 10 1 3029 3182 617790745 617790591 1.160000e-54 224
14 TraesCS3A01G157700 chr5B 93.377 151 9 1 3030 3179 291786854 291787004 4.190000e-54 222
15 TraesCS3A01G157700 chr5B 89.831 118 8 3 1 114 517204542 517204425 7.210000e-32 148
16 TraesCS3A01G157700 chr5B 94.318 88 5 0 109 196 544329730 544329643 5.610000e-28 135
17 TraesCS3A01G157700 chr5B 92.941 85 5 1 111 195 658145782 658145699 4.370000e-24 122
18 TraesCS3A01G157700 chr5D 92.053 151 11 1 3030 3179 257502136 257502286 9.060000e-51 211
19 TraesCS3A01G157700 chr5D 95.098 102 5 0 1 102 420915112 420915011 9.260000e-36 161
20 TraesCS3A01G157700 chr5D 93.023 86 6 0 110 195 446400808 446400723 3.380000e-25 126
21 TraesCS3A01G157700 chr5D 93.902 82 3 2 117 196 521839769 521839688 4.370000e-24 122
22 TraesCS3A01G157700 chr5A 90.728 151 13 1 3030 3179 643241980 643242130 1.960000e-47 200
23 TraesCS3A01G157700 chr5A 92.045 88 5 1 110 197 564075125 564075040 4.370000e-24 122
24 TraesCS3A01G157700 chr4A 90.728 151 13 1 3030 3179 105240619 105240769 1.960000e-47 200
25 TraesCS3A01G157700 chr4A 96.875 96 3 0 1 96 137534731 137534826 9.260000e-36 161
26 TraesCS3A01G157700 chr4A 94.175 103 6 0 1 103 140976872 140976974 1.200000e-34 158
27 TraesCS3A01G157700 chr4A 94.175 103 6 0 1 103 233991101 233991203 1.200000e-34 158
28 TraesCS3A01G157700 chr6A 94.175 103 6 0 1 103 68996437 68996335 1.200000e-34 158
29 TraesCS3A01G157700 chr7A 87.692 130 12 4 1 127 289158081 289158209 7.210000e-32 148
30 TraesCS3A01G157700 chr7B 88.430 121 12 2 1 121 368160544 368160426 9.320000e-31 145
31 TraesCS3A01G157700 chr7B 90.426 94 5 4 102 192 678649851 678649759 1.570000e-23 121
32 TraesCS3A01G157700 chr7B 91.860 86 5 2 117 201 678291248 678291164 5.650000e-23 119
33 TraesCS3A01G157700 chr1A 91.011 89 6 1 110 198 553707481 553707395 5.650000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G157700 chr3A 155056492 155059715 3223 False 5954.00 5954 100.00000 1 3224 1 chr3A.!!$F1 3223
1 TraesCS3A01G157700 chr3D 137005787 137008736 2949 True 1182.25 4335 90.22675 147 3224 4 chr3D.!!$R2 3077
2 TraesCS3A01G157700 chr3B 200478152 200481082 2930 False 2099.50 4084 88.45450 110 3029 2 chr3B.!!$F1 2919

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
597 642 0.680061 GTCGTCCCTTCAGTCTTGGT 59.320 55.000 0.00 0.00 0.0 3.67 F
719 768 1.081906 CACATGCGTGAACACTGGC 60.082 57.895 14.17 1.34 46.8 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2081 2168 1.114627 CGAGTCCACCTCCATCATGA 58.885 55.000 0.0 0.0 36.82 3.07 R
2710 2806 1.618837 TCTACAGCTTATCCCGCATCC 59.381 52.381 0.0 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 8.934023 TTGGTTAAAGTTGGATAAGATTGACT 57.066 30.769 0.00 0.00 0.00 3.41
57 58 8.934023 TGGTTAAAGTTGGATAAGATTGACTT 57.066 30.769 0.00 0.00 42.04 3.01
58 59 9.010029 TGGTTAAAGTTGGATAAGATTGACTTC 57.990 33.333 0.00 0.00 39.72 3.01
59 60 9.010029 GGTTAAAGTTGGATAAGATTGACTTCA 57.990 33.333 0.00 0.00 39.72 3.02
62 63 7.913674 AAGTTGGATAAGATTGACTTCAGAC 57.086 36.000 0.00 0.00 39.72 3.51
63 64 7.009179 AGTTGGATAAGATTGACTTCAGACA 57.991 36.000 0.00 0.00 39.72 3.41
64 65 7.453393 AGTTGGATAAGATTGACTTCAGACAA 58.547 34.615 0.00 0.00 39.72 3.18
65 66 7.939039 AGTTGGATAAGATTGACTTCAGACAAA 59.061 33.333 0.00 0.00 39.72 2.83
66 67 7.672983 TGGATAAGATTGACTTCAGACAAAC 57.327 36.000 0.00 0.00 39.72 2.93
67 68 6.655003 TGGATAAGATTGACTTCAGACAAACC 59.345 38.462 0.00 0.00 39.72 3.27
68 69 6.881602 GGATAAGATTGACTTCAGACAAACCT 59.118 38.462 0.00 0.00 39.72 3.50
69 70 8.041323 GGATAAGATTGACTTCAGACAAACCTA 58.959 37.037 0.00 0.00 39.72 3.08
70 71 9.436957 GATAAGATTGACTTCAGACAAACCTAA 57.563 33.333 0.00 0.00 39.72 2.69
71 72 9.965902 ATAAGATTGACTTCAGACAAACCTAAT 57.034 29.630 0.00 0.00 39.72 1.73
73 74 9.965902 AAGATTGACTTCAGACAAACCTAATAT 57.034 29.630 0.00 0.00 33.89 1.28
74 75 9.388506 AGATTGACTTCAGACAAACCTAATATG 57.611 33.333 0.00 0.00 33.89 1.78
75 76 6.985188 TGACTTCAGACAAACCTAATATGC 57.015 37.500 0.00 0.00 0.00 3.14
76 77 6.472016 TGACTTCAGACAAACCTAATATGCA 58.528 36.000 0.00 0.00 0.00 3.96
77 78 6.595326 TGACTTCAGACAAACCTAATATGCAG 59.405 38.462 0.00 0.00 0.00 4.41
78 79 6.711277 ACTTCAGACAAACCTAATATGCAGA 58.289 36.000 0.00 0.00 0.00 4.26
79 80 6.820656 ACTTCAGACAAACCTAATATGCAGAG 59.179 38.462 0.00 0.00 0.00 3.35
80 81 6.299805 TCAGACAAACCTAATATGCAGAGT 57.700 37.500 0.00 0.00 0.00 3.24
81 82 7.418337 TCAGACAAACCTAATATGCAGAGTA 57.582 36.000 0.00 0.00 0.00 2.59
82 83 7.847096 TCAGACAAACCTAATATGCAGAGTAA 58.153 34.615 0.00 0.00 0.00 2.24
83 84 8.318412 TCAGACAAACCTAATATGCAGAGTAAA 58.682 33.333 0.00 0.00 0.00 2.01
84 85 8.946085 CAGACAAACCTAATATGCAGAGTAAAA 58.054 33.333 0.00 0.00 0.00 1.52
85 86 9.515226 AGACAAACCTAATATGCAGAGTAAAAA 57.485 29.630 0.00 0.00 0.00 1.94
86 87 9.774742 GACAAACCTAATATGCAGAGTAAAAAG 57.225 33.333 0.00 0.00 0.00 2.27
87 88 8.739972 ACAAACCTAATATGCAGAGTAAAAAGG 58.260 33.333 0.00 0.00 0.00 3.11
88 89 8.956426 CAAACCTAATATGCAGAGTAAAAAGGA 58.044 33.333 2.56 0.00 0.00 3.36
89 90 8.507524 AACCTAATATGCAGAGTAAAAAGGAC 57.492 34.615 2.56 0.00 0.00 3.85
90 91 7.054751 ACCTAATATGCAGAGTAAAAAGGACC 58.945 38.462 2.56 0.00 0.00 4.46
91 92 6.202954 CCTAATATGCAGAGTAAAAAGGACCG 59.797 42.308 0.00 0.00 0.00 4.79
92 93 2.178912 TGCAGAGTAAAAAGGACCGG 57.821 50.000 0.00 0.00 0.00 5.28
93 94 1.695242 TGCAGAGTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
94 95 2.289444 TGCAGAGTAAAAAGGACCGGAG 60.289 50.000 9.46 0.00 0.00 4.63
196 197 3.955771 GGCGACGCAATCCTTTTTATA 57.044 42.857 23.09 0.00 0.00 0.98
197 198 4.281525 GGCGACGCAATCCTTTTTATAA 57.718 40.909 23.09 0.00 0.00 0.98
198 199 4.033019 GGCGACGCAATCCTTTTTATAAC 58.967 43.478 23.09 0.00 0.00 1.89
203 217 6.579292 CGACGCAATCCTTTTTATAACAACAA 59.421 34.615 0.00 0.00 0.00 2.83
263 288 4.803426 CACCCGTCCTGCTCGCTC 62.803 72.222 0.00 0.00 0.00 5.03
353 378 3.496131 CGCGGGCACGTTGCTTAT 61.496 61.111 11.45 0.00 44.28 1.73
354 379 2.168503 CGCGGGCACGTTGCTTATA 61.169 57.895 11.45 0.00 44.28 0.98
451 482 3.804873 GCCGGAGAGCAACTAGAAAATAG 59.195 47.826 5.05 0.00 0.00 1.73
589 634 3.998672 GGCGTGGTCGTCCCTTCA 61.999 66.667 0.00 0.00 39.49 3.02
597 642 0.680061 GTCGTCCCTTCAGTCTTGGT 59.320 55.000 0.00 0.00 0.00 3.67
611 656 2.788191 CTTGGTGCCCAGACGGAGAC 62.788 65.000 0.00 0.00 33.81 3.36
645 690 3.969250 GACGGCCAAGATTCGCCCA 62.969 63.158 2.24 0.00 42.53 5.36
659 704 2.987125 CCCATCGACTTTCGGGGT 59.013 61.111 0.00 0.00 40.88 4.95
719 768 1.081906 CACATGCGTGAACACTGGC 60.082 57.895 14.17 1.34 46.80 4.85
757 806 2.117051 AGCAGCTGGATCTCATCTCAA 58.883 47.619 17.12 0.00 0.00 3.02
758 807 2.706723 AGCAGCTGGATCTCATCTCAAT 59.293 45.455 17.12 0.00 0.00 2.57
759 808 3.902467 AGCAGCTGGATCTCATCTCAATA 59.098 43.478 17.12 0.00 0.00 1.90
760 809 4.532916 AGCAGCTGGATCTCATCTCAATAT 59.467 41.667 17.12 0.00 0.00 1.28
761 810 4.871557 GCAGCTGGATCTCATCTCAATATC 59.128 45.833 17.12 0.00 0.00 1.63
762 811 5.337733 GCAGCTGGATCTCATCTCAATATCT 60.338 44.000 17.12 0.00 0.00 1.98
763 812 6.334989 CAGCTGGATCTCATCTCAATATCTC 58.665 44.000 5.57 0.00 0.00 2.75
764 813 6.017830 AGCTGGATCTCATCTCAATATCTCA 58.982 40.000 0.00 0.00 0.00 3.27
864 945 3.181967 CCGTCTTTCCGCTCGCTG 61.182 66.667 0.00 0.00 0.00 5.18
976 1057 2.088763 CACGCGCACACTCCACTAG 61.089 63.158 5.73 0.00 0.00 2.57
977 1058 3.181967 CGCGCACACTCCACTAGC 61.182 66.667 8.75 0.00 0.00 3.42
980 1061 4.485554 GCACACTCCACTAGCGAG 57.514 61.111 6.00 6.00 0.00 5.03
981 1062 1.807573 GCACACTCCACTAGCGAGC 60.808 63.158 7.23 0.00 0.00 5.03
982 1063 1.515088 CACACTCCACTAGCGAGCG 60.515 63.158 7.23 1.55 0.00 5.03
983 1064 1.674651 ACACTCCACTAGCGAGCGA 60.675 57.895 7.23 0.00 0.00 4.93
2238 2325 4.624364 TGACCCGCACAGCCACTG 62.624 66.667 0.00 0.00 37.52 3.66
2302 2390 4.898861 AGGCAGGATTTTACAGGAAACAAA 59.101 37.500 0.00 0.00 0.00 2.83
2322 2410 7.288810 ACAAAGGCAATTTCAACTAGAATCA 57.711 32.000 0.00 0.00 35.83 2.57
2324 2412 8.031277 ACAAAGGCAATTTCAACTAGAATCATC 58.969 33.333 0.00 0.00 35.83 2.92
2329 2417 7.250569 GCAATTTCAACTAGAATCATCCGAAA 58.749 34.615 0.00 0.00 35.83 3.46
2332 2420 9.793252 AATTTCAACTAGAATCATCCGAAATTG 57.207 29.630 0.00 0.00 39.24 2.32
2382 2476 5.004345 GTGTCAAAACATTTCACCGAACAAG 59.996 40.000 0.00 0.00 37.81 3.16
2433 2527 2.675348 GCCTGTTCTTCAGTAGCATGTC 59.325 50.000 0.00 0.00 42.19 3.06
2434 2528 3.866066 GCCTGTTCTTCAGTAGCATGTCA 60.866 47.826 0.00 0.00 42.19 3.58
2545 2640 6.682423 TTACTATGTCGGTCGAATCTACAA 57.318 37.500 0.00 0.00 0.00 2.41
2669 2764 1.981256 TTGCTCCTCTTGTTTGGGAC 58.019 50.000 0.00 0.00 0.00 4.46
2786 2882 2.266554 GAAGGATGTCGAGCTTCACTG 58.733 52.381 0.00 0.00 0.00 3.66
2965 3061 6.664816 AGATTCCCATTCTGCTTTGTTAATGA 59.335 34.615 0.00 0.00 32.29 2.57
3014 3113 1.261619 GTGTGCTTCACGAACAGAAGG 59.738 52.381 0.00 0.00 42.08 3.46
3016 3115 1.221466 TGCTTCACGAACAGAAGGCG 61.221 55.000 0.00 0.00 42.08 5.52
3021 3120 3.181967 CGAACAGAAGGCGCGGAG 61.182 66.667 8.83 0.00 0.00 4.63
3029 3128 1.272769 AGAAGGCGCGGAGATATTACC 59.727 52.381 8.83 0.00 0.00 2.85
3030 3129 1.000506 GAAGGCGCGGAGATATTACCA 59.999 52.381 8.83 0.00 0.00 3.25
3031 3130 1.267121 AGGCGCGGAGATATTACCAT 58.733 50.000 8.83 0.00 0.00 3.55
3032 3131 1.623811 AGGCGCGGAGATATTACCATT 59.376 47.619 8.83 0.00 0.00 3.16
3033 3132 1.732259 GGCGCGGAGATATTACCATTG 59.268 52.381 8.83 0.00 0.00 2.82
3034 3133 2.413837 GCGCGGAGATATTACCATTGT 58.586 47.619 8.83 0.00 0.00 2.71
3035 3134 2.806244 GCGCGGAGATATTACCATTGTT 59.194 45.455 8.83 0.00 0.00 2.83
3036 3135 3.250040 GCGCGGAGATATTACCATTGTTT 59.750 43.478 8.83 0.00 0.00 2.83
3037 3136 4.261031 GCGCGGAGATATTACCATTGTTTT 60.261 41.667 8.83 0.00 0.00 2.43
3038 3137 5.732247 GCGCGGAGATATTACCATTGTTTTT 60.732 40.000 8.83 0.00 0.00 1.94
3039 3138 6.512091 GCGCGGAGATATTACCATTGTTTTTA 60.512 38.462 8.83 0.00 0.00 1.52
3040 3139 7.411274 CGCGGAGATATTACCATTGTTTTTAA 58.589 34.615 0.00 0.00 0.00 1.52
3041 3140 7.586300 CGCGGAGATATTACCATTGTTTTTAAG 59.414 37.037 0.00 0.00 0.00 1.85
3042 3141 7.860872 GCGGAGATATTACCATTGTTTTTAAGG 59.139 37.037 0.00 0.00 0.00 2.69
3043 3142 7.860872 CGGAGATATTACCATTGTTTTTAAGGC 59.139 37.037 0.00 0.00 0.00 4.35
3044 3143 7.860872 GGAGATATTACCATTGTTTTTAAGGCG 59.139 37.037 0.00 0.00 0.00 5.52
3045 3144 7.712797 AGATATTACCATTGTTTTTAAGGCGG 58.287 34.615 0.00 0.00 0.00 6.13
3046 3145 5.731957 ATTACCATTGTTTTTAAGGCGGT 57.268 34.783 0.00 0.00 0.00 5.68
3047 3146 6.837471 ATTACCATTGTTTTTAAGGCGGTA 57.163 33.333 0.00 0.00 0.00 4.02
3048 3147 6.645790 TTACCATTGTTTTTAAGGCGGTAA 57.354 33.333 0.00 0.00 35.85 2.85
3049 3148 5.128992 ACCATTGTTTTTAAGGCGGTAAG 57.871 39.130 0.00 0.00 0.00 2.34
3050 3149 4.021807 ACCATTGTTTTTAAGGCGGTAAGG 60.022 41.667 0.00 0.00 0.00 2.69
3059 3158 2.776659 GGCGGTAAGGCAACCTAAG 58.223 57.895 7.36 0.00 45.92 2.18
3060 3159 0.746923 GGCGGTAAGGCAACCTAAGG 60.747 60.000 7.36 0.00 45.92 2.69
3061 3160 1.374343 GCGGTAAGGCAACCTAAGGC 61.374 60.000 7.36 0.40 37.39 4.35
3062 3161 1.087771 CGGTAAGGCAACCTAAGGCG 61.088 60.000 7.36 0.00 37.39 5.52
3063 3162 0.251073 GGTAAGGCAACCTAAGGCGA 59.749 55.000 2.05 0.00 36.53 5.54
3064 3163 1.653151 GTAAGGCAACCTAAGGCGAG 58.347 55.000 0.00 0.00 36.55 5.03
3065 3164 0.107848 TAAGGCAACCTAAGGCGAGC 60.108 55.000 0.00 0.00 36.55 5.03
3066 3165 2.046314 GGCAACCTAAGGCGAGCA 60.046 61.111 0.00 0.00 0.00 4.26
3067 3166 2.399356 GGCAACCTAAGGCGAGCAC 61.399 63.158 0.00 0.00 0.00 4.40
3068 3167 2.399356 GCAACCTAAGGCGAGCACC 61.399 63.158 0.00 0.00 0.00 5.01
3069 3168 1.003839 CAACCTAAGGCGAGCACCA 60.004 57.895 0.00 0.00 0.00 4.17
3070 3169 1.003718 AACCTAAGGCGAGCACCAC 60.004 57.895 0.00 0.00 0.00 4.16
3071 3170 2.125106 CCTAAGGCGAGCACCACC 60.125 66.667 0.00 0.00 0.00 4.61
3072 3171 2.125106 CTAAGGCGAGCACCACCC 60.125 66.667 0.00 0.00 0.00 4.61
3073 3172 4.077184 TAAGGCGAGCACCACCCG 62.077 66.667 0.00 0.00 0.00 5.28
3109 3208 4.014065 GCCTAAGCGCCTAAGACG 57.986 61.111 2.29 0.00 0.00 4.18
3110 3209 1.591863 GCCTAAGCGCCTAAGACGG 60.592 63.158 2.29 0.00 0.00 4.79
3111 3210 1.067582 CCTAAGCGCCTAAGACGGG 59.932 63.158 2.29 0.00 0.00 5.28
3112 3211 1.591863 CTAAGCGCCTAAGACGGGC 60.592 63.158 2.29 0.00 45.57 6.13
3123 3222 5.924475 CCTAAGACGGGCATATTTGTAAG 57.076 43.478 0.00 0.00 0.00 2.34
3124 3223 4.755123 CCTAAGACGGGCATATTTGTAAGG 59.245 45.833 0.00 0.00 0.00 2.69
3125 3224 2.572290 AGACGGGCATATTTGTAAGGC 58.428 47.619 0.00 0.00 0.00 4.35
3126 3225 1.263217 GACGGGCATATTTGTAAGGCG 59.737 52.381 0.00 0.00 0.00 5.52
3127 3226 0.040425 CGGGCATATTTGTAAGGCGC 60.040 55.000 0.00 0.00 0.00 6.53
3128 3227 1.318576 GGGCATATTTGTAAGGCGCT 58.681 50.000 7.64 0.00 34.95 5.92
3129 3228 1.001378 GGGCATATTTGTAAGGCGCTG 60.001 52.381 7.64 0.00 34.95 5.18
3130 3229 1.946768 GGCATATTTGTAAGGCGCTGA 59.053 47.619 7.64 0.00 0.00 4.26
3131 3230 2.357637 GGCATATTTGTAAGGCGCTGAA 59.642 45.455 7.64 0.00 0.00 3.02
3132 3231 3.181491 GGCATATTTGTAAGGCGCTGAAA 60.181 43.478 7.64 0.00 0.00 2.69
3133 3232 4.037690 GCATATTTGTAAGGCGCTGAAAG 58.962 43.478 7.64 0.00 0.00 2.62
3134 3233 4.601019 CATATTTGTAAGGCGCTGAAAGG 58.399 43.478 7.64 0.00 0.00 3.11
3135 3234 0.596082 TTTGTAAGGCGCTGAAAGGC 59.404 50.000 7.64 0.00 0.00 4.35
3144 3243 1.643832 GCTGAAAGGCGCCTTATCG 59.356 57.895 40.29 29.02 34.84 2.92
3161 3260 2.579201 GCTCAAGCGTCCTAGGCA 59.421 61.111 2.96 0.00 0.00 4.75
3162 3261 1.520342 GCTCAAGCGTCCTAGGCAG 60.520 63.158 2.96 0.97 0.00 4.85
3163 3262 1.142748 CTCAAGCGTCCTAGGCAGG 59.857 63.158 2.96 0.25 44.17 4.85
3186 3285 4.855531 ACGCCTTAAAAACAAAGCACTAG 58.144 39.130 0.00 0.00 0.00 2.57
3218 3317 1.003839 GCAGATCACAACGGGACCA 60.004 57.895 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.014297 AGTCAATCTTATCCAACTTTAACCAAG 57.986 33.333 0.00 0.00 38.64 3.61
31 32 8.934023 AGTCAATCTTATCCAACTTTAACCAA 57.066 30.769 0.00 0.00 0.00 3.67
32 33 8.934023 AAGTCAATCTTATCCAACTTTAACCA 57.066 30.769 0.00 0.00 34.23 3.67
33 34 9.010029 TGAAGTCAATCTTATCCAACTTTAACC 57.990 33.333 0.00 0.00 36.40 2.85
36 37 9.436957 GTCTGAAGTCAATCTTATCCAACTTTA 57.563 33.333 0.00 0.00 36.40 1.85
37 38 7.939039 TGTCTGAAGTCAATCTTATCCAACTTT 59.061 33.333 0.00 0.00 36.40 2.66
38 39 7.453393 TGTCTGAAGTCAATCTTATCCAACTT 58.547 34.615 0.00 0.00 36.40 2.66
39 40 7.009179 TGTCTGAAGTCAATCTTATCCAACT 57.991 36.000 0.00 0.00 36.40 3.16
40 41 7.672983 TTGTCTGAAGTCAATCTTATCCAAC 57.327 36.000 0.00 0.00 36.40 3.77
41 42 7.174946 GGTTTGTCTGAAGTCAATCTTATCCAA 59.825 37.037 0.00 0.00 36.40 3.53
42 43 6.655003 GGTTTGTCTGAAGTCAATCTTATCCA 59.345 38.462 0.00 0.00 36.40 3.41
43 44 6.881602 AGGTTTGTCTGAAGTCAATCTTATCC 59.118 38.462 0.00 0.00 36.40 2.59
44 45 7.913674 AGGTTTGTCTGAAGTCAATCTTATC 57.086 36.000 0.00 0.00 36.40 1.75
45 46 9.965902 ATTAGGTTTGTCTGAAGTCAATCTTAT 57.034 29.630 0.00 0.00 36.40 1.73
47 48 9.965902 ATATTAGGTTTGTCTGAAGTCAATCTT 57.034 29.630 0.00 0.00 39.32 2.40
48 49 9.388506 CATATTAGGTTTGTCTGAAGTCAATCT 57.611 33.333 0.00 0.00 0.00 2.40
49 50 8.125448 GCATATTAGGTTTGTCTGAAGTCAATC 58.875 37.037 0.00 0.00 0.00 2.67
50 51 7.611467 TGCATATTAGGTTTGTCTGAAGTCAAT 59.389 33.333 0.00 0.00 0.00 2.57
51 52 6.939730 TGCATATTAGGTTTGTCTGAAGTCAA 59.060 34.615 0.00 0.00 0.00 3.18
52 53 6.472016 TGCATATTAGGTTTGTCTGAAGTCA 58.528 36.000 0.00 0.00 0.00 3.41
53 54 6.818644 TCTGCATATTAGGTTTGTCTGAAGTC 59.181 38.462 0.00 0.00 0.00 3.01
54 55 6.711277 TCTGCATATTAGGTTTGTCTGAAGT 58.289 36.000 0.00 0.00 0.00 3.01
55 56 6.820656 ACTCTGCATATTAGGTTTGTCTGAAG 59.179 38.462 0.00 0.00 0.00 3.02
56 57 6.711277 ACTCTGCATATTAGGTTTGTCTGAA 58.289 36.000 0.00 0.00 0.00 3.02
57 58 6.299805 ACTCTGCATATTAGGTTTGTCTGA 57.700 37.500 0.00 0.00 0.00 3.27
58 59 8.492673 TTTACTCTGCATATTAGGTTTGTCTG 57.507 34.615 0.00 0.00 0.00 3.51
59 60 9.515226 TTTTTACTCTGCATATTAGGTTTGTCT 57.485 29.630 0.00 0.00 0.00 3.41
60 61 9.774742 CTTTTTACTCTGCATATTAGGTTTGTC 57.225 33.333 0.00 0.00 0.00 3.18
61 62 8.739972 CCTTTTTACTCTGCATATTAGGTTTGT 58.260 33.333 0.00 0.00 0.00 2.83
62 63 8.956426 TCCTTTTTACTCTGCATATTAGGTTTG 58.044 33.333 0.00 0.00 0.00 2.93
63 64 8.957466 GTCCTTTTTACTCTGCATATTAGGTTT 58.043 33.333 0.00 0.00 0.00 3.27
64 65 7.556635 GGTCCTTTTTACTCTGCATATTAGGTT 59.443 37.037 0.00 0.00 0.00 3.50
65 66 7.054751 GGTCCTTTTTACTCTGCATATTAGGT 58.945 38.462 0.00 0.00 0.00 3.08
66 67 6.202954 CGGTCCTTTTTACTCTGCATATTAGG 59.797 42.308 0.00 0.00 0.00 2.69
67 68 6.202954 CCGGTCCTTTTTACTCTGCATATTAG 59.797 42.308 0.00 0.00 0.00 1.73
68 69 6.053005 CCGGTCCTTTTTACTCTGCATATTA 58.947 40.000 0.00 0.00 0.00 0.98
69 70 4.881850 CCGGTCCTTTTTACTCTGCATATT 59.118 41.667 0.00 0.00 0.00 1.28
70 71 4.163458 TCCGGTCCTTTTTACTCTGCATAT 59.837 41.667 0.00 0.00 0.00 1.78
71 72 3.516300 TCCGGTCCTTTTTACTCTGCATA 59.484 43.478 0.00 0.00 0.00 3.14
72 73 2.304761 TCCGGTCCTTTTTACTCTGCAT 59.695 45.455 0.00 0.00 0.00 3.96
73 74 1.695242 TCCGGTCCTTTTTACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
74 75 2.347731 CTCCGGTCCTTTTTACTCTGC 58.652 52.381 0.00 0.00 0.00 4.26
75 76 2.565834 TCCTCCGGTCCTTTTTACTCTG 59.434 50.000 0.00 0.00 0.00 3.35
76 77 2.898662 TCCTCCGGTCCTTTTTACTCT 58.101 47.619 0.00 0.00 0.00 3.24
77 78 3.690475 TTCCTCCGGTCCTTTTTACTC 57.310 47.619 0.00 0.00 0.00 2.59
78 79 4.652679 ATTTCCTCCGGTCCTTTTTACT 57.347 40.909 0.00 0.00 0.00 2.24
79 80 5.247862 TGTATTTCCTCCGGTCCTTTTTAC 58.752 41.667 0.00 0.00 0.00 2.01
80 81 5.502089 TGTATTTCCTCCGGTCCTTTTTA 57.498 39.130 0.00 0.00 0.00 1.52
81 82 4.376225 TGTATTTCCTCCGGTCCTTTTT 57.624 40.909 0.00 0.00 0.00 1.94
82 83 4.332828 CTTGTATTTCCTCCGGTCCTTTT 58.667 43.478 0.00 0.00 0.00 2.27
83 84 3.872630 GCTTGTATTTCCTCCGGTCCTTT 60.873 47.826 0.00 0.00 0.00 3.11
84 85 2.355818 GCTTGTATTTCCTCCGGTCCTT 60.356 50.000 0.00 0.00 0.00 3.36
85 86 1.209747 GCTTGTATTTCCTCCGGTCCT 59.790 52.381 0.00 0.00 0.00 3.85
86 87 1.209747 AGCTTGTATTTCCTCCGGTCC 59.790 52.381 0.00 0.00 0.00 4.46
87 88 2.280628 CAGCTTGTATTTCCTCCGGTC 58.719 52.381 0.00 0.00 0.00 4.79
88 89 1.628846 ACAGCTTGTATTTCCTCCGGT 59.371 47.619 0.00 0.00 0.00 5.28
89 90 2.403252 ACAGCTTGTATTTCCTCCGG 57.597 50.000 0.00 0.00 0.00 5.14
90 91 3.309954 GCTTACAGCTTGTATTTCCTCCG 59.690 47.826 0.00 0.00 38.45 4.63
91 92 4.884458 GCTTACAGCTTGTATTTCCTCC 57.116 45.455 0.00 0.00 38.45 4.30
104 105 4.647424 AGACTATGACAGAGCTTACAGC 57.353 45.455 0.00 0.00 42.84 4.40
105 106 5.825679 ACCTAGACTATGACAGAGCTTACAG 59.174 44.000 0.00 0.00 0.00 2.74
106 107 5.590663 CACCTAGACTATGACAGAGCTTACA 59.409 44.000 0.00 0.00 0.00 2.41
107 108 5.009210 CCACCTAGACTATGACAGAGCTTAC 59.991 48.000 0.00 0.00 0.00 2.34
108 109 5.133941 CCACCTAGACTATGACAGAGCTTA 58.866 45.833 0.00 0.00 0.00 3.09
115 116 5.461516 TCCTAACCACCTAGACTATGACA 57.538 43.478 0.00 0.00 0.00 3.58
119 120 7.403837 TGAGTATCCTAACCACCTAGACTAT 57.596 40.000 0.00 0.00 0.00 2.12
183 184 8.586570 TGTGCTTGTTGTTATAAAAAGGATTG 57.413 30.769 0.00 0.00 0.00 2.67
187 188 6.420604 CACCTGTGCTTGTTGTTATAAAAAGG 59.579 38.462 0.00 0.00 0.00 3.11
194 195 3.818773 GGTACACCTGTGCTTGTTGTTAT 59.181 43.478 0.00 0.00 0.00 1.89
196 197 2.021457 GGTACACCTGTGCTTGTTGTT 58.979 47.619 0.00 0.00 0.00 2.83
197 198 1.675552 GGTACACCTGTGCTTGTTGT 58.324 50.000 0.00 0.00 0.00 3.32
198 199 0.951558 GGGTACACCTGTGCTTGTTG 59.048 55.000 0.00 0.00 35.85 3.33
203 217 2.226764 TGTTGGGTACACCTGTGCT 58.773 52.632 0.00 0.00 41.11 4.40
224 238 0.659957 GATCATCCACGGCAGAAAGC 59.340 55.000 0.00 0.00 44.65 3.51
225 239 2.028420 TGATCATCCACGGCAGAAAG 57.972 50.000 0.00 0.00 0.00 2.62
303 328 4.033776 CTCGCTGGGCCAAAGGGA 62.034 66.667 19.33 19.33 35.59 4.20
353 378 7.985752 GGTAAAGCTACAAGATCTTAGCCTTTA 59.014 37.037 21.43 19.76 41.51 1.85
354 379 6.824196 GGTAAAGCTACAAGATCTTAGCCTTT 59.176 38.462 21.43 20.46 41.51 3.11
451 482 8.192110 AGGAGTAGTTTAATTTGATCTCTCGAC 58.808 37.037 0.00 0.00 0.00 4.20
469 500 2.294078 GGTGGCCAGCAGGAGTAGT 61.294 63.158 29.70 0.00 36.89 2.73
547 587 0.396811 ACAGTACGGGAAGCTTGCTT 59.603 50.000 18.04 7.65 0.00 3.91
597 642 2.838748 ATCTCGTCTCCGTCTGGGCA 62.839 60.000 0.00 0.00 35.24 5.36
645 690 0.399075 AAACCACCCCGAAAGTCGAT 59.601 50.000 0.00 0.00 43.74 3.59
719 768 1.132199 CTGCTGTACGTTACCGCTCG 61.132 60.000 0.00 0.00 39.30 5.03
757 806 2.003830 TCCTCCTCCCGGATGAGATAT 58.996 52.381 18.62 0.00 39.01 1.63
758 807 1.456919 TCCTCCTCCCGGATGAGATA 58.543 55.000 18.62 6.10 39.01 1.98
759 808 2.255538 TCCTCCTCCCGGATGAGAT 58.744 57.895 18.62 0.00 39.01 2.75
760 809 3.769819 TCCTCCTCCCGGATGAGA 58.230 61.111 18.62 4.98 39.01 3.27
761 810 4.189539 CTCCTCCTCCCGGATGAG 57.810 66.667 0.73 11.77 42.92 2.90
762 811 0.105964 CTTCTCCTCCTCCCGGATGA 60.106 60.000 0.73 0.00 39.01 2.92
763 812 0.397816 ACTTCTCCTCCTCCCGGATG 60.398 60.000 0.73 0.00 39.01 3.51
764 813 0.105913 GACTTCTCCTCCTCCCGGAT 60.106 60.000 0.73 0.00 39.01 4.18
824 883 1.343681 GGTGGGGACTGGGTATAGTGA 60.344 57.143 0.00 0.00 0.00 3.41
825 884 1.129058 GGTGGGGACTGGGTATAGTG 58.871 60.000 0.00 0.00 0.00 2.74
826 885 0.030399 GGGTGGGGACTGGGTATAGT 60.030 60.000 0.00 0.00 0.00 2.12
827 886 0.767060 GGGGTGGGGACTGGGTATAG 60.767 65.000 0.00 0.00 0.00 1.31
828 887 1.319088 GGGGTGGGGACTGGGTATA 59.681 63.158 0.00 0.00 0.00 1.47
830 889 4.358181 GGGGGTGGGGACTGGGTA 62.358 72.222 0.00 0.00 0.00 3.69
848 929 3.181967 CCAGCGAGCGGAAAGACG 61.182 66.667 0.00 0.00 0.00 4.18
849 930 2.815647 CCCAGCGAGCGGAAAGAC 60.816 66.667 7.36 0.00 0.00 3.01
850 931 4.082523 CCCCAGCGAGCGGAAAGA 62.083 66.667 7.36 0.00 0.00 2.52
896 977 0.248621 GGCACGGCACAATAATGCTC 60.249 55.000 0.00 0.00 45.38 4.26
935 1016 2.680913 CCTCGCTCGCCCTTTGTTG 61.681 63.158 0.00 0.00 0.00 3.33
978 1059 2.944409 TACTCCTCCCTCGCTCGCTC 62.944 65.000 0.00 0.00 0.00 5.03
979 1060 3.045267 TACTCCTCCCTCGCTCGCT 62.045 63.158 0.00 0.00 0.00 4.93
980 1061 2.516460 TACTCCTCCCTCGCTCGC 60.516 66.667 0.00 0.00 0.00 5.03
981 1062 2.535788 CGTACTCCTCCCTCGCTCG 61.536 68.421 0.00 0.00 0.00 5.03
982 1063 0.535553 ATCGTACTCCTCCCTCGCTC 60.536 60.000 0.00 0.00 0.00 5.03
983 1064 0.820074 CATCGTACTCCTCCCTCGCT 60.820 60.000 0.00 0.00 0.00 4.93
1322 1403 2.659016 CTCCGTGAAGCTGCTCCA 59.341 61.111 1.00 0.00 0.00 3.86
2073 2160 1.153309 CTCCATCATGACAGCCGCA 60.153 57.895 0.00 0.00 0.00 5.69
2081 2168 1.114627 CGAGTCCACCTCCATCATGA 58.885 55.000 0.00 0.00 36.82 3.07
2238 2325 2.124695 CCCAAACCCCGAGCTAGC 60.125 66.667 6.62 6.62 0.00 3.42
2302 2390 5.297776 CGGATGATTCTAGTTGAAATTGCCT 59.702 40.000 0.00 0.00 38.29 4.75
2322 2410 4.273480 CGATTCTAGTTGGCAATTTCGGAT 59.727 41.667 1.92 0.00 0.00 4.18
2324 2412 3.374058 ACGATTCTAGTTGGCAATTTCGG 59.626 43.478 15.69 2.82 0.00 4.30
2329 2417 3.937814 TCACACGATTCTAGTTGGCAAT 58.062 40.909 1.92 0.00 0.00 3.56
2332 2420 4.946784 AATTCACACGATTCTAGTTGGC 57.053 40.909 0.00 0.00 0.00 4.52
2382 2476 7.519809 GCCAACTTCATTTCCAATTTACCAAAC 60.520 37.037 0.00 0.00 0.00 2.93
2433 2527 6.470235 GCTTTGGTCGAGATGAAATATGTTTG 59.530 38.462 0.00 0.00 0.00 2.93
2434 2528 6.150976 TGCTTTGGTCGAGATGAAATATGTTT 59.849 34.615 0.00 0.00 0.00 2.83
2627 2722 4.874970 ACAGTAAACCCGTTGTGTAGTAG 58.125 43.478 0.00 0.00 0.00 2.57
2669 2764 5.767816 ACCTTTTTAGCCGCCTTATATTG 57.232 39.130 0.00 0.00 0.00 1.90
2672 2767 6.834107 AGATTACCTTTTTAGCCGCCTTATA 58.166 36.000 0.00 0.00 0.00 0.98
2710 2806 1.618837 TCTACAGCTTATCCCGCATCC 59.381 52.381 0.00 0.00 0.00 3.51
2786 2882 4.843728 TCAAGAACAAGATATGGTGACCC 58.156 43.478 0.00 0.00 0.00 4.46
2965 3061 5.939764 TTCTGTATCTGCAGTCCTATGTT 57.060 39.130 14.67 0.00 37.70 2.71
3014 3113 2.413837 ACAATGGTAATATCTCCGCGC 58.586 47.619 0.00 0.00 0.00 6.86
3016 3115 7.860872 CCTTAAAAACAATGGTAATATCTCCGC 59.139 37.037 0.00 0.00 0.00 5.54
3021 3120 7.485810 ACCGCCTTAAAAACAATGGTAATATC 58.514 34.615 0.00 0.00 0.00 1.63
3029 3128 3.924073 GCCTTACCGCCTTAAAAACAATG 59.076 43.478 0.00 0.00 0.00 2.82
3030 3129 3.574826 TGCCTTACCGCCTTAAAAACAAT 59.425 39.130 0.00 0.00 0.00 2.71
3031 3130 2.957006 TGCCTTACCGCCTTAAAAACAA 59.043 40.909 0.00 0.00 0.00 2.83
3032 3131 2.584236 TGCCTTACCGCCTTAAAAACA 58.416 42.857 0.00 0.00 0.00 2.83
3033 3132 3.311106 GTTGCCTTACCGCCTTAAAAAC 58.689 45.455 0.00 0.00 0.00 2.43
3034 3133 2.296752 GGTTGCCTTACCGCCTTAAAAA 59.703 45.455 0.00 0.00 0.00 1.94
3035 3134 1.887854 GGTTGCCTTACCGCCTTAAAA 59.112 47.619 0.00 0.00 0.00 1.52
3036 3135 1.074244 AGGTTGCCTTACCGCCTTAAA 59.926 47.619 0.00 0.00 43.21 1.52
3037 3136 0.694196 AGGTTGCCTTACCGCCTTAA 59.306 50.000 0.00 0.00 43.21 1.85
3038 3137 1.570803 TAGGTTGCCTTACCGCCTTA 58.429 50.000 0.00 0.00 43.21 2.69
3039 3138 0.694196 TTAGGTTGCCTTACCGCCTT 59.306 50.000 0.00 0.00 43.21 4.35
3040 3139 0.252197 CTTAGGTTGCCTTACCGCCT 59.748 55.000 0.00 0.00 43.21 5.52
3041 3140 0.746923 CCTTAGGTTGCCTTACCGCC 60.747 60.000 0.00 0.00 43.21 6.13
3042 3141 1.374343 GCCTTAGGTTGCCTTACCGC 61.374 60.000 0.00 0.00 43.21 5.68
3043 3142 1.087771 CGCCTTAGGTTGCCTTACCG 61.088 60.000 0.00 0.00 43.21 4.02
3044 3143 0.251073 TCGCCTTAGGTTGCCTTACC 59.749 55.000 0.00 0.00 38.53 2.85
3045 3144 1.653151 CTCGCCTTAGGTTGCCTTAC 58.347 55.000 0.00 0.00 34.61 2.34
3046 3145 0.107848 GCTCGCCTTAGGTTGCCTTA 60.108 55.000 0.00 0.00 34.61 2.69
3047 3146 1.377333 GCTCGCCTTAGGTTGCCTT 60.377 57.895 0.00 0.00 34.61 4.35
3048 3147 2.269241 GCTCGCCTTAGGTTGCCT 59.731 61.111 0.00 0.00 37.71 4.75
3049 3148 2.046314 TGCTCGCCTTAGGTTGCC 60.046 61.111 0.00 0.00 0.00 4.52
3050 3149 2.399356 GGTGCTCGCCTTAGGTTGC 61.399 63.158 0.00 2.85 0.00 4.17
3051 3150 1.003839 TGGTGCTCGCCTTAGGTTG 60.004 57.895 0.00 0.00 0.00 3.77
3052 3151 1.003718 GTGGTGCTCGCCTTAGGTT 60.004 57.895 0.00 0.00 0.00 3.50
3053 3152 2.663196 GTGGTGCTCGCCTTAGGT 59.337 61.111 0.00 0.00 0.00 3.08
3054 3153 2.125106 GGTGGTGCTCGCCTTAGG 60.125 66.667 0.00 0.00 42.62 2.69
3055 3154 2.125106 GGGTGGTGCTCGCCTTAG 60.125 66.667 9.43 0.00 45.18 2.18
3056 3155 4.077184 CGGGTGGTGCTCGCCTTA 62.077 66.667 9.43 0.00 45.18 2.69
3093 3192 1.067582 CCCGTCTTAGGCGCTTAGG 59.932 63.158 7.64 4.46 0.00 2.69
3094 3193 1.591863 GCCCGTCTTAGGCGCTTAG 60.592 63.158 7.64 2.20 41.41 2.18
3095 3194 2.497770 GCCCGTCTTAGGCGCTTA 59.502 61.111 7.64 0.00 41.41 3.09
3101 3200 4.755123 CCTTACAAATATGCCCGTCTTAGG 59.245 45.833 0.00 0.00 0.00 2.69
3102 3201 4.213482 GCCTTACAAATATGCCCGTCTTAG 59.787 45.833 0.00 0.00 0.00 2.18
3103 3202 4.131596 GCCTTACAAATATGCCCGTCTTA 58.868 43.478 0.00 0.00 0.00 2.10
3104 3203 2.949644 GCCTTACAAATATGCCCGTCTT 59.050 45.455 0.00 0.00 0.00 3.01
3105 3204 2.572290 GCCTTACAAATATGCCCGTCT 58.428 47.619 0.00 0.00 0.00 4.18
3106 3205 1.263217 CGCCTTACAAATATGCCCGTC 59.737 52.381 0.00 0.00 0.00 4.79
3107 3206 1.305201 CGCCTTACAAATATGCCCGT 58.695 50.000 0.00 0.00 0.00 5.28
3108 3207 0.040425 GCGCCTTACAAATATGCCCG 60.040 55.000 0.00 0.00 0.00 6.13
3109 3208 1.001378 CAGCGCCTTACAAATATGCCC 60.001 52.381 2.29 0.00 0.00 5.36
3110 3209 1.946768 TCAGCGCCTTACAAATATGCC 59.053 47.619 2.29 0.00 0.00 4.40
3111 3210 3.691049 TTCAGCGCCTTACAAATATGC 57.309 42.857 2.29 0.00 0.00 3.14
3112 3211 4.601019 CCTTTCAGCGCCTTACAAATATG 58.399 43.478 2.29 0.00 0.00 1.78
3113 3212 3.066760 GCCTTTCAGCGCCTTACAAATAT 59.933 43.478 2.29 0.00 0.00 1.28
3114 3213 2.422127 GCCTTTCAGCGCCTTACAAATA 59.578 45.455 2.29 0.00 0.00 1.40
3115 3214 1.202348 GCCTTTCAGCGCCTTACAAAT 59.798 47.619 2.29 0.00 0.00 2.32
3116 3215 0.596082 GCCTTTCAGCGCCTTACAAA 59.404 50.000 2.29 0.00 0.00 2.83
3117 3216 2.253513 GCCTTTCAGCGCCTTACAA 58.746 52.632 2.29 0.00 0.00 2.41
3118 3217 3.981308 GCCTTTCAGCGCCTTACA 58.019 55.556 2.29 0.00 0.00 2.41
3126 3225 1.643832 CGATAAGGCGCCTTTCAGC 59.356 57.895 43.93 29.30 37.47 4.26
3144 3243 1.520342 CTGCCTAGGACGCTTGAGC 60.520 63.158 14.75 0.00 37.78 4.26
3145 3244 4.823276 CTGCCTAGGACGCTTGAG 57.177 61.111 14.75 0.00 0.00 3.02
3159 3258 2.785713 TTGTTTTTAAGGCGTCCTGC 57.214 45.000 0.00 0.00 45.38 4.85
3160 3259 3.049912 GCTTTGTTTTTAAGGCGTCCTG 58.950 45.455 0.00 0.00 32.13 3.86
3161 3260 2.691011 TGCTTTGTTTTTAAGGCGTCCT 59.309 40.909 0.00 0.00 35.64 3.85
3162 3261 2.792674 GTGCTTTGTTTTTAAGGCGTCC 59.207 45.455 0.00 0.00 35.64 4.79
3163 3262 3.702330 AGTGCTTTGTTTTTAAGGCGTC 58.298 40.909 0.00 0.00 35.64 5.19
3164 3263 3.793797 AGTGCTTTGTTTTTAAGGCGT 57.206 38.095 0.00 0.00 35.64 5.68
3165 3264 4.675114 CACTAGTGCTTTGTTTTTAAGGCG 59.325 41.667 10.54 0.00 35.64 5.52
3166 3265 5.827666 TCACTAGTGCTTTGTTTTTAAGGC 58.172 37.500 18.45 0.00 33.72 4.35
3167 3266 5.915196 GCTCACTAGTGCTTTGTTTTTAAGG 59.085 40.000 18.45 0.00 0.00 2.69
3168 3267 6.494842 TGCTCACTAGTGCTTTGTTTTTAAG 58.505 36.000 18.45 6.71 35.37 1.85
3169 3268 6.094881 ACTGCTCACTAGTGCTTTGTTTTTAA 59.905 34.615 18.45 0.00 35.37 1.52
3170 3269 5.588648 ACTGCTCACTAGTGCTTTGTTTTTA 59.411 36.000 18.45 0.00 35.37 1.52
3171 3270 4.399303 ACTGCTCACTAGTGCTTTGTTTTT 59.601 37.500 18.45 0.00 35.37 1.94
3172 3271 3.947834 ACTGCTCACTAGTGCTTTGTTTT 59.052 39.130 18.45 0.00 35.37 2.43
3173 3272 3.545703 ACTGCTCACTAGTGCTTTGTTT 58.454 40.909 18.45 0.00 35.37 2.83
3174 3273 3.199880 ACTGCTCACTAGTGCTTTGTT 57.800 42.857 18.45 0.00 35.37 2.83
3175 3274 2.918712 ACTGCTCACTAGTGCTTTGT 57.081 45.000 18.45 11.04 35.37 2.83
3176 3275 3.313526 ACAAACTGCTCACTAGTGCTTTG 59.686 43.478 18.45 18.34 36.39 2.77
3177 3276 3.313526 CACAAACTGCTCACTAGTGCTTT 59.686 43.478 18.45 7.13 35.37 3.51
3186 3285 1.198637 GATCTGCCACAAACTGCTCAC 59.801 52.381 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.