Multiple sequence alignment - TraesCS3A01G157500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G157500 chr3A 100.000 6918 0 0 1 6918 154657663 154664580 0.000000e+00 12776.0
1 TraesCS3A01G157500 chr3A 90.289 484 28 5 4908 5380 154662408 154662883 3.550000e-172 616.0
2 TraesCS3A01G157500 chr3A 90.289 484 28 5 4746 5221 154662570 154663042 3.550000e-172 616.0
3 TraesCS3A01G157500 chr3A 90.184 326 20 6 4746 5063 154662721 154663042 1.390000e-111 414.0
4 TraesCS3A01G157500 chr3A 86.986 292 28 5 3272 3555 154660629 154660918 3.110000e-83 320.0
5 TraesCS3A01G157500 chr3A 86.986 292 28 5 2967 3256 154660934 154661217 3.110000e-83 320.0
6 TraesCS3A01G157500 chr3A 92.262 168 8 5 5217 5380 154662408 154662574 4.170000e-57 233.0
7 TraesCS3A01G157500 chr3A 94.488 127 5 2 6749 6873 547311049 547310923 1.970000e-45 195.0
8 TraesCS3A01G157500 chr3A 100.000 78 0 0 3551 3628 154661290 154661213 2.010000e-30 145.0
9 TraesCS3A01G157500 chr3B 95.011 1784 61 9 3194 4954 199528938 199530716 0.000000e+00 2776.0
10 TraesCS3A01G157500 chr3B 96.822 881 25 2 2616 3493 199527974 199528854 0.000000e+00 1469.0
11 TraesCS3A01G157500 chr3B 92.988 927 55 5 5153 6070 199531011 199531936 0.000000e+00 1343.0
12 TraesCS3A01G157500 chr3B 89.401 802 60 19 285 1075 199526104 199526891 0.000000e+00 987.0
13 TraesCS3A01G157500 chr3B 90.000 730 39 18 1099 1815 199526884 199527592 0.000000e+00 913.0
14 TraesCS3A01G157500 chr3B 88.032 376 30 7 1785 2149 199527591 199527962 1.380000e-116 431.0
15 TraesCS3A01G157500 chr3B 93.939 231 10 1 4995 5221 199531011 199531241 5.140000e-91 346.0
16 TraesCS3A01G157500 chr3B 87.713 293 25 6 3272 3555 199528325 199528615 1.440000e-86 331.0
17 TraesCS3A01G157500 chr3B 87.031 293 29 5 2967 3256 199529016 199529302 8.660000e-84 322.0
18 TraesCS3A01G157500 chr3B 91.518 224 11 2 4908 5123 199530511 199530734 1.130000e-77 302.0
19 TraesCS3A01G157500 chr3B 84.393 346 9 17 6134 6464 199532091 199532406 1.460000e-76 298.0
20 TraesCS3A01G157500 chr3B 90.171 234 9 6 4841 5063 199531011 199531241 6.790000e-75 292.0
21 TraesCS3A01G157500 chr3B 87.826 230 21 3 2967 3195 199528631 199528854 5.320000e-66 263.0
22 TraesCS3A01G157500 chr3B 87.907 215 6 8 6530 6736 199533884 199534086 1.160000e-57 235.0
23 TraesCS3A01G157500 chr3B 96.875 64 1 1 3492 3555 199528938 199529000 9.490000e-19 106.0
24 TraesCS3A01G157500 chr3B 96.154 52 2 0 6100 6151 199532024 199532075 1.240000e-12 86.1
25 TraesCS3A01G157500 chr3B 85.057 87 4 1 3551 3628 199529384 199529298 5.750000e-11 80.5
26 TraesCS3A01G157500 chr3D 95.168 1759 51 9 3305 5033 136723980 136725734 0.000000e+00 2747.0
27 TraesCS3A01G157500 chr3D 94.306 1124 56 5 4954 6070 136725889 136727011 0.000000e+00 1714.0
28 TraesCS3A01G157500 chr3D 88.353 1245 83 28 1099 2309 136721915 136723131 0.000000e+00 1439.0
29 TraesCS3A01G157500 chr3D 95.771 875 33 2 2417 3290 136723126 136723997 0.000000e+00 1408.0
30 TraesCS3A01G157500 chr3D 90.705 936 56 14 3 913 136720872 136721801 0.000000e+00 1218.0
31 TraesCS3A01G157500 chr3D 92.793 444 21 5 4786 5221 136725875 136726315 3.520000e-177 632.0
32 TraesCS3A01G157500 chr3D 94.539 293 15 1 5059 5350 136725442 136725734 1.060000e-122 451.0
33 TraesCS3A01G157500 chr3D 95.406 283 13 0 5098 5380 136725875 136726157 1.060000e-122 451.0
34 TraesCS3A01G157500 chr3D 89.544 373 16 10 6100 6461 136727099 136727459 1.060000e-122 451.0
35 TraesCS3A01G157500 chr3D 91.411 326 16 4 4746 5063 136725994 136726315 2.960000e-118 436.0
36 TraesCS3A01G157500 chr3D 92.150 293 14 3 4908 5191 136725442 136725734 8.360000e-109 405.0
37 TraesCS3A01G157500 chr3D 86.007 293 27 9 3272 3555 136723676 136723963 1.130000e-77 302.0
38 TraesCS3A01G157500 chr3D 92.216 167 9 4 4746 4912 136726153 136726315 4.170000e-57 233.0
39 TraesCS3A01G157500 chr3D 92.121 165 11 2 5217 5380 136725442 136725605 1.500000e-56 231.0
40 TraesCS3A01G157500 chr3D 90.728 151 11 3 6748 6895 105101827 105101677 1.520000e-46 198.0
41 TraesCS3A01G157500 chr3D 91.935 124 10 0 952 1075 136721799 136721922 2.560000e-39 174.0
42 TraesCS3A01G157500 chr3D 85.057 87 4 1 3551 3628 136724314 136724228 5.750000e-11 80.5
43 TraesCS3A01G157500 chr3D 80.000 115 13 4 1393 1506 107173484 107173379 7.440000e-10 76.8
44 TraesCS3A01G157500 chr2A 88.717 1294 120 16 3631 4914 88985760 88984483 0.000000e+00 1557.0
45 TraesCS3A01G157500 chr2A 85.054 1298 151 20 1989 3249 88987063 88985772 0.000000e+00 1282.0
46 TraesCS3A01G157500 chr2A 81.870 877 126 19 5220 6070 88984643 88983774 0.000000e+00 708.0
47 TraesCS3A01G157500 chr2A 88.246 553 52 6 1116 1656 88987822 88987271 0.000000e+00 649.0
48 TraesCS3A01G157500 chr2A 86.458 288 28 9 3271 3548 88986058 88985772 8.720000e-79 305.0
49 TraesCS3A01G157500 chr2D 88.578 1287 122 13 3631 4909 89261465 89260196 0.000000e+00 1539.0
50 TraesCS3A01G157500 chr2D 83.159 766 83 29 1118 1871 89263480 89262749 0.000000e+00 658.0
51 TraesCS3A01G157500 chr2D 84.451 701 70 17 1989 2659 89262727 89262036 0.000000e+00 654.0
52 TraesCS3A01G157500 chr2D 83.146 445 56 13 648 1079 89263917 89263479 8.410000e-104 388.0
53 TraesCS3A01G157500 chr2D 87.500 288 25 8 3271 3548 89261763 89261477 8.660000e-84 322.0
54 TraesCS3A01G157500 chr2D 80.636 346 43 15 6104 6441 89259426 89259097 5.360000e-61 246.0
55 TraesCS3A01G157500 chr2B 86.109 1267 130 19 2021 3249 141840620 141839362 0.000000e+00 1323.0
56 TraesCS3A01G157500 chr2B 88.329 694 67 10 4220 4909 141838120 141837437 0.000000e+00 821.0
57 TraesCS3A01G157500 chr2B 82.870 864 118 15 5229 6068 141837583 141836726 0.000000e+00 749.0
58 TraesCS3A01G157500 chr2B 88.514 592 58 6 3631 4222 141839350 141838769 0.000000e+00 708.0
59 TraesCS3A01G157500 chr2B 83.818 791 78 30 1116 1900 141841449 141840703 0.000000e+00 706.0
60 TraesCS3A01G157500 chr2B 84.014 294 30 10 3271 3548 141839654 141839362 4.110000e-67 267.0
61 TraesCS3A01G157500 chr2B 81.752 274 28 12 6175 6441 141836527 141836269 7.030000e-50 209.0
62 TraesCS3A01G157500 chrUn 90.850 153 11 3 6746 6895 68660198 68660046 1.180000e-47 202.0
63 TraesCS3A01G157500 chrUn 88.554 166 13 5 6747 6907 38961986 38962150 5.470000e-46 196.0
64 TraesCS3A01G157500 chr7B 85.116 215 13 5 6530 6736 625592060 625591857 1.180000e-47 202.0
65 TraesCS3A01G157500 chr7B 87.943 141 13 4 6747 6883 659415836 659415696 5.550000e-36 163.0
66 TraesCS3A01G157500 chr1D 90.850 153 11 3 6746 6895 403942821 403942669 1.180000e-47 202.0
67 TraesCS3A01G157500 chr5D 89.333 150 11 4 6749 6895 565904539 565904686 4.260000e-42 183.0
68 TraesCS3A01G157500 chr5A 88.667 150 12 5 6751 6895 702451604 702451455 1.980000e-40 178.0
69 TraesCS3A01G157500 chr7D 86.275 153 15 4 6745 6893 554843280 554843430 2.000000e-35 161.0
70 TraesCS3A01G157500 chr5B 87.692 65 8 0 1393 1457 381362130 381362066 7.440000e-10 76.8
71 TraesCS3A01G157500 chr5B 87.879 66 6 2 1393 1457 487499263 487499327 7.440000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G157500 chr3A 154657663 154664580 6917 False 2185.000000 12776 90.999429 1 6918 7 chr3A.!!$F1 6917
1 TraesCS3A01G157500 chr3B 199526104 199534086 7982 False 656.256250 2776 90.986312 285 6736 16 chr3B.!!$F1 6451
2 TraesCS3A01G157500 chr3D 136720872 136727459 6587 False 819.466667 2747 92.161667 3 6461 15 chr3D.!!$F1 6458
3 TraesCS3A01G157500 chr2A 88983774 88987822 4048 True 900.200000 1557 86.069000 1116 6070 5 chr2A.!!$R1 4954
4 TraesCS3A01G157500 chr2D 89259097 89263917 4820 True 634.500000 1539 84.578333 648 6441 6 chr2D.!!$R1 5793
5 TraesCS3A01G157500 chr2B 141836269 141841449 5180 True 683.285714 1323 85.058000 1116 6441 7 chr2B.!!$R1 5325

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
748 771 0.028902 GACACTTTTCAAACCGCGCT 59.971 50.000 5.56 0.00 0.00 5.92 F
750 773 0.845768 CACTTTTCAAACCGCGCTTG 59.154 50.000 5.56 6.72 0.00 4.01 F
1707 1774 1.066858 TGAAGCTCGATCCTGGTTCAC 60.067 52.381 17.64 1.69 43.02 3.18 F
2219 2375 1.511850 TGATCAACAGCCTGTCGTTG 58.488 50.000 0.00 0.00 43.09 4.10 F
2589 2764 0.443478 TTGTCTTCATGCACGCGATG 59.557 50.000 15.93 6.51 0.00 3.84 F
3570 4177 0.613853 TACTCCCTCCGTCCCACAAG 60.614 60.000 0.00 0.00 0.00 3.16 F
4592 5859 0.532862 ACAGGCACTACATATGCGCC 60.533 55.000 4.18 14.89 44.37 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2225 2381 0.306840 TCGTCATCTGTATCGTCGCC 59.693 55.000 0.00 0.0 0.00 5.54 R
2575 2750 0.652071 GATCACATCGCGTGCATGAA 59.348 50.000 10.93 0.0 45.92 2.57 R
2578 2753 1.302366 AATGATCACATCGCGTGCAT 58.698 45.000 5.77 0.0 45.92 3.96 R
3998 4614 4.310022 TCGATATTTGGGTTCTTGGGTT 57.690 40.909 0.00 0.0 0.00 4.11 R
4410 5677 1.884067 GCACTAAGTCCTTGCTTGGCT 60.884 52.381 0.00 0.0 33.26 4.75 R
5386 6921 1.583477 GCTCTGAGCAACCTTTGGC 59.417 57.895 24.02 0.0 41.89 4.52 R
6509 8231 0.031515 TCCTAATCCCGCCCTCTTGA 60.032 55.000 0.00 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 71 9.817365 CTAAACACATTGTCAAGTTTCTCATAG 57.183 33.333 6.92 0.00 35.90 2.23
87 90 9.739276 TCTCATAGGTTTGATTGTGAAAGTTAT 57.261 29.630 0.00 0.00 0.00 1.89
100 103 7.566760 TGTGAAAGTTATATGCCCATGTAAG 57.433 36.000 0.00 0.00 0.00 2.34
105 108 7.568199 AAGTTATATGCCCATGTAAGTTGAC 57.432 36.000 13.58 0.00 36.96 3.18
106 109 6.658849 AGTTATATGCCCATGTAAGTTGACA 58.341 36.000 0.00 0.00 27.86 3.58
115 118 6.049149 CCCATGTAAGTTGACATCTCGTAAT 58.951 40.000 0.00 0.00 37.99 1.89
150 153 3.976490 TACTGCCCTCTCCACCCCG 62.976 68.421 0.00 0.00 0.00 5.73
157 160 3.901797 CTCTCCACCCCGCCAACAC 62.902 68.421 0.00 0.00 0.00 3.32
175 178 1.871039 CACCGAGAAAACCATGTCGTT 59.129 47.619 0.00 0.00 0.00 3.85
188 191 0.319900 TGTCGTTGCTGCCTCTCTTC 60.320 55.000 0.00 0.00 0.00 2.87
208 211 5.422331 TCTTCCGTTGTCTATTCTTCCTCAT 59.578 40.000 0.00 0.00 0.00 2.90
226 229 1.322637 CATCACTGTTGCGAGATGACG 59.677 52.381 0.00 0.00 40.10 4.35
235 238 4.032786 TGTTGCGAGATGACGAACATATTG 59.967 41.667 0.00 0.00 39.56 1.90
254 257 3.173540 TTCCCGCTGGAATGACATG 57.826 52.632 5.36 0.00 45.88 3.21
265 268 5.191727 TGGAATGACATGGGTTTATCACT 57.808 39.130 0.00 0.00 0.00 3.41
276 279 2.609459 GGTTTATCACTGAGACCATGCG 59.391 50.000 0.00 0.00 0.00 4.73
379 383 2.348498 CCGCATCGTCGAAAACATATGG 60.348 50.000 7.80 0.00 0.00 2.74
471 490 2.103094 CGGTCATAAATCCTGCCTCTGA 59.897 50.000 0.00 0.00 0.00 3.27
472 491 3.471680 GGTCATAAATCCTGCCTCTGAC 58.528 50.000 0.00 0.00 0.00 3.51
485 504 2.543445 GCCTCTGACTGAGATGATCACG 60.543 54.545 10.70 0.00 45.39 4.35
506 525 4.403432 ACGAGAACCCGGTCATAAATTCTA 59.597 41.667 0.00 0.00 0.00 2.10
519 538 0.544697 AATTCTACGATGGCCGGGTT 59.455 50.000 2.18 0.00 43.93 4.11
549 568 6.480320 TGAAACCCAATACAAAATTGGTTTCG 59.520 34.615 20.63 11.38 45.32 3.46
550 569 4.311606 ACCCAATACAAAATTGGTTTCGC 58.688 39.130 14.06 0.00 45.32 4.70
748 771 0.028902 GACACTTTTCAAACCGCGCT 59.971 50.000 5.56 0.00 0.00 5.92
750 773 0.845768 CACTTTTCAAACCGCGCTTG 59.154 50.000 5.56 6.72 0.00 4.01
795 818 2.267426 CACGGCGTCATTCAATCACTA 58.733 47.619 10.85 0.00 0.00 2.74
833 856 5.525199 TCTGTTTCCGCTTTTACCATTTTC 58.475 37.500 0.00 0.00 0.00 2.29
834 857 5.300792 TCTGTTTCCGCTTTTACCATTTTCT 59.699 36.000 0.00 0.00 0.00 2.52
839 862 4.023536 TCCGCTTTTACCATTTTCTCACAC 60.024 41.667 0.00 0.00 0.00 3.82
866 889 1.559065 TTACCCCAGCCCAGTACTGC 61.559 60.000 17.86 7.24 33.65 4.40
876 900 2.042843 AGTACTGCTCCTCCCCCG 60.043 66.667 0.00 0.00 0.00 5.73
964 998 3.164977 TCAAGCACCCCGACCACA 61.165 61.111 0.00 0.00 0.00 4.17
976 1010 1.746517 GACCACAAGGACTCCACGT 59.253 57.895 0.00 0.00 38.69 4.49
1046 1080 3.561313 GCAAGTTCATCCCCTCCACTTTA 60.561 47.826 0.00 0.00 0.00 1.85
1075 1109 2.607635 CGTGCGGCTGTTGATTTATAGT 59.392 45.455 0.00 0.00 0.00 2.12
1076 1110 3.063452 CGTGCGGCTGTTGATTTATAGTT 59.937 43.478 0.00 0.00 0.00 2.24
1077 1111 4.342772 GTGCGGCTGTTGATTTATAGTTG 58.657 43.478 0.00 0.00 0.00 3.16
1078 1112 4.006989 TGCGGCTGTTGATTTATAGTTGT 58.993 39.130 0.00 0.00 0.00 3.32
1079 1113 5.064198 GTGCGGCTGTTGATTTATAGTTGTA 59.936 40.000 0.00 0.00 0.00 2.41
1080 1114 5.820423 TGCGGCTGTTGATTTATAGTTGTAT 59.180 36.000 0.00 0.00 0.00 2.29
1081 1115 6.317642 TGCGGCTGTTGATTTATAGTTGTATT 59.682 34.615 0.00 0.00 0.00 1.89
1082 1116 7.496263 TGCGGCTGTTGATTTATAGTTGTATTA 59.504 33.333 0.00 0.00 0.00 0.98
1083 1117 8.504005 GCGGCTGTTGATTTATAGTTGTATTAT 58.496 33.333 0.00 0.00 0.00 1.28
1128 1162 5.368256 AGTATTATGTAGTTAGCGGTCGG 57.632 43.478 0.00 0.00 0.00 4.79
1145 1179 2.488153 GTCGGGGGTTTCTTGATTTCTG 59.512 50.000 0.00 0.00 0.00 3.02
1173 1207 6.524586 CGTTCTCTTGAATCTTTGGTTAATGC 59.475 38.462 0.00 0.00 34.40 3.56
1222 1263 2.364970 TGTGGAGGGCTCATTTTGTTTG 59.635 45.455 0.00 0.00 0.00 2.93
1254 1302 5.241403 TCCTGTGATAGCTTTGGAGAAAA 57.759 39.130 0.00 0.00 0.00 2.29
1467 1533 3.412408 GCAGGAGGAGGTTCCCCC 61.412 72.222 0.00 0.00 37.19 5.40
1475 1541 4.569214 AGGTTCCCCCTCTGTCAG 57.431 61.111 0.00 0.00 40.71 3.51
1644 1710 3.357079 GTTGGCCACTGCAGGTCG 61.357 66.667 19.93 5.85 40.13 4.79
1645 1711 3.555324 TTGGCCACTGCAGGTCGA 61.555 61.111 19.93 0.00 40.13 4.20
1672 1739 7.172190 CGTAGTCTTTCATATCAGCCATTTCAT 59.828 37.037 0.00 0.00 0.00 2.57
1673 1740 7.507733 AGTCTTTCATATCAGCCATTTCATC 57.492 36.000 0.00 0.00 0.00 2.92
1674 1741 7.058525 AGTCTTTCATATCAGCCATTTCATCA 58.941 34.615 0.00 0.00 0.00 3.07
1675 1742 7.228906 AGTCTTTCATATCAGCCATTTCATCAG 59.771 37.037 0.00 0.00 0.00 2.90
1676 1743 7.013083 GTCTTTCATATCAGCCATTTCATCAGT 59.987 37.037 0.00 0.00 0.00 3.41
1677 1744 7.558807 TCTTTCATATCAGCCATTTCATCAGTT 59.441 33.333 0.00 0.00 0.00 3.16
1681 1748 7.977293 TCATATCAGCCATTTCATCAGTTTTTG 59.023 33.333 0.00 0.00 0.00 2.44
1685 1752 6.479660 TCAGCCATTTCATCAGTTTTTGTTTC 59.520 34.615 0.00 0.00 0.00 2.78
1686 1753 6.480981 CAGCCATTTCATCAGTTTTTGTTTCT 59.519 34.615 0.00 0.00 0.00 2.52
1699 1766 4.749245 TTTGTTTCTTGAAGCTCGATCC 57.251 40.909 0.00 0.00 0.00 3.36
1700 1767 3.685139 TGTTTCTTGAAGCTCGATCCT 57.315 42.857 0.00 0.00 0.00 3.24
1702 1769 2.675348 GTTTCTTGAAGCTCGATCCTGG 59.325 50.000 0.00 0.00 0.00 4.45
1705 1772 2.093973 TCTTGAAGCTCGATCCTGGTTC 60.094 50.000 14.05 14.05 40.02 3.62
1706 1773 1.266178 TGAAGCTCGATCCTGGTTCA 58.734 50.000 17.64 17.64 44.80 3.18
1707 1774 1.066858 TGAAGCTCGATCCTGGTTCAC 60.067 52.381 17.64 1.69 43.02 3.18
1710 1777 2.457598 AGCTCGATCCTGGTTCACTTA 58.542 47.619 5.66 0.00 0.00 2.24
1711 1778 2.166664 AGCTCGATCCTGGTTCACTTAC 59.833 50.000 5.66 0.00 0.00 2.34
1712 1779 2.166664 GCTCGATCCTGGTTCACTTACT 59.833 50.000 5.66 0.00 0.00 2.24
1713 1780 3.380637 GCTCGATCCTGGTTCACTTACTA 59.619 47.826 5.66 0.00 0.00 1.82
1714 1781 4.038162 GCTCGATCCTGGTTCACTTACTAT 59.962 45.833 5.66 0.00 0.00 2.12
1717 1784 4.508124 CGATCCTGGTTCACTTACTATTGC 59.492 45.833 5.66 0.00 0.00 3.56
1752 1819 6.673978 TCTGATAATCTATAATGGACCCTGGG 59.326 42.308 12.28 12.28 0.00 4.45
1753 1820 5.731187 TGATAATCTATAATGGACCCTGGGG 59.269 44.000 18.88 7.87 42.03 4.96
1759 1826 4.642489 ATAATGGACCCTGGGGAAAAAT 57.358 40.909 18.88 0.21 38.96 1.82
1760 1827 2.252535 ATGGACCCTGGGGAAAAATG 57.747 50.000 18.88 0.00 38.96 2.32
1762 1829 2.074579 TGGACCCTGGGGAAAAATGTA 58.925 47.619 18.88 0.00 38.96 2.29
1892 1996 9.598517 AGCTTATGCATTCTCTTAGATTATAGC 57.401 33.333 3.54 0.00 42.74 2.97
1904 2008 8.142994 TCTTAGATTATAGCTTTCCTTTTGCG 57.857 34.615 0.00 0.00 0.00 4.85
1906 2010 6.124088 AGATTATAGCTTTCCTTTTGCGTG 57.876 37.500 0.00 0.00 0.00 5.34
1958 2063 5.049267 CCATTTGATTGGCTTTTCTTTGTGG 60.049 40.000 0.00 0.00 0.00 4.17
1983 2088 4.095483 CCTGAACCTTGATCACACTTATGC 59.905 45.833 0.00 0.00 0.00 3.14
2013 2118 6.677913 TGCCTCTGTTAAAGTAAAATGAAGC 58.322 36.000 0.00 0.00 0.00 3.86
2064 2204 8.048514 TCTTCTCATGTTTCATTATCATGGTGA 58.951 33.333 0.00 0.00 39.25 4.02
2128 2280 9.995957 GATTATCTGTTTCTTTTTAGCCTTCTC 57.004 33.333 0.00 0.00 0.00 2.87
2219 2375 1.511850 TGATCAACAGCCTGTCGTTG 58.488 50.000 0.00 0.00 43.09 4.10
2225 2381 3.249799 TCAACAGCCTGTCGTTGTTAATG 59.750 43.478 0.00 0.00 42.48 1.90
2294 2450 5.105146 AGTGAACCATTGGTTGTTGCTTTAA 60.105 36.000 25.45 0.00 46.95 1.52
2295 2451 5.582665 GTGAACCATTGGTTGTTGCTTTAAA 59.417 36.000 25.45 0.00 46.95 1.52
2354 2526 7.013220 AGATATACTCCATTTGTGGCTCTAGA 58.987 38.462 0.00 0.00 0.00 2.43
2355 2527 7.677745 AGATATACTCCATTTGTGGCTCTAGAT 59.322 37.037 0.00 0.00 0.00 1.98
2356 2528 4.414337 ACTCCATTTGTGGCTCTAGATC 57.586 45.455 0.00 0.00 0.00 2.75
2364 2539 2.427453 TGTGGCTCTAGATCCTCGTTTC 59.573 50.000 13.63 0.00 0.00 2.78
2370 2545 5.394773 GGCTCTAGATCCTCGTTTCTTTTCT 60.395 44.000 5.32 0.00 0.00 2.52
2373 2548 7.201750 GCTCTAGATCCTCGTTTCTTTTCTCTA 60.202 40.741 0.00 0.00 0.00 2.43
2393 2568 5.359756 TCTATCATCTCACAATTTCACGGG 58.640 41.667 0.00 0.00 0.00 5.28
2413 2588 4.330074 CGGGATTACAAGTGTTCAGCTTAG 59.670 45.833 0.00 0.00 0.00 2.18
2472 2647 4.329545 ATTGTGCGGCCACGGAGT 62.330 61.111 2.24 0.00 45.04 3.85
2575 2750 3.072184 AGTCAGCAGTTCCATTCTTGTCT 59.928 43.478 0.00 0.00 0.00 3.41
2578 2753 3.817084 CAGCAGTTCCATTCTTGTCTTCA 59.183 43.478 0.00 0.00 0.00 3.02
2589 2764 0.443478 TTGTCTTCATGCACGCGATG 59.557 50.000 15.93 6.51 0.00 3.84
2605 2780 2.413112 GCGATGTGATCATTATCGTGGG 59.587 50.000 29.58 14.28 43.95 4.61
2769 2944 0.829990 CAGAAGAAGAGAGGGAGGCC 59.170 60.000 0.00 0.00 0.00 5.19
2777 2952 1.904990 GAGAGGGAGGCCTGTCAACC 61.905 65.000 12.00 3.85 31.50 3.77
2784 2959 1.142688 AGGCCTGTCAACCCCAAGAT 61.143 55.000 3.11 0.00 0.00 2.40
3082 3268 9.770097 CATATGTATGTCACACTTAAGGATTCT 57.230 33.333 7.53 0.00 40.86 2.40
3185 3372 6.680810 TGCTATGTTTATATGCATTGCTTCC 58.319 36.000 3.54 0.00 41.76 3.46
3290 3508 9.243105 ACAAGCTTCATATGTTACATACCTTTT 57.757 29.630 7.26 0.00 0.00 2.27
3361 3579 7.471721 TGTCATAATTTGGTTTAAGCAGATCG 58.528 34.615 0.80 0.00 0.00 3.69
3430 4037 5.003160 TGGTCAATTTCTGGACACAGTATG 58.997 41.667 0.00 0.00 45.14 2.39
3433 4040 5.352569 GTCAATTTCTGGACACAGTATGGAG 59.647 44.000 0.00 0.00 45.14 3.86
3567 4174 0.686769 ATGTACTCCCTCCGTCCCAC 60.687 60.000 0.00 0.00 0.00 4.61
3570 4177 0.613853 TACTCCCTCCGTCCCACAAG 60.614 60.000 0.00 0.00 0.00 3.16
3881 4497 3.997021 CGAACATCCTAGCTTTGTCAAGT 59.003 43.478 0.00 0.00 31.86 3.16
3998 4614 8.177013 CGATCATTTCTTATGAACAACATGTGA 58.823 33.333 0.00 0.00 39.77 3.58
4295 5562 6.938507 TGCTTCCTCTGCATTTGAATTTTAT 58.061 32.000 0.00 0.00 35.31 1.40
4410 5677 9.276590 CACAACTATGATGCAAAATATCTAGGA 57.723 33.333 0.00 0.00 0.00 2.94
4460 5727 5.505173 AGAGGTTTTGCGATTAATCATGG 57.495 39.130 15.57 0.73 0.00 3.66
4528 5795 5.660460 CAAAGTTTAAGGCAAGTGTTTCCT 58.340 37.500 0.00 0.00 0.00 3.36
4534 5801 7.451566 AGTTTAAGGCAAGTGTTTCCTGATAAT 59.548 33.333 0.00 0.00 0.00 1.28
4590 5857 2.223537 TGACAGGCACTACATATGCG 57.776 50.000 1.58 0.00 44.37 4.73
4592 5859 0.532862 ACAGGCACTACATATGCGCC 60.533 55.000 4.18 14.89 44.37 6.53
4631 5908 1.913778 TGTTCCATGCATGCTCTGTT 58.086 45.000 21.69 0.00 0.00 3.16
4632 5909 2.241160 TGTTCCATGCATGCTCTGTTT 58.759 42.857 21.69 0.00 0.00 2.83
4753 6030 1.133167 TGGTCTCCTGTGTCTGGAAGA 60.133 52.381 0.00 0.00 43.69 2.87
4812 6089 2.030805 GTGTTGATTCTGCACTTGGGAC 60.031 50.000 0.00 0.00 0.00 4.46
4816 6093 2.886523 TGATTCTGCACTTGGGACTTTG 59.113 45.455 0.00 0.00 0.00 2.77
4831 6108 8.746052 TTGGGACTTTGTTATACATGGATAAG 57.254 34.615 10.81 3.72 0.00 1.73
4927 6204 1.163554 CTGAAGCTGGCAAGGAGAAC 58.836 55.000 0.00 0.00 0.00 3.01
4963 6482 5.750067 GTCAAATTTCATTGTCTGCACTTGT 59.250 36.000 0.00 0.00 0.00 3.16
4964 6483 6.917477 GTCAAATTTCATTGTCTGCACTTGTA 59.083 34.615 0.00 0.00 0.00 2.41
5011 6542 9.731819 CTTAACCATTGAATCTTCTGAATCATG 57.268 33.333 0.00 0.00 32.77 3.07
5083 6614 2.476199 AGCTGGCAAGGAGAAGATACT 58.524 47.619 0.00 0.00 0.00 2.12
5115 6646 8.199449 AGTCAAATTTCATTGTGTTGATTCTGT 58.801 29.630 0.00 0.00 31.38 3.41
5125 6656 7.566760 TTGTGTTGATTCTGTACTTGTGAAT 57.433 32.000 0.00 0.00 33.69 2.57
5128 6659 9.114952 TGTGTTGATTCTGTACTTGTGAATTTA 57.885 29.630 0.00 0.00 31.49 1.40
5169 6701 9.512435 GTTAACCATTGAATCTTCTGAATCATG 57.488 33.333 0.00 0.00 32.77 3.07
5170 6702 6.145338 ACCATTGAATCTTCTGAATCATGC 57.855 37.500 0.00 0.00 32.77 4.06
5189 6721 3.318886 TGCTTTGTGTTATGCAATGCAG 58.681 40.909 14.98 0.00 45.51 4.41
5205 6737 5.737063 GCAATGCAGAAGAAGAAAGTTCCAA 60.737 40.000 0.00 0.00 0.00 3.53
5226 6758 5.105877 CCAATGATGTCAAATCTGAAGCTGT 60.106 40.000 0.00 0.00 31.88 4.40
5277 6809 4.754372 TCATTGTGTTGATTCTGCACTC 57.246 40.909 10.73 0.00 34.52 3.51
5283 6815 3.002246 GTGTTGATTCTGCACTCGTGAAA 59.998 43.478 0.39 0.00 0.00 2.69
5286 6818 5.215160 GTTGATTCTGCACTCGTGAAATTT 58.785 37.500 0.39 0.00 0.00 1.82
5287 6819 4.786507 TGATTCTGCACTCGTGAAATTTG 58.213 39.130 0.00 0.00 0.00 2.32
5386 6921 6.038382 CCATTGATGTCAAATCTGAGGAGAAG 59.962 42.308 0.00 0.00 39.55 2.85
5463 6998 4.341806 TGGCATCAAATTTTCAGACACAGT 59.658 37.500 0.00 0.00 0.00 3.55
5709 7244 4.379243 ACGCACTCCTTCCCGCAG 62.379 66.667 0.00 0.00 0.00 5.18
5776 7314 2.189594 TGAATGTGGACTTCCTGCTG 57.810 50.000 0.00 0.00 36.82 4.41
5871 7427 1.226018 CCGTCGCGAAAATCAAGGC 60.226 57.895 12.06 0.00 0.00 4.35
5934 7492 1.126488 TGACATGGAGATGGAGGAGC 58.874 55.000 0.00 0.00 33.39 4.70
6065 7624 1.537348 GCGACATGGCCGTTCAGTATA 60.537 52.381 0.00 0.00 0.00 1.47
6101 7698 1.926510 GCATTTTGGCGGCAGTATTTC 59.073 47.619 12.87 0.00 0.00 2.17
6102 7699 2.673610 GCATTTTGGCGGCAGTATTTCA 60.674 45.455 12.87 0.00 0.00 2.69
6110 7729 3.993736 GGCGGCAGTATTTCATTTTTGTT 59.006 39.130 3.07 0.00 0.00 2.83
6236 7937 2.192263 GACCTATCTCCATCCCATCCC 58.808 57.143 0.00 0.00 0.00 3.85
6237 7938 1.513991 ACCTATCTCCATCCCATCCCA 59.486 52.381 0.00 0.00 0.00 4.37
6238 7939 2.116898 ACCTATCTCCATCCCATCCCAT 59.883 50.000 0.00 0.00 0.00 4.00
6239 7940 2.776536 CCTATCTCCATCCCATCCCATC 59.223 54.545 0.00 0.00 0.00 3.51
6240 7941 1.678735 ATCTCCATCCCATCCCATCC 58.321 55.000 0.00 0.00 0.00 3.51
6286 7996 3.198409 ACTGTGACAGTGCTGAAATGA 57.802 42.857 18.72 0.00 43.63 2.57
6287 7997 3.544684 ACTGTGACAGTGCTGAAATGAA 58.455 40.909 18.72 0.00 43.63 2.57
6290 8000 5.068198 ACTGTGACAGTGCTGAAATGAAAAT 59.932 36.000 18.72 0.00 43.63 1.82
6292 8002 4.149396 GTGACAGTGCTGAAATGAAAATGC 59.851 41.667 6.17 0.00 0.00 3.56
6362 8080 0.596082 TTTCCCTGCGTTTTGCTAGC 59.404 50.000 8.10 8.10 46.63 3.42
6511 8233 1.639722 TCCAAGACGATGGAGGTTCA 58.360 50.000 5.46 0.00 44.52 3.18
6512 8234 1.974957 TCCAAGACGATGGAGGTTCAA 59.025 47.619 5.46 0.00 44.52 2.69
6513 8235 2.028112 TCCAAGACGATGGAGGTTCAAG 60.028 50.000 5.46 0.00 44.52 3.02
6514 8236 2.028112 CCAAGACGATGGAGGTTCAAGA 60.028 50.000 0.00 0.00 43.54 3.02
6517 8239 0.905357 ACGATGGAGGTTCAAGAGGG 59.095 55.000 0.00 0.00 0.00 4.30
6547 9709 7.731882 TTAGGAGAGAACTACATCATCTACG 57.268 40.000 0.00 0.00 0.00 3.51
6574 9736 4.038271 AGCCAACTGAGGAATGATTTCA 57.962 40.909 0.00 0.00 33.23 2.69
6575 9737 4.607239 AGCCAACTGAGGAATGATTTCAT 58.393 39.130 0.00 0.00 38.41 2.57
6610 9772 2.343758 GAGGCTGCAGGACGACAA 59.656 61.111 17.12 0.00 0.00 3.18
6616 9778 0.668706 CTGCAGGACGACAACTCCAG 60.669 60.000 5.57 0.00 0.00 3.86
6617 9779 1.374758 GCAGGACGACAACTCCAGG 60.375 63.158 0.00 0.00 0.00 4.45
6618 9780 1.374758 CAGGACGACAACTCCAGGC 60.375 63.158 0.00 0.00 0.00 4.85
6619 9781 2.047179 GGACGACAACTCCAGGCC 60.047 66.667 0.00 0.00 0.00 5.19
6620 9782 2.741092 GACGACAACTCCAGGCCA 59.259 61.111 5.01 0.00 0.00 5.36
6621 9783 1.374758 GACGACAACTCCAGGCCAG 60.375 63.158 5.01 0.00 0.00 4.85
6669 9839 3.388350 AGGTACATTCGATTCTCTTCCCC 59.612 47.826 0.00 0.00 0.00 4.81
6696 9866 1.133790 GATCCAGCCAGTTGCATGTTC 59.866 52.381 0.00 0.00 44.83 3.18
6706 9876 2.147958 GTTGCATGTTCTAACCGTGGA 58.852 47.619 0.00 0.00 0.00 4.02
6707 9877 2.550606 GTTGCATGTTCTAACCGTGGAA 59.449 45.455 0.00 0.00 0.00 3.53
6719 9889 8.938906 GTTCTAACCGTGGAAAAATACTGATTA 58.061 33.333 0.00 0.00 0.00 1.75
6736 9906 2.063015 TTACTGTGGGTGGGTGCCAG 62.063 60.000 0.00 0.00 32.34 4.85
6737 9907 4.666253 CTGTGGGTGGGTGCCAGG 62.666 72.222 0.00 0.00 32.34 4.45
6739 9909 4.351054 GTGGGTGGGTGCCAGGAG 62.351 72.222 0.00 0.00 32.34 3.69
6743 9913 3.721706 GTGGGTGCCAGGAGGGAG 61.722 72.222 0.00 0.00 40.01 4.30
6747 9917 2.759795 GTGCCAGGAGGGAGCTTT 59.240 61.111 0.00 0.00 40.01 3.51
6748 9918 1.075659 GTGCCAGGAGGGAGCTTTT 59.924 57.895 0.00 0.00 40.01 2.27
6749 9919 0.540597 GTGCCAGGAGGGAGCTTTTT 60.541 55.000 0.00 0.00 40.01 1.94
6775 9945 8.990163 TTTTGAAATGAAAGGTAGTAAGGTCT 57.010 30.769 0.00 0.00 0.00 3.85
6777 9947 9.498176 TTTGAAATGAAAGGTAGTAAGGTCTAC 57.502 33.333 0.00 0.00 39.40 2.59
6802 9972 9.474313 ACCTTATATATTTCAAAACAGGCAAGA 57.526 29.630 0.00 0.00 0.00 3.02
6805 9975 9.801873 TTATATATTTCAAAACAGGCAAGAAGC 57.198 29.630 0.00 0.00 44.65 3.86
6814 9984 2.747855 GCAAGAAGCCTGGGACCG 60.748 66.667 0.00 0.00 37.23 4.79
6815 9985 2.045926 CAAGAAGCCTGGGACCGG 60.046 66.667 0.00 0.00 0.00 5.28
6816 9986 2.203938 AAGAAGCCTGGGACCGGA 60.204 61.111 9.46 0.00 0.00 5.14
6817 9987 2.294078 AAGAAGCCTGGGACCGGAG 61.294 63.158 9.46 0.00 0.00 4.63
6831 10001 3.588277 CGGAGGGGTCGATTACATG 57.412 57.895 0.00 0.00 0.00 3.21
6832 10002 1.037493 CGGAGGGGTCGATTACATGA 58.963 55.000 0.00 0.00 0.00 3.07
6833 10003 1.411246 CGGAGGGGTCGATTACATGAA 59.589 52.381 0.00 0.00 0.00 2.57
6834 10004 2.545952 CGGAGGGGTCGATTACATGAAG 60.546 54.545 0.00 0.00 0.00 3.02
6835 10005 2.484889 GAGGGGTCGATTACATGAAGC 58.515 52.381 0.00 0.00 0.00 3.86
6836 10006 2.103263 GAGGGGTCGATTACATGAAGCT 59.897 50.000 0.00 0.00 0.00 3.74
6837 10007 2.505819 AGGGGTCGATTACATGAAGCTT 59.494 45.455 0.00 0.00 0.00 3.74
6838 10008 3.709653 AGGGGTCGATTACATGAAGCTTA 59.290 43.478 0.00 0.00 0.00 3.09
6839 10009 4.348168 AGGGGTCGATTACATGAAGCTTAT 59.652 41.667 0.00 0.00 0.00 1.73
6840 10010 4.691216 GGGGTCGATTACATGAAGCTTATC 59.309 45.833 0.00 0.00 0.00 1.75
6841 10011 5.511545 GGGGTCGATTACATGAAGCTTATCT 60.512 44.000 0.00 0.00 0.00 1.98
6842 10012 5.992217 GGGTCGATTACATGAAGCTTATCTT 59.008 40.000 0.00 0.00 37.83 2.40
6843 10013 6.483640 GGGTCGATTACATGAAGCTTATCTTT 59.516 38.462 0.00 0.00 34.56 2.52
6844 10014 7.656137 GGGTCGATTACATGAAGCTTATCTTTA 59.344 37.037 0.00 0.00 34.56 1.85
6845 10015 8.704234 GGTCGATTACATGAAGCTTATCTTTAG 58.296 37.037 0.00 0.00 34.56 1.85
6846 10016 8.217778 GTCGATTACATGAAGCTTATCTTTAGC 58.782 37.037 0.00 0.00 38.93 3.09
6847 10017 7.926018 TCGATTACATGAAGCTTATCTTTAGCA 59.074 33.333 0.00 0.00 41.11 3.49
6848 10018 8.006590 CGATTACATGAAGCTTATCTTTAGCAC 58.993 37.037 0.00 0.00 41.11 4.40
6849 10019 7.553881 TTACATGAAGCTTATCTTTAGCACC 57.446 36.000 0.00 0.00 41.11 5.01
6850 10020 5.500234 ACATGAAGCTTATCTTTAGCACCA 58.500 37.500 0.00 0.00 41.11 4.17
6851 10021 5.945784 ACATGAAGCTTATCTTTAGCACCAA 59.054 36.000 0.00 0.00 41.11 3.67
6852 10022 6.094603 ACATGAAGCTTATCTTTAGCACCAAG 59.905 38.462 0.00 0.00 41.11 3.61
6853 10023 4.943705 TGAAGCTTATCTTTAGCACCAAGG 59.056 41.667 0.00 0.00 41.11 3.61
6854 10024 4.576330 AGCTTATCTTTAGCACCAAGGT 57.424 40.909 0.00 0.00 41.11 3.50
6855 10025 5.163713 GAAGCTTATCTTTAGCACCAAGGTG 60.164 44.000 14.82 14.82 41.00 4.00
6879 10049 3.034569 GCAATAAGCCGCTGGTTTG 57.965 52.632 0.00 0.00 37.23 2.93
6880 10050 0.243636 GCAATAAGCCGCTGGTTTGT 59.756 50.000 0.00 0.00 37.23 2.83
6881 10051 1.470890 GCAATAAGCCGCTGGTTTGTA 59.529 47.619 0.00 0.00 37.23 2.41
6882 10052 2.477863 GCAATAAGCCGCTGGTTTGTAG 60.478 50.000 0.00 0.00 37.23 2.74
6883 10053 3.006940 CAATAAGCCGCTGGTTTGTAGA 58.993 45.455 0.00 0.00 33.46 2.59
6884 10054 2.380084 TAAGCCGCTGGTTTGTAGAG 57.620 50.000 0.00 0.00 33.46 2.43
6885 10055 0.685097 AAGCCGCTGGTTTGTAGAGA 59.315 50.000 0.00 0.00 0.00 3.10
6886 10056 0.685097 AGCCGCTGGTTTGTAGAGAA 59.315 50.000 0.00 0.00 0.00 2.87
6887 10057 1.071699 AGCCGCTGGTTTGTAGAGAAA 59.928 47.619 0.00 0.00 0.00 2.52
6888 10058 1.197036 GCCGCTGGTTTGTAGAGAAAC 59.803 52.381 0.00 0.00 35.45 2.78
6889 10059 2.489971 CCGCTGGTTTGTAGAGAAACA 58.510 47.619 4.86 0.00 37.53 2.83
6890 10060 2.875933 CCGCTGGTTTGTAGAGAAACAA 59.124 45.455 4.86 0.00 37.53 2.83
6891 10061 3.058914 CCGCTGGTTTGTAGAGAAACAAG 60.059 47.826 2.95 2.95 40.29 3.16
6892 10062 3.560068 CGCTGGTTTGTAGAGAAACAAGT 59.440 43.478 8.12 0.00 38.61 3.16
6893 10063 4.748102 CGCTGGTTTGTAGAGAAACAAGTA 59.252 41.667 8.12 0.00 38.61 2.24
6894 10064 5.235616 CGCTGGTTTGTAGAGAAACAAGTAA 59.764 40.000 8.12 0.00 38.61 2.24
6895 10065 6.238266 CGCTGGTTTGTAGAGAAACAAGTAAA 60.238 38.462 8.12 0.00 38.61 2.01
6896 10066 7.477494 GCTGGTTTGTAGAGAAACAAGTAAAA 58.523 34.615 8.12 0.00 38.61 1.52
6897 10067 7.971722 GCTGGTTTGTAGAGAAACAAGTAAAAA 59.028 33.333 8.12 0.00 38.61 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 54 8.352201 CAATCAAACCTATGAGAAACTTGACAA 58.648 33.333 0.00 0.00 31.76 3.18
68 71 6.756542 GGGCATATAACTTTCACAATCAAACC 59.243 38.462 0.00 0.00 0.00 3.27
87 90 5.368145 GAGATGTCAACTTACATGGGCATA 58.632 41.667 0.00 0.00 40.17 3.14
105 108 3.060272 GCATCGGTTGACATTACGAGATG 60.060 47.826 0.00 8.69 38.85 2.90
106 109 3.123804 GCATCGGTTGACATTACGAGAT 58.876 45.455 0.00 0.00 38.85 2.75
115 118 1.277842 AGTATGGTGCATCGGTTGACA 59.722 47.619 0.00 0.00 0.00 3.58
123 126 0.471617 AGAGGGCAGTATGGTGCATC 59.528 55.000 0.00 0.00 45.93 3.91
150 153 0.958822 ATGGTTTTCTCGGTGTTGGC 59.041 50.000 0.00 0.00 0.00 4.52
157 160 1.399727 GCAACGACATGGTTTTCTCGG 60.400 52.381 0.00 0.00 0.00 4.63
159 162 2.918131 GCAGCAACGACATGGTTTTCTC 60.918 50.000 0.00 0.00 0.00 2.87
175 178 1.004560 CAACGGAAGAGAGGCAGCA 60.005 57.895 0.00 0.00 0.00 4.41
188 191 4.806247 GTGATGAGGAAGAATAGACAACGG 59.194 45.833 0.00 0.00 0.00 4.44
208 211 0.596082 TCGTCATCTCGCAACAGTGA 59.404 50.000 0.00 0.00 0.00 3.41
243 246 4.949238 CAGTGATAAACCCATGTCATTCCA 59.051 41.667 0.00 0.00 0.00 3.53
254 257 2.945668 GCATGGTCTCAGTGATAAACCC 59.054 50.000 13.87 3.04 0.00 4.11
276 279 6.710744 CACATAACTATTGGTTAGGATGACCC 59.289 42.308 10.91 0.00 42.63 4.46
322 325 0.107017 ATATGCACTGTGAGTGGGGC 60.107 55.000 12.86 0.00 46.01 5.80
379 383 9.478019 CATGACGTTATTTTCTTCAACTCATAC 57.522 33.333 0.00 0.00 0.00 2.39
423 442 6.296365 TCTGACGTATATGAACTACTTCCG 57.704 41.667 0.00 0.00 0.00 4.30
471 490 2.428890 GGGTTCTCGTGATCATCTCAGT 59.571 50.000 0.00 0.00 33.51 3.41
472 491 2.542618 CGGGTTCTCGTGATCATCTCAG 60.543 54.545 0.00 0.00 33.51 3.35
485 504 4.743644 CGTAGAATTTATGACCGGGTTCTC 59.256 45.833 6.32 0.00 0.00 2.87
506 525 4.096003 CCAGAACCCGGCCATCGT 62.096 66.667 2.24 0.00 37.11 3.73
519 538 6.463614 CCAATTTTGTATTGGGTTTCACCAGA 60.464 38.462 8.35 0.00 43.58 3.86
535 554 4.856487 CGACATATGCGAAACCAATTTTGT 59.144 37.500 12.34 0.00 32.42 2.83
549 568 7.421530 AAAATGGTATAGTCACGACATATGC 57.578 36.000 1.58 0.00 0.00 3.14
576 597 9.923786 GTTCGCAAAACACCTTTATTTTAAATT 57.076 25.926 0.00 0.00 0.00 1.82
592 613 0.383949 TCAAGGCAGGTTCGCAAAAC 59.616 50.000 0.00 0.00 0.00 2.43
597 618 2.357034 TCGTCAAGGCAGGTTCGC 60.357 61.111 0.00 0.00 0.00 4.70
689 712 4.220602 AGTGCATTTACCATTTTCCCTGTC 59.779 41.667 0.00 0.00 0.00 3.51
748 771 3.958798 TCGGTTGATTGGTTTTTACCCAA 59.041 39.130 0.00 0.00 45.55 4.12
750 773 3.318557 TGTCGGTTGATTGGTTTTTACCC 59.681 43.478 0.00 0.00 0.00 3.69
795 818 3.814005 AACAGATTACCGTTCGGCTAT 57.186 42.857 11.32 4.91 0.00 2.97
833 856 5.531287 GGCTGGGGTAAATAAATAGTGTGAG 59.469 44.000 0.00 0.00 0.00 3.51
834 857 5.442391 GGCTGGGGTAAATAAATAGTGTGA 58.558 41.667 0.00 0.00 0.00 3.58
839 862 5.061721 ACTGGGCTGGGGTAAATAAATAG 57.938 43.478 0.00 0.00 0.00 1.73
866 889 4.806339 AGGAAGGCGGGGGAGGAG 62.806 72.222 0.00 0.00 0.00 3.69
876 900 2.285743 AGGAGGGTGGAGGAAGGC 60.286 66.667 0.00 0.00 0.00 4.35
960 994 1.961277 GCACGTGGAGTCCTTGTGG 60.961 63.158 25.78 13.86 32.73 4.17
964 998 4.681978 GGCGCACGTGGAGTCCTT 62.682 66.667 18.88 0.00 0.00 3.36
1003 1037 1.950216 CTTGAGGGACTGATCGATCGA 59.050 52.381 21.86 21.86 41.55 3.59
1046 1080 0.881118 AACAGCCGCACGAATCAAAT 59.119 45.000 0.00 0.00 0.00 2.32
1101 1135 8.877779 CGACCGCTAACTACATAATACTACTAT 58.122 37.037 0.00 0.00 0.00 2.12
1102 1136 7.331934 CCGACCGCTAACTACATAATACTACTA 59.668 40.741 0.00 0.00 0.00 1.82
1103 1137 6.148480 CCGACCGCTAACTACATAATACTACT 59.852 42.308 0.00 0.00 0.00 2.57
1104 1138 6.310197 CCGACCGCTAACTACATAATACTAC 58.690 44.000 0.00 0.00 0.00 2.73
1105 1139 5.412594 CCCGACCGCTAACTACATAATACTA 59.587 44.000 0.00 0.00 0.00 1.82
1106 1140 4.217118 CCCGACCGCTAACTACATAATACT 59.783 45.833 0.00 0.00 0.00 2.12
1107 1141 4.479619 CCCGACCGCTAACTACATAATAC 58.520 47.826 0.00 0.00 0.00 1.89
1108 1142 3.507233 CCCCGACCGCTAACTACATAATA 59.493 47.826 0.00 0.00 0.00 0.98
1128 1162 1.550524 GCCCAGAAATCAAGAAACCCC 59.449 52.381 0.00 0.00 0.00 4.95
1145 1179 2.162408 CCAAAGATTCAAGAGAACGCCC 59.838 50.000 0.00 0.00 36.39 6.13
1222 1263 4.626042 AGCTATCACAGGATGACGAAATC 58.374 43.478 0.00 0.00 41.24 2.17
1467 1533 1.077645 GCTCGCTCTTGCTGACAGAG 61.078 60.000 6.65 0.00 36.97 3.35
1475 1541 1.681945 CTTGTCTCGCTCGCTCTTGC 61.682 60.000 0.00 0.00 0.00 4.01
1491 1557 2.704464 TCTGCTCCATGACCATCTTG 57.296 50.000 0.00 0.00 0.00 3.02
1558 1624 2.035066 GCACAACATCAGCTTCCTTGTT 59.965 45.455 0.00 0.00 32.76 2.83
1644 1710 4.933330 TGGCTGATATGAAAGACTACGTC 58.067 43.478 0.00 0.00 0.00 4.34
1645 1711 5.537300 ATGGCTGATATGAAAGACTACGT 57.463 39.130 0.00 0.00 0.00 3.57
1659 1726 6.105397 ACAAAAACTGATGAAATGGCTGAT 57.895 33.333 0.00 0.00 0.00 2.90
1660 1727 5.534207 ACAAAAACTGATGAAATGGCTGA 57.466 34.783 0.00 0.00 0.00 4.26
1672 1739 5.123186 TCGAGCTTCAAGAAACAAAAACTGA 59.877 36.000 0.00 0.00 0.00 3.41
1673 1740 5.331902 TCGAGCTTCAAGAAACAAAAACTG 58.668 37.500 0.00 0.00 0.00 3.16
1674 1741 5.560966 TCGAGCTTCAAGAAACAAAAACT 57.439 34.783 0.00 0.00 0.00 2.66
1675 1742 5.399596 GGATCGAGCTTCAAGAAACAAAAAC 59.600 40.000 0.00 0.00 0.00 2.43
1676 1743 5.299279 AGGATCGAGCTTCAAGAAACAAAAA 59.701 36.000 0.00 0.00 0.00 1.94
1677 1744 4.821805 AGGATCGAGCTTCAAGAAACAAAA 59.178 37.500 0.00 0.00 0.00 2.44
1681 1748 2.675348 CCAGGATCGAGCTTCAAGAAAC 59.325 50.000 0.00 0.00 0.00 2.78
1685 1752 2.275318 GAACCAGGATCGAGCTTCAAG 58.725 52.381 0.00 0.00 0.00 3.02
1686 1753 1.623311 TGAACCAGGATCGAGCTTCAA 59.377 47.619 0.00 0.00 0.00 2.69
1699 1766 3.857052 TCCGCAATAGTAAGTGAACCAG 58.143 45.455 0.00 0.00 0.00 4.00
1700 1767 3.857052 CTCCGCAATAGTAAGTGAACCA 58.143 45.455 0.00 0.00 0.00 3.67
1702 1769 3.307242 CAGCTCCGCAATAGTAAGTGAAC 59.693 47.826 0.00 0.00 0.00 3.18
1705 1772 1.594862 GCAGCTCCGCAATAGTAAGTG 59.405 52.381 0.00 0.00 0.00 3.16
1706 1773 1.473434 GGCAGCTCCGCAATAGTAAGT 60.473 52.381 0.00 0.00 0.00 2.24
1707 1774 1.202580 AGGCAGCTCCGCAATAGTAAG 60.203 52.381 0.00 0.00 40.77 2.34
1710 1777 1.144936 GAGGCAGCTCCGCAATAGT 59.855 57.895 0.00 0.00 40.77 2.12
1711 1778 0.879400 CAGAGGCAGCTCCGCAATAG 60.879 60.000 8.23 0.00 40.77 1.73
1712 1779 1.144716 CAGAGGCAGCTCCGCAATA 59.855 57.895 8.23 0.00 40.77 1.90
1713 1780 1.980784 ATCAGAGGCAGCTCCGCAAT 61.981 55.000 8.23 0.58 40.77 3.56
1714 1781 1.329913 TATCAGAGGCAGCTCCGCAA 61.330 55.000 8.23 0.00 40.77 4.85
1717 1784 1.617850 AGATTATCAGAGGCAGCTCCG 59.382 52.381 0.00 0.00 40.77 4.63
1892 1996 2.033299 TCAAGCTCACGCAAAAGGAAAG 59.967 45.455 0.00 0.00 39.10 2.62
1900 2004 1.227645 AGCAGTCAAGCTCACGCAA 60.228 52.632 12.03 0.00 42.18 4.85
1904 2008 1.146637 CAGTCAGCAGTCAAGCTCAC 58.853 55.000 0.00 0.00 44.54 3.51
1906 2010 2.160946 GCAGTCAGCAGTCAAGCTC 58.839 57.895 0.00 0.00 44.54 4.09
1958 2063 3.409026 AGTGTGATCAAGGTTCAGGAC 57.591 47.619 0.00 0.00 0.00 3.85
1983 2088 2.767505 ACTTTAACAGAGGCAGTTCCG 58.232 47.619 0.00 0.00 40.77 4.30
2039 2179 8.217131 TCACCATGATAATGAAACATGAGAAG 57.783 34.615 0.00 0.00 42.41 2.85
2064 2204 4.034742 GCATACGGTCACGAATATTGGTTT 59.965 41.667 0.00 0.00 44.60 3.27
2073 2223 2.665649 AGAATGCATACGGTCACGAA 57.334 45.000 0.00 0.00 44.60 3.85
2076 2226 6.645003 TGATAACATAGAATGCATACGGTCAC 59.355 38.462 0.00 0.00 0.00 3.67
2219 2375 4.148348 GTCATCTGTATCGTCGCCATTAAC 59.852 45.833 0.00 0.00 0.00 2.01
2225 2381 0.306840 TCGTCATCTGTATCGTCGCC 59.693 55.000 0.00 0.00 0.00 5.54
2354 2526 8.017418 AGATGATAGAGAAAAGAAACGAGGAT 57.983 34.615 0.00 0.00 0.00 3.24
2355 2527 7.122799 TGAGATGATAGAGAAAAGAAACGAGGA 59.877 37.037 0.00 0.00 0.00 3.71
2356 2528 7.221838 GTGAGATGATAGAGAAAAGAAACGAGG 59.778 40.741 0.00 0.00 0.00 4.63
2364 2539 9.985318 GTGAAATTGTGAGATGATAGAGAAAAG 57.015 33.333 0.00 0.00 0.00 2.27
2370 2545 5.128663 TCCCGTGAAATTGTGAGATGATAGA 59.871 40.000 0.00 0.00 0.00 1.98
2373 2548 4.220693 TCCCGTGAAATTGTGAGATGAT 57.779 40.909 0.00 0.00 0.00 2.45
2393 2568 7.547370 AGATCACTAAGCTGAACACTTGTAATC 59.453 37.037 0.00 0.00 0.00 1.75
2413 2588 9.660180 ATCCAACTCTTAGAAAAGTTAGATCAC 57.340 33.333 0.00 0.00 31.12 3.06
2534 2709 6.237969 GCTGACTTATCTTACTTTAGCAGTGC 60.238 42.308 7.13 7.13 35.97 4.40
2575 2750 0.652071 GATCACATCGCGTGCATGAA 59.348 50.000 10.93 0.00 45.92 2.57
2578 2753 1.302366 AATGATCACATCGCGTGCAT 58.698 45.000 5.77 0.00 45.92 3.96
2589 2764 7.490962 TGTAATTTCCCACGATAATGATCAC 57.509 36.000 0.00 0.00 31.78 3.06
2595 2770 6.827727 ACTAGCTGTAATTTCCCACGATAAT 58.172 36.000 0.00 0.00 0.00 1.28
2720 2895 4.956085 ACCAGCCAAAATCTTTAAACCAC 58.044 39.130 0.00 0.00 0.00 4.16
2777 2952 2.022195 CTGCTCCATGTCAATCTTGGG 58.978 52.381 0.00 0.00 40.46 4.12
2784 2959 3.490439 TCAACTTCTGCTCCATGTCAA 57.510 42.857 0.00 0.00 0.00 3.18
2826 3001 3.793144 CGCCGCTCTCAACCAAGC 61.793 66.667 0.00 0.00 35.13 4.01
3361 3579 7.630987 CGAATCGTTAAGTGTGACAAACATATC 59.369 37.037 0.00 0.00 41.97 1.63
3567 4174 8.017373 TCAAGCTTGAAAAACGATCTTATCTTG 58.983 33.333 26.61 0.00 33.55 3.02
3881 4497 8.729805 TGAACAACATGTGAATGTAGCATATA 57.270 30.769 0.00 0.00 33.81 0.86
3998 4614 4.310022 TCGATATTTGGGTTCTTGGGTT 57.690 40.909 0.00 0.00 0.00 4.11
4295 5562 1.975680 GTAGACCCTGGGAGACAAACA 59.024 52.381 22.23 0.00 0.00 2.83
4410 5677 1.884067 GCACTAAGTCCTTGCTTGGCT 60.884 52.381 0.00 0.00 33.26 4.75
4460 5727 4.124851 ACAACATCTCCGACCTTGATAC 57.875 45.455 0.00 0.00 0.00 2.24
4590 5857 6.215845 ACAATTCAAGAAATGTGTAACTGGC 58.784 36.000 2.90 0.00 33.55 4.85
4592 5859 7.920151 TGGAACAATTCAAGAAATGTGTAACTG 59.080 33.333 4.42 0.00 34.90 3.16
4632 5909 9.474313 AGGAGTTTTTAATATTGGATAAGTGCA 57.526 29.630 0.00 0.00 0.00 4.57
4653 5930 3.069729 AGCGTACAGAAAACAAGAGGAGT 59.930 43.478 0.00 0.00 0.00 3.85
4654 5931 3.654414 AGCGTACAGAAAACAAGAGGAG 58.346 45.455 0.00 0.00 0.00 3.69
4753 6030 2.366916 CTCGGTATCTTCTCCTTGCCAT 59.633 50.000 0.00 0.00 0.00 4.40
4839 6116 8.853126 ACACAAGAAATGATTCAGAAGATTCAA 58.147 29.630 0.00 0.00 37.59 2.69
4859 6136 7.252708 TCTTCTGCATTGCATAATAACACAAG 58.747 34.615 12.53 4.07 38.13 3.16
4869 6146 6.349611 GGAACTTTCTTCTTCTGCATTGCATA 60.350 38.462 12.53 1.58 38.13 3.14
4870 6147 5.464030 AACTTTCTTCTTCTGCATTGCAT 57.536 34.783 12.53 0.00 38.13 3.96
4871 6148 4.261741 GGAACTTTCTTCTTCTGCATTGCA 60.262 41.667 11.50 11.50 36.92 4.08
4927 6204 6.668541 ATGAAATTTGACTCACTCGGTATG 57.331 37.500 0.00 0.00 0.00 2.39
4986 6505 9.246670 ACATGATTCAGAAGATTCAATGGTTAA 57.753 29.630 0.00 0.00 37.59 2.01
4993 6512 8.415553 ACACAAAACATGATTCAGAAGATTCAA 58.584 29.630 0.00 0.00 37.59 2.69
5011 6542 5.691305 TCTTCTGCATTGCATAACACAAAAC 59.309 36.000 12.53 0.00 38.13 2.43
5083 6614 6.698008 ACACAATGAAATTTGACTCACTCA 57.302 33.333 0.00 0.00 31.22 3.41
5169 6701 3.577667 TCTGCATTGCATAACACAAAGC 58.422 40.909 12.53 0.00 40.98 3.51
5170 6702 5.463286 TCTTCTGCATTGCATAACACAAAG 58.537 37.500 12.53 7.58 38.13 2.77
5189 6721 7.206981 TGACATCATTGGAACTTTCTTCTTC 57.793 36.000 0.00 0.00 0.00 2.87
5205 6737 5.250982 TGACAGCTTCAGATTTGACATCAT 58.749 37.500 0.00 0.00 31.71 2.45
5226 6758 3.948473 CTCACTCGGTATCTTCTCCTTGA 59.052 47.826 0.00 0.00 0.00 3.02
5328 6863 7.552458 TCTTCTGCATCGCATAATAGAAAAA 57.448 32.000 0.00 0.00 38.13 1.94
5333 6868 6.775939 TTCTTCTTCTGCATCGCATAATAG 57.224 37.500 0.00 0.00 38.13 1.73
5335 6870 5.587844 ACTTTCTTCTTCTGCATCGCATAAT 59.412 36.000 0.00 0.00 38.13 1.28
5338 6873 3.341823 ACTTTCTTCTTCTGCATCGCAT 58.658 40.909 0.00 0.00 38.13 4.73
5342 6877 5.893897 ATGGAACTTTCTTCTTCTGCATC 57.106 39.130 0.00 0.00 0.00 3.91
5386 6921 1.583477 GCTCTGAGCAACCTTTGGC 59.417 57.895 24.02 0.00 41.89 4.52
5477 7012 2.880890 AGCTGCTGAAATCTTTCACGTT 59.119 40.909 0.00 0.00 41.88 3.99
5644 7179 4.410448 CGATGTCGATAGTCTCCATGATG 58.590 47.826 0.00 0.00 43.02 3.07
5709 7244 1.420138 TCTTCCAGACCACAAAGTCCC 59.580 52.381 0.00 0.00 37.49 4.46
5776 7314 0.847035 GGAGATCATCGACGCGTTTC 59.153 55.000 15.53 0.00 0.00 2.78
5857 7413 1.226018 GACCGCCTTGATTTTCGCG 60.226 57.895 0.00 0.00 44.08 5.87
5871 7427 0.525668 CTCGAAATCCTGGACGACCG 60.526 60.000 0.00 0.78 39.42 4.79
5947 7505 5.306160 TGCATCATCTCATCCACTATCTTCA 59.694 40.000 0.00 0.00 0.00 3.02
6065 7624 6.571150 GCCAAAATGCAGTTCTAATCTTCTGT 60.571 38.462 0.00 0.00 0.00 3.41
6086 7683 3.951775 AAAATGAAATACTGCCGCCAA 57.048 38.095 0.00 0.00 0.00 4.52
6101 7698 9.640974 CTCTCAAGTTGCATTTAAACAAAAATG 57.359 29.630 0.00 5.21 45.55 2.32
6102 7699 9.382275 ACTCTCAAGTTGCATTTAAACAAAAAT 57.618 25.926 0.00 0.00 28.74 1.82
6195 7895 1.073284 ACACCACTTGATGTGTACCCC 59.927 52.381 0.00 0.00 43.54 4.95
6240 7941 1.817941 CGCGGAATTACACAGGGGG 60.818 63.158 0.00 0.00 0.00 5.40
6309 8020 7.978414 TCAAATGCACTCAACAAATACTCAAAA 59.022 29.630 0.00 0.00 0.00 2.44
6362 8080 1.530441 GCTGCATGCACAATACTCGTG 60.530 52.381 18.46 3.92 42.31 4.35
6466 8188 2.536803 CCATTTTATTCATGCGTGCTGC 59.463 45.455 0.00 0.00 46.70 5.25
6467 8189 3.772932 ACCATTTTATTCATGCGTGCTG 58.227 40.909 0.00 0.00 0.00 4.41
6468 8190 5.125417 AGTTACCATTTTATTCATGCGTGCT 59.875 36.000 0.00 0.00 0.00 4.40
6469 8191 5.339990 AGTTACCATTTTATTCATGCGTGC 58.660 37.500 0.00 0.00 0.00 5.34
6470 8192 5.971202 GGAGTTACCATTTTATTCATGCGTG 59.029 40.000 0.00 0.00 38.79 5.34
6471 8193 5.650266 TGGAGTTACCATTTTATTCATGCGT 59.350 36.000 0.00 0.00 44.64 5.24
6472 8194 6.130298 TGGAGTTACCATTTTATTCATGCG 57.870 37.500 0.00 0.00 44.64 4.73
6499 8221 0.462759 GCCCTCTTGAACCTCCATCG 60.463 60.000 0.00 0.00 0.00 3.84
6500 8222 0.462759 CGCCCTCTTGAACCTCCATC 60.463 60.000 0.00 0.00 0.00 3.51
6501 8223 1.604378 CGCCCTCTTGAACCTCCAT 59.396 57.895 0.00 0.00 0.00 3.41
6502 8224 2.592993 CCGCCCTCTTGAACCTCCA 61.593 63.158 0.00 0.00 0.00 3.86
6503 8225 2.269241 CCGCCCTCTTGAACCTCC 59.731 66.667 0.00 0.00 0.00 4.30
6504 8226 1.627297 ATCCCGCCCTCTTGAACCTC 61.627 60.000 0.00 0.00 0.00 3.85
6505 8227 1.208165 AATCCCGCCCTCTTGAACCT 61.208 55.000 0.00 0.00 0.00 3.50
6506 8228 0.544697 TAATCCCGCCCTCTTGAACC 59.455 55.000 0.00 0.00 0.00 3.62
6507 8229 1.475213 CCTAATCCCGCCCTCTTGAAC 60.475 57.143 0.00 0.00 0.00 3.18
6508 8230 0.837272 CCTAATCCCGCCCTCTTGAA 59.163 55.000 0.00 0.00 0.00 2.69
6509 8231 0.031515 TCCTAATCCCGCCCTCTTGA 60.032 55.000 0.00 0.00 0.00 3.02
6510 8232 0.394565 CTCCTAATCCCGCCCTCTTG 59.605 60.000 0.00 0.00 0.00 3.02
6511 8233 0.264955 TCTCCTAATCCCGCCCTCTT 59.735 55.000 0.00 0.00 0.00 2.85
6512 8234 0.178947 CTCTCCTAATCCCGCCCTCT 60.179 60.000 0.00 0.00 0.00 3.69
6513 8235 0.178958 TCTCTCCTAATCCCGCCCTC 60.179 60.000 0.00 0.00 0.00 4.30
6514 8236 0.264955 TTCTCTCCTAATCCCGCCCT 59.735 55.000 0.00 0.00 0.00 5.19
6517 8239 2.957006 TGTAGTTCTCTCCTAATCCCGC 59.043 50.000 0.00 0.00 0.00 6.13
6573 9735 1.468565 CCGTTGCTCAGCCATGAAATG 60.469 52.381 0.00 0.00 46.21 2.32
6574 9736 0.813184 CCGTTGCTCAGCCATGAAAT 59.187 50.000 0.00 0.00 34.23 2.17
6575 9737 0.250684 TCCGTTGCTCAGCCATGAAA 60.251 50.000 0.00 0.00 34.23 2.69
6576 9738 0.674581 CTCCGTTGCTCAGCCATGAA 60.675 55.000 0.00 0.00 34.23 2.57
6610 9772 4.345286 AGGAGCCTGGCCTGGAGT 62.345 66.667 31.43 17.55 33.59 3.85
6616 9778 3.011517 TCTTGGAGGAGCCTGGCC 61.012 66.667 16.57 6.85 37.63 5.36
6617 9779 2.588989 CTCTTGGAGGAGCCTGGC 59.411 66.667 11.65 11.65 37.63 4.85
6636 9798 3.118775 TCGAATGTACCTCATGTCCTTGG 60.119 47.826 0.00 0.00 36.81 3.61
6669 9839 0.323178 AACTGGCTGGATCCAAGCAG 60.323 55.000 26.93 23.37 35.36 4.24
6696 9866 8.388103 CAGTAATCAGTATTTTTCCACGGTTAG 58.612 37.037 0.00 0.00 0.00 2.34
6706 9876 5.714806 CCCACCCACAGTAATCAGTATTTTT 59.285 40.000 0.00 0.00 0.00 1.94
6707 9877 5.222254 ACCCACCCACAGTAATCAGTATTTT 60.222 40.000 0.00 0.00 0.00 1.82
6719 9889 3.889692 CTGGCACCCACCCACAGT 61.890 66.667 0.00 0.00 0.00 3.55
6749 9919 9.416284 AGACCTTACTACCTTTCATTTCAAAAA 57.584 29.630 0.00 0.00 0.00 1.94
6750 9920 8.990163 AGACCTTACTACCTTTCATTTCAAAA 57.010 30.769 0.00 0.00 0.00 2.44
6751 9921 9.498176 GTAGACCTTACTACCTTTCATTTCAAA 57.502 33.333 0.00 0.00 37.39 2.69
6776 9946 9.474313 TCTTGCCTGTTTTGAAATATATAAGGT 57.526 29.630 0.00 0.00 0.00 3.50
6779 9949 9.801873 GCTTCTTGCCTGTTTTGAAATATATAA 57.198 29.630 0.00 0.00 35.15 0.98
6797 9967 2.747855 CGGTCCCAGGCTTCTTGC 60.748 66.667 0.00 0.00 41.94 4.01
6798 9968 2.045926 CCGGTCCCAGGCTTCTTG 60.046 66.667 0.00 0.00 0.00 3.02
6799 9969 2.203938 TCCGGTCCCAGGCTTCTT 60.204 61.111 0.00 0.00 0.00 2.52
6800 9970 2.685380 CTCCGGTCCCAGGCTTCT 60.685 66.667 0.00 0.00 0.00 2.85
6801 9971 3.787001 CCTCCGGTCCCAGGCTTC 61.787 72.222 0.00 0.00 0.00 3.86
6812 9982 0.033504 CATGTAATCGACCCCTCCGG 59.966 60.000 0.00 0.00 37.81 5.14
6813 9983 1.037493 TCATGTAATCGACCCCTCCG 58.963 55.000 0.00 0.00 0.00 4.63
6814 9984 2.807108 GCTTCATGTAATCGACCCCTCC 60.807 54.545 0.00 0.00 0.00 4.30
6815 9985 2.103263 AGCTTCATGTAATCGACCCCTC 59.897 50.000 0.00 0.00 0.00 4.30
6816 9986 2.119495 AGCTTCATGTAATCGACCCCT 58.881 47.619 0.00 0.00 0.00 4.79
6817 9987 2.622064 AGCTTCATGTAATCGACCCC 57.378 50.000 0.00 0.00 0.00 4.95
6818 9988 5.542779 AGATAAGCTTCATGTAATCGACCC 58.457 41.667 0.00 0.00 0.00 4.46
6819 9989 7.484035 AAAGATAAGCTTCATGTAATCGACC 57.516 36.000 0.00 0.00 35.24 4.79
6820 9990 8.217778 GCTAAAGATAAGCTTCATGTAATCGAC 58.782 37.037 0.00 0.00 35.24 4.20
6821 9991 7.926018 TGCTAAAGATAAGCTTCATGTAATCGA 59.074 33.333 0.00 0.00 40.73 3.59
6822 9992 8.006590 GTGCTAAAGATAAGCTTCATGTAATCG 58.993 37.037 0.00 0.00 40.73 3.34
6823 9993 8.286097 GGTGCTAAAGATAAGCTTCATGTAATC 58.714 37.037 0.00 0.00 40.73 1.75
6824 9994 7.775093 TGGTGCTAAAGATAAGCTTCATGTAAT 59.225 33.333 0.00 0.00 40.73 1.89
6825 9995 7.109501 TGGTGCTAAAGATAAGCTTCATGTAA 58.890 34.615 0.00 0.00 40.73 2.41
6826 9996 6.649155 TGGTGCTAAAGATAAGCTTCATGTA 58.351 36.000 0.00 0.00 40.73 2.29
6827 9997 5.500234 TGGTGCTAAAGATAAGCTTCATGT 58.500 37.500 0.00 0.00 40.73 3.21
6828 9998 6.441093 TTGGTGCTAAAGATAAGCTTCATG 57.559 37.500 0.00 0.00 40.73 3.07
6829 9999 5.591877 CCTTGGTGCTAAAGATAAGCTTCAT 59.408 40.000 0.00 0.00 40.73 2.57
6830 10000 4.943705 CCTTGGTGCTAAAGATAAGCTTCA 59.056 41.667 0.00 0.00 40.73 3.02
6831 10001 4.944317 ACCTTGGTGCTAAAGATAAGCTTC 59.056 41.667 0.00 0.00 40.73 3.86
6832 10002 4.702131 CACCTTGGTGCTAAAGATAAGCTT 59.298 41.667 3.48 3.48 40.73 3.74
6833 10003 4.265073 CACCTTGGTGCTAAAGATAAGCT 58.735 43.478 6.88 0.00 40.73 3.74
6834 10004 3.181496 GCACCTTGGTGCTAAAGATAAGC 60.181 47.826 30.77 6.13 46.04 3.09
6835 10005 4.622701 GCACCTTGGTGCTAAAGATAAG 57.377 45.455 30.77 0.00 46.04 1.73
6855 10025 1.227973 AGCGGCTTATTGCTAGGGC 60.228 57.895 0.00 0.00 40.28 5.19
6856 10026 0.886490 CCAGCGGCTTATTGCTAGGG 60.886 60.000 0.00 0.00 40.03 3.53
6857 10027 0.179045 ACCAGCGGCTTATTGCTAGG 60.179 55.000 0.00 0.00 40.03 3.02
6858 10028 1.668419 AACCAGCGGCTTATTGCTAG 58.332 50.000 0.00 0.00 40.03 3.42
6859 10029 1.742831 CAAACCAGCGGCTTATTGCTA 59.257 47.619 0.00 0.00 40.03 3.49
6860 10030 0.527565 CAAACCAGCGGCTTATTGCT 59.472 50.000 0.00 0.00 43.58 3.91
6861 10031 0.243636 ACAAACCAGCGGCTTATTGC 59.756 50.000 15.25 0.00 41.94 3.56
6862 10032 3.006940 TCTACAAACCAGCGGCTTATTG 58.993 45.455 0.00 8.59 0.00 1.90
6863 10033 3.055385 TCTCTACAAACCAGCGGCTTATT 60.055 43.478 0.00 0.00 0.00 1.40
6864 10034 2.500098 TCTCTACAAACCAGCGGCTTAT 59.500 45.455 0.00 0.00 0.00 1.73
6865 10035 1.897133 TCTCTACAAACCAGCGGCTTA 59.103 47.619 0.00 0.00 0.00 3.09
6866 10036 0.685097 TCTCTACAAACCAGCGGCTT 59.315 50.000 0.00 0.00 0.00 4.35
6867 10037 0.685097 TTCTCTACAAACCAGCGGCT 59.315 50.000 0.00 0.00 0.00 5.52
6868 10038 1.197036 GTTTCTCTACAAACCAGCGGC 59.803 52.381 0.00 0.00 31.10 6.53
6869 10039 2.489971 TGTTTCTCTACAAACCAGCGG 58.510 47.619 0.00 0.00 35.69 5.52
6870 10040 3.560068 ACTTGTTTCTCTACAAACCAGCG 59.440 43.478 0.00 0.00 37.55 5.18
6871 10041 6.613755 TTACTTGTTTCTCTACAAACCAGC 57.386 37.500 0.00 0.00 37.55 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.