Multiple sequence alignment - TraesCS3A01G157200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G157200 chr3A 100.000 3254 0 0 1 3254 154038792 154035539 0.000000e+00 6010.0
1 TraesCS3A01G157200 chr3A 100.000 3061 0 0 3508 6568 154035285 154032225 0.000000e+00 5653.0
2 TraesCS3A01G157200 chr3A 81.328 798 104 25 3820 4598 154073978 154073207 2.030000e-169 606.0
3 TraesCS3A01G157200 chr3A 83.333 456 69 3 2496 2950 154075163 154074714 1.320000e-111 414.0
4 TraesCS3A01G157200 chr3A 94.083 169 8 2 5039 5206 600920850 600921017 8.450000e-64 255.0
5 TraesCS3A01G157200 chr3A 97.059 102 2 1 54 155 372455684 372455584 3.150000e-38 171.0
6 TraesCS3A01G157200 chr3A 96.154 104 3 1 54 157 114431576 114431474 1.130000e-37 169.0
7 TraesCS3A01G157200 chr3A 88.136 59 7 0 4848 4906 154072999 154072941 3.290000e-08 71.3
8 TraesCS3A01G157200 chr3B 94.300 2035 84 18 1198 3218 194764652 194762636 0.000000e+00 3086.0
9 TraesCS3A01G157200 chr3B 95.080 1504 70 4 3544 5044 194762218 194760716 0.000000e+00 2364.0
10 TraesCS3A01G157200 chr3B 93.164 1375 67 14 5203 6568 194760718 194759362 0.000000e+00 1993.0
11 TraesCS3A01G157200 chr3B 88.953 1041 62 26 156 1176 194765648 194764641 0.000000e+00 1236.0
12 TraesCS3A01G157200 chr3B 81.030 796 114 22 3815 4598 195100065 195099295 3.390000e-167 599.0
13 TraesCS3A01G157200 chr3B 82.932 457 69 5 2496 2950 195101264 195100815 2.850000e-108 403.0
14 TraesCS3A01G157200 chr3D 91.757 1844 63 34 160 1979 136409121 136407343 0.000000e+00 2481.0
15 TraesCS3A01G157200 chr3D 94.045 1293 55 8 1977 3254 136407230 136405945 0.000000e+00 1941.0
16 TraesCS3A01G157200 chr3D 95.415 1156 50 2 3891 5044 136405503 136404349 0.000000e+00 1838.0
17 TraesCS3A01G157200 chr3D 91.994 662 35 7 5203 5854 136404351 136403698 0.000000e+00 913.0
18 TraesCS3A01G157200 chr3D 89.684 727 25 11 5878 6568 136403632 136402920 0.000000e+00 881.0
19 TraesCS3A01G157200 chr3D 80.803 797 114 24 3815 4598 136416459 136415689 7.340000e-164 588.0
20 TraesCS3A01G157200 chr3D 92.612 379 25 3 3508 3883 136405921 136405543 5.790000e-150 542.0
21 TraesCS3A01G157200 chr3D 84.772 394 59 1 2557 2950 136417603 136417211 1.720000e-105 394.0
22 TraesCS3A01G157200 chr3D 98.276 58 1 0 1 58 136409206 136409149 1.170000e-17 102.0
23 TraesCS3A01G157200 chr3D 88.136 59 6 1 4848 4906 136415483 136415426 1.180000e-07 69.4
24 TraesCS3A01G157200 chr3D 91.489 47 3 1 3651 3697 136405550 136405505 5.500000e-06 63.9
25 TraesCS3A01G157200 chr5A 94.611 167 9 0 5036 5202 320214412 320214246 6.530000e-65 259.0
26 TraesCS3A01G157200 chr5A 93.939 165 8 2 5043 5206 422444465 422444302 1.410000e-61 248.0
27 TraesCS3A01G157200 chr5A 94.737 114 5 1 54 167 608862250 608862362 6.770000e-40 176.0
28 TraesCS3A01G157200 chr5A 97.059 102 2 1 54 155 673731720 673731820 3.150000e-38 171.0
29 TraesCS3A01G157200 chr5B 95.000 160 8 0 5043 5202 407219393 407219552 1.090000e-62 252.0
30 TraesCS3A01G157200 chr5B 96.154 104 3 1 54 157 399041975 399041873 1.130000e-37 169.0
31 TraesCS3A01G157200 chr2A 94.512 164 8 1 5039 5202 419206813 419206975 1.090000e-62 252.0
32 TraesCS3A01G157200 chr2A 96.226 106 3 1 54 159 739923616 739923512 8.760000e-39 172.0
33 TraesCS3A01G157200 chr1B 96.053 152 5 1 5055 5206 666933688 666933538 5.090000e-61 246.0
34 TraesCS3A01G157200 chr4D 92.442 172 10 3 5036 5206 34661520 34661689 6.580000e-60 243.0
35 TraesCS3A01G157200 chr7B 91.429 175 13 2 5041 5215 443741560 443741388 8.510000e-59 239.0
36 TraesCS3A01G157200 chr6D 91.011 178 12 3 5043 5218 48457973 48458148 3.060000e-58 237.0
37 TraesCS3A01G157200 chr1A 78.840 293 45 7 6292 6568 186213496 186213205 1.450000e-41 182.0
38 TraesCS3A01G157200 chr2B 97.087 103 2 1 54 156 49318599 49318700 8.760000e-39 172.0
39 TraesCS3A01G157200 chr5D 97.059 102 2 1 54 155 303929161 303929261 3.150000e-38 171.0
40 TraesCS3A01G157200 chr4B 96.190 105 3 1 54 158 95455953 95455850 3.150000e-38 171.0
41 TraesCS3A01G157200 chr1D 78.157 293 47 6 6292 6568 127505029 127504738 3.150000e-38 171.0
42 TraesCS3A01G157200 chr2D 77.947 263 50 8 6305 6563 498228526 498228268 2.450000e-34 158.0
43 TraesCS3A01G157200 chr6B 93.458 107 2 1 637 738 662096792 662096898 3.170000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G157200 chr3A 154032225 154038792 6567 True 5831.500000 6010 100.000000 1 6568 2 chr3A.!!$R3 6567
1 TraesCS3A01G157200 chr3A 154072941 154075163 2222 True 363.766667 606 84.265667 2496 4906 3 chr3A.!!$R4 2410
2 TraesCS3A01G157200 chr3B 194759362 194765648 6286 True 2169.750000 3086 92.874250 156 6568 4 chr3B.!!$R1 6412
3 TraesCS3A01G157200 chr3B 195099295 195101264 1969 True 501.000000 599 81.981000 2496 4598 2 chr3B.!!$R2 2102
4 TraesCS3A01G157200 chr3D 136402920 136409206 6286 True 1095.237500 2481 93.159000 1 6568 8 chr3D.!!$R1 6567
5 TraesCS3A01G157200 chr3D 136415426 136417603 2177 True 350.466667 588 84.570333 2557 4906 3 chr3D.!!$R2 2349

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
115 116 0.109723 GTTGGCCCACCTGTCAGTAA 59.890 55.000 0.00 0.0 36.63 2.24 F
116 117 0.109723 TTGGCCCACCTGTCAGTAAC 59.890 55.000 0.00 0.0 36.63 2.50 F
1280 1325 0.035439 ACCAATGGGGCAGTCGTAAG 60.035 55.000 3.55 0.0 42.05 2.34 F
1324 1369 0.620556 AGCCTGTTGTATGGTCCAGG 59.379 55.000 0.00 0.0 45.87 4.45 F
2482 2659 1.015609 TCCCCCTCTGTATCTGTCCA 58.984 55.000 0.00 0.0 0.00 4.02 F
2581 2758 2.143925 GCTCCACACTCCACTGTAAAC 58.856 52.381 0.00 0.0 0.00 2.01 F
3643 4282 2.173569 ACTCCTGCAATAAGCCCCTAAG 59.826 50.000 0.00 0.0 44.83 2.18 F
4461 5154 0.984230 TCACTTCGGAAGCCTCCAAT 59.016 50.000 17.37 0.0 42.58 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1120 1160 0.306840 CCAGTGATCATGTGATGCGC 59.693 55.000 0.00 0.00 34.37 6.09 R
1832 1880 1.404717 CCACTGAAGTAGCTGCATCGT 60.405 52.381 4.12 1.90 0.00 3.73 R
2543 2720 1.004044 AGCAGCACTAGCACCTGAATT 59.996 47.619 8.56 0.00 45.49 2.17 R
2606 2783 2.065799 AGACCCACTTGAACAGGGATT 58.934 47.619 3.32 0.00 45.80 3.01 R
3606 4245 2.120737 GAGTGCACCTAAACCCCGGT 62.121 60.000 14.63 0.00 0.00 5.28 R
3791 4433 3.621715 GTCGCTGACAAATTAGGTTAGGG 59.378 47.826 10.65 10.65 36.54 3.53 R
5566 6288 0.178873 TCAGGTAGCCCAAGAACCCT 60.179 55.000 0.00 0.00 33.53 4.34 R
6230 7059 0.038801 CACTCTGAGCAGCTTGTCGA 60.039 55.000 4.19 0.00 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 2.671619 GCGCAGTTGGGCCACTAA 60.672 61.111 5.23 0.00 46.68 2.24
78 79 1.599518 CGCAGTTGGGCCACTAACA 60.600 57.895 5.23 0.00 40.20 2.41
79 80 1.577328 CGCAGTTGGGCCACTAACAG 61.577 60.000 5.23 0.00 40.20 3.16
80 81 1.244019 GCAGTTGGGCCACTAACAGG 61.244 60.000 5.23 0.00 40.20 4.00
81 82 0.110486 CAGTTGGGCCACTAACAGGT 59.890 55.000 5.23 0.00 40.20 4.00
82 83 0.110486 AGTTGGGCCACTAACAGGTG 59.890 55.000 5.23 0.00 40.20 4.00
88 89 2.046314 CACTAACAGGTGGGCCCG 60.046 66.667 19.37 4.81 38.74 6.13
89 90 2.203877 ACTAACAGGTGGGCCCGA 60.204 61.111 19.37 3.06 38.74 5.14
90 91 1.844289 ACTAACAGGTGGGCCCGAA 60.844 57.895 19.37 0.00 38.74 4.30
91 92 1.377229 CTAACAGGTGGGCCCGAAA 59.623 57.895 19.37 0.00 38.74 3.46
92 93 0.676782 CTAACAGGTGGGCCCGAAAG 60.677 60.000 19.37 10.07 38.74 2.62
93 94 2.757980 TAACAGGTGGGCCCGAAAGC 62.758 60.000 19.37 9.80 38.74 3.51
94 95 4.659172 CAGGTGGGCCCGAAAGCA 62.659 66.667 19.37 0.00 38.74 3.91
95 96 3.897122 AGGTGGGCCCGAAAGCAA 61.897 61.111 19.37 0.00 38.74 3.91
96 97 3.373565 GGTGGGCCCGAAAGCAAG 61.374 66.667 19.37 0.00 0.00 4.01
97 98 2.597510 GTGGGCCCGAAAGCAAGT 60.598 61.111 19.37 0.00 0.00 3.16
98 99 2.197324 TGGGCCCGAAAGCAAGTT 59.803 55.556 19.37 0.00 0.00 2.66
99 100 2.199652 TGGGCCCGAAAGCAAGTTG 61.200 57.895 19.37 0.00 0.00 3.16
100 101 2.650778 GGCCCGAAAGCAAGTTGG 59.349 61.111 4.75 0.00 0.00 3.77
101 102 2.049156 GCCCGAAAGCAAGTTGGC 60.049 61.111 4.75 0.00 0.00 4.52
102 103 2.650778 CCCGAAAGCAAGTTGGCC 59.349 61.111 4.75 0.00 0.00 5.36
103 104 2.650778 CCGAAAGCAAGTTGGCCC 59.349 61.111 0.00 0.00 0.00 5.80
104 105 2.199652 CCGAAAGCAAGTTGGCCCA 61.200 57.895 0.00 0.00 0.00 5.36
105 106 1.007387 CGAAAGCAAGTTGGCCCAC 60.007 57.895 0.00 0.00 0.00 4.61
106 107 1.367471 GAAAGCAAGTTGGCCCACC 59.633 57.895 2.72 0.00 0.00 4.61
107 108 1.075301 AAAGCAAGTTGGCCCACCT 60.075 52.632 2.72 0.00 36.63 4.00
108 109 1.402107 AAAGCAAGTTGGCCCACCTG 61.402 55.000 2.72 1.84 36.63 4.00
109 110 2.521708 GCAAGTTGGCCCACCTGT 60.522 61.111 2.72 0.00 36.63 4.00
110 111 2.564721 GCAAGTTGGCCCACCTGTC 61.565 63.158 2.72 0.00 36.63 3.51
111 112 1.152777 CAAGTTGGCCCACCTGTCA 60.153 57.895 2.72 0.00 36.63 3.58
112 113 1.151450 AAGTTGGCCCACCTGTCAG 59.849 57.895 2.72 0.00 36.63 3.51
113 114 1.645402 AAGTTGGCCCACCTGTCAGT 61.645 55.000 2.72 0.00 36.63 3.41
114 115 0.766674 AGTTGGCCCACCTGTCAGTA 60.767 55.000 2.72 0.00 36.63 2.74
115 116 0.109723 GTTGGCCCACCTGTCAGTAA 59.890 55.000 0.00 0.00 36.63 2.24
116 117 0.109723 TTGGCCCACCTGTCAGTAAC 59.890 55.000 0.00 0.00 36.63 2.50
117 118 1.002502 GGCCCACCTGTCAGTAACC 60.003 63.158 0.00 0.00 0.00 2.85
118 119 1.002502 GCCCACCTGTCAGTAACCC 60.003 63.158 0.00 0.00 0.00 4.11
119 120 1.774894 GCCCACCTGTCAGTAACCCA 61.775 60.000 0.00 0.00 0.00 4.51
120 121 0.768622 CCCACCTGTCAGTAACCCAA 59.231 55.000 0.00 0.00 0.00 4.12
121 122 1.544759 CCCACCTGTCAGTAACCCAAC 60.545 57.143 0.00 0.00 0.00 3.77
122 123 1.420138 CCACCTGTCAGTAACCCAACT 59.580 52.381 0.00 0.00 0.00 3.16
123 124 2.494059 CACCTGTCAGTAACCCAACTG 58.506 52.381 0.00 0.00 46.78 3.16
124 125 1.202770 ACCTGTCAGTAACCCAACTGC 60.203 52.381 0.00 0.00 45.34 4.40
125 126 1.148310 CTGTCAGTAACCCAACTGCG 58.852 55.000 0.00 0.00 45.34 5.18
126 127 0.882927 TGTCAGTAACCCAACTGCGC 60.883 55.000 0.00 0.00 45.34 6.09
127 128 1.302192 TCAGTAACCCAACTGCGCC 60.302 57.895 4.18 0.00 45.34 6.53
128 129 2.033602 AGTAACCCAACTGCGCCC 59.966 61.111 4.18 0.00 0.00 6.13
129 130 2.033602 GTAACCCAACTGCGCCCT 59.966 61.111 4.18 0.00 0.00 5.19
130 131 2.033448 TAACCCAACTGCGCCCTG 59.967 61.111 4.18 0.00 0.00 4.45
140 141 4.735132 GCGCCCTGCAGTACGTCA 62.735 66.667 21.94 0.00 45.45 4.35
141 142 2.507102 CGCCCTGCAGTACGTCAG 60.507 66.667 13.81 9.54 0.00 3.51
144 145 2.579201 CCTGCAGTACGTCAGGGG 59.421 66.667 21.58 5.35 44.64 4.79
145 146 1.982395 CCTGCAGTACGTCAGGGGA 60.982 63.158 21.58 0.00 44.64 4.81
146 147 1.513158 CTGCAGTACGTCAGGGGAG 59.487 63.158 5.25 0.00 0.00 4.30
147 148 2.184579 GCAGTACGTCAGGGGAGC 59.815 66.667 0.00 0.00 0.00 4.70
148 149 2.893398 CAGTACGTCAGGGGAGCC 59.107 66.667 0.00 0.00 0.00 4.70
149 150 2.754658 AGTACGTCAGGGGAGCCG 60.755 66.667 0.00 0.00 0.00 5.52
150 151 2.753043 GTACGTCAGGGGAGCCGA 60.753 66.667 0.00 0.00 0.00 5.54
151 152 2.439701 TACGTCAGGGGAGCCGAG 60.440 66.667 0.00 0.00 0.00 4.63
152 153 3.278072 TACGTCAGGGGAGCCGAGT 62.278 63.158 0.00 0.00 0.00 4.18
153 154 3.827898 CGTCAGGGGAGCCGAGTC 61.828 72.222 0.00 0.00 0.00 3.36
154 155 3.462678 GTCAGGGGAGCCGAGTCC 61.463 72.222 0.00 0.00 35.64 3.85
187 188 3.615811 TCCTCCCCCTCCTGCACT 61.616 66.667 0.00 0.00 0.00 4.40
188 189 3.086600 CCTCCCCCTCCTGCACTC 61.087 72.222 0.00 0.00 0.00 3.51
189 190 2.040278 CTCCCCCTCCTGCACTCT 59.960 66.667 0.00 0.00 0.00 3.24
190 191 1.614824 CTCCCCCTCCTGCACTCTT 60.615 63.158 0.00 0.00 0.00 2.85
191 192 1.151810 TCCCCCTCCTGCACTCTTT 60.152 57.895 0.00 0.00 0.00 2.52
192 193 0.772124 TCCCCCTCCTGCACTCTTTT 60.772 55.000 0.00 0.00 0.00 2.27
193 194 0.113190 CCCCCTCCTGCACTCTTTTT 59.887 55.000 0.00 0.00 0.00 1.94
197 198 2.072298 CCTCCTGCACTCTTTTTCTCG 58.928 52.381 0.00 0.00 0.00 4.04
204 205 0.318762 ACTCTTTTTCTCGCCTCGCT 59.681 50.000 0.00 0.00 0.00 4.93
270 280 4.410400 CCCTTCGGCGCTTCCCTT 62.410 66.667 7.64 0.00 0.00 3.95
271 281 2.820037 CCTTCGGCGCTTCCCTTC 60.820 66.667 7.64 0.00 0.00 3.46
272 282 2.820037 CTTCGGCGCTTCCCTTCC 60.820 66.667 7.64 0.00 0.00 3.46
273 283 4.404098 TTCGGCGCTTCCCTTCCC 62.404 66.667 7.64 0.00 0.00 3.97
277 287 4.491409 GCGCTTCCCTTCCCTCCC 62.491 72.222 0.00 0.00 0.00 4.30
339 349 2.579738 GAGGGTTCCGGTCTGCTC 59.420 66.667 0.00 0.00 0.00 4.26
340 350 3.003763 AGGGTTCCGGTCTGCTCC 61.004 66.667 0.00 0.00 0.00 4.70
341 351 3.003763 GGGTTCCGGTCTGCTCCT 61.004 66.667 0.00 0.00 0.00 3.69
383 400 0.455410 CTCTGCTCTGTTCTCCTCCG 59.545 60.000 0.00 0.00 0.00 4.63
431 448 0.172578 TTCAGTACCTCGCGATGGTG 59.827 55.000 28.95 17.69 38.42 4.17
474 496 1.152139 GATCTGGGGAGGAGGAGGG 60.152 68.421 0.00 0.00 0.00 4.30
475 497 1.630333 ATCTGGGGAGGAGGAGGGA 60.630 63.158 0.00 0.00 0.00 4.20
510 537 4.318618 CGAGATTCTGCAATCATCTTTCGG 60.319 45.833 1.40 0.00 41.03 4.30
537 564 3.071874 TCTGGCCTTGTGGAGTTATTG 57.928 47.619 3.32 0.00 34.57 1.90
568 595 2.734755 TGATACTCTTTGCCCCCATG 57.265 50.000 0.00 0.00 0.00 3.66
572 599 0.706433 ACTCTTTGCCCCCATGATGT 59.294 50.000 0.00 0.00 0.00 3.06
576 603 2.302445 TCTTTGCCCCCATGATGTTTTG 59.698 45.455 0.00 0.00 0.00 2.44
577 604 1.727062 TTGCCCCCATGATGTTTTGT 58.273 45.000 0.00 0.00 0.00 2.83
578 605 1.727062 TGCCCCCATGATGTTTTGTT 58.273 45.000 0.00 0.00 0.00 2.83
579 606 2.053244 TGCCCCCATGATGTTTTGTTT 58.947 42.857 0.00 0.00 0.00 2.83
580 607 2.441001 TGCCCCCATGATGTTTTGTTTT 59.559 40.909 0.00 0.00 0.00 2.43
582 609 3.244526 GCCCCCATGATGTTTTGTTTTCT 60.245 43.478 0.00 0.00 0.00 2.52
583 610 4.746395 GCCCCCATGATGTTTTGTTTTCTT 60.746 41.667 0.00 0.00 0.00 2.52
584 611 5.375773 CCCCCATGATGTTTTGTTTTCTTT 58.624 37.500 0.00 0.00 0.00 2.52
686 713 2.261361 CGACCATGGCGTCACTCA 59.739 61.111 13.04 0.00 32.74 3.41
687 714 1.807165 CGACCATGGCGTCACTCAG 60.807 63.158 13.04 0.00 32.74 3.35
803 838 5.239525 CGGAAAGGAGAACAAGAAATCAACT 59.760 40.000 0.00 0.00 0.00 3.16
853 890 8.394121 GTCCAAGATTATCATGTTCTTCACTTC 58.606 37.037 0.00 0.00 0.00 3.01
982 1021 0.250467 TCAGGTGCTTTCTCTGTGGC 60.250 55.000 0.00 0.00 0.00 5.01
983 1022 1.302033 AGGTGCTTTCTCTGTGGCG 60.302 57.895 0.00 0.00 0.00 5.69
1107 1146 6.904463 TCCCTGGTTAACTTGGTTTATTTC 57.096 37.500 5.42 0.00 0.00 2.17
1280 1325 0.035439 ACCAATGGGGCAGTCGTAAG 60.035 55.000 3.55 0.00 42.05 2.34
1324 1369 0.620556 AGCCTGTTGTATGGTCCAGG 59.379 55.000 0.00 0.00 45.87 4.45
1341 1386 3.388024 TCCAGGTAGTTATGTCAGGATGC 59.612 47.826 0.00 0.00 34.76 3.91
1381 1426 7.379529 CACTTATTTGTCTTGATTGTGTTGGAC 59.620 37.037 0.00 0.00 0.00 4.02
1387 1432 4.691216 GTCTTGATTGTGTTGGACCTACTC 59.309 45.833 7.60 4.55 0.00 2.59
1393 1438 5.818678 TTGTGTTGGACCTACTCAAGTAT 57.181 39.130 16.28 0.00 0.00 2.12
1402 1447 8.727100 TGGACCTACTCAAGTATGATATCATT 57.273 34.615 22.84 3.76 37.76 2.57
1820 1868 7.700322 ACTTATGTCATTCTTACTACATGCG 57.300 36.000 0.00 0.00 34.54 4.73
1832 1880 3.599343 ACTACATGCGAAAGAAGATGCA 58.401 40.909 0.00 0.00 42.22 3.96
1919 1967 4.810191 AGGAGTCTGTATCACTGGTTTC 57.190 45.455 0.00 0.00 0.00 2.78
2089 2255 9.979578 TTGCTTTCACTAAATTTAACATGACAT 57.020 25.926 0.00 0.00 0.00 3.06
2162 2328 2.352814 CCTGTCGTTGAACTGGTAGAGG 60.353 54.545 0.00 0.00 34.51 3.69
2220 2394 5.897377 GCTCCCAGCAAAGAAATACTTTA 57.103 39.130 0.00 0.00 45.66 1.85
2482 2659 1.015609 TCCCCCTCTGTATCTGTCCA 58.984 55.000 0.00 0.00 0.00 4.02
2486 2663 3.203040 CCCCCTCTGTATCTGTCCAAAAT 59.797 47.826 0.00 0.00 0.00 1.82
2581 2758 2.143925 GCTCCACACTCCACTGTAAAC 58.856 52.381 0.00 0.00 0.00 2.01
2606 2783 6.503524 GTCCTTGCAAGTAACATTCTTTTGA 58.496 36.000 24.35 7.33 0.00 2.69
2636 2813 2.708861 TCAAGTGGGTCTGGTAATGTGT 59.291 45.455 0.00 0.00 0.00 3.72
2710 2887 4.686191 AAAGGCAGTAGATGGATCTGAG 57.314 45.455 0.00 0.00 37.76 3.35
2713 2890 3.640967 AGGCAGTAGATGGATCTGAGAAC 59.359 47.826 0.00 0.00 37.76 3.01
2786 2963 3.411446 CACCACTATGCAAAGACCTCAA 58.589 45.455 0.00 0.00 0.00 3.02
2870 3047 3.448093 TTCCTGCCACCAATATGTGAA 57.552 42.857 0.00 0.00 38.55 3.18
3006 3189 5.337578 TCCAACTATCATGACATTGACGA 57.662 39.130 14.15 4.51 0.00 4.20
3007 3190 5.109210 TCCAACTATCATGACATTGACGAC 58.891 41.667 14.15 0.00 0.00 4.34
3027 3210 4.271049 CGACGAATACTGAAAGCATCCAAT 59.729 41.667 0.00 0.00 37.60 3.16
3160 3343 4.304110 TCACAACACCGTATCTGAACTTC 58.696 43.478 0.00 0.00 0.00 3.01
3204 3387 8.682936 ATTCTTCTAACTTGATTGAGTTGTGT 57.317 30.769 0.81 0.00 39.99 3.72
3212 3744 5.356751 ACTTGATTGAGTTGTGTGTGCTTTA 59.643 36.000 0.00 0.00 0.00 1.85
3643 4282 2.173569 ACTCCTGCAATAAGCCCCTAAG 59.826 50.000 0.00 0.00 44.83 2.18
3644 4283 2.439507 CTCCTGCAATAAGCCCCTAAGA 59.560 50.000 0.00 0.00 44.83 2.10
3723 4362 7.761038 ATACCGTGTCAGATAGTATCATTCA 57.239 36.000 12.66 5.26 0.00 2.57
3791 4433 9.450807 GTTAAATCATGTTGGCATATCACTAAC 57.549 33.333 0.00 0.00 33.30 2.34
3803 4445 7.073215 TGGCATATCACTAACCCTAACCTAATT 59.927 37.037 0.00 0.00 0.00 1.40
3836 4479 2.925578 TGTCATATTTGCACTGCAGC 57.074 45.000 15.27 1.39 40.61 5.25
3868 4511 8.561738 TTTAGAGGATTTACACCTGAAATCAC 57.438 34.615 9.59 4.34 42.59 3.06
4098 4782 2.893489 CCACCTTCCCCTTCTTTTTCAG 59.107 50.000 0.00 0.00 0.00 3.02
4099 4783 3.436470 CCACCTTCCCCTTCTTTTTCAGA 60.436 47.826 0.00 0.00 0.00 3.27
4333 5026 7.417797 GGCCTTGTGTTGAATGATAAACCATAT 60.418 37.037 0.00 0.00 0.00 1.78
4461 5154 0.984230 TCACTTCGGAAGCCTCCAAT 59.016 50.000 17.37 0.00 42.58 3.16
4492 5185 3.129988 CAGAACCCTCATTTCTTGCCATC 59.870 47.826 0.00 0.00 30.56 3.51
4498 5191 4.339247 CCCTCATTTCTTGCCATCGTAAAT 59.661 41.667 0.00 0.00 0.00 1.40
4545 5239 5.408604 GGCGTAAAAGAAGATTCTCAGTTGA 59.591 40.000 0.00 0.00 36.28 3.18
4576 5270 3.366052 AAATTGCTGATACCCGTCCTT 57.634 42.857 0.00 0.00 0.00 3.36
4619 5330 5.122396 GCATATTGGGTTAGAATAAGCTCCG 59.878 44.000 0.00 0.00 30.75 4.63
4641 5352 8.929827 TCCGACGATACATAAGTAAATCAAAA 57.070 30.769 0.00 0.00 33.13 2.44
4743 5465 1.133262 ACTGGGACGCCCTAATAGCTA 60.133 52.381 14.76 0.00 45.70 3.32
4797 5519 7.124147 CCTGCCATCTCCTTAATTCCTTTTTAA 59.876 37.037 0.00 0.00 0.00 1.52
4820 5542 5.715070 ACTGTGATAAGTCAGCTCTGTAAC 58.285 41.667 0.00 0.00 34.36 2.50
4913 5635 9.474920 TTCAAATTTTCCACATCTTCATAACAC 57.525 29.630 0.00 0.00 0.00 3.32
4914 5636 8.087750 TCAAATTTTCCACATCTTCATAACACC 58.912 33.333 0.00 0.00 0.00 4.16
4962 5684 9.034544 GTTGAACAAATAGAGCAAGAAAAATGT 57.965 29.630 0.00 0.00 0.00 2.71
4987 5709 5.581126 TTCTGAAATATCACCACCATTGC 57.419 39.130 0.00 0.00 0.00 3.56
5048 5770 2.501261 GTGGAACTGGTTTGTACTCCC 58.499 52.381 0.00 0.00 0.00 4.30
5049 5771 2.105993 GTGGAACTGGTTTGTACTCCCT 59.894 50.000 0.00 0.00 0.00 4.20
5050 5772 2.370849 TGGAACTGGTTTGTACTCCCTC 59.629 50.000 0.00 0.00 0.00 4.30
5051 5773 2.638363 GGAACTGGTTTGTACTCCCTCT 59.362 50.000 0.00 0.00 0.00 3.69
5052 5774 3.557264 GGAACTGGTTTGTACTCCCTCTG 60.557 52.174 0.00 0.00 0.00 3.35
5053 5775 2.690840 ACTGGTTTGTACTCCCTCTGT 58.309 47.619 0.00 0.00 0.00 3.41
5054 5776 3.046374 ACTGGTTTGTACTCCCTCTGTT 58.954 45.455 0.00 0.00 0.00 3.16
5055 5777 3.071167 ACTGGTTTGTACTCCCTCTGTTC 59.929 47.826 0.00 0.00 0.00 3.18
5056 5778 2.370849 TGGTTTGTACTCCCTCTGTTCC 59.629 50.000 0.00 0.00 0.00 3.62
5057 5779 2.638363 GGTTTGTACTCCCTCTGTTCCT 59.362 50.000 0.00 0.00 0.00 3.36
5058 5780 3.836562 GGTTTGTACTCCCTCTGTTCCTA 59.163 47.826 0.00 0.00 0.00 2.94
5059 5781 4.285260 GGTTTGTACTCCCTCTGTTCCTAA 59.715 45.833 0.00 0.00 0.00 2.69
5060 5782 5.221783 GGTTTGTACTCCCTCTGTTCCTAAA 60.222 44.000 0.00 0.00 0.00 1.85
5061 5783 6.473758 GTTTGTACTCCCTCTGTTCCTAAAT 58.526 40.000 0.00 0.00 0.00 1.40
5062 5784 7.310858 GGTTTGTACTCCCTCTGTTCCTAAATA 60.311 40.741 0.00 0.00 0.00 1.40
5063 5785 7.989947 TTGTACTCCCTCTGTTCCTAAATAT 57.010 36.000 0.00 0.00 0.00 1.28
5064 5786 9.496710 TTTGTACTCCCTCTGTTCCTAAATATA 57.503 33.333 0.00 0.00 0.00 0.86
5065 5787 9.496710 TTGTACTCCCTCTGTTCCTAAATATAA 57.503 33.333 0.00 0.00 0.00 0.98
5066 5788 9.144298 TGTACTCCCTCTGTTCCTAAATATAAG 57.856 37.037 0.00 0.00 0.00 1.73
5067 5789 9.145442 GTACTCCCTCTGTTCCTAAATATAAGT 57.855 37.037 0.00 0.00 0.00 2.24
5068 5790 8.252624 ACTCCCTCTGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 0.00 3.01
5069 5791 8.068733 ACTCCCTCTGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 0.00 3.24
5070 5792 8.855804 TCCCTCTGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
5071 5793 9.280456 TCCCTCTGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
5072 5794 9.907229 CCCTCTGTTCCTAAATATAAGTCTTTT 57.093 33.333 0.00 0.00 0.00 2.27
5100 5822 8.307483 AGAGATTTCAATATGGACTACATACGG 58.693 37.037 0.00 0.00 44.41 4.02
5101 5823 8.190326 AGATTTCAATATGGACTACATACGGA 57.810 34.615 0.00 0.00 44.41 4.69
5102 5824 8.816894 AGATTTCAATATGGACTACATACGGAT 58.183 33.333 0.00 0.00 44.41 4.18
5103 5825 8.777865 ATTTCAATATGGACTACATACGGATG 57.222 34.615 5.94 5.94 44.41 3.51
5105 5827 8.411991 TTCAATATGGACTACATACGGATGTA 57.588 34.615 19.32 19.32 44.77 2.29
5106 5828 8.589701 TCAATATGGACTACATACGGATGTAT 57.410 34.615 20.64 9.39 45.42 2.29
5107 5829 9.689501 TCAATATGGACTACATACGGATGTATA 57.310 33.333 20.64 11.30 45.42 1.47
5112 5834 8.728337 TGGACTACATACGGATGTATATAGAC 57.272 38.462 20.64 10.95 45.42 2.59
5113 5835 8.323567 TGGACTACATACGGATGTATATAGACA 58.676 37.037 20.64 12.12 45.42 3.41
5114 5836 9.339850 GGACTACATACGGATGTATATAGACAT 57.660 37.037 20.64 12.70 45.42 3.06
5143 5865 6.259550 AGAATGTAGGTTCACTCATTTTGC 57.740 37.500 0.00 0.00 31.53 3.68
5144 5866 6.006449 AGAATGTAGGTTCACTCATTTTGCT 58.994 36.000 0.00 0.00 31.53 3.91
5145 5867 5.886960 ATGTAGGTTCACTCATTTTGCTC 57.113 39.130 0.00 0.00 0.00 4.26
5146 5868 4.072131 TGTAGGTTCACTCATTTTGCTCC 58.928 43.478 0.00 0.00 0.00 4.70
5147 5869 2.154462 AGGTTCACTCATTTTGCTCCG 58.846 47.619 0.00 0.00 0.00 4.63
5148 5870 1.880027 GGTTCACTCATTTTGCTCCGT 59.120 47.619 0.00 0.00 0.00 4.69
5149 5871 3.071479 GGTTCACTCATTTTGCTCCGTA 58.929 45.455 0.00 0.00 0.00 4.02
5150 5872 3.689649 GGTTCACTCATTTTGCTCCGTAT 59.310 43.478 0.00 0.00 0.00 3.06
5151 5873 4.437390 GGTTCACTCATTTTGCTCCGTATG 60.437 45.833 0.00 0.00 0.00 2.39
5152 5874 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
5153 5875 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
5154 5876 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
5155 5877 3.871594 ACTCATTTTGCTCCGTATGTAGC 59.128 43.478 0.00 0.00 39.25 3.58
5156 5878 4.122776 CTCATTTTGCTCCGTATGTAGCT 58.877 43.478 0.90 0.00 39.53 3.32
5157 5879 4.119862 TCATTTTGCTCCGTATGTAGCTC 58.880 43.478 0.90 0.00 39.53 4.09
5158 5880 3.603158 TTTTGCTCCGTATGTAGCTCA 57.397 42.857 0.90 0.00 39.53 4.26
5159 5881 3.819564 TTTGCTCCGTATGTAGCTCAT 57.180 42.857 0.90 0.00 39.53 2.90
5160 5882 4.929819 TTTGCTCCGTATGTAGCTCATA 57.070 40.909 0.90 0.00 39.53 2.15
5161 5883 5.468540 TTTGCTCCGTATGTAGCTCATAT 57.531 39.130 0.90 0.00 40.54 1.78
5162 5884 5.468540 TTGCTCCGTATGTAGCTCATATT 57.531 39.130 0.90 0.00 40.54 1.28
5163 5885 6.584185 TTGCTCCGTATGTAGCTCATATTA 57.416 37.500 0.90 0.00 40.54 0.98
5164 5886 6.196079 TGCTCCGTATGTAGCTCATATTAG 57.804 41.667 0.90 0.00 40.54 1.73
5165 5887 5.944007 TGCTCCGTATGTAGCTCATATTAGA 59.056 40.000 0.90 0.00 40.54 2.10
5166 5888 6.433093 TGCTCCGTATGTAGCTCATATTAGAA 59.567 38.462 0.90 0.00 40.54 2.10
5167 5889 7.122799 TGCTCCGTATGTAGCTCATATTAGAAT 59.877 37.037 0.90 0.00 40.54 2.40
5168 5890 7.646130 GCTCCGTATGTAGCTCATATTAGAATC 59.354 40.741 0.00 0.00 40.54 2.52
5169 5891 8.809468 TCCGTATGTAGCTCATATTAGAATCT 57.191 34.615 0.00 0.00 40.54 2.40
5170 5892 8.894731 TCCGTATGTAGCTCATATTAGAATCTC 58.105 37.037 0.00 0.00 40.54 2.75
5171 5893 8.898761 CCGTATGTAGCTCATATTAGAATCTCT 58.101 37.037 0.00 0.00 40.54 3.10
5199 5921 9.868160 AAAAGACTTATATTTAGGAATGGAGGG 57.132 33.333 0.00 0.00 0.00 4.30
5200 5922 8.814448 AAGACTTATATTTAGGAATGGAGGGA 57.186 34.615 0.00 0.00 0.00 4.20
5201 5923 8.442660 AGACTTATATTTAGGAATGGAGGGAG 57.557 38.462 0.00 0.00 0.00 4.30
5202 5924 7.459444 AGACTTATATTTAGGAATGGAGGGAGG 59.541 40.741 0.00 0.00 0.00 4.30
5203 5925 7.089566 ACTTATATTTAGGAATGGAGGGAGGT 58.910 38.462 0.00 0.00 0.00 3.85
5243 5965 4.787551 ACATCCTTCAGTTTTGTACCACA 58.212 39.130 0.00 0.00 0.00 4.17
5266 5988 1.273048 TGCATTGTTCTTCATGCCACC 59.727 47.619 1.84 0.00 39.12 4.61
5456 6178 2.341846 TTGCCGGTTTCAAGAAGTCT 57.658 45.000 1.90 0.00 0.00 3.24
5566 6288 1.227639 GAGATCGCGTCTACCAGCTA 58.772 55.000 5.77 0.00 37.29 3.32
5570 6292 2.119655 CGCGTCTACCAGCTAGGGT 61.120 63.158 0.00 0.82 43.89 4.34
5571 6293 1.664321 CGCGTCTACCAGCTAGGGTT 61.664 60.000 0.33 0.00 43.89 4.11
5572 6294 0.102663 GCGTCTACCAGCTAGGGTTC 59.897 60.000 0.33 0.00 43.89 3.62
5573 6295 1.765230 CGTCTACCAGCTAGGGTTCT 58.235 55.000 0.33 0.00 43.89 3.01
5574 6296 2.100989 CGTCTACCAGCTAGGGTTCTT 58.899 52.381 0.33 0.00 43.89 2.52
5575 6297 2.159226 CGTCTACCAGCTAGGGTTCTTG 60.159 54.545 0.33 0.00 43.89 3.02
5576 6298 2.168728 GTCTACCAGCTAGGGTTCTTGG 59.831 54.545 0.33 0.00 43.89 3.61
5577 6299 1.486726 CTACCAGCTAGGGTTCTTGGG 59.513 57.143 0.33 0.00 43.89 4.12
5578 6300 1.077429 CCAGCTAGGGTTCTTGGGC 60.077 63.158 0.00 0.00 0.00 5.36
5579 6301 1.566298 CCAGCTAGGGTTCTTGGGCT 61.566 60.000 0.00 0.00 0.00 5.19
5659 6381 5.529430 TGTAAATCACAATCCACACGAAAGT 59.471 36.000 0.00 0.00 38.78 2.66
5673 6395 4.995487 ACACGAAAGTTATGGAAGAAGTCC 59.005 41.667 0.00 0.00 46.40 3.85
5681 6403 1.685820 GGAAGAAGTCCAGGGGTGG 59.314 63.158 0.00 0.00 46.97 4.61
5688 6410 0.720232 AGTCCAGGGGTGGTGGTATA 59.280 55.000 0.00 0.00 36.37 1.47
5706 6428 7.441458 GGTGGTATAACTGTAGATGAATTGGTC 59.559 40.741 0.00 0.00 0.00 4.02
5769 6496 7.094075 ACGTTATATGTCTACCTCACTTTGTGA 60.094 37.037 0.37 0.37 40.50 3.58
5846 6578 5.301551 TGTGAATAGAACATGTGCCACTTTT 59.698 36.000 0.00 0.00 0.00 2.27
5875 6663 7.433680 ACCACTAGCAAAATAAAAACAAGGAG 58.566 34.615 0.00 0.00 0.00 3.69
5884 6672 7.929941 AAATAAAAACAAGGAGGCAAAACAA 57.070 28.000 0.00 0.00 0.00 2.83
5894 6682 7.234577 ACAAGGAGGCAAAACAAAAGGATATTA 59.765 33.333 0.00 0.00 0.00 0.98
5955 6745 7.010923 CAGGTTAGAAAGATAAGCAGACATGTC 59.989 40.741 18.47 18.47 35.96 3.06
5957 6747 8.198109 GGTTAGAAAGATAAGCAGACATGTCTA 58.802 37.037 27.44 13.12 37.98 2.59
6063 6886 7.958088 TCATCAGGTATATAACGGAAATCACA 58.042 34.615 4.67 0.00 0.00 3.58
6078 6901 5.989777 GGAAATCACAACAGTACAGTACAGT 59.010 40.000 13.37 8.19 0.00 3.55
6080 6903 7.115947 GGAAATCACAACAGTACAGTACAGTAC 59.884 40.741 18.11 18.11 43.61 2.73
6081 6904 6.644248 ATCACAACAGTACAGTACAGTACA 57.356 37.500 25.01 7.83 45.25 2.90
6082 6905 6.068473 TCACAACAGTACAGTACAGTACAG 57.932 41.667 25.01 20.59 45.25 2.74
6083 6906 5.009310 TCACAACAGTACAGTACAGTACAGG 59.991 44.000 25.01 19.39 45.25 4.00
6084 6907 5.009310 CACAACAGTACAGTACAGTACAGGA 59.991 44.000 25.01 0.00 45.25 3.86
6125 6954 3.637229 AGAACACGGGGTATCTGTATCTG 59.363 47.826 0.00 0.00 32.30 2.90
6126 6955 3.028094 ACACGGGGTATCTGTATCTGT 57.972 47.619 0.00 0.00 32.77 3.41
6127 6956 4.174704 ACACGGGGTATCTGTATCTGTA 57.825 45.455 0.00 0.00 32.77 2.74
6128 6957 4.737578 ACACGGGGTATCTGTATCTGTAT 58.262 43.478 0.00 0.00 32.77 2.29
6129 6958 4.765856 ACACGGGGTATCTGTATCTGTATC 59.234 45.833 0.00 0.00 32.77 2.24
6130 6959 5.010933 CACGGGGTATCTGTATCTGTATCT 58.989 45.833 0.00 0.00 32.77 1.98
6244 7073 2.049156 CCGTCGACAAGCTGCTCA 60.049 61.111 17.16 0.00 0.00 4.26
6247 7076 1.069924 CGTCGACAAGCTGCTCAGAG 61.070 60.000 17.16 0.00 0.00 3.35
6248 7077 0.038709 GTCGACAAGCTGCTCAGAGT 60.039 55.000 11.55 0.00 0.00 3.24
6282 7111 0.530288 GCTCTGCCGTCTTCTTCTCT 59.470 55.000 0.00 0.00 0.00 3.10
6360 7189 4.681978 ACGAGCGCCCAGTTCACC 62.682 66.667 2.29 0.00 0.00 4.02
6435 7264 0.840722 TCTTCTGGGGGTCCTTGGTC 60.841 60.000 0.00 0.00 0.00 4.02
6549 7378 1.299850 GTTGCCGTTGCCCTTGAAC 60.300 57.895 0.00 0.00 36.33 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 4.715523 TAGTGGCCCAACTGCGCC 62.716 66.667 4.18 0.00 45.92 6.53
59 60 2.671619 TTAGTGGCCCAACTGCGC 60.672 61.111 0.00 0.00 0.00 6.09
60 61 1.577328 CTGTTAGTGGCCCAACTGCG 61.577 60.000 0.00 0.00 0.00 5.18
61 62 1.244019 CCTGTTAGTGGCCCAACTGC 61.244 60.000 0.00 0.00 0.00 4.40
64 65 2.641197 CACCTGTTAGTGGCCCAAC 58.359 57.895 0.00 2.31 33.95 3.77
74 75 1.377229 CTTTCGGGCCCACCTGTTA 59.623 57.895 24.92 0.00 43.58 2.41
75 76 2.115266 CTTTCGGGCCCACCTGTT 59.885 61.111 24.92 0.00 43.58 3.16
76 77 4.660938 GCTTTCGGGCCCACCTGT 62.661 66.667 24.92 0.00 43.58 4.00
78 79 3.868200 CTTGCTTTCGGGCCCACCT 62.868 63.158 24.92 0.00 36.97 4.00
79 80 3.373565 CTTGCTTTCGGGCCCACC 61.374 66.667 24.92 4.81 0.00 4.61
80 81 2.200337 AACTTGCTTTCGGGCCCAC 61.200 57.895 24.92 5.64 0.00 4.61
81 82 2.197324 AACTTGCTTTCGGGCCCA 59.803 55.556 24.92 6.15 0.00 5.36
82 83 2.650778 CAACTTGCTTTCGGGCCC 59.349 61.111 13.57 13.57 0.00 5.80
84 85 2.049156 GCCAACTTGCTTTCGGGC 60.049 61.111 0.00 0.00 0.00 6.13
85 86 2.650778 GGCCAACTTGCTTTCGGG 59.349 61.111 0.00 0.00 0.00 5.14
86 87 2.199652 TGGGCCAACTTGCTTTCGG 61.200 57.895 2.13 0.00 0.00 4.30
87 88 1.007387 GTGGGCCAACTTGCTTTCG 60.007 57.895 8.40 0.00 0.00 3.46
88 89 1.115326 AGGTGGGCCAACTTGCTTTC 61.115 55.000 21.01 0.00 37.19 2.62
89 90 1.075301 AGGTGGGCCAACTTGCTTT 60.075 52.632 21.01 0.00 37.19 3.51
90 91 1.833934 CAGGTGGGCCAACTTGCTT 60.834 57.895 24.60 0.00 37.19 3.91
91 92 2.203538 CAGGTGGGCCAACTTGCT 60.204 61.111 24.60 0.00 37.19 3.91
92 93 2.521708 ACAGGTGGGCCAACTTGC 60.522 61.111 24.60 0.90 37.19 4.01
93 94 1.152777 TGACAGGTGGGCCAACTTG 60.153 57.895 24.60 20.50 37.19 3.16
94 95 1.151450 CTGACAGGTGGGCCAACTT 59.849 57.895 24.60 13.86 37.19 2.66
95 96 0.766674 TACTGACAGGTGGGCCAACT 60.767 55.000 21.01 21.01 37.19 3.16
96 97 0.109723 TTACTGACAGGTGGGCCAAC 59.890 55.000 15.52 15.52 37.19 3.77
97 98 0.109723 GTTACTGACAGGTGGGCCAA 59.890 55.000 8.40 0.00 37.19 4.52
98 99 1.758592 GTTACTGACAGGTGGGCCA 59.241 57.895 0.00 0.00 37.19 5.36
99 100 1.002502 GGTTACTGACAGGTGGGCC 60.003 63.158 7.51 0.00 0.00 5.80
100 101 1.002502 GGGTTACTGACAGGTGGGC 60.003 63.158 7.51 0.00 0.00 5.36
101 102 0.768622 TTGGGTTACTGACAGGTGGG 59.231 55.000 7.51 0.00 0.00 4.61
102 103 1.420138 AGTTGGGTTACTGACAGGTGG 59.580 52.381 7.51 0.00 0.00 4.61
103 104 2.494059 CAGTTGGGTTACTGACAGGTG 58.506 52.381 7.51 0.00 46.72 4.00
104 105 1.202770 GCAGTTGGGTTACTGACAGGT 60.203 52.381 7.51 0.00 46.72 4.00
105 106 1.523758 GCAGTTGGGTTACTGACAGG 58.476 55.000 7.51 0.00 46.72 4.00
106 107 1.148310 CGCAGTTGGGTTACTGACAG 58.852 55.000 7.88 0.00 46.72 3.51
107 108 0.882927 GCGCAGTTGGGTTACTGACA 60.883 55.000 0.30 0.00 46.72 3.58
108 109 1.574702 GGCGCAGTTGGGTTACTGAC 61.575 60.000 10.83 0.00 46.72 3.51
109 110 1.302192 GGCGCAGTTGGGTTACTGA 60.302 57.895 10.83 0.00 46.72 3.41
110 111 2.332654 GGGCGCAGTTGGGTTACTG 61.333 63.158 10.83 0.00 46.55 2.74
111 112 2.033602 GGGCGCAGTTGGGTTACT 59.966 61.111 10.83 0.00 0.00 2.24
112 113 2.033602 AGGGCGCAGTTGGGTTAC 59.966 61.111 10.83 0.00 0.00 2.50
113 114 2.033448 CAGGGCGCAGTTGGGTTA 59.967 61.111 10.83 0.00 0.00 2.85
123 124 4.735132 TGACGTACTGCAGGGCGC 62.735 66.667 25.03 19.20 42.89 6.53
124 125 2.507102 CTGACGTACTGCAGGGCG 60.507 66.667 23.98 23.98 0.00 6.13
125 126 2.125512 CCTGACGTACTGCAGGGC 60.126 66.667 19.93 9.18 46.24 5.19
128 129 1.513158 CTCCCCTGACGTACTGCAG 59.487 63.158 13.48 13.48 0.00 4.41
129 130 2.646175 GCTCCCCTGACGTACTGCA 61.646 63.158 0.00 0.00 0.00 4.41
130 131 2.184579 GCTCCCCTGACGTACTGC 59.815 66.667 0.00 0.00 0.00 4.40
131 132 2.893398 GGCTCCCCTGACGTACTG 59.107 66.667 0.00 0.00 0.00 2.74
132 133 2.754658 CGGCTCCCCTGACGTACT 60.755 66.667 0.00 0.00 33.11 2.73
133 134 2.753043 TCGGCTCCCCTGACGTAC 60.753 66.667 0.00 0.00 39.83 3.67
134 135 2.439701 CTCGGCTCCCCTGACGTA 60.440 66.667 0.00 0.00 39.83 3.57
135 136 4.680537 ACTCGGCTCCCCTGACGT 62.681 66.667 0.00 0.00 39.83 4.34
136 137 3.827898 GACTCGGCTCCCCTGACG 61.828 72.222 0.00 0.00 40.31 4.35
137 138 3.462678 GGACTCGGCTCCCCTGAC 61.463 72.222 0.00 0.00 0.00 3.51
138 139 4.779733 GGGACTCGGCTCCCCTGA 62.780 72.222 7.00 0.00 44.12 3.86
143 144 4.779733 TCAGGGGGACTCGGCTCC 62.780 72.222 0.00 0.00 0.00 4.70
144 145 3.462678 GTCAGGGGGACTCGGCTC 61.463 72.222 0.00 0.00 43.46 4.70
178 179 1.462670 GCGAGAAAAAGAGTGCAGGAG 59.537 52.381 0.00 0.00 0.00 3.69
187 188 0.603569 AGAGCGAGGCGAGAAAAAGA 59.396 50.000 0.00 0.00 0.00 2.52
188 189 1.433534 AAGAGCGAGGCGAGAAAAAG 58.566 50.000 0.00 0.00 0.00 2.27
189 190 1.878953 AAAGAGCGAGGCGAGAAAAA 58.121 45.000 0.00 0.00 0.00 1.94
190 191 1.878953 AAAAGAGCGAGGCGAGAAAA 58.121 45.000 0.00 0.00 0.00 2.29
191 192 1.798813 GAAAAAGAGCGAGGCGAGAAA 59.201 47.619 0.00 0.00 0.00 2.52
192 193 1.000955 AGAAAAAGAGCGAGGCGAGAA 59.999 47.619 0.00 0.00 0.00 2.87
193 194 0.603569 AGAAAAAGAGCGAGGCGAGA 59.396 50.000 0.00 0.00 0.00 4.04
197 198 1.421877 GCGAGAAAAAGAGCGAGGC 59.578 57.895 0.00 0.00 0.00 4.70
204 205 3.368116 GCCAGTAGTAGGCGAGAAAAAGA 60.368 47.826 0.00 0.00 43.15 2.52
269 279 4.752594 CCGGGGAAGGGGAGGGAA 62.753 72.222 0.00 0.00 0.00 3.97
339 349 2.123640 GGAGGGAGTCGGAGGAGG 60.124 72.222 0.00 0.00 0.00 4.30
340 350 1.454847 CAGGAGGGAGTCGGAGGAG 60.455 68.421 0.00 0.00 0.00 3.69
341 351 2.684104 CAGGAGGGAGTCGGAGGA 59.316 66.667 0.00 0.00 0.00 3.71
383 400 0.166814 GAGCAAACCAGCACGATCAC 59.833 55.000 0.00 0.00 36.85 3.06
431 448 6.026513 GCACAATCAATCAAAAGAGTAGAGC 58.973 40.000 0.00 0.00 0.00 4.09
510 537 2.294512 CTCCACAAGGCCAGAAAGAAAC 59.705 50.000 5.01 0.00 33.74 2.78
537 564 5.614231 GCAAAGAGTATCATCGCATCATGAC 60.614 44.000 0.00 0.00 35.57 3.06
568 595 7.859875 CAGGAGAGAGAAAGAAAACAAAACATC 59.140 37.037 0.00 0.00 0.00 3.06
572 599 5.220854 CGCAGGAGAGAGAAAGAAAACAAAA 60.221 40.000 0.00 0.00 0.00 2.44
768 803 9.706691 CTTGTTCTCCTTTCCGCTTTATATATA 57.293 33.333 0.00 0.00 0.00 0.86
769 804 8.429641 TCTTGTTCTCCTTTCCGCTTTATATAT 58.570 33.333 0.00 0.00 0.00 0.86
772 807 6.045072 TCTTGTTCTCCTTTCCGCTTTATA 57.955 37.500 0.00 0.00 0.00 0.98
779 814 5.239525 AGTTGATTTCTTGTTCTCCTTTCCG 59.760 40.000 0.00 0.00 0.00 4.30
781 816 8.841300 ACTTAGTTGATTTCTTGTTCTCCTTTC 58.159 33.333 0.00 0.00 0.00 2.62
787 822 6.601332 TCCCACTTAGTTGATTTCTTGTTCT 58.399 36.000 0.00 0.00 0.00 3.01
853 890 2.663606 CGCATGAACGACATATGCATGG 60.664 50.000 10.16 3.88 45.58 3.66
880 919 3.734735 GCGGATAACAGAGGTAAATCGAC 59.265 47.826 0.00 0.00 0.00 4.20
882 921 3.057734 GGCGGATAACAGAGGTAAATCG 58.942 50.000 0.00 0.00 0.00 3.34
982 1021 3.071602 ACCATCCTCTAATCCAATCCACG 59.928 47.826 0.00 0.00 0.00 4.94
983 1022 4.713792 ACCATCCTCTAATCCAATCCAC 57.286 45.455 0.00 0.00 0.00 4.02
1119 1159 1.011333 CAGTGATCATGTGATGCGCA 58.989 50.000 14.96 14.96 34.37 6.09
1120 1160 0.306840 CCAGTGATCATGTGATGCGC 59.693 55.000 0.00 0.00 34.37 6.09
1121 1161 1.944032 TCCAGTGATCATGTGATGCG 58.056 50.000 0.00 0.00 34.37 4.73
1221 1266 5.239359 ACACACACATGCATCATCATTAC 57.761 39.130 0.00 0.00 0.00 1.89
1324 1369 8.894768 AGATTTAAGCATCCTGACATAACTAC 57.105 34.615 0.00 0.00 0.00 2.73
1832 1880 1.404717 CCACTGAAGTAGCTGCATCGT 60.405 52.381 4.12 1.90 0.00 3.73
1919 1967 5.645497 AGAGCACTAAACTAATTGCTTCCTG 59.355 40.000 0.00 0.00 45.32 3.86
2089 2255 6.186957 TCATTCCTAATGAAAGCCAGCTAAA 58.813 36.000 0.00 0.00 44.47 1.85
2137 2303 3.547054 ACCAGTTCAACGACAGGTTAA 57.453 42.857 0.00 0.00 36.14 2.01
2162 2328 8.887036 AGGTTTCATTAAAATTGGTCTGAAAC 57.113 30.769 18.95 18.95 45.78 2.78
2220 2394 1.686115 GGTGCTATCCCTGCCAATTGT 60.686 52.381 4.43 0.00 0.00 2.71
2349 2523 1.450312 CACTCATCTCGTTGGGGGC 60.450 63.158 0.00 0.00 0.00 5.80
2413 2587 9.834628 CAACTACGGCATTTTAATTTAGAAGAA 57.165 29.630 0.00 0.00 0.00 2.52
2414 2588 7.966204 GCAACTACGGCATTTTAATTTAGAAGA 59.034 33.333 0.00 0.00 0.00 2.87
2415 2589 7.968405 AGCAACTACGGCATTTTAATTTAGAAG 59.032 33.333 0.00 0.00 0.00 2.85
2543 2720 1.004044 AGCAGCACTAGCACCTGAATT 59.996 47.619 8.56 0.00 45.49 2.17
2581 2758 4.749245 AAGAATGTTACTTGCAAGGACG 57.251 40.909 29.18 6.64 0.00 4.79
2606 2783 2.065799 AGACCCACTTGAACAGGGATT 58.934 47.619 3.32 0.00 45.80 3.01
2636 2813 4.081752 AGGTTCATGTTTTTGCAGTGACAA 60.082 37.500 0.00 0.00 0.00 3.18
2684 2861 3.386768 TCCATCTACTGCCTTTATCGC 57.613 47.619 0.00 0.00 0.00 4.58
2710 2887 7.118680 TGGTTAAATAACTTGTGATCCTCGTTC 59.881 37.037 3.55 0.00 36.47 3.95
2713 2890 6.978343 TGGTTAAATAACTTGTGATCCTCG 57.022 37.500 3.55 0.00 36.47 4.63
2786 2963 2.706190 GGACATAGCATACCTTCCCTGT 59.294 50.000 0.00 0.00 0.00 4.00
2823 3000 8.877864 TTAATTCACAGTTGAACCCAATAGAT 57.122 30.769 0.00 0.00 44.66 1.98
2870 3047 2.417719 GTCCAATCTTTGCTCGTCTGT 58.582 47.619 0.00 0.00 0.00 3.41
3006 3189 4.336433 CCATTGGATGCTTTCAGTATTCGT 59.664 41.667 0.00 0.00 0.00 3.85
3007 3190 4.336433 ACCATTGGATGCTTTCAGTATTCG 59.664 41.667 10.37 0.00 0.00 3.34
3027 3210 8.739039 CAGTTTGATGACAATAATAAAGGACCA 58.261 33.333 0.00 0.00 35.85 4.02
3160 3343 9.451002 AGAAGAATCAATGAGCATATCCTAATG 57.549 33.333 0.00 0.00 0.00 1.90
3204 3387 3.692690 GGGGGACATTAGTTAAAGCACA 58.307 45.455 0.00 0.00 0.00 4.57
3555 4194 3.423571 CAAGAAATGCAGAGAACGATGC 58.576 45.455 0.00 0.00 42.86 3.91
3606 4245 2.120737 GAGTGCACCTAAACCCCGGT 62.121 60.000 14.63 0.00 0.00 5.28
3723 4362 8.534496 CATTTTTCCCATTCTTCTCCAAGTATT 58.466 33.333 0.00 0.00 0.00 1.89
3791 4433 3.621715 GTCGCTGACAAATTAGGTTAGGG 59.378 47.826 10.65 10.65 36.54 3.53
3836 4479 7.883311 TCAGGTGTAAATCCTCTAAAAGAAAGG 59.117 37.037 0.00 0.00 32.37 3.11
4098 4782 7.486647 AGAGATTGCATTTGTGGTGATAAATC 58.513 34.615 0.00 0.00 0.00 2.17
4099 4783 7.414222 AGAGATTGCATTTGTGGTGATAAAT 57.586 32.000 0.00 0.00 0.00 1.40
4333 5026 6.183360 TGTTTTTGTAGCCTGGCTCATTAAAA 60.183 34.615 27.16 22.02 40.44 1.52
4461 5154 7.027874 AGAAATGAGGGTTCTGTAATTACCA 57.972 36.000 13.01 1.71 34.03 3.25
4492 5185 8.928270 AAGAGTAACCAAGACATCTATTTACG 57.072 34.615 0.00 0.00 0.00 3.18
4498 5191 6.630413 GCCATGAAGAGTAACCAAGACATCTA 60.630 42.308 0.00 0.00 0.00 1.98
4545 5239 6.350949 GGGTATCAGCAATTTTGTAACCATGT 60.351 38.462 0.00 0.00 0.00 3.21
4731 5453 8.251026 ACAGAAACAAAATTTAGCTATTAGGGC 58.749 33.333 0.00 0.00 0.00 5.19
4797 5519 5.620205 CGTTACAGAGCTGACTTATCACAGT 60.620 44.000 4.21 0.00 36.62 3.55
4820 5542 2.093306 TGGGTGCAGATTGTCTAACG 57.907 50.000 0.00 0.00 0.00 3.18
4928 5650 7.230849 TGCTCTATTTGTTCAACATTCCATT 57.769 32.000 0.00 0.00 0.00 3.16
4962 5684 6.572119 GCAATGGTGGTGATATTTCAGAAACA 60.572 38.462 0.00 0.00 30.85 2.83
5044 5766 8.485578 AGACTTATATTTAGGAACAGAGGGAG 57.514 38.462 0.00 0.00 0.00 4.30
5045 5767 8.855804 AAGACTTATATTTAGGAACAGAGGGA 57.144 34.615 0.00 0.00 0.00 4.20
5046 5768 9.907229 AAAAGACTTATATTTAGGAACAGAGGG 57.093 33.333 0.00 0.00 0.00 4.30
5074 5796 8.307483 CCGTATGTAGTCCATATTGAAATCTCT 58.693 37.037 0.00 0.00 38.29 3.10
5075 5797 8.304596 TCCGTATGTAGTCCATATTGAAATCTC 58.695 37.037 0.00 0.00 38.29 2.75
5076 5798 8.190326 TCCGTATGTAGTCCATATTGAAATCT 57.810 34.615 0.00 0.00 38.29 2.40
5077 5799 8.873830 CATCCGTATGTAGTCCATATTGAAATC 58.126 37.037 0.00 0.00 38.29 2.17
5078 5800 8.375506 ACATCCGTATGTAGTCCATATTGAAAT 58.624 33.333 0.00 0.00 44.66 2.17
5079 5801 7.732025 ACATCCGTATGTAGTCCATATTGAAA 58.268 34.615 0.00 0.00 44.66 2.69
5080 5802 7.297936 ACATCCGTATGTAGTCCATATTGAA 57.702 36.000 0.00 0.00 44.66 2.69
5081 5803 6.911250 ACATCCGTATGTAGTCCATATTGA 57.089 37.500 0.00 0.00 44.66 2.57
5117 5839 8.296713 GCAAAATGAGTGAACCTACATTCTAAA 58.703 33.333 0.00 0.00 32.84 1.85
5118 5840 7.665559 AGCAAAATGAGTGAACCTACATTCTAA 59.334 33.333 0.00 0.00 32.84 2.10
5119 5841 7.168219 AGCAAAATGAGTGAACCTACATTCTA 58.832 34.615 0.00 0.00 32.84 2.10
5120 5842 6.006449 AGCAAAATGAGTGAACCTACATTCT 58.994 36.000 0.00 0.00 32.84 2.40
5121 5843 6.259550 AGCAAAATGAGTGAACCTACATTC 57.740 37.500 0.00 0.00 32.84 2.67
5122 5844 5.183904 GGAGCAAAATGAGTGAACCTACATT 59.816 40.000 0.00 0.00 34.99 2.71
5123 5845 4.702131 GGAGCAAAATGAGTGAACCTACAT 59.298 41.667 0.00 0.00 0.00 2.29
5124 5846 4.072131 GGAGCAAAATGAGTGAACCTACA 58.928 43.478 0.00 0.00 0.00 2.74
5125 5847 3.125316 CGGAGCAAAATGAGTGAACCTAC 59.875 47.826 0.00 0.00 0.00 3.18
5126 5848 3.244422 ACGGAGCAAAATGAGTGAACCTA 60.244 43.478 0.00 0.00 0.00 3.08
5127 5849 2.154462 CGGAGCAAAATGAGTGAACCT 58.846 47.619 0.00 0.00 0.00 3.50
5128 5850 1.880027 ACGGAGCAAAATGAGTGAACC 59.120 47.619 0.00 0.00 0.00 3.62
5129 5851 4.154195 ACATACGGAGCAAAATGAGTGAAC 59.846 41.667 0.00 0.00 0.00 3.18
5130 5852 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
5131 5853 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
5132 5854 4.260375 GCTACATACGGAGCAAAATGAGTG 60.260 45.833 0.00 0.00 38.62 3.51
5133 5855 3.871594 GCTACATACGGAGCAAAATGAGT 59.128 43.478 0.00 0.00 38.62 3.41
5134 5856 4.122776 AGCTACATACGGAGCAAAATGAG 58.877 43.478 0.00 0.00 41.36 2.90
5135 5857 4.119862 GAGCTACATACGGAGCAAAATGA 58.880 43.478 0.00 0.00 41.36 2.57
5136 5858 3.871006 TGAGCTACATACGGAGCAAAATG 59.129 43.478 0.00 0.00 41.36 2.32
5137 5859 4.137116 TGAGCTACATACGGAGCAAAAT 57.863 40.909 0.00 0.00 41.36 1.82
5138 5860 3.603158 TGAGCTACATACGGAGCAAAA 57.397 42.857 0.00 0.00 41.36 2.44
5139 5861 3.819564 ATGAGCTACATACGGAGCAAA 57.180 42.857 0.00 0.00 41.36 3.68
5140 5862 5.468540 AATATGAGCTACATACGGAGCAA 57.531 39.130 0.00 0.00 43.12 3.91
5141 5863 5.944007 TCTAATATGAGCTACATACGGAGCA 59.056 40.000 0.00 0.00 43.12 4.26
5142 5864 6.438259 TCTAATATGAGCTACATACGGAGC 57.562 41.667 7.69 0.00 43.12 4.70
5143 5865 8.898761 AGATTCTAATATGAGCTACATACGGAG 58.101 37.037 7.69 6.37 43.12 4.63
5144 5866 8.809468 AGATTCTAATATGAGCTACATACGGA 57.191 34.615 7.69 5.08 43.12 4.69
5145 5867 8.898761 AGAGATTCTAATATGAGCTACATACGG 58.101 37.037 7.69 3.43 43.12 4.02
5173 5895 9.868160 CCCTCCATTCCTAAATATAAGTCTTTT 57.132 33.333 0.00 0.00 0.00 2.27
5174 5896 9.237706 TCCCTCCATTCCTAAATATAAGTCTTT 57.762 33.333 0.00 0.00 0.00 2.52
5175 5897 8.814448 TCCCTCCATTCCTAAATATAAGTCTT 57.186 34.615 0.00 0.00 0.00 3.01
5176 5898 7.459444 CCTCCCTCCATTCCTAAATATAAGTCT 59.541 40.741 0.00 0.00 0.00 3.24
5177 5899 7.237887 ACCTCCCTCCATTCCTAAATATAAGTC 59.762 40.741 0.00 0.00 0.00 3.01
5178 5900 7.089566 ACCTCCCTCCATTCCTAAATATAAGT 58.910 38.462 0.00 0.00 0.00 2.24
5179 5901 7.575499 ACCTCCCTCCATTCCTAAATATAAG 57.425 40.000 0.00 0.00 0.00 1.73
5180 5902 7.182206 GCTACCTCCCTCCATTCCTAAATATAA 59.818 40.741 0.00 0.00 0.00 0.98
5181 5903 6.672657 GCTACCTCCCTCCATTCCTAAATATA 59.327 42.308 0.00 0.00 0.00 0.86
5182 5904 5.489278 GCTACCTCCCTCCATTCCTAAATAT 59.511 44.000 0.00 0.00 0.00 1.28
5183 5905 4.844655 GCTACCTCCCTCCATTCCTAAATA 59.155 45.833 0.00 0.00 0.00 1.40
5184 5906 3.653352 GCTACCTCCCTCCATTCCTAAAT 59.347 47.826 0.00 0.00 0.00 1.40
5185 5907 3.046374 GCTACCTCCCTCCATTCCTAAA 58.954 50.000 0.00 0.00 0.00 1.85
5186 5908 2.022428 TGCTACCTCCCTCCATTCCTAA 60.022 50.000 0.00 0.00 0.00 2.69
5187 5909 1.578703 TGCTACCTCCCTCCATTCCTA 59.421 52.381 0.00 0.00 0.00 2.94
5188 5910 0.343372 TGCTACCTCCCTCCATTCCT 59.657 55.000 0.00 0.00 0.00 3.36
5189 5911 0.470341 GTGCTACCTCCCTCCATTCC 59.530 60.000 0.00 0.00 0.00 3.01
5190 5912 1.204146 TGTGCTACCTCCCTCCATTC 58.796 55.000 0.00 0.00 0.00 2.67
5191 5913 1.898863 ATGTGCTACCTCCCTCCATT 58.101 50.000 0.00 0.00 0.00 3.16
5192 5914 2.614259 CTATGTGCTACCTCCCTCCAT 58.386 52.381 0.00 0.00 0.00 3.41
5193 5915 2.034799 GCTATGTGCTACCTCCCTCCA 61.035 57.143 0.00 0.00 38.95 3.86
5194 5916 0.682292 GCTATGTGCTACCTCCCTCC 59.318 60.000 0.00 0.00 38.95 4.30
5195 5917 1.414158 TGCTATGTGCTACCTCCCTC 58.586 55.000 0.00 0.00 43.37 4.30
5196 5918 1.879575 TTGCTATGTGCTACCTCCCT 58.120 50.000 0.00 0.00 43.37 4.20
5197 5919 2.710096 TTTGCTATGTGCTACCTCCC 57.290 50.000 0.00 0.00 43.37 4.30
5232 5954 4.662468 ACAATGCACATGTGGTACAAAA 57.338 36.364 26.55 0.00 44.16 2.44
5243 5965 2.563620 TGGCATGAAGAACAATGCACAT 59.436 40.909 9.59 0.00 41.44 3.21
5266 5988 6.524586 GTGAAAGGCTTGTAAGAATGAATTCG 59.475 38.462 0.00 0.00 41.56 3.34
5456 6178 0.602638 GTTCGGTGTGTGCATCCAGA 60.603 55.000 0.00 0.00 0.00 3.86
5566 6288 0.178873 TCAGGTAGCCCAAGAACCCT 60.179 55.000 0.00 0.00 33.53 4.34
5570 6292 1.668826 ATGGTCAGGTAGCCCAAGAA 58.331 50.000 0.00 0.00 0.00 2.52
5571 6293 1.281867 CAATGGTCAGGTAGCCCAAGA 59.718 52.381 0.00 0.00 0.00 3.02
5572 6294 1.755179 CAATGGTCAGGTAGCCCAAG 58.245 55.000 0.00 0.00 0.00 3.61
5573 6295 0.323360 GCAATGGTCAGGTAGCCCAA 60.323 55.000 0.00 0.00 0.00 4.12
5574 6296 1.207488 AGCAATGGTCAGGTAGCCCA 61.207 55.000 0.00 0.00 0.00 5.36
5575 6297 0.837272 TAGCAATGGTCAGGTAGCCC 59.163 55.000 0.00 0.00 0.00 5.19
5576 6298 2.710096 TTAGCAATGGTCAGGTAGCC 57.290 50.000 0.00 0.00 0.00 3.93
5577 6299 4.640201 TGAATTTAGCAATGGTCAGGTAGC 59.360 41.667 0.00 0.00 0.00 3.58
5578 6300 5.066505 GGTGAATTTAGCAATGGTCAGGTAG 59.933 44.000 0.00 0.00 0.00 3.18
5579 6301 4.947388 GGTGAATTTAGCAATGGTCAGGTA 59.053 41.667 0.00 0.00 0.00 3.08
5673 6395 1.913419 ACAGTTATACCACCACCCCTG 59.087 52.381 0.00 0.00 0.00 4.45
5681 6403 7.169308 CGACCAATTCATCTACAGTTATACCAC 59.831 40.741 0.00 0.00 0.00 4.16
5688 6410 6.282199 ACTACGACCAATTCATCTACAGTT 57.718 37.500 0.00 0.00 0.00 3.16
5706 6428 1.997606 CCAGAAACGGCCTAAACTACG 59.002 52.381 0.00 0.00 0.00 3.51
5793 6520 1.740025 GGCACTGAAGCTATCAACACC 59.260 52.381 0.00 0.00 37.67 4.16
5846 6578 9.906660 CTTGTTTTTATTTTGCTAGTGGTCATA 57.093 29.630 0.00 0.00 0.00 2.15
5875 6663 9.051679 AGTTTTGTAATATCCTTTTGTTTTGCC 57.948 29.630 0.00 0.00 0.00 4.52
5894 6682 3.443329 TGTGCACATGACTGAAGTTTTGT 59.557 39.130 17.42 0.00 0.00 2.83
6063 6886 4.765856 CCTCCTGTACTGTACTGTACTGTT 59.234 45.833 30.96 15.98 42.22 3.16
6084 6907 9.745880 CGTGTTCTTATATCACTGTATAAACCT 57.254 33.333 0.00 0.00 0.00 3.50
6103 6926 3.637229 CAGATACAGATACCCCGTGTTCT 59.363 47.826 0.00 0.00 0.00 3.01
6125 6954 5.386924 AGGACTACTGGACACCATAGATAC 58.613 45.833 0.00 0.00 30.82 2.24
6126 6955 5.664815 AGGACTACTGGACACCATAGATA 57.335 43.478 0.00 0.00 30.82 1.98
6127 6956 4.544564 AGGACTACTGGACACCATAGAT 57.455 45.455 0.00 0.00 30.82 1.98
6128 6957 4.228895 TGTAGGACTACTGGACACCATAGA 59.771 45.833 10.51 0.00 37.00 1.98
6129 6958 4.533815 TGTAGGACTACTGGACACCATAG 58.466 47.826 10.51 0.00 37.00 2.23
6130 6959 4.596354 TGTAGGACTACTGGACACCATA 57.404 45.455 10.51 0.00 37.00 2.74
6228 7057 1.069924 CTCTGAGCAGCTTGTCGACG 61.070 60.000 11.62 0.00 0.00 5.12
6230 7059 0.038801 CACTCTGAGCAGCTTGTCGA 60.039 55.000 4.19 0.00 0.00 4.20
6234 7063 1.575576 GCACCACTCTGAGCAGCTTG 61.576 60.000 4.19 0.00 0.00 4.01
6244 7073 3.177884 TGGCCTTGGCACCACTCT 61.178 61.111 14.04 0.00 31.79 3.24
6272 7101 5.186021 CAGTACCTAGGCAAAGAGAAGAAGA 59.814 44.000 9.30 0.00 0.00 2.87
6300 7129 3.688159 CCGGACCCCGTCGACTTT 61.688 66.667 14.70 0.00 46.80 2.66
6435 7264 2.503061 CTCATCCGGGGACTGCTG 59.497 66.667 0.00 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.