Multiple sequence alignment - TraesCS3A01G156900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G156900 chr3A 100.000 2531 0 0 1 2531 153361219 153363749 0.000000e+00 4674
1 TraesCS3A01G156900 chr3A 98.438 256 2 2 2277 2531 412704037 412703783 1.380000e-122 449
2 TraesCS3A01G156900 chr6A 96.363 2282 74 7 1 2280 182421822 182419548 0.000000e+00 3746
3 TraesCS3A01G156900 chr6A 94.010 2287 109 12 1 2280 137494905 137492640 0.000000e+00 3439
4 TraesCS3A01G156900 chr3B 95.797 2284 92 3 1 2280 473234221 473236504 0.000000e+00 3683
5 TraesCS3A01G156900 chr7A 95.363 2286 99 6 1 2280 126147079 126149363 0.000000e+00 3627
6 TraesCS3A01G156900 chr7A 97.692 260 5 1 2272 2531 147268005 147267747 1.790000e-121 446
7 TraesCS3A01G156900 chr2A 95.443 2282 80 4 1 2280 778647326 778649585 0.000000e+00 3616
8 TraesCS3A01G156900 chr7B 95.092 2282 106 5 1 2280 51882339 51884616 0.000000e+00 3589
9 TraesCS3A01G156900 chr6B 94.958 2281 95 6 1 2280 48078039 48080300 0.000000e+00 3557
10 TraesCS3A01G156900 chr4B 94.221 2284 126 5 1 2280 321540569 321542850 0.000000e+00 3482
11 TraesCS3A01G156900 chr4B 94.149 2222 117 9 1 2213 587096930 587099147 0.000000e+00 3371
12 TraesCS3A01G156900 chr6D 98.444 257 4 0 2275 2531 349719288 349719032 1.070000e-123 453
13 TraesCS3A01G156900 chr6D 97.692 260 6 0 2272 2531 408724641 408724900 4.970000e-122 448
14 TraesCS3A01G156900 chr2D 98.431 255 4 0 2277 2531 408937904 408937650 1.380000e-122 449
15 TraesCS3A01G156900 chr1B 97.358 265 5 2 2268 2531 310783170 310782907 1.380000e-122 449
16 TraesCS3A01G156900 chr3D 97.328 262 5 1 2270 2531 61878945 61878686 6.420000e-121 444
17 TraesCS3A01G156900 chr3D 96.629 267 7 2 2266 2531 346205851 346206116 2.310000e-120 442
18 TraesCS3A01G156900 chr7D 95.941 271 8 3 2262 2531 113496525 113496257 1.080000e-118 436


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G156900 chr3A 153361219 153363749 2530 False 4674 4674 100.000 1 2531 1 chr3A.!!$F1 2530
1 TraesCS3A01G156900 chr6A 182419548 182421822 2274 True 3746 3746 96.363 1 2280 1 chr6A.!!$R2 2279
2 TraesCS3A01G156900 chr6A 137492640 137494905 2265 True 3439 3439 94.010 1 2280 1 chr6A.!!$R1 2279
3 TraesCS3A01G156900 chr3B 473234221 473236504 2283 False 3683 3683 95.797 1 2280 1 chr3B.!!$F1 2279
4 TraesCS3A01G156900 chr7A 126147079 126149363 2284 False 3627 3627 95.363 1 2280 1 chr7A.!!$F1 2279
5 TraesCS3A01G156900 chr2A 778647326 778649585 2259 False 3616 3616 95.443 1 2280 1 chr2A.!!$F1 2279
6 TraesCS3A01G156900 chr7B 51882339 51884616 2277 False 3589 3589 95.092 1 2280 1 chr7B.!!$F1 2279
7 TraesCS3A01G156900 chr6B 48078039 48080300 2261 False 3557 3557 94.958 1 2280 1 chr6B.!!$F1 2279
8 TraesCS3A01G156900 chr4B 321540569 321542850 2281 False 3482 3482 94.221 1 2280 1 chr4B.!!$F1 2279
9 TraesCS3A01G156900 chr4B 587096930 587099147 2217 False 3371 3371 94.149 1 2213 1 chr4B.!!$F2 2212

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
777 789 0.539986 GGTTGTCCCGCTCATTCCTA 59.46 55.0 0.0 0.0 0.0 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1742 1764 0.10409 ACCCTCCCAACCAGGTAGTT 60.104 55.0 0.0 0.0 34.66 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 0.663568 CGTTCTTGCCGTCGAGAAGT 60.664 55.000 0.00 0.00 41.96 3.01
113 114 7.179269 AGGTTAGGGCTAAACATCATTTACAA 58.821 34.615 0.00 0.00 35.28 2.41
331 333 1.678101 TCGAGCGTCACTCATGATGAT 59.322 47.619 0.00 0.00 46.63 2.45
373 375 7.629222 GCAAGGATGACTTAACTGCACATATTT 60.629 37.037 0.00 0.00 37.29 1.40
376 378 8.486210 AGGATGACTTAACTGCACATATTTCTA 58.514 33.333 0.00 0.00 0.00 2.10
590 601 6.939730 TGCCACTTATTTACACTCTTTGATCA 59.060 34.615 0.00 0.00 0.00 2.92
727 739 2.961526 TCGCTTATCAACCTCCACTC 57.038 50.000 0.00 0.00 0.00 3.51
766 778 0.604511 AACGGTTCATCGGTTGTCCC 60.605 55.000 0.00 0.00 38.00 4.46
777 789 0.539986 GGTTGTCCCGCTCATTCCTA 59.460 55.000 0.00 0.00 0.00 2.94
891 905 6.129009 GCAACAACAAGCAATGATAAGAACAG 60.129 38.462 0.00 0.00 0.00 3.16
1023 1039 1.814169 CCGTCTTCCCTTAAGCGCC 60.814 63.158 2.29 0.00 35.06 6.53
1241 1257 6.551601 AGTCAACTTCGTATGGATAGGAGAAT 59.448 38.462 0.00 0.00 0.00 2.40
1271 1287 8.473219 TCATATATTATGTGAGATGGTGAGAGC 58.527 37.037 0.00 0.00 0.00 4.09
1430 1446 5.703130 GGAACTTCAATGCTTGTCTTCTAGT 59.297 40.000 0.00 0.00 0.00 2.57
1492 1508 1.067212 CTATACCCGAGGACTGCACAC 59.933 57.143 0.00 0.00 0.00 3.82
1742 1764 6.676950 CACCTAACATGCAGTTCATTTACAA 58.323 36.000 5.04 0.00 41.64 2.41
1776 1798 0.682209 AGGGTTCTGCACATGATGGC 60.682 55.000 0.00 0.22 0.00 4.40
1823 1845 1.459455 CCAAATGGGTTGCGTGTCCA 61.459 55.000 0.00 0.00 35.74 4.02
1921 1943 0.850100 TCACTTGGGTGGTTGGACAT 59.150 50.000 0.00 0.00 43.17 3.06
1944 1966 1.445582 GAACCCACCTCGTAGTGCG 60.446 63.158 0.00 0.00 43.01 5.34
2031 2053 0.322546 AGGGTCAGTGGGCGATTTTC 60.323 55.000 0.00 0.00 0.00 2.29
2146 2172 2.501723 ACCCACTTGATAATGACGAGCT 59.498 45.455 0.00 0.00 0.00 4.09
2280 2306 6.758886 GCAGGACATGTATAATAGACATAGGC 59.241 42.308 0.00 0.00 35.75 3.93
2281 2307 7.579531 GCAGGACATGTATAATAGACATAGGCA 60.580 40.741 0.00 0.00 35.75 4.75
2282 2308 7.761704 CAGGACATGTATAATAGACATAGGCAC 59.238 40.741 0.00 0.00 35.75 5.01
2283 2309 7.676043 AGGACATGTATAATAGACATAGGCACT 59.324 37.037 0.00 0.00 46.37 4.40
2312 2338 6.583912 AAAATACACTTCCGTGATGATACG 57.416 37.500 0.00 0.00 43.97 3.06
2313 2339 4.913335 ATACACTTCCGTGATGATACGT 57.087 40.909 0.00 0.00 43.97 3.57
2314 2340 2.876091 ACACTTCCGTGATGATACGTG 58.124 47.619 0.00 0.00 43.97 4.49
2315 2341 2.230508 ACACTTCCGTGATGATACGTGT 59.769 45.455 0.00 0.00 43.97 4.49
2316 2342 3.250744 CACTTCCGTGATGATACGTGTT 58.749 45.455 0.00 0.00 43.97 3.32
2317 2343 3.678072 CACTTCCGTGATGATACGTGTTT 59.322 43.478 0.00 0.00 43.97 2.83
2318 2344 3.678072 ACTTCCGTGATGATACGTGTTTG 59.322 43.478 0.00 0.00 42.24 2.93
2319 2345 3.306917 TCCGTGATGATACGTGTTTGT 57.693 42.857 0.00 0.00 42.24 2.83
2320 2346 3.247442 TCCGTGATGATACGTGTTTGTC 58.753 45.455 0.00 0.00 42.24 3.18
2321 2347 2.990514 CCGTGATGATACGTGTTTGTCA 59.009 45.455 0.00 0.00 42.24 3.58
2322 2348 3.181534 CCGTGATGATACGTGTTTGTCAC 60.182 47.826 0.00 6.93 42.24 3.67
2323 2349 3.427193 CGTGATGATACGTGTTTGTCACA 59.573 43.478 18.33 0.60 46.44 3.58
2324 2350 4.432892 CGTGATGATACGTGTTTGTCACAG 60.433 45.833 18.33 11.29 46.44 3.66
2325 2351 4.447724 GTGATGATACGTGTTTGTCACAGT 59.552 41.667 15.50 0.00 46.44 3.55
2326 2352 5.631929 GTGATGATACGTGTTTGTCACAGTA 59.368 40.000 15.50 0.00 46.44 2.74
2327 2353 5.861787 TGATGATACGTGTTTGTCACAGTAG 59.138 40.000 0.00 0.00 46.44 2.57
2328 2354 4.552355 TGATACGTGTTTGTCACAGTAGG 58.448 43.478 0.00 0.00 46.44 3.18
2329 2355 2.973694 ACGTGTTTGTCACAGTAGGT 57.026 45.000 0.00 0.00 46.44 3.08
2330 2356 2.817901 ACGTGTTTGTCACAGTAGGTC 58.182 47.619 0.00 0.00 46.44 3.85
2331 2357 1.784856 CGTGTTTGTCACAGTAGGTCG 59.215 52.381 0.00 0.00 46.44 4.79
2332 2358 1.525619 GTGTTTGTCACAGTAGGTCGC 59.474 52.381 0.00 0.00 45.51 5.19
2333 2359 1.411246 TGTTTGTCACAGTAGGTCGCT 59.589 47.619 0.00 0.00 0.00 4.93
2334 2360 2.159014 TGTTTGTCACAGTAGGTCGCTT 60.159 45.455 0.00 0.00 0.00 4.68
2335 2361 2.870411 GTTTGTCACAGTAGGTCGCTTT 59.130 45.455 0.00 0.00 0.00 3.51
2336 2362 2.902705 TGTCACAGTAGGTCGCTTTT 57.097 45.000 0.00 0.00 0.00 2.27
2337 2363 3.188159 TGTCACAGTAGGTCGCTTTTT 57.812 42.857 0.00 0.00 0.00 1.94
2357 2383 5.718724 TTTTTGTCATGCATGTACATCCA 57.281 34.783 25.43 2.99 0.00 3.41
2358 2384 5.918426 TTTTGTCATGCATGTACATCCAT 57.082 34.783 25.43 6.44 0.00 3.41
2359 2385 4.904253 TTGTCATGCATGTACATCCATG 57.096 40.909 27.23 27.23 44.07 3.66
2360 2386 4.153673 TGTCATGCATGTACATCCATGA 57.846 40.909 30.25 30.25 43.99 3.07
2362 2388 4.153673 TCATGCATGTACATCCATGACA 57.846 40.909 30.25 15.42 43.99 3.58
2363 2389 4.525024 TCATGCATGTACATCCATGACAA 58.475 39.130 30.25 14.80 43.99 3.18
2364 2390 4.948621 TCATGCATGTACATCCATGACAAA 59.051 37.500 30.25 14.49 43.99 2.83
2365 2391 5.595133 TCATGCATGTACATCCATGACAAAT 59.405 36.000 30.25 0.02 43.99 2.32
2366 2392 5.918426 TGCATGTACATCCATGACAAATT 57.082 34.783 5.07 0.00 43.99 1.82
2367 2393 6.283544 TGCATGTACATCCATGACAAATTT 57.716 33.333 5.07 0.00 43.99 1.82
2368 2394 7.401955 TGCATGTACATCCATGACAAATTTA 57.598 32.000 5.07 0.00 43.99 1.40
2369 2395 8.009622 TGCATGTACATCCATGACAAATTTAT 57.990 30.769 5.07 0.00 43.99 1.40
2370 2396 7.921745 TGCATGTACATCCATGACAAATTTATG 59.078 33.333 5.07 0.00 43.99 1.90
2371 2397 8.136800 GCATGTACATCCATGACAAATTTATGA 58.863 33.333 5.07 0.00 43.99 2.15
2372 2398 9.454585 CATGTACATCCATGACAAATTTATGAC 57.545 33.333 5.07 0.00 43.99 3.06
2373 2399 8.572855 TGTACATCCATGACAAATTTATGACA 57.427 30.769 0.00 0.00 0.00 3.58
2374 2400 8.676401 TGTACATCCATGACAAATTTATGACAG 58.324 33.333 0.00 0.00 0.00 3.51
2375 2401 7.943079 ACATCCATGACAAATTTATGACAGA 57.057 32.000 0.00 0.00 0.00 3.41
2376 2402 7.765307 ACATCCATGACAAATTTATGACAGAC 58.235 34.615 0.00 0.00 0.00 3.51
2377 2403 7.613022 ACATCCATGACAAATTTATGACAGACT 59.387 33.333 0.00 0.00 0.00 3.24
2378 2404 7.615582 TCCATGACAAATTTATGACAGACTC 57.384 36.000 0.00 0.00 0.00 3.36
2379 2405 7.167535 TCCATGACAAATTTATGACAGACTCA 58.832 34.615 0.00 0.00 0.00 3.41
2380 2406 7.665145 TCCATGACAAATTTATGACAGACTCAA 59.335 33.333 0.00 0.00 30.60 3.02
2381 2407 7.966753 CCATGACAAATTTATGACAGACTCAAG 59.033 37.037 0.00 0.00 30.60 3.02
2382 2408 8.724229 CATGACAAATTTATGACAGACTCAAGA 58.276 33.333 0.00 0.00 30.60 3.02
2383 2409 8.853077 TGACAAATTTATGACAGACTCAAGAT 57.147 30.769 0.00 0.00 30.60 2.40
2384 2410 9.942850 TGACAAATTTATGACAGACTCAAGATA 57.057 29.630 0.00 0.00 30.60 1.98
2386 2412 9.950496 ACAAATTTATGACAGACTCAAGATAGT 57.050 29.630 0.00 0.00 30.60 2.12
2392 2418 6.701145 TGACAGACTCAAGATAGTCATACC 57.299 41.667 6.76 0.00 46.89 2.73
2393 2419 6.427441 TGACAGACTCAAGATAGTCATACCT 58.573 40.000 6.76 0.00 46.89 3.08
2394 2420 6.319911 TGACAGACTCAAGATAGTCATACCTG 59.680 42.308 6.76 0.00 46.89 4.00
2395 2421 6.191315 ACAGACTCAAGATAGTCATACCTGT 58.809 40.000 6.76 0.00 46.89 4.00
2396 2422 6.096141 ACAGACTCAAGATAGTCATACCTGTG 59.904 42.308 6.76 0.00 46.89 3.66
2397 2423 5.068460 AGACTCAAGATAGTCATACCTGTGC 59.932 44.000 6.76 0.00 46.89 4.57
2398 2424 4.959210 ACTCAAGATAGTCATACCTGTGCT 59.041 41.667 0.00 0.00 0.00 4.40
2399 2425 5.163468 ACTCAAGATAGTCATACCTGTGCTG 60.163 44.000 0.00 0.00 0.00 4.41
2400 2426 4.711846 TCAAGATAGTCATACCTGTGCTGT 59.288 41.667 0.00 0.00 0.00 4.40
2401 2427 4.927978 AGATAGTCATACCTGTGCTGTC 57.072 45.455 0.00 0.00 0.00 3.51
2402 2428 3.316588 AGATAGTCATACCTGTGCTGTCG 59.683 47.826 0.00 0.00 0.00 4.35
2403 2429 1.257743 AGTCATACCTGTGCTGTCGT 58.742 50.000 0.00 0.00 0.00 4.34
2404 2430 2.443416 AGTCATACCTGTGCTGTCGTA 58.557 47.619 0.00 0.00 0.00 3.43
2405 2431 2.423892 AGTCATACCTGTGCTGTCGTAG 59.576 50.000 0.00 0.00 0.00 3.51
2406 2432 2.422479 GTCATACCTGTGCTGTCGTAGA 59.578 50.000 0.00 0.00 0.00 2.59
2407 2433 3.086282 TCATACCTGTGCTGTCGTAGAA 58.914 45.455 0.00 0.00 39.69 2.10
2408 2434 3.128764 TCATACCTGTGCTGTCGTAGAAG 59.871 47.826 0.00 0.00 39.69 2.85
2409 2435 1.329256 ACCTGTGCTGTCGTAGAAGT 58.671 50.000 0.00 0.00 39.69 3.01
2410 2436 1.000163 ACCTGTGCTGTCGTAGAAGTG 60.000 52.381 0.00 0.00 39.69 3.16
2411 2437 1.000163 CCTGTGCTGTCGTAGAAGTGT 60.000 52.381 0.00 0.00 39.69 3.55
2412 2438 2.545952 CCTGTGCTGTCGTAGAAGTGTT 60.546 50.000 0.00 0.00 39.69 3.32
2413 2439 2.726760 CTGTGCTGTCGTAGAAGTGTTC 59.273 50.000 0.00 0.00 39.69 3.18
2414 2440 2.059541 GTGCTGTCGTAGAAGTGTTCC 58.940 52.381 0.00 0.00 39.69 3.62
2415 2441 1.684450 TGCTGTCGTAGAAGTGTTCCA 59.316 47.619 0.00 0.00 39.69 3.53
2416 2442 2.299013 TGCTGTCGTAGAAGTGTTCCAT 59.701 45.455 0.00 0.00 39.69 3.41
2417 2443 2.668457 GCTGTCGTAGAAGTGTTCCATG 59.332 50.000 0.00 0.00 39.69 3.66
2418 2444 3.614150 GCTGTCGTAGAAGTGTTCCATGA 60.614 47.826 0.00 0.00 39.69 3.07
2419 2445 3.909430 TGTCGTAGAAGTGTTCCATGAC 58.091 45.455 0.00 1.80 39.69 3.06
2420 2446 3.319689 TGTCGTAGAAGTGTTCCATGACA 59.680 43.478 6.17 6.17 42.33 3.58
2421 2447 4.021456 TGTCGTAGAAGTGTTCCATGACAT 60.021 41.667 6.17 0.00 40.63 3.06
2422 2448 4.929808 GTCGTAGAAGTGTTCCATGACATT 59.070 41.667 0.00 0.00 39.69 2.71
2423 2449 6.097356 GTCGTAGAAGTGTTCCATGACATTA 58.903 40.000 0.00 0.00 39.69 1.90
2424 2450 6.034683 GTCGTAGAAGTGTTCCATGACATTAC 59.965 42.308 0.00 0.00 39.69 1.89
2425 2451 5.291128 CGTAGAAGTGTTCCATGACATTACC 59.709 44.000 0.00 0.00 0.00 2.85
2426 2452 5.241403 AGAAGTGTTCCATGACATTACCA 57.759 39.130 0.00 0.00 0.00 3.25
2427 2453 5.630121 AGAAGTGTTCCATGACATTACCAA 58.370 37.500 0.00 0.00 0.00 3.67
2428 2454 6.068010 AGAAGTGTTCCATGACATTACCAAA 58.932 36.000 0.00 0.00 0.00 3.28
2429 2455 6.549364 AGAAGTGTTCCATGACATTACCAAAA 59.451 34.615 0.00 0.00 0.00 2.44
2430 2456 6.916360 AGTGTTCCATGACATTACCAAAAT 57.084 33.333 0.00 0.00 0.00 1.82
2431 2457 7.301868 AGTGTTCCATGACATTACCAAAATT 57.698 32.000 0.00 0.00 0.00 1.82
2432 2458 8.415950 AGTGTTCCATGACATTACCAAAATTA 57.584 30.769 0.00 0.00 0.00 1.40
2433 2459 9.034800 AGTGTTCCATGACATTACCAAAATTAT 57.965 29.630 0.00 0.00 0.00 1.28
2434 2460 9.301153 GTGTTCCATGACATTACCAAAATTATC 57.699 33.333 0.00 0.00 0.00 1.75
2435 2461 9.029368 TGTTCCATGACATTACCAAAATTATCA 57.971 29.630 0.00 0.00 0.00 2.15
2438 2464 9.418839 TCCATGACATTACCAAAATTATCATCA 57.581 29.630 0.00 0.00 0.00 3.07
2439 2465 9.467258 CCATGACATTACCAAAATTATCATCAC 57.533 33.333 0.00 0.00 0.00 3.06
2440 2466 9.172820 CATGACATTACCAAAATTATCATCACG 57.827 33.333 0.00 0.00 0.00 4.35
2441 2467 7.702386 TGACATTACCAAAATTATCATCACGG 58.298 34.615 0.00 0.00 0.00 4.94
2442 2468 7.554476 TGACATTACCAAAATTATCATCACGGA 59.446 33.333 0.00 0.00 0.00 4.69
2443 2469 8.287439 ACATTACCAAAATTATCATCACGGAA 57.713 30.769 0.00 0.00 0.00 4.30
2444 2470 8.405531 ACATTACCAAAATTATCATCACGGAAG 58.594 33.333 0.00 0.00 0.00 3.46
2465 2491 5.698741 AGTGTCCACTTCCATGATGATAA 57.301 39.130 0.00 0.00 38.83 1.75
2466 2492 6.065976 AGTGTCCACTTCCATGATGATAAA 57.934 37.500 0.00 0.00 38.83 1.40
2467 2493 6.666678 AGTGTCCACTTCCATGATGATAAAT 58.333 36.000 0.00 0.00 38.83 1.40
2468 2494 6.769822 AGTGTCCACTTCCATGATGATAAATC 59.230 38.462 0.00 0.00 38.83 2.17
2469 2495 5.759763 TGTCCACTTCCATGATGATAAATCG 59.240 40.000 0.00 0.00 0.00 3.34
2470 2496 4.756642 TCCACTTCCATGATGATAAATCGC 59.243 41.667 0.00 0.00 0.00 4.58
2471 2497 4.377738 CCACTTCCATGATGATAAATCGCG 60.378 45.833 0.00 0.00 0.00 5.87
2472 2498 3.187227 ACTTCCATGATGATAAATCGCGC 59.813 43.478 0.00 0.00 0.00 6.86
2473 2499 1.726248 TCCATGATGATAAATCGCGCG 59.274 47.619 26.76 26.76 0.00 6.86
2474 2500 1.460743 CCATGATGATAAATCGCGCGT 59.539 47.619 30.98 13.76 0.00 6.01
2475 2501 2.472886 CCATGATGATAAATCGCGCGTC 60.473 50.000 30.98 19.79 0.00 5.19
2476 2502 1.846541 TGATGATAAATCGCGCGTCA 58.153 45.000 30.98 24.94 0.00 4.35
2477 2503 1.521006 TGATGATAAATCGCGCGTCAC 59.479 47.619 30.98 18.20 0.00 3.67
2478 2504 1.521006 GATGATAAATCGCGCGTCACA 59.479 47.619 30.98 20.52 0.00 3.58
2479 2505 0.920664 TGATAAATCGCGCGTCACAG 59.079 50.000 30.98 0.00 0.00 3.66
2480 2506 1.197055 GATAAATCGCGCGTCACAGA 58.803 50.000 30.98 9.80 0.00 3.41
2481 2507 1.586578 GATAAATCGCGCGTCACAGAA 59.413 47.619 30.98 8.92 0.00 3.02
2482 2508 0.989164 TAAATCGCGCGTCACAGAAG 59.011 50.000 30.98 0.00 0.00 2.85
2483 2509 0.944311 AAATCGCGCGTCACAGAAGT 60.944 50.000 30.98 4.30 0.00 3.01
2485 2511 4.415501 CGCGCGTCACAGAAGTGC 62.416 66.667 24.19 8.13 45.49 4.40
2486 2512 3.038417 GCGCGTCACAGAAGTGCT 61.038 61.111 8.43 0.00 45.49 4.40
2487 2513 2.598632 GCGCGTCACAGAAGTGCTT 61.599 57.895 8.43 0.00 45.49 3.91
2488 2514 1.934463 CGCGTCACAGAAGTGCTTT 59.066 52.632 0.00 0.00 45.49 3.51
2489 2515 0.111089 CGCGTCACAGAAGTGCTTTC 60.111 55.000 0.00 0.00 45.49 2.62
2490 2516 0.111089 GCGTCACAGAAGTGCTTTCG 60.111 55.000 0.00 0.00 45.49 3.46
2491 2517 1.209128 CGTCACAGAAGTGCTTTCGT 58.791 50.000 0.00 0.00 45.49 3.85
2492 2518 1.190323 CGTCACAGAAGTGCTTTCGTC 59.810 52.381 0.00 0.00 45.49 4.20
2493 2519 2.201732 GTCACAGAAGTGCTTTCGTCA 58.798 47.619 0.00 0.00 45.49 4.35
2494 2520 2.607635 GTCACAGAAGTGCTTTCGTCAA 59.392 45.455 0.00 0.00 45.49 3.18
2495 2521 2.866156 TCACAGAAGTGCTTTCGTCAAG 59.134 45.455 0.00 0.00 45.49 3.02
2496 2522 2.032549 CACAGAAGTGCTTTCGTCAAGG 60.033 50.000 0.00 0.00 40.86 3.61
2497 2523 1.532868 CAGAAGTGCTTTCGTCAAGGG 59.467 52.381 0.00 0.00 40.86 3.95
2498 2524 1.141053 AGAAGTGCTTTCGTCAAGGGT 59.859 47.619 0.00 0.00 40.86 4.34
2499 2525 1.264288 GAAGTGCTTTCGTCAAGGGTG 59.736 52.381 0.00 0.00 32.37 4.61
2500 2526 0.468226 AGTGCTTTCGTCAAGGGTGA 59.532 50.000 0.00 0.00 32.37 4.02
2514 2540 2.357034 GTGACCGACACGTGGCAT 60.357 61.111 23.63 8.84 39.78 4.40
2515 2541 2.048597 TGACCGACACGTGGCATC 60.049 61.111 23.63 18.45 0.00 3.91
2516 2542 2.813908 GACCGACACGTGGCATCC 60.814 66.667 23.63 5.09 0.00 3.51
2517 2543 3.583276 GACCGACACGTGGCATCCA 62.583 63.158 23.63 0.00 0.00 3.41
2526 2552 4.975132 TGGCATCCACCATAACGG 57.025 55.556 0.00 0.00 42.50 4.44
2527 2553 2.302019 TGGCATCCACCATAACGGA 58.698 52.632 0.00 0.00 38.63 4.69
2528 2554 0.621082 TGGCATCCACCATAACGGAA 59.379 50.000 0.00 0.00 38.63 4.30
2529 2555 1.021968 GGCATCCACCATAACGGAAC 58.978 55.000 0.00 0.00 38.63 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
310 312 5.320228 CAATCATCATGAGTGACGCTCGAT 61.320 45.833 9.58 6.13 44.38 3.59
311 313 4.037463 CAATCATCATGAGTGACGCTCGA 61.037 47.826 9.58 4.04 44.38 4.04
331 333 3.825585 TCCTTGCAATTGTAGCATGACAA 59.174 39.130 7.40 0.00 42.33 3.18
373 375 7.732025 TCAGTTAACTCAATCTGGTTTGTAGA 58.268 34.615 4.77 0.00 0.00 2.59
376 378 6.601613 TGTTCAGTTAACTCAATCTGGTTTGT 59.398 34.615 4.77 0.00 38.99 2.83
440 443 9.189156 AGCAACATATATAAACAGGACACAAAT 57.811 29.630 0.00 0.00 0.00 2.32
727 739 5.689961 CCGTTGTTGGGAAAAAGAATGTTAG 59.310 40.000 0.00 0.00 0.00 2.34
766 778 0.610687 GGGGAGGATAGGAATGAGCG 59.389 60.000 0.00 0.00 0.00 5.03
777 789 2.078665 CCAACCGATGGGGGAGGAT 61.079 63.158 0.00 0.00 46.27 3.24
891 905 9.890629 TGGGTGAAGTAAATATATGATAGCATC 57.109 33.333 0.00 0.00 35.94 3.91
1023 1039 4.030753 GCTACATTTCTTCTTCGACGTCTG 59.969 45.833 14.70 7.51 0.00 3.51
1271 1287 1.000896 CCCCTTAGGCCACCAACAG 60.001 63.158 5.01 0.00 0.00 3.16
1365 1381 5.163683 GCTTCGGTAAAAGAATTTCCCTACC 60.164 44.000 8.25 8.25 37.28 3.18
1430 1446 4.751098 GCAATGGATGAAGCTTCAAAACAA 59.249 37.500 31.55 19.27 41.13 2.83
1713 1732 2.205022 ACTGCATGTTAGGTGCACAT 57.795 45.000 20.43 15.34 46.76 3.21
1723 1744 7.014230 AGGTAGTTTGTAAATGAACTGCATGTT 59.986 33.333 0.00 1.82 42.38 2.71
1742 1764 0.104090 ACCCTCCCAACCAGGTAGTT 60.104 55.000 0.00 0.00 34.66 2.24
1776 1798 2.672961 TGGCATCTCTAAGAACACGG 57.327 50.000 0.00 0.00 0.00 4.94
1853 1875 7.406799 AAAAATCCTTTCGCATTTGTGTAAG 57.593 32.000 4.16 4.16 34.21 2.34
1921 1943 1.254026 CTACGAGGTGGGTTCTGTGA 58.746 55.000 0.00 0.00 0.00 3.58
1944 1966 3.614390 GCCGCATGTTATAGTACTCCTCC 60.614 52.174 0.00 0.00 0.00 4.30
2115 2141 2.192861 CAAGTGGGTCAAGCGGCAA 61.193 57.895 1.45 0.00 0.00 4.52
2146 2172 9.249053 TGCCTTCCAATGTTTCTTGTATTATTA 57.751 29.630 0.00 0.00 0.00 0.98
2297 2323 3.678072 ACAAACACGTATCATCACGGAAG 59.322 43.478 0.00 0.00 46.12 3.46
2298 2324 3.655486 ACAAACACGTATCATCACGGAA 58.345 40.909 0.00 0.00 46.12 4.30
2299 2325 3.247442 GACAAACACGTATCATCACGGA 58.753 45.455 0.00 0.00 46.12 4.69
2300 2326 2.990514 TGACAAACACGTATCATCACGG 59.009 45.455 0.00 0.00 46.12 4.94
2313 2339 1.411246 AGCGACCTACTGTGACAAACA 59.589 47.619 0.00 0.00 37.22 2.83
2314 2340 2.150397 AGCGACCTACTGTGACAAAC 57.850 50.000 0.00 0.00 0.00 2.93
2315 2341 2.902705 AAGCGACCTACTGTGACAAA 57.097 45.000 0.00 0.00 0.00 2.83
2316 2342 2.902705 AAAGCGACCTACTGTGACAA 57.097 45.000 0.00 0.00 0.00 3.18
2317 2343 2.902705 AAAAGCGACCTACTGTGACA 57.097 45.000 0.00 0.00 0.00 3.58
2335 2361 5.718724 TGGATGTACATGCATGACAAAAA 57.281 34.783 32.75 16.53 34.14 1.94
2336 2362 5.918426 ATGGATGTACATGCATGACAAAA 57.082 34.783 33.87 18.90 46.05 2.44
2344 2370 5.918426 AATTTGTCATGGATGTACATGCA 57.082 34.783 29.03 29.03 46.02 3.96
2345 2371 8.136800 TCATAAATTTGTCATGGATGTACATGC 58.863 33.333 19.53 19.53 46.02 4.06
2347 2373 9.187996 TGTCATAAATTTGTCATGGATGTACAT 57.812 29.630 8.43 8.43 0.00 2.29
2348 2374 8.572855 TGTCATAAATTTGTCATGGATGTACA 57.427 30.769 0.00 0.00 0.00 2.90
2349 2375 8.892723 TCTGTCATAAATTTGTCATGGATGTAC 58.107 33.333 0.00 0.00 0.00 2.90
2350 2376 8.892723 GTCTGTCATAAATTTGTCATGGATGTA 58.107 33.333 0.00 0.00 0.00 2.29
2351 2377 7.613022 AGTCTGTCATAAATTTGTCATGGATGT 59.387 33.333 0.00 0.00 0.00 3.06
2352 2378 7.993101 AGTCTGTCATAAATTTGTCATGGATG 58.007 34.615 0.00 0.00 0.00 3.51
2353 2379 7.830697 TGAGTCTGTCATAAATTTGTCATGGAT 59.169 33.333 0.00 0.00 0.00 3.41
2354 2380 7.167535 TGAGTCTGTCATAAATTTGTCATGGA 58.832 34.615 0.00 0.00 0.00 3.41
2355 2381 7.381766 TGAGTCTGTCATAAATTTGTCATGG 57.618 36.000 0.00 0.00 0.00 3.66
2356 2382 8.724229 TCTTGAGTCTGTCATAAATTTGTCATG 58.276 33.333 0.00 0.00 34.17 3.07
2357 2383 8.853077 TCTTGAGTCTGTCATAAATTTGTCAT 57.147 30.769 0.00 0.00 34.17 3.06
2358 2384 8.853077 ATCTTGAGTCTGTCATAAATTTGTCA 57.147 30.769 0.00 0.00 34.17 3.58
2360 2386 9.950496 ACTATCTTGAGTCTGTCATAAATTTGT 57.050 29.630 0.00 0.00 34.17 2.83
2366 2392 8.851145 GGTATGACTATCTTGAGTCTGTCATAA 58.149 37.037 13.03 0.00 45.21 1.90
2367 2393 8.221251 AGGTATGACTATCTTGAGTCTGTCATA 58.779 37.037 8.86 8.86 45.21 2.15
2368 2394 7.014134 CAGGTATGACTATCTTGAGTCTGTCAT 59.986 40.741 10.54 10.54 45.21 3.06
2369 2395 6.319911 CAGGTATGACTATCTTGAGTCTGTCA 59.680 42.308 5.26 0.00 45.21 3.58
2370 2396 6.320164 ACAGGTATGACTATCTTGAGTCTGTC 59.680 42.308 5.26 0.00 45.21 3.51
2371 2397 6.096141 CACAGGTATGACTATCTTGAGTCTGT 59.904 42.308 5.26 0.00 45.21 3.41
2372 2398 6.502652 CACAGGTATGACTATCTTGAGTCTG 58.497 44.000 5.26 0.00 45.21 3.51
2373 2399 5.068460 GCACAGGTATGACTATCTTGAGTCT 59.932 44.000 5.26 0.00 45.21 3.24
2374 2400 5.068460 AGCACAGGTATGACTATCTTGAGTC 59.932 44.000 0.00 0.00 45.19 3.36
2375 2401 4.959210 AGCACAGGTATGACTATCTTGAGT 59.041 41.667 0.00 0.00 0.00 3.41
2376 2402 5.163468 ACAGCACAGGTATGACTATCTTGAG 60.163 44.000 0.00 0.00 0.00 3.02
2377 2403 4.711846 ACAGCACAGGTATGACTATCTTGA 59.288 41.667 0.00 0.00 0.00 3.02
2378 2404 5.016051 ACAGCACAGGTATGACTATCTTG 57.984 43.478 0.00 0.00 0.00 3.02
2379 2405 4.202060 CGACAGCACAGGTATGACTATCTT 60.202 45.833 0.00 0.00 0.00 2.40
2380 2406 3.316588 CGACAGCACAGGTATGACTATCT 59.683 47.826 0.00 0.00 0.00 1.98
2381 2407 3.066900 ACGACAGCACAGGTATGACTATC 59.933 47.826 0.00 0.00 0.00 2.08
2382 2408 3.024547 ACGACAGCACAGGTATGACTAT 58.975 45.455 0.00 0.00 0.00 2.12
2383 2409 2.443416 ACGACAGCACAGGTATGACTA 58.557 47.619 0.00 0.00 0.00 2.59
2384 2410 1.257743 ACGACAGCACAGGTATGACT 58.742 50.000 0.00 0.00 0.00 3.41
2385 2411 2.422479 TCTACGACAGCACAGGTATGAC 59.578 50.000 0.00 0.00 0.00 3.06
2386 2412 2.718563 TCTACGACAGCACAGGTATGA 58.281 47.619 0.00 0.00 0.00 2.15
2387 2413 3.119459 ACTTCTACGACAGCACAGGTATG 60.119 47.826 0.00 0.00 0.00 2.39
2388 2414 3.090037 ACTTCTACGACAGCACAGGTAT 58.910 45.455 0.00 0.00 0.00 2.73
2389 2415 2.228103 CACTTCTACGACAGCACAGGTA 59.772 50.000 0.00 0.00 0.00 3.08
2390 2416 1.000163 CACTTCTACGACAGCACAGGT 60.000 52.381 0.00 0.00 0.00 4.00
2391 2417 1.000163 ACACTTCTACGACAGCACAGG 60.000 52.381 0.00 0.00 0.00 4.00
2392 2418 2.423926 ACACTTCTACGACAGCACAG 57.576 50.000 0.00 0.00 0.00 3.66
2393 2419 2.545113 GGAACACTTCTACGACAGCACA 60.545 50.000 0.00 0.00 0.00 4.57
2394 2420 2.059541 GGAACACTTCTACGACAGCAC 58.940 52.381 0.00 0.00 0.00 4.40
2395 2421 1.684450 TGGAACACTTCTACGACAGCA 59.316 47.619 0.00 0.00 0.00 4.41
2396 2422 2.433868 TGGAACACTTCTACGACAGC 57.566 50.000 0.00 0.00 0.00 4.40
2412 2438 9.418839 TGATGATAATTTTGGTAATGTCATGGA 57.581 29.630 0.00 0.00 0.00 3.41
2413 2439 9.467258 GTGATGATAATTTTGGTAATGTCATGG 57.533 33.333 0.00 0.00 0.00 3.66
2414 2440 9.172820 CGTGATGATAATTTTGGTAATGTCATG 57.827 33.333 0.00 0.00 0.00 3.07
2415 2441 8.352201 CCGTGATGATAATTTTGGTAATGTCAT 58.648 33.333 0.00 0.00 0.00 3.06
2416 2442 7.554476 TCCGTGATGATAATTTTGGTAATGTCA 59.446 33.333 0.00 0.00 0.00 3.58
2417 2443 7.925993 TCCGTGATGATAATTTTGGTAATGTC 58.074 34.615 0.00 0.00 0.00 3.06
2418 2444 7.873719 TCCGTGATGATAATTTTGGTAATGT 57.126 32.000 0.00 0.00 0.00 2.71
2419 2445 8.405531 ACTTCCGTGATGATAATTTTGGTAATG 58.594 33.333 0.00 0.00 0.00 1.90
2420 2446 8.405531 CACTTCCGTGATGATAATTTTGGTAAT 58.594 33.333 0.00 0.00 43.97 1.89
2421 2447 7.392113 ACACTTCCGTGATGATAATTTTGGTAA 59.608 33.333 0.00 0.00 43.97 2.85
2422 2448 6.882140 ACACTTCCGTGATGATAATTTTGGTA 59.118 34.615 0.00 0.00 43.97 3.25
2423 2449 5.710099 ACACTTCCGTGATGATAATTTTGGT 59.290 36.000 0.00 0.00 43.97 3.67
2424 2450 6.194796 ACACTTCCGTGATGATAATTTTGG 57.805 37.500 0.00 0.00 43.97 3.28
2425 2451 6.128035 TGGACACTTCCGTGATGATAATTTTG 60.128 38.462 0.00 0.00 46.37 2.44
2426 2452 5.943416 TGGACACTTCCGTGATGATAATTTT 59.057 36.000 0.00 0.00 46.37 1.82
2427 2453 5.354234 GTGGACACTTCCGTGATGATAATTT 59.646 40.000 0.00 0.00 46.37 1.82
2428 2454 4.876107 GTGGACACTTCCGTGATGATAATT 59.124 41.667 0.00 0.00 46.37 1.40
2429 2455 4.162320 AGTGGACACTTCCGTGATGATAAT 59.838 41.667 0.00 0.00 46.37 1.28
2430 2456 3.513912 AGTGGACACTTCCGTGATGATAA 59.486 43.478 0.00 0.00 46.37 1.75
2431 2457 3.096852 AGTGGACACTTCCGTGATGATA 58.903 45.455 0.00 0.00 46.37 2.15
2432 2458 1.902508 AGTGGACACTTCCGTGATGAT 59.097 47.619 0.00 0.00 46.37 2.45
2433 2459 1.338107 AGTGGACACTTCCGTGATGA 58.662 50.000 0.00 0.00 46.37 2.92
2434 2460 3.914984 AGTGGACACTTCCGTGATG 57.085 52.632 0.00 0.00 46.37 3.07
2443 2469 5.698741 TTATCATCATGGAAGTGGACACT 57.301 39.130 0.00 0.00 44.94 3.55
2444 2470 6.293081 CGATTTATCATCATGGAAGTGGACAC 60.293 42.308 0.00 0.00 0.00 3.67
2445 2471 5.759763 CGATTTATCATCATGGAAGTGGACA 59.240 40.000 0.00 0.00 0.00 4.02
2446 2472 5.334414 GCGATTTATCATCATGGAAGTGGAC 60.334 44.000 0.00 0.00 0.00 4.02
2447 2473 4.756642 GCGATTTATCATCATGGAAGTGGA 59.243 41.667 0.00 0.00 0.00 4.02
2448 2474 4.377738 CGCGATTTATCATCATGGAAGTGG 60.378 45.833 0.00 0.00 0.00 4.00
2449 2475 4.705492 CGCGATTTATCATCATGGAAGTG 58.295 43.478 0.00 0.00 0.00 3.16
2450 2476 3.187227 GCGCGATTTATCATCATGGAAGT 59.813 43.478 12.10 0.00 0.00 3.01
2451 2477 3.722957 CGCGCGATTTATCATCATGGAAG 60.723 47.826 28.94 0.00 0.00 3.46
2452 2478 2.157474 CGCGCGATTTATCATCATGGAA 59.843 45.455 28.94 0.00 0.00 3.53
2453 2479 1.726248 CGCGCGATTTATCATCATGGA 59.274 47.619 28.94 0.00 0.00 3.41
2454 2480 1.460743 ACGCGCGATTTATCATCATGG 59.539 47.619 39.36 0.67 0.00 3.66
2455 2481 2.155539 TGACGCGCGATTTATCATCATG 59.844 45.455 39.36 1.45 0.00 3.07
2456 2482 2.155732 GTGACGCGCGATTTATCATCAT 59.844 45.455 39.36 9.23 0.00 2.45
2457 2483 1.521006 GTGACGCGCGATTTATCATCA 59.479 47.619 39.36 23.64 0.00 3.07
2458 2484 1.521006 TGTGACGCGCGATTTATCATC 59.479 47.619 39.36 21.10 0.00 2.92
2459 2485 1.522676 CTGTGACGCGCGATTTATCAT 59.477 47.619 39.36 11.73 0.00 2.45
2460 2486 0.920664 CTGTGACGCGCGATTTATCA 59.079 50.000 39.36 26.03 0.00 2.15
2461 2487 1.197055 TCTGTGACGCGCGATTTATC 58.803 50.000 39.36 23.49 0.00 1.75
2462 2488 1.588404 CTTCTGTGACGCGCGATTTAT 59.412 47.619 39.36 14.54 0.00 1.40
2463 2489 0.989164 CTTCTGTGACGCGCGATTTA 59.011 50.000 39.36 18.32 0.00 1.40
2464 2490 0.944311 ACTTCTGTGACGCGCGATTT 60.944 50.000 39.36 15.50 0.00 2.17
2465 2491 1.372997 ACTTCTGTGACGCGCGATT 60.373 52.632 39.36 16.45 0.00 3.34
2466 2492 2.088763 CACTTCTGTGACGCGCGAT 61.089 57.895 39.36 21.24 46.55 4.58
2467 2493 2.729491 CACTTCTGTGACGCGCGA 60.729 61.111 39.36 13.15 46.55 5.87
2468 2494 4.415501 GCACTTCTGTGACGCGCG 62.416 66.667 30.96 30.96 46.55 6.86
2469 2495 2.105960 AAAGCACTTCTGTGACGCGC 62.106 55.000 5.73 0.00 46.55 6.86
2470 2496 0.111089 GAAAGCACTTCTGTGACGCG 60.111 55.000 3.53 3.53 46.55 6.01
2471 2497 0.111089 CGAAAGCACTTCTGTGACGC 60.111 55.000 0.00 0.00 46.55 5.19
2472 2498 1.190323 GACGAAAGCACTTCTGTGACG 59.810 52.381 0.00 0.00 46.55 4.35
2473 2499 2.201732 TGACGAAAGCACTTCTGTGAC 58.798 47.619 0.00 0.00 46.55 3.67
2474 2500 2.595124 TGACGAAAGCACTTCTGTGA 57.405 45.000 0.00 0.00 46.55 3.58
2475 2501 2.032549 CCTTGACGAAAGCACTTCTGTG 60.033 50.000 0.00 0.00 46.37 3.66
2476 2502 2.213499 CCTTGACGAAAGCACTTCTGT 58.787 47.619 0.00 0.00 34.24 3.41
2477 2503 1.532868 CCCTTGACGAAAGCACTTCTG 59.467 52.381 0.00 0.00 34.24 3.02
2478 2504 1.141053 ACCCTTGACGAAAGCACTTCT 59.859 47.619 0.00 0.00 34.24 2.85
2479 2505 1.264288 CACCCTTGACGAAAGCACTTC 59.736 52.381 0.00 0.00 34.24 3.01
2480 2506 1.134220 TCACCCTTGACGAAAGCACTT 60.134 47.619 0.00 0.00 34.24 3.16
2481 2507 0.468226 TCACCCTTGACGAAAGCACT 59.532 50.000 0.00 0.00 34.24 4.40
2482 2508 0.586802 GTCACCCTTGACGAAAGCAC 59.413 55.000 0.00 0.00 42.86 4.40
2483 2509 3.000815 GTCACCCTTGACGAAAGCA 57.999 52.632 0.00 0.00 42.86 3.91
2491 2517 2.129146 ACGTGTCGGTCACCCTTGA 61.129 57.895 0.00 0.00 43.51 3.02
2492 2518 1.954146 CACGTGTCGGTCACCCTTG 60.954 63.158 7.58 0.00 43.51 3.61
2493 2519 2.420043 CACGTGTCGGTCACCCTT 59.580 61.111 7.58 0.00 43.51 3.95
2494 2520 3.612681 CCACGTGTCGGTCACCCT 61.613 66.667 15.65 0.00 43.51 4.34
2496 2522 3.876589 ATGCCACGTGTCGGTCACC 62.877 63.158 15.65 0.00 43.51 4.02
2497 2523 2.357034 ATGCCACGTGTCGGTCAC 60.357 61.111 15.65 0.00 43.03 3.67
2498 2524 2.048597 GATGCCACGTGTCGGTCA 60.049 61.111 15.65 4.62 0.00 4.02
2499 2525 2.813908 GGATGCCACGTGTCGGTC 60.814 66.667 15.65 4.01 0.00 4.79
2500 2526 3.621805 TGGATGCCACGTGTCGGT 61.622 61.111 15.65 0.00 0.00 4.69
2501 2527 3.118454 GTGGATGCCACGTGTCGG 61.118 66.667 15.65 0.00 44.95 4.79
2509 2535 0.621082 TTCCGTTATGGTGGATGCCA 59.379 50.000 0.00 0.00 43.48 4.92
2510 2536 1.021968 GTTCCGTTATGGTGGATGCC 58.978 55.000 0.00 0.00 39.52 4.40
2511 2537 0.655733 CGTTCCGTTATGGTGGATGC 59.344 55.000 0.00 0.00 39.52 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.