Multiple sequence alignment - TraesCS3A01G155000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G155000 chr3A 100.000 9160 0 0 1 9160 146781121 146771962 0.000000e+00 16916.0
1 TraesCS3A01G155000 chr3A 98.317 5230 88 0 1169 6398 203841267 203836038 0.000000e+00 9171.0
2 TraesCS3A01G155000 chr3A 96.579 5232 166 2 1168 6398 260213076 260207857 0.000000e+00 8658.0
3 TraesCS3A01G155000 chr3A 95.408 4464 202 3 1169 5630 446539297 446534835 0.000000e+00 7105.0
4 TraesCS3A01G155000 chr4A 98.303 5245 82 5 1158 6398 159496645 159501886 0.000000e+00 9186.0
5 TraesCS3A01G155000 chr4A 90.369 488 39 6 8674 9160 37800377 37800857 1.300000e-177 634.0
6 TraesCS3A01G155000 chr2A 98.223 5233 85 3 1166 6398 733695664 733690440 0.000000e+00 9142.0
7 TraesCS3A01G155000 chr2A 86.288 299 39 2 143 439 459017005 459017303 3.190000e-84 324.0
8 TraesCS3A01G155000 chr3B 98.064 4649 87 2 1169 5816 797015876 797020522 0.000000e+00 8083.0
9 TraesCS3A01G155000 chr3B 98.503 4208 63 0 1164 5371 101644955 101640748 0.000000e+00 7422.0
10 TraesCS3A01G155000 chr3B 93.656 1671 69 15 7010 8668 189489910 189488265 0.000000e+00 2464.0
11 TraesCS3A01G155000 chr3B 91.518 955 65 9 219 1164 189491396 189490449 0.000000e+00 1301.0
12 TraesCS3A01G155000 chr3B 91.832 404 17 10 6579 6968 189490316 189489915 4.830000e-152 549.0
13 TraesCS3A01G155000 chr3B 91.250 240 21 0 7988 8227 189485841 189485602 2.470000e-85 327.0
14 TraesCS3A01G155000 chr3B 90.698 172 11 3 8990 9160 24045407 24045240 3.330000e-54 224.0
15 TraesCS3A01G155000 chr3B 97.656 128 2 1 6400 6527 189490459 189490333 1.550000e-52 219.0
16 TraesCS3A01G155000 chr3B 87.681 138 13 2 4 141 189491563 189491430 3.420000e-34 158.0
17 TraesCS3A01G155000 chr1A 95.230 4465 209 4 1166 5630 577062711 577058251 0.000000e+00 7062.0
18 TraesCS3A01G155000 chr1A 95.167 4469 209 3 1164 5630 553956116 553951653 0.000000e+00 7049.0
19 TraesCS3A01G155000 chr1A 96.000 150 5 1 1168 1317 6394452 6394304 9.190000e-60 243.0
20 TraesCS3A01G155000 chr1A 90.683 161 12 1 1170 1330 575127823 575127980 2.590000e-50 211.0
21 TraesCS3A01G155000 chr4D 86.981 4455 538 31 1171 5611 422200073 422195647 0.000000e+00 4975.0
22 TraesCS3A01G155000 chr4D 92.969 2745 165 14 1167 3909 464987124 464984406 0.000000e+00 3975.0
23 TraesCS3A01G155000 chr4D 90.495 2041 178 11 1167 3204 246594522 246596549 0.000000e+00 2680.0
24 TraesCS3A01G155000 chr4D 86.379 301 36 5 143 439 31054536 31054237 3.190000e-84 324.0
25 TraesCS3A01G155000 chr4D 81.982 222 26 12 1170 1390 88699784 88699576 9.450000e-40 176.0
26 TraesCS3A01G155000 chr3D 93.288 1326 68 13 7066 8376 133107721 133106402 0.000000e+00 1936.0
27 TraesCS3A01G155000 chr3D 91.074 829 50 15 342 1164 133109285 133108475 0.000000e+00 1099.0
28 TraesCS3A01G155000 chr3D 90.582 584 37 8 6400 6967 133108485 133107904 0.000000e+00 758.0
29 TraesCS3A01G155000 chr3D 84.327 453 41 14 7988 8434 133100326 133099898 5.120000e-112 416.0
30 TraesCS3A01G155000 chr3D 85.714 315 41 4 143 454 528115388 528115701 6.860000e-86 329.0
31 TraesCS3A01G155000 chr3D 98.438 64 0 1 8426 8488 133106405 133106342 2.700000e-20 111.0
32 TraesCS3A01G155000 chr3D 93.878 49 2 1 7005 7053 133107907 133107860 1.280000e-08 73.1
33 TraesCS3A01G155000 chrUn 98.058 618 12 0 5489 6106 472111189 472110572 0.000000e+00 1075.0
34 TraesCS3A01G155000 chrUn 99.313 291 2 0 6108 6398 340419724 340419434 2.270000e-145 527.0
35 TraesCS3A01G155000 chrUn 99.313 291 2 0 6108 6398 340445235 340445525 2.270000e-145 527.0
36 TraesCS3A01G155000 chrUn 99.313 291 2 0 6108 6398 463697339 463697629 2.270000e-145 527.0
37 TraesCS3A01G155000 chrUn 100.000 30 0 0 6973 7002 108299099 108299070 1.000000e-03 56.5
38 TraesCS3A01G155000 chr5A 93.469 490 26 5 8673 9160 241527425 241526940 0.000000e+00 723.0
39 TraesCS3A01G155000 chr5A 91.355 428 26 7 8672 9095 612891362 612890942 7.980000e-160 575.0
40 TraesCS3A01G155000 chr5A 87.919 298 34 2 143 438 647359555 647359852 5.260000e-92 350.0
41 TraesCS3A01G155000 chr5A 91.538 130 10 1 1 130 677675337 677675209 2.630000e-40 178.0
42 TraesCS3A01G155000 chr5A 89.524 105 11 0 5 109 436333800 436333696 5.770000e-27 134.0
43 TraesCS3A01G155000 chr2B 92.464 491 30 5 8672 9160 491069438 491068953 0.000000e+00 695.0
44 TraesCS3A01G155000 chr2B 86.184 304 40 2 144 445 212184725 212184422 2.470000e-85 327.0
45 TraesCS3A01G155000 chr2B 100.000 31 0 0 6973 7003 448906733 448906763 3.570000e-04 58.4
46 TraesCS3A01G155000 chr2B 100.000 31 0 0 6973 7003 662797633 662797603 3.570000e-04 58.4
47 TraesCS3A01G155000 chr5B 90.984 488 36 5 8674 9160 31588375 31587895 0.000000e+00 651.0
48 TraesCS3A01G155000 chr5B 100.000 31 0 0 6973 7003 322144381 322144411 3.570000e-04 58.4
49 TraesCS3A01G155000 chr7A 90.041 492 42 5 8670 9160 50796292 50796777 1.680000e-176 630.0
50 TraesCS3A01G155000 chr1B 89.109 505 39 3 8671 9160 27261880 27262383 1.690000e-171 614.0
51 TraesCS3A01G155000 chr1B 87.719 285 33 2 143 425 484457556 484457840 1.910000e-86 331.0
52 TraesCS3A01G155000 chr1B 97.297 37 1 0 6973 7009 668127131 668127095 7.680000e-06 63.9
53 TraesCS3A01G155000 chr1B 92.308 39 3 0 6975 7013 476344239 476344277 1.000000e-03 56.5
54 TraesCS3A01G155000 chr6B 89.249 493 36 9 8671 9159 643560433 643560912 1.320000e-167 601.0
55 TraesCS3A01G155000 chr7B 88.934 488 46 6 8674 9160 239590325 239589845 6.120000e-166 595.0
56 TraesCS3A01G155000 chr2D 87.667 300 34 3 143 439 618294776 618294477 6.810000e-91 346.0
57 TraesCS3A01G155000 chr2D 100.000 31 0 0 6973 7003 555933388 555933358 3.570000e-04 58.4
58 TraesCS3A01G155000 chr7D 85.993 307 40 3 143 447 49806595 49806900 8.870000e-85 326.0
59 TraesCS3A01G155000 chr6D 97.222 36 1 0 6973 7008 23431934 23431899 2.760000e-05 62.1
60 TraesCS3A01G155000 chr6D 97.222 36 1 0 6973 7008 31762049 31762014 2.760000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G155000 chr3A 146771962 146781121 9159 True 16916.000000 16916 100.0000 1 9160 1 chr3A.!!$R1 9159
1 TraesCS3A01G155000 chr3A 203836038 203841267 5229 True 9171.000000 9171 98.3170 1169 6398 1 chr3A.!!$R2 5229
2 TraesCS3A01G155000 chr3A 260207857 260213076 5219 True 8658.000000 8658 96.5790 1168 6398 1 chr3A.!!$R3 5230
3 TraesCS3A01G155000 chr3A 446534835 446539297 4462 True 7105.000000 7105 95.4080 1169 5630 1 chr3A.!!$R4 4461
4 TraesCS3A01G155000 chr4A 159496645 159501886 5241 False 9186.000000 9186 98.3030 1158 6398 1 chr4A.!!$F2 5240
5 TraesCS3A01G155000 chr2A 733690440 733695664 5224 True 9142.000000 9142 98.2230 1166 6398 1 chr2A.!!$R1 5232
6 TraesCS3A01G155000 chr3B 797015876 797020522 4646 False 8083.000000 8083 98.0640 1169 5816 1 chr3B.!!$F1 4647
7 TraesCS3A01G155000 chr3B 101640748 101644955 4207 True 7422.000000 7422 98.5030 1164 5371 1 chr3B.!!$R2 4207
8 TraesCS3A01G155000 chr3B 189485602 189491563 5961 True 836.333333 2464 92.2655 4 8668 6 chr3B.!!$R3 8664
9 TraesCS3A01G155000 chr1A 577058251 577062711 4460 True 7062.000000 7062 95.2300 1166 5630 1 chr1A.!!$R3 4464
10 TraesCS3A01G155000 chr1A 553951653 553956116 4463 True 7049.000000 7049 95.1670 1164 5630 1 chr1A.!!$R2 4466
11 TraesCS3A01G155000 chr4D 422195647 422200073 4426 True 4975.000000 4975 86.9810 1171 5611 1 chr4D.!!$R3 4440
12 TraesCS3A01G155000 chr4D 464984406 464987124 2718 True 3975.000000 3975 92.9690 1167 3909 1 chr4D.!!$R4 2742
13 TraesCS3A01G155000 chr4D 246594522 246596549 2027 False 2680.000000 2680 90.4950 1167 3204 1 chr4D.!!$F1 2037
14 TraesCS3A01G155000 chr3D 133106342 133109285 2943 True 795.420000 1936 93.4520 342 8488 5 chr3D.!!$R2 8146
15 TraesCS3A01G155000 chrUn 472110572 472111189 617 True 1075.000000 1075 98.0580 5489 6106 1 chrUn.!!$R3 617
16 TraesCS3A01G155000 chr1B 27261880 27262383 503 False 614.000000 614 89.1090 8671 9160 1 chr1B.!!$F1 489

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
210 211 0.173935 CACCCCTATGAACGTACGCA 59.826 55.000 16.72 6.61 0.00 5.24 F
211 212 0.174162 ACCCCTATGAACGTACGCAC 59.826 55.000 16.72 10.22 0.00 5.34 F
225 226 0.246635 ACGCACGCATATCCTATCCC 59.753 55.000 0.00 0.00 0.00 3.85 F
320 321 0.317479 ACGAAAACGTCTCCTCCCAG 59.683 55.000 0.00 0.00 0.00 4.45 F
875 886 0.326332 AGCTCCAACCCTAGGTACCC 60.326 60.000 8.74 0.00 33.12 3.69 F
1472 1486 2.165030 GACCATAAACGAAGAGTCCCGA 59.835 50.000 9.18 0.00 0.00 5.14 F
3348 3369 3.221771 TGTGTCTGCCTTGCATAAAAGT 58.778 40.909 0.00 0.00 38.13 2.66 F
4137 4160 0.814010 GTATGCCTAGCCCAACCACG 60.814 60.000 0.00 0.00 0.00 4.94 F
5198 5226 1.040893 CCATCTGGTGTGGCATGCAT 61.041 55.000 21.36 0.00 0.00 3.96 F
6838 6897 0.305617 CACATGATGATGGAACGCGG 59.694 55.000 12.47 0.00 33.39 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1308 1322 5.450137 CCTCCATATTAGGCGTTATACGGAG 60.450 48.000 16.55 16.55 42.82 4.63 R
1728 1742 6.570186 GCAATGTGTATTTTGTCACCATGAGA 60.570 38.462 0.00 0.00 34.14 3.27 R
2350 2369 9.262358 GGCAAATGGTTGTTTAAATTACTAACA 57.738 29.630 0.00 0.00 37.06 2.41 R
2379 2398 3.046374 GAGGTTAAGAATAGGGCCCTCA 58.954 50.000 32.80 15.88 37.53 3.86 R
2479 2498 3.118261 TCTTTTGGCAAGGAGATAGCGAT 60.118 43.478 10.26 0.00 0.00 4.58 R
3526 3547 0.322816 ACCTACATGCTGGCCAACTG 60.323 55.000 7.01 7.12 0.00 3.16 R
5198 5226 4.228438 TCTCCTGTACTGATGAGGAAGAGA 59.772 45.833 0.60 0.00 35.43 3.10 R
5558 5586 0.620410 ACCATCATCCCCTTCACCGA 60.620 55.000 0.00 0.00 0.00 4.69 R
6849 6908 0.169009 GCAAGTCCTCCATGAAACGC 59.831 55.000 0.00 0.00 0.00 4.84 R
8301 8507 0.109086 ATCTCTGCAACTCGTCGTGG 60.109 55.000 0.00 0.00 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.991430 CGCGTCGGAGATGTTTCTG 59.009 57.895 0.00 0.00 46.97 3.02
33 34 0.732880 CGCGTCGGAGATGTTTCTGT 60.733 55.000 0.00 0.00 46.97 3.41
44 45 6.410540 GGAGATGTTTCTGTATTGGTTCTCT 58.589 40.000 0.00 0.00 30.30 3.10
88 89 0.533308 TCTTGTGGGGTGCGTTGTAC 60.533 55.000 0.00 0.00 0.00 2.90
91 92 2.111460 TGGGGTGCGTTGTACCAC 59.889 61.111 6.41 2.83 42.09 4.16
107 108 8.662141 CGTTGTACCACTGCTTACTTTTAATAT 58.338 33.333 0.00 0.00 0.00 1.28
117 118 9.574516 CTGCTTACTTTTAATATAATCTGGGGT 57.425 33.333 0.00 0.00 0.00 4.95
126 127 8.990163 TTAATATAATCTGGGGTCCTTTTCAC 57.010 34.615 0.00 0.00 0.00 3.18
138 139 5.010617 GGGTCCTTTTCACAAATGCTTAGAA 59.989 40.000 0.00 0.00 0.00 2.10
141 142 6.978080 GTCCTTTTCACAAATGCTTAGAAACA 59.022 34.615 0.00 0.00 0.00 2.83
143 144 8.203485 TCCTTTTCACAAATGCTTAGAAACATT 58.797 29.630 0.00 0.00 38.11 2.71
167 168 6.737254 TTTTAATACAGTACAGAGGCAAGC 57.263 37.500 0.00 0.00 0.00 4.01
168 169 2.586258 ATACAGTACAGAGGCAAGCG 57.414 50.000 0.00 0.00 0.00 4.68
170 171 1.079543 CAGTACAGAGGCAAGCGCT 60.080 57.895 2.64 2.64 38.60 5.92
171 172 1.080995 CAGTACAGAGGCAAGCGCTC 61.081 60.000 12.06 0.00 38.60 5.03
173 174 0.460987 GTACAGAGGCAAGCGCTCAT 60.461 55.000 12.06 0.00 38.60 2.90
174 175 1.111277 TACAGAGGCAAGCGCTCATA 58.889 50.000 12.06 0.00 38.60 2.15
176 177 0.460811 CAGAGGCAAGCGCTCATACA 60.461 55.000 12.06 0.00 38.60 2.29
177 178 0.467384 AGAGGCAAGCGCTCATACAT 59.533 50.000 12.06 0.00 38.60 2.29
178 179 1.688735 AGAGGCAAGCGCTCATACATA 59.311 47.619 12.06 0.00 38.60 2.29
179 180 2.301296 AGAGGCAAGCGCTCATACATAT 59.699 45.455 12.06 0.00 38.60 1.78
180 181 2.414481 GAGGCAAGCGCTCATACATATG 59.586 50.000 12.06 3.22 38.60 1.78
181 182 1.135859 GGCAAGCGCTCATACATATGC 60.136 52.381 12.06 14.61 38.60 3.14
183 184 2.159734 GCAAGCGCTCATACATATGCTC 60.160 50.000 12.06 0.00 33.76 4.26
184 185 3.062042 CAAGCGCTCATACATATGCTCA 58.938 45.455 12.06 0.00 33.76 4.26
185 186 3.606595 AGCGCTCATACATATGCTCAT 57.393 42.857 2.64 0.00 33.76 2.90
186 187 4.725790 AGCGCTCATACATATGCTCATA 57.274 40.909 2.64 0.00 33.76 2.15
187 188 4.428209 AGCGCTCATACATATGCTCATAC 58.572 43.478 2.64 0.00 33.76 2.39
188 189 4.082026 AGCGCTCATACATATGCTCATACA 60.082 41.667 2.64 0.00 33.76 2.29
189 190 4.032217 GCGCTCATACATATGCTCATACAC 59.968 45.833 0.00 0.00 33.76 2.90
190 191 5.405797 CGCTCATACATATGCTCATACACT 58.594 41.667 1.58 0.00 33.76 3.55
191 192 5.514559 CGCTCATACATATGCTCATACACTC 59.485 44.000 1.58 0.00 33.76 3.51
192 193 6.393171 GCTCATACATATGCTCATACACTCA 58.607 40.000 1.58 0.00 33.76 3.41
193 194 6.309980 GCTCATACATATGCTCATACACTCAC 59.690 42.308 1.58 0.00 33.76 3.51
194 195 6.691508 TCATACATATGCTCATACACTCACC 58.308 40.000 1.58 0.00 33.76 4.02
195 196 4.342862 ACATATGCTCATACACTCACCC 57.657 45.455 1.58 0.00 0.00 4.61
196 197 3.071602 ACATATGCTCATACACTCACCCC 59.928 47.826 1.58 0.00 0.00 4.95
197 198 1.885049 ATGCTCATACACTCACCCCT 58.115 50.000 0.00 0.00 0.00 4.79
198 199 2.543037 TGCTCATACACTCACCCCTA 57.457 50.000 0.00 0.00 0.00 3.53
199 200 3.046283 TGCTCATACACTCACCCCTAT 57.954 47.619 0.00 0.00 0.00 2.57
200 201 2.700371 TGCTCATACACTCACCCCTATG 59.300 50.000 0.00 0.00 0.00 2.23
201 202 2.965831 GCTCATACACTCACCCCTATGA 59.034 50.000 0.00 0.00 0.00 2.15
202 203 3.388024 GCTCATACACTCACCCCTATGAA 59.612 47.826 0.00 0.00 0.00 2.57
203 204 4.740934 GCTCATACACTCACCCCTATGAAC 60.741 50.000 0.00 0.00 0.00 3.18
204 205 3.383505 TCATACACTCACCCCTATGAACG 59.616 47.826 0.00 0.00 0.00 3.95
205 206 1.640917 ACACTCACCCCTATGAACGT 58.359 50.000 0.00 0.00 0.00 3.99
206 207 2.811410 ACACTCACCCCTATGAACGTA 58.189 47.619 0.00 0.00 0.00 3.57
207 208 2.494870 ACACTCACCCCTATGAACGTAC 59.505 50.000 0.00 0.00 0.00 3.67
208 209 1.747355 ACTCACCCCTATGAACGTACG 59.253 52.381 15.01 15.01 0.00 3.67
209 210 0.457035 TCACCCCTATGAACGTACGC 59.543 55.000 16.72 0.00 0.00 4.42
210 211 0.173935 CACCCCTATGAACGTACGCA 59.826 55.000 16.72 6.61 0.00 5.24
211 212 0.174162 ACCCCTATGAACGTACGCAC 59.826 55.000 16.72 10.22 0.00 5.34
220 221 4.628160 CGTACGCACGCATATCCT 57.372 55.556 0.52 0.00 42.05 3.24
221 222 3.759550 CGTACGCACGCATATCCTA 57.240 52.632 0.52 0.00 42.05 2.94
222 223 2.257974 CGTACGCACGCATATCCTAT 57.742 50.000 0.52 0.00 42.05 2.57
223 224 2.174764 CGTACGCACGCATATCCTATC 58.825 52.381 0.52 0.00 42.05 2.08
224 225 2.527100 GTACGCACGCATATCCTATCC 58.473 52.381 0.00 0.00 0.00 2.59
225 226 0.246635 ACGCACGCATATCCTATCCC 59.753 55.000 0.00 0.00 0.00 3.85
226 227 0.532573 CGCACGCATATCCTATCCCT 59.467 55.000 0.00 0.00 0.00 4.20
227 228 1.749063 CGCACGCATATCCTATCCCTA 59.251 52.381 0.00 0.00 0.00 3.53
228 229 2.362397 CGCACGCATATCCTATCCCTAT 59.638 50.000 0.00 0.00 0.00 2.57
234 235 4.500545 CGCATATCCTATCCCTATGAGCAC 60.501 50.000 0.00 0.00 0.00 4.40
241 242 1.860641 TCCCTATGAGCACCTTCGAA 58.139 50.000 0.00 0.00 0.00 3.71
265 266 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
272 273 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
282 283 6.687604 TCATCTTGAGATTTACGAAGTCACA 58.312 36.000 0.00 0.00 35.39 3.58
288 289 5.475909 TGAGATTTACGAAGTCACAGTAGGT 59.524 40.000 0.00 0.00 43.93 3.08
291 292 6.432162 AGATTTACGAAGTCACAGTAGGTACA 59.568 38.462 0.00 0.00 43.93 2.90
293 294 6.579666 TTACGAAGTCACAGTAGGTACATT 57.420 37.500 0.00 0.00 43.93 2.71
297 298 5.564063 CGAAGTCACAGTAGGTACATTGTCA 60.564 44.000 0.00 0.00 0.00 3.58
304 305 3.943381 AGTAGGTACATTGTCATCGACGA 59.057 43.478 0.00 0.00 34.95 4.20
305 306 3.861276 AGGTACATTGTCATCGACGAA 57.139 42.857 0.00 0.00 34.95 3.85
320 321 0.317479 ACGAAAACGTCTCCTCCCAG 59.683 55.000 0.00 0.00 0.00 4.45
327 328 0.390472 CGTCTCCTCCCAGTGAAAGC 60.390 60.000 0.00 0.00 0.00 3.51
337 338 3.561429 GTGAAAGCACATCGCCGA 58.439 55.556 0.00 0.00 44.51 5.54
342 343 2.177173 GAAAGCACATCGCCGAAAATC 58.823 47.619 0.00 0.00 44.04 2.17
343 344 0.451783 AAGCACATCGCCGAAAATCC 59.548 50.000 0.00 0.00 44.04 3.01
353 355 5.418310 TCGCCGAAAATCCTGAAATAATC 57.582 39.130 0.00 0.00 0.00 1.75
371 373 7.549147 AATAATCCAGGAATAATGCAAGCAT 57.451 32.000 0.86 0.86 38.46 3.79
380 382 5.532406 GGAATAATGCAAGCATCAGGACTTA 59.468 40.000 8.14 0.00 35.31 2.24
394 396 2.576648 AGGACTTAAACCCTGATGGACC 59.423 50.000 0.00 0.00 38.00 4.46
425 427 4.324563 CCACTGTTCCTCTAACCATCCAAT 60.325 45.833 0.00 0.00 37.27 3.16
426 428 4.878397 CACTGTTCCTCTAACCATCCAATC 59.122 45.833 0.00 0.00 37.27 2.67
428 430 5.192522 ACTGTTCCTCTAACCATCCAATCAT 59.807 40.000 0.00 0.00 37.27 2.45
430 432 7.092444 ACTGTTCCTCTAACCATCCAATCATAA 60.092 37.037 0.00 0.00 37.27 1.90
433 435 6.830912 TCCTCTAACCATCCAATCATAAGTG 58.169 40.000 0.00 0.00 0.00 3.16
439 441 4.017591 ACCATCCAATCATAAGTGGGTTCA 60.018 41.667 0.00 0.00 41.09 3.18
509 514 2.892784 AGCACTAAGGCTATTCCGTC 57.107 50.000 0.00 0.00 43.70 4.79
544 550 0.518636 TGACTCATTTTGCTGAGCGC 59.481 50.000 0.00 0.00 45.37 5.92
628 634 7.514805 TGCGAGTTGTGTTAATATAAGTTGTG 58.485 34.615 5.91 0.00 0.00 3.33
668 674 0.908910 TACACCTCCGATGCATGGTT 59.091 50.000 2.46 0.00 0.00 3.67
717 724 4.681942 CGATCGATCTCCACCAACTTAATC 59.318 45.833 22.43 0.00 0.00 1.75
769 776 5.959618 AGTTGACATTTTTAGTACCAGCC 57.040 39.130 0.00 0.00 0.00 4.85
870 881 1.604378 CCACAGCTCCAACCCTAGG 59.396 63.158 0.06 0.06 0.00 3.02
875 886 0.326332 AGCTCCAACCCTAGGTACCC 60.326 60.000 8.74 0.00 33.12 3.69
893 904 5.809051 GGTACCCAACTTGCTATATATACGC 59.191 44.000 0.00 7.04 0.00 4.42
956 967 3.836949 CACAGCACACAAAACAAGTCTT 58.163 40.909 0.00 0.00 0.00 3.01
1092 1103 2.832129 GGGGTACATCACTCAGAAGACA 59.168 50.000 0.00 0.00 0.00 3.41
1220 1231 4.497291 AGATTTAAGCATTACACCCGGA 57.503 40.909 0.73 0.00 0.00 5.14
1308 1322 5.726679 GCGAATTACAACGAAACATGTAGAC 59.273 40.000 0.00 0.00 33.85 2.59
1472 1486 2.165030 GACCATAAACGAAGAGTCCCGA 59.835 50.000 9.18 0.00 0.00 5.14
1578 1592 3.249189 AAGCGCTCCCACCCTGAA 61.249 61.111 12.06 0.00 0.00 3.02
2126 2145 5.480205 TGTGGCGTACAATGTTGTATAGAA 58.520 37.500 8.67 0.00 44.59 2.10
2350 2369 3.356290 GGTTTGCCATACACCATCTTCT 58.644 45.455 0.00 0.00 34.09 2.85
2379 2398 7.382898 AGTAATTTAAACAACCATTTGCCGAT 58.617 30.769 0.00 0.00 36.00 4.18
2479 2498 9.692749 CATTTAGCCAGTCGATATTTCTTACTA 57.307 33.333 0.00 0.00 0.00 1.82
2621 2641 3.256704 AGTACCAATCTTCCACCCAGAA 58.743 45.455 0.00 0.00 0.00 3.02
2922 2943 7.674120 TCATGATCCATGAAGAGAATCGTATT 58.326 34.615 7.13 0.00 46.17 1.89
2924 2945 6.226052 TGATCCATGAAGAGAATCGTATTGG 58.774 40.000 0.00 0.00 42.67 3.16
2926 2947 5.989477 TCCATGAAGAGAATCGTATTGGTT 58.011 37.500 0.00 0.00 42.67 3.67
2927 2948 6.414732 TCCATGAAGAGAATCGTATTGGTTT 58.585 36.000 0.00 0.00 42.67 3.27
3348 3369 3.221771 TGTGTCTGCCTTGCATAAAAGT 58.778 40.909 0.00 0.00 38.13 2.66
3526 3547 4.156182 CGAAGTTTAAGCGGAACAATTCC 58.844 43.478 0.00 0.00 46.62 3.01
3644 3665 2.106844 GGGGCTTTGTTATGCTCCG 58.893 57.895 0.00 0.00 40.28 4.63
3675 3696 3.653352 ACTGCCTTTCTAACTTCCTCCTT 59.347 43.478 0.00 0.00 0.00 3.36
4137 4160 0.814010 GTATGCCTAGCCCAACCACG 60.814 60.000 0.00 0.00 0.00 4.94
5198 5226 1.040893 CCATCTGGTGTGGCATGCAT 61.041 55.000 21.36 0.00 0.00 3.96
5376 5404 7.624360 AACGATGGCAGTATTAGAAAAATCA 57.376 32.000 0.00 0.00 0.00 2.57
5558 5586 2.997315 TGGCGCCTGCTCTACTGT 60.997 61.111 29.70 0.00 42.25 3.55
5675 5703 1.082117 GTCGTACCAGTGAATGCGGG 61.082 60.000 0.00 0.00 0.00 6.13
6398 6439 6.495181 GTGTCCATCTCATTATCCTTCTCCTA 59.505 42.308 0.00 0.00 0.00 2.94
6399 6440 7.015682 GTGTCCATCTCATTATCCTTCTCCTAA 59.984 40.741 0.00 0.00 0.00 2.69
6400 6441 7.015682 TGTCCATCTCATTATCCTTCTCCTAAC 59.984 40.741 0.00 0.00 0.00 2.34
6401 6442 7.015682 GTCCATCTCATTATCCTTCTCCTAACA 59.984 40.741 0.00 0.00 0.00 2.41
6402 6443 7.736691 TCCATCTCATTATCCTTCTCCTAACAT 59.263 37.037 0.00 0.00 0.00 2.71
6486 6527 3.879892 GGACATCCAAGGTAAAGATGCTC 59.120 47.826 0.00 0.00 40.87 4.26
6524 6568 5.752472 ACATTCAGTCTAATCAGATCAAGCG 59.248 40.000 0.00 0.00 32.09 4.68
6533 6577 8.510033 GTCTAATCAGATCAAGCGTGTATACGG 61.510 44.444 14.10 0.00 40.86 4.02
6565 6609 5.569059 GTGCGGAAATAACTTGACATGAAAG 59.431 40.000 0.00 5.52 0.00 2.62
6567 6611 5.640732 CGGAAATAACTTGACATGAAAGGG 58.359 41.667 0.00 0.00 0.00 3.95
6599 6643 6.851222 ACATTACGTGATGGATGATCTTTC 57.149 37.500 22.53 0.00 31.55 2.62
6601 6645 2.826428 ACGTGATGGATGATCTTTCCG 58.174 47.619 9.74 0.00 35.94 4.30
6621 6665 4.024387 TCCGTAAGCTTGAAATGTCAACAC 60.024 41.667 9.86 0.00 38.88 3.32
6677 6724 6.597672 TGAAACAAGCCTGTTCGTAATATCAT 59.402 34.615 0.14 0.00 45.25 2.45
6691 6750 9.738832 TTCGTAATATCATAACATCAGAACGAA 57.261 29.630 0.00 0.00 40.74 3.85
6723 6782 6.602803 TGAATTGATTAACAAGCCTGCTCATA 59.397 34.615 0.00 0.00 42.02 2.15
6727 6786 7.677454 TGATTAACAAGCCTGCTCATATATG 57.323 36.000 6.36 6.36 0.00 1.78
6769 6828 8.771920 TGTACTGTAGTGAATTTGAATGGTAG 57.228 34.615 0.00 0.00 0.00 3.18
6770 6829 8.590204 TGTACTGTAGTGAATTTGAATGGTAGA 58.410 33.333 0.00 0.00 0.00 2.59
6772 6831 6.590292 ACTGTAGTGAATTTGAATGGTAGACG 59.410 38.462 0.00 0.00 0.00 4.18
6804 6863 1.191647 CGGACGTGCTGAAACACTTAC 59.808 52.381 5.27 0.00 38.45 2.34
6838 6897 0.305617 CACATGATGATGGAACGCGG 59.694 55.000 12.47 0.00 33.39 6.46
6840 6899 0.815213 CATGATGATGGAACGCGGGT 60.815 55.000 12.47 0.00 0.00 5.28
6861 6920 2.046314 ACCGGGCGTTTCATGGAG 60.046 61.111 6.32 0.00 0.00 3.86
6968 7027 9.577110 TGTACGATCGAAGTGAAAAATAATACT 57.423 29.630 24.34 0.00 0.00 2.12
6971 7030 8.601476 ACGATCGAAGTGAAAAATAATACTTCC 58.399 33.333 24.34 0.00 43.66 3.46
6972 7031 8.600625 CGATCGAAGTGAAAAATAATACTTCCA 58.399 33.333 10.26 0.00 43.66 3.53
6975 7034 9.667107 TCGAAGTGAAAAATAATACTTCCATCT 57.333 29.630 0.00 0.00 43.66 2.90
6981 7040 9.997482 TGAAAAATAATACTTCCATCTAAACGC 57.003 29.630 0.00 0.00 0.00 4.84
6984 7043 9.614792 AAAATAATACTTCCATCTAAACGCTCT 57.385 29.630 0.00 0.00 0.00 4.09
6985 7044 9.614792 AAATAATACTTCCATCTAAACGCTCTT 57.385 29.630 0.00 0.00 0.00 2.85
6987 7046 9.694137 ATAATACTTCCATCTAAACGCTCTTAC 57.306 33.333 0.00 0.00 0.00 2.34
6988 7047 5.401531 ACTTCCATCTAAACGCTCTTACA 57.598 39.130 0.00 0.00 0.00 2.41
6989 7048 5.978814 ACTTCCATCTAAACGCTCTTACAT 58.021 37.500 0.00 0.00 0.00 2.29
6990 7049 6.407202 ACTTCCATCTAAACGCTCTTACATT 58.593 36.000 0.00 0.00 0.00 2.71
6991 7050 6.879458 ACTTCCATCTAAACGCTCTTACATTT 59.121 34.615 0.00 0.00 0.00 2.32
6992 7051 6.903883 TCCATCTAAACGCTCTTACATTTC 57.096 37.500 0.00 0.00 0.00 2.17
6993 7052 6.640518 TCCATCTAAACGCTCTTACATTTCT 58.359 36.000 0.00 0.00 0.00 2.52
6994 7053 7.103641 TCCATCTAAACGCTCTTACATTTCTT 58.896 34.615 0.00 0.00 0.00 2.52
6995 7054 7.606456 TCCATCTAAACGCTCTTACATTTCTTT 59.394 33.333 0.00 0.00 0.00 2.52
6996 7055 8.879759 CCATCTAAACGCTCTTACATTTCTTTA 58.120 33.333 0.00 0.00 0.00 1.85
6997 7056 9.690434 CATCTAAACGCTCTTACATTTCTTTAC 57.310 33.333 0.00 0.00 0.00 2.01
6998 7057 8.821147 TCTAAACGCTCTTACATTTCTTTACA 57.179 30.769 0.00 0.00 0.00 2.41
6999 7058 8.922676 TCTAAACGCTCTTACATTTCTTTACAG 58.077 33.333 0.00 0.00 0.00 2.74
7000 7059 7.724305 AAACGCTCTTACATTTCTTTACAGA 57.276 32.000 0.00 0.00 0.00 3.41
7001 7060 6.952935 ACGCTCTTACATTTCTTTACAGAG 57.047 37.500 0.00 0.00 0.00 3.35
7002 7061 5.869888 ACGCTCTTACATTTCTTTACAGAGG 59.130 40.000 0.00 0.00 0.00 3.69
7003 7062 6.100004 CGCTCTTACATTTCTTTACAGAGGA 58.900 40.000 0.00 0.00 0.00 3.71
7004 7063 6.590292 CGCTCTTACATTTCTTTACAGAGGAA 59.410 38.462 0.00 0.00 0.00 3.36
7005 7064 7.117812 CGCTCTTACATTTCTTTACAGAGGAAA 59.882 37.037 0.00 0.00 34.22 3.13
7006 7065 8.951243 GCTCTTACATTTCTTTACAGAGGAAAT 58.049 33.333 0.00 0.00 39.36 2.17
7147 7334 1.298859 AAGGCCAAAGCGTCGTCATC 61.299 55.000 5.01 0.00 41.24 2.92
7174 7361 2.497675 GACTGGACTGAGCATGGTAAGA 59.502 50.000 16.44 0.00 0.00 2.10
7252 7439 3.211045 ACTTAACGAACTGTTGCACCAT 58.789 40.909 0.00 0.00 42.01 3.55
7412 7599 1.078708 CGAATACTGGGCCCACGTT 60.079 57.895 24.45 16.01 0.00 3.99
7439 7626 2.301870 CTGGAACTGGCAGGTAGTACAA 59.698 50.000 20.34 0.00 0.00 2.41
7500 7687 5.163513 CAGGATTTTGATTTGTGGTGCTAC 58.836 41.667 0.00 0.00 0.00 3.58
7918 8106 2.048222 CCTCCGCAAGCAGTTCGA 60.048 61.111 0.00 0.00 0.00 3.71
8007 8195 3.222855 CCATCCGCTCGCTCTCCT 61.223 66.667 0.00 0.00 0.00 3.69
8165 8353 3.503363 GCGGACATGTGAGCCAGC 61.503 66.667 1.15 3.23 0.00 4.85
8170 8358 3.506096 CATGTGAGCCAGCAGCCG 61.506 66.667 0.00 0.00 45.47 5.52
8213 8404 3.192922 GCCCGTGCGTGGTGTATC 61.193 66.667 0.00 0.00 0.00 2.24
8265 8456 1.805945 CCGCGCTATCGATAAGGCC 60.806 63.158 17.09 0.00 38.10 5.19
8298 8504 0.465460 TCAACAGTTGGTGAGCCCAC 60.465 55.000 13.52 0.00 45.19 4.61
8299 8505 1.525995 AACAGTTGGTGAGCCCACG 60.526 57.895 0.00 0.00 45.19 4.94
8300 8506 1.978455 AACAGTTGGTGAGCCCACGA 61.978 55.000 0.00 0.00 45.19 4.35
8301 8507 1.961277 CAGTTGGTGAGCCCACGAC 60.961 63.158 0.00 0.00 45.19 4.34
8302 8508 2.668550 GTTGGTGAGCCCACGACC 60.669 66.667 0.00 0.00 45.19 4.79
8303 8509 3.164977 TTGGTGAGCCCACGACCA 61.165 61.111 0.00 0.00 45.19 4.02
8304 8510 3.469863 TTGGTGAGCCCACGACCAC 62.470 63.158 0.00 0.00 45.19 4.16
8306 8512 3.986006 GTGAGCCCACGACCACGA 61.986 66.667 0.00 0.00 42.66 4.35
8372 8581 2.634600 CGTTTGTCCGGATTCCCAATA 58.365 47.619 7.81 0.00 0.00 1.90
8378 8587 1.134220 TCCGGATTCCCAATAGTGTGC 60.134 52.381 0.00 0.00 0.00 4.57
8386 8595 6.756542 GGATTCCCAATAGTGTGCAATTTAAC 59.243 38.462 0.00 0.00 0.00 2.01
8389 8598 5.540337 TCCCAATAGTGTGCAATTTAACCAA 59.460 36.000 0.00 0.00 0.00 3.67
8414 8623 1.812571 ACTCAATTGAATCACGCCACC 59.187 47.619 9.88 0.00 0.00 4.61
8488 8698 2.159296 ACCGTTTCTTTTCACTTGGCAC 60.159 45.455 0.00 0.00 0.00 5.01
8492 8702 4.026640 CGTTTCTTTTCACTTGGCACATTG 60.027 41.667 0.00 0.00 39.30 2.82
8708 8921 2.345991 GCCGACTGGTGGTTAGCA 59.654 61.111 0.00 0.00 37.67 3.49
8786 10015 1.604278 GCAGCAATAGGAATCGAACCC 59.396 52.381 8.14 3.67 0.00 4.11
8788 10017 1.202651 AGCAATAGGAATCGAACCCCG 60.203 52.381 8.14 0.00 40.25 5.73
8792 10147 1.259142 TAGGAATCGAACCCCGCACA 61.259 55.000 8.14 0.00 38.37 4.57
8797 10152 0.179084 ATCGAACCCCGCACATACAG 60.179 55.000 0.00 0.00 38.37 2.74
8801 10156 0.249398 AACCCCGCACATACAGACTC 59.751 55.000 0.00 0.00 0.00 3.36
8804 10159 1.139734 CCGCACATACAGACTCGCT 59.860 57.895 0.00 0.00 0.00 4.93
8806 10161 1.001268 CCGCACATACAGACTCGCTAT 60.001 52.381 0.00 0.00 0.00 2.97
8808 10163 3.483734 CGCACATACAGACTCGCTATAG 58.516 50.000 0.00 0.00 0.00 1.31
8813 10168 6.642950 GCACATACAGACTCGCTATAGATTTT 59.357 38.462 3.21 0.00 0.00 1.82
8826 10181 8.644216 TCGCTATAGATTTTTGACTATACCCAA 58.356 33.333 3.21 0.00 32.57 4.12
8839 10194 5.219739 ACTATACCCAATGACCATCTCAGT 58.780 41.667 0.00 0.00 30.20 3.41
8842 10197 2.644299 ACCCAATGACCATCTCAGTCAA 59.356 45.455 0.00 0.00 46.67 3.18
8844 10199 3.307975 CCCAATGACCATCTCAGTCAACT 60.308 47.826 0.00 0.00 46.67 3.16
8845 10200 4.080919 CCCAATGACCATCTCAGTCAACTA 60.081 45.833 0.00 0.00 46.67 2.24
8866 10221 5.710099 ACTACATGTTTATGTTTGGAGGTGG 59.290 40.000 2.30 0.00 45.01 4.61
8895 10250 8.500753 AATTTTGTAGATACTTGATTACCGCA 57.499 30.769 0.00 0.00 0.00 5.69
8935 10290 1.341531 GCAGCCGTCCATCTATAGTGT 59.658 52.381 0.00 0.00 0.00 3.55
8948 10303 5.943706 TCTATAGTGTAGATCTGGCGAAC 57.056 43.478 5.18 0.00 0.00 3.95
8996 10351 2.859165 TCCTTTTGTTCGCCAGATCT 57.141 45.000 0.00 0.00 0.00 2.75
9008 10364 2.681848 CGCCAGATCTGATTTCTTGCTT 59.318 45.455 24.62 0.00 31.52 3.91
9016 10372 3.074390 TCTGATTTCTTGCTTTCCTCCCA 59.926 43.478 0.00 0.00 0.00 4.37
9140 11063 2.092914 GCCAACTCAACTAGCCTACCAT 60.093 50.000 0.00 0.00 0.00 3.55
9146 11069 3.031736 TCAACTAGCCTACCATCTGACC 58.968 50.000 0.00 0.00 0.00 4.02
9154 11077 3.757270 CCTACCATCTGACCTACGATCT 58.243 50.000 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.273370 TACAGAAACATCTCCGACGC 57.727 50.000 0.00 0.00 0.00 5.19
18 19 4.819105 ACCAATACAGAAACATCTCCGA 57.181 40.909 0.00 0.00 0.00 4.55
22 23 8.367660 TCTAGAGAACCAATACAGAAACATCT 57.632 34.615 0.00 0.00 0.00 2.90
32 33 5.952033 ACGAACACTCTAGAGAACCAATAC 58.048 41.667 26.57 7.81 0.00 1.89
33 34 6.015688 ACAACGAACACTCTAGAGAACCAATA 60.016 38.462 26.57 0.00 0.00 1.90
44 45 5.733620 AGGGAATTACAACGAACACTCTA 57.266 39.130 0.00 0.00 0.00 2.43
91 92 9.574516 ACCCCAGATTATATTAAAAGTAAGCAG 57.425 33.333 0.00 0.00 0.00 4.24
107 108 4.733077 TTGTGAAAAGGACCCCAGATTA 57.267 40.909 0.00 0.00 0.00 1.75
108 109 3.611025 TTGTGAAAAGGACCCCAGATT 57.389 42.857 0.00 0.00 0.00 2.40
109 110 3.611025 TTTGTGAAAAGGACCCCAGAT 57.389 42.857 0.00 0.00 0.00 2.90
110 111 3.230134 CATTTGTGAAAAGGACCCCAGA 58.770 45.455 0.00 0.00 0.00 3.86
111 112 2.289010 GCATTTGTGAAAAGGACCCCAG 60.289 50.000 0.00 0.00 0.00 4.45
112 113 1.691434 GCATTTGTGAAAAGGACCCCA 59.309 47.619 0.00 0.00 0.00 4.96
117 118 7.106439 TGTTTCTAAGCATTTGTGAAAAGGA 57.894 32.000 0.00 0.00 0.00 3.36
143 144 6.128391 CGCTTGCCTCTGTACTGTATTAAAAA 60.128 38.462 0.00 0.00 0.00 1.94
146 147 4.430007 CGCTTGCCTCTGTACTGTATTAA 58.570 43.478 0.00 0.00 0.00 1.40
147 148 3.737047 GCGCTTGCCTCTGTACTGTATTA 60.737 47.826 0.00 0.00 0.00 0.98
150 151 0.108804 GCGCTTGCCTCTGTACTGTA 60.109 55.000 0.00 0.00 0.00 2.74
151 152 1.374758 GCGCTTGCCTCTGTACTGT 60.375 57.895 0.00 0.00 0.00 3.55
152 153 1.079543 AGCGCTTGCCTCTGTACTG 60.080 57.895 2.64 0.00 40.41 2.74
153 154 1.216710 GAGCGCTTGCCTCTGTACT 59.783 57.895 13.26 0.00 40.41 2.73
154 155 0.460987 ATGAGCGCTTGCCTCTGTAC 60.461 55.000 13.26 0.00 40.41 2.90
156 157 0.460987 GTATGAGCGCTTGCCTCTGT 60.461 55.000 13.26 0.00 40.41 3.41
157 158 0.460811 TGTATGAGCGCTTGCCTCTG 60.461 55.000 13.26 0.00 40.41 3.35
158 159 0.467384 ATGTATGAGCGCTTGCCTCT 59.533 50.000 13.26 0.00 40.41 3.69
159 160 2.154854 TATGTATGAGCGCTTGCCTC 57.845 50.000 13.26 0.00 40.41 4.70
162 163 1.802960 AGCATATGTATGAGCGCTTGC 59.197 47.619 13.26 15.30 35.75 4.01
163 164 3.062042 TGAGCATATGTATGAGCGCTTG 58.938 45.455 13.26 3.84 35.75 4.01
164 165 3.391506 TGAGCATATGTATGAGCGCTT 57.608 42.857 13.26 0.00 35.75 4.68
167 168 5.405797 AGTGTATGAGCATATGTATGAGCG 58.594 41.667 4.29 0.00 35.75 5.03
168 169 6.309980 GTGAGTGTATGAGCATATGTATGAGC 59.690 42.308 4.29 0.00 35.75 4.26
170 171 6.295292 GGGTGAGTGTATGAGCATATGTATGA 60.295 42.308 4.29 0.00 35.75 2.15
171 172 5.871524 GGGTGAGTGTATGAGCATATGTATG 59.128 44.000 4.29 0.00 36.78 2.39
173 174 4.283467 GGGGTGAGTGTATGAGCATATGTA 59.717 45.833 4.29 0.00 0.00 2.29
174 175 3.071602 GGGGTGAGTGTATGAGCATATGT 59.928 47.826 4.29 0.00 0.00 2.29
176 177 3.591789 AGGGGTGAGTGTATGAGCATAT 58.408 45.455 0.00 0.00 0.00 1.78
177 178 3.046283 AGGGGTGAGTGTATGAGCATA 57.954 47.619 0.00 0.00 0.00 3.14
178 179 1.885049 AGGGGTGAGTGTATGAGCAT 58.115 50.000 0.00 0.00 0.00 3.79
179 180 2.543037 TAGGGGTGAGTGTATGAGCA 57.457 50.000 0.00 0.00 0.00 4.26
180 181 2.965831 TCATAGGGGTGAGTGTATGAGC 59.034 50.000 0.00 0.00 30.25 4.26
181 182 4.499865 CGTTCATAGGGGTGAGTGTATGAG 60.500 50.000 0.00 0.00 34.28 2.90
183 184 3.132289 ACGTTCATAGGGGTGAGTGTATG 59.868 47.826 0.00 0.00 0.00 2.39
184 185 3.371965 ACGTTCATAGGGGTGAGTGTAT 58.628 45.455 0.00 0.00 0.00 2.29
185 186 2.811410 ACGTTCATAGGGGTGAGTGTA 58.189 47.619 0.00 0.00 0.00 2.90
186 187 1.640917 ACGTTCATAGGGGTGAGTGT 58.359 50.000 0.00 0.00 0.00 3.55
187 188 2.479049 CGTACGTTCATAGGGGTGAGTG 60.479 54.545 7.22 0.00 0.00 3.51
188 189 1.747355 CGTACGTTCATAGGGGTGAGT 59.253 52.381 7.22 0.00 0.00 3.41
189 190 1.535437 GCGTACGTTCATAGGGGTGAG 60.535 57.143 17.90 0.00 0.00 3.51
190 191 0.457035 GCGTACGTTCATAGGGGTGA 59.543 55.000 17.90 0.00 0.00 4.02
191 192 0.173935 TGCGTACGTTCATAGGGGTG 59.826 55.000 17.90 0.00 0.00 4.61
192 193 0.174162 GTGCGTACGTTCATAGGGGT 59.826 55.000 17.90 0.00 0.00 4.95
193 194 0.868602 CGTGCGTACGTTCATAGGGG 60.869 60.000 18.32 0.00 44.99 4.79
194 195 2.573802 CGTGCGTACGTTCATAGGG 58.426 57.895 18.32 0.00 44.99 3.53
204 205 2.527100 GGATAGGATATGCGTGCGTAC 58.473 52.381 0.00 0.00 0.00 3.67
205 206 1.475280 GGGATAGGATATGCGTGCGTA 59.525 52.381 0.00 0.00 0.00 4.42
206 207 0.246635 GGGATAGGATATGCGTGCGT 59.753 55.000 0.00 0.00 0.00 5.24
207 208 0.532573 AGGGATAGGATATGCGTGCG 59.467 55.000 0.00 0.00 0.00 5.34
208 209 3.384789 TCATAGGGATAGGATATGCGTGC 59.615 47.826 0.00 0.00 0.00 5.34
209 210 4.500545 GCTCATAGGGATAGGATATGCGTG 60.501 50.000 0.00 0.00 0.00 5.34
210 211 3.639094 GCTCATAGGGATAGGATATGCGT 59.361 47.826 0.00 0.00 0.00 5.24
211 212 3.638627 TGCTCATAGGGATAGGATATGCG 59.361 47.826 0.00 0.00 0.00 4.73
212 213 4.202305 GGTGCTCATAGGGATAGGATATGC 60.202 50.000 0.00 0.00 0.00 3.14
213 214 5.215069 AGGTGCTCATAGGGATAGGATATG 58.785 45.833 0.00 0.00 0.00 1.78
214 215 5.495710 AGGTGCTCATAGGGATAGGATAT 57.504 43.478 0.00 0.00 0.00 1.63
215 216 4.974933 AGGTGCTCATAGGGATAGGATA 57.025 45.455 0.00 0.00 0.00 2.59
216 217 3.862600 AGGTGCTCATAGGGATAGGAT 57.137 47.619 0.00 0.00 0.00 3.24
217 218 3.511477 GAAGGTGCTCATAGGGATAGGA 58.489 50.000 0.00 0.00 0.00 2.94
218 219 2.232452 CGAAGGTGCTCATAGGGATAGG 59.768 54.545 0.00 0.00 0.00 2.57
219 220 3.157881 TCGAAGGTGCTCATAGGGATAG 58.842 50.000 0.00 0.00 0.00 2.08
220 221 3.238788 TCGAAGGTGCTCATAGGGATA 57.761 47.619 0.00 0.00 0.00 2.59
221 222 2.088104 TCGAAGGTGCTCATAGGGAT 57.912 50.000 0.00 0.00 0.00 3.85
222 223 1.860641 TTCGAAGGTGCTCATAGGGA 58.139 50.000 0.00 0.00 0.00 4.20
223 224 2.168521 TCTTTCGAAGGTGCTCATAGGG 59.831 50.000 7.20 0.00 0.00 3.53
224 225 3.118956 AGTCTTTCGAAGGTGCTCATAGG 60.119 47.826 7.20 0.00 0.00 2.57
225 226 3.862267 CAGTCTTTCGAAGGTGCTCATAG 59.138 47.826 7.20 0.00 0.00 2.23
226 227 3.509967 TCAGTCTTTCGAAGGTGCTCATA 59.490 43.478 7.20 0.00 0.00 2.15
227 228 2.300152 TCAGTCTTTCGAAGGTGCTCAT 59.700 45.455 7.20 0.00 0.00 2.90
228 229 1.686587 TCAGTCTTTCGAAGGTGCTCA 59.313 47.619 7.20 0.00 0.00 4.26
234 235 0.737715 CCGGCTCAGTCTTTCGAAGG 60.738 60.000 0.00 0.00 0.00 3.46
241 242 1.123077 TGATATGCCGGCTCAGTCTT 58.877 50.000 29.70 5.10 0.00 3.01
265 266 5.952033 ACCTACTGTGACTTCGTAAATCTC 58.048 41.667 0.00 0.00 0.00 2.75
272 273 4.280174 ACAATGTACCTACTGTGACTTCGT 59.720 41.667 0.00 0.00 0.00 3.85
282 283 3.943381 TCGTCGATGACAATGTACCTACT 59.057 43.478 2.39 0.00 32.09 2.57
288 289 4.555718 CGTTTTCGTCGATGACAATGTA 57.444 40.909 14.82 0.00 38.65 2.29
304 305 1.420430 TCACTGGGAGGAGACGTTTT 58.580 50.000 0.00 0.00 0.00 2.43
305 306 1.420430 TTCACTGGGAGGAGACGTTT 58.580 50.000 0.00 0.00 0.00 3.60
320 321 0.237235 TTTCGGCGATGTGCTTTCAC 59.763 50.000 11.76 0.00 45.43 3.18
327 328 1.368641 TCAGGATTTTCGGCGATGTG 58.631 50.000 11.76 2.41 0.00 3.21
343 344 7.597743 GCTTGCATTATTCCTGGATTATTTCAG 59.402 37.037 0.00 0.00 0.00 3.02
353 355 3.005472 CCTGATGCTTGCATTATTCCTGG 59.995 47.826 9.59 6.24 0.00 4.45
380 382 3.087065 CCCGGTCCATCAGGGTTT 58.913 61.111 0.00 0.00 44.74 3.27
388 390 1.054406 CAGTGGTATCCCCGGTCCAT 61.054 60.000 0.00 0.00 35.15 3.41
392 394 1.269703 GGAACAGTGGTATCCCCGGT 61.270 60.000 0.00 0.00 35.15 5.28
394 396 0.464452 GAGGAACAGTGGTATCCCCG 59.536 60.000 7.92 0.00 35.15 5.73
407 409 7.227512 CACTTATGATTGGATGGTTAGAGGAAC 59.772 40.741 0.00 0.00 37.31 3.62
409 411 6.183361 CCACTTATGATTGGATGGTTAGAGGA 60.183 42.308 0.00 0.00 34.46 3.71
433 435 4.457466 TGTTTCTAAGAAGTGGTGAACCC 58.543 43.478 0.00 0.00 34.29 4.11
439 441 5.183904 GGCATCAATGTTTCTAAGAAGTGGT 59.816 40.000 0.00 0.00 0.00 4.16
495 500 5.347620 TTTTGCTAGACGGAATAGCCTTA 57.652 39.130 11.68 0.00 44.11 2.69
524 529 1.131883 GCGCTCAGCAAAATGAGTCAT 59.868 47.619 0.00 0.00 46.93 3.06
525 531 0.518636 GCGCTCAGCAAAATGAGTCA 59.481 50.000 0.00 0.00 46.93 3.41
544 550 5.995282 TGTACAGTTCAAGTGGTTGGATAAG 59.005 40.000 0.00 0.00 34.09 1.73
600 606 7.161829 ACTTATATTAACACAACTCGCATCG 57.838 36.000 0.00 0.00 0.00 3.84
628 634 5.872617 TGTATGCCATCTGCGTATAATAACC 59.127 40.000 0.00 0.00 43.16 2.85
641 647 1.345741 CATCGGAGGTGTATGCCATCT 59.654 52.381 0.00 0.00 37.17 2.90
668 674 1.421268 AGATGCTGTTGTGGTCAAGGA 59.579 47.619 0.00 0.00 33.97 3.36
799 809 2.106332 GGGATCCGAACGATGCGT 59.894 61.111 5.45 0.00 43.97 5.24
821 831 6.482308 GTGGCTACGGAGTACATCAAATTAAT 59.518 38.462 0.00 0.00 45.11 1.40
822 832 5.813672 GTGGCTACGGAGTACATCAAATTAA 59.186 40.000 0.00 0.00 45.11 1.40
823 833 5.128171 AGTGGCTACGGAGTACATCAAATTA 59.872 40.000 0.00 0.00 45.11 1.40
824 834 4.081087 AGTGGCTACGGAGTACATCAAATT 60.081 41.667 0.00 0.00 45.11 1.82
870 881 5.514204 CGCGTATATATAGCAAGTTGGGTAC 59.486 44.000 4.75 0.00 0.00 3.34
875 886 4.201589 GGTGCGCGTATATATAGCAAGTTG 60.202 45.833 8.43 0.00 39.67 3.16
893 904 1.446792 CCTGTGTAGAGCTGGTGCG 60.447 63.158 0.00 0.00 45.42 5.34
956 967 3.362706 AGCTCCGTTTCTCTATACCACA 58.637 45.455 0.00 0.00 0.00 4.17
1308 1322 5.450137 CCTCCATATTAGGCGTTATACGGAG 60.450 48.000 16.55 16.55 42.82 4.63
1472 1486 7.069950 TCTGTTGCAGGTTATCTACAGATGTAT 59.930 37.037 9.05 0.00 37.62 2.29
1578 1592 7.391833 GGATTGATCACAGGTTTAGAACTCTTT 59.608 37.037 0.00 0.00 0.00 2.52
1728 1742 6.570186 GCAATGTGTATTTTGTCACCATGAGA 60.570 38.462 0.00 0.00 34.14 3.27
2350 2369 9.262358 GGCAAATGGTTGTTTAAATTACTAACA 57.738 29.630 0.00 0.00 37.06 2.41
2379 2398 3.046374 GAGGTTAAGAATAGGGCCCTCA 58.954 50.000 32.80 15.88 37.53 3.86
2479 2498 3.118261 TCTTTTGGCAAGGAGATAGCGAT 60.118 43.478 10.26 0.00 0.00 4.58
2621 2641 4.097892 CAGTTGGAAAGGTAAACTGCTGTT 59.902 41.667 2.72 2.72 42.93 3.16
2926 2947 8.861086 GGTGGTCTCTCTATACTTCAATATGAA 58.139 37.037 0.00 0.00 34.79 2.57
2927 2948 8.004801 TGGTGGTCTCTCTATACTTCAATATGA 58.995 37.037 0.00 0.00 0.00 2.15
3348 3369 0.534203 GGTTCGGCCTTCACAGACAA 60.534 55.000 0.00 0.00 0.00 3.18
3526 3547 0.322816 ACCTACATGCTGGCCAACTG 60.323 55.000 7.01 7.12 0.00 3.16
3644 3665 6.879276 AGTTAGAAAGGCAGTTTTCCTAAC 57.121 37.500 0.00 0.00 37.70 2.34
3675 3696 2.561209 TCTAACAGCCCCATACTCCA 57.439 50.000 0.00 0.00 0.00 3.86
4420 4445 4.466370 AGTCTTCCGGAACTGACATATGAA 59.534 41.667 28.48 1.93 32.41 2.57
5198 5226 4.228438 TCTCCTGTACTGATGAGGAAGAGA 59.772 45.833 0.60 0.00 35.43 3.10
5558 5586 0.620410 ACCATCATCCCCTTCACCGA 60.620 55.000 0.00 0.00 0.00 4.69
5675 5703 2.105128 CGGCCACGTCCATCTCTC 59.895 66.667 2.24 0.00 34.81 3.20
5831 5859 1.675310 CATGGTGCTGAAAGGCCGA 60.675 57.895 0.00 0.00 0.00 5.54
5837 5865 0.680921 GGCTAGCCATGGTGCTGAAA 60.681 55.000 29.33 0.00 42.77 2.69
6486 6527 6.644347 AGACTGAATGTACCATTTGAGTAGG 58.356 40.000 0.00 0.00 0.00 3.18
6502 6543 5.752472 CACGCTTGATCTGATTAGACTGAAT 59.248 40.000 0.00 0.00 35.34 2.57
6524 6568 1.227438 ACATGGCGCCCGTATACAC 60.227 57.895 26.77 0.00 0.00 2.90
6537 6581 3.190327 TGTCAAGTTATTTCCGCACATGG 59.810 43.478 0.00 0.00 0.00 3.66
6539 6583 4.699735 TCATGTCAAGTTATTTCCGCACAT 59.300 37.500 0.00 0.00 0.00 3.21
6546 6590 5.863935 GTGCCCTTTCATGTCAAGTTATTTC 59.136 40.000 0.00 0.00 0.00 2.17
6550 6594 4.098914 AGTGCCCTTTCATGTCAAGTTA 57.901 40.909 0.00 0.00 0.00 2.24
6565 6609 5.049680 CCATCACGTAATGTTAATAGTGCCC 60.050 44.000 0.00 0.00 0.00 5.36
6567 6611 6.838198 TCCATCACGTAATGTTAATAGTGC 57.162 37.500 0.00 0.00 0.00 4.40
6599 6643 4.024048 AGTGTTGACATTTCAAGCTTACGG 60.024 41.667 0.00 0.00 42.60 4.02
6601 6645 6.198966 CCAAAGTGTTGACATTTCAAGCTTAC 59.801 38.462 0.00 0.00 42.60 2.34
6677 6724 8.731275 ATTCAACCATATTCGTTCTGATGTTA 57.269 30.769 0.00 0.00 0.00 2.41
6691 6750 8.199449 CAGGCTTGTTAATCAATTCAACCATAT 58.801 33.333 0.00 0.00 35.35 1.78
6723 6782 8.861086 AGTACATAATTCAGACGGTTCTCATAT 58.139 33.333 0.00 0.00 0.00 1.78
6727 6786 6.331061 ACAGTACATAATTCAGACGGTTCTC 58.669 40.000 0.00 0.00 0.00 2.87
6769 6828 1.416373 GTCCGGTCACTTCTTTCGTC 58.584 55.000 0.00 0.00 0.00 4.20
6770 6829 0.318445 CGTCCGGTCACTTCTTTCGT 60.318 55.000 0.00 0.00 0.00 3.85
6772 6831 1.137513 CACGTCCGGTCACTTCTTTC 58.862 55.000 0.00 0.00 0.00 2.62
6804 6863 0.806868 ATGTGCTTTCAGGTCATGCG 59.193 50.000 0.00 0.00 0.00 4.73
6838 6897 2.741211 GAAACGCCCGGTCTCACC 60.741 66.667 0.00 0.00 34.05 4.02
6840 6899 1.375396 CATGAAACGCCCGGTCTCA 60.375 57.895 0.00 0.00 0.00 3.27
6849 6908 0.169009 GCAAGTCCTCCATGAAACGC 59.831 55.000 0.00 0.00 0.00 4.84
6861 6920 2.229543 TCATGTGCTTTCATGCAAGTCC 59.770 45.455 6.95 0.00 45.12 3.85
6968 7027 7.103641 AGAAATGTAAGAGCGTTTAGATGGAA 58.896 34.615 0.00 0.00 0.00 3.53
6970 7029 6.910536 AGAAATGTAAGAGCGTTTAGATGG 57.089 37.500 0.00 0.00 0.00 3.51
6971 7030 9.690434 GTAAAGAAATGTAAGAGCGTTTAGATG 57.310 33.333 0.00 0.00 0.00 2.90
6972 7031 9.431887 TGTAAAGAAATGTAAGAGCGTTTAGAT 57.568 29.630 0.00 0.00 0.00 1.98
6973 7032 8.821147 TGTAAAGAAATGTAAGAGCGTTTAGA 57.179 30.769 0.00 0.00 0.00 2.10
6974 7033 8.922676 TCTGTAAAGAAATGTAAGAGCGTTTAG 58.077 33.333 0.00 0.00 0.00 1.85
6975 7034 8.821147 TCTGTAAAGAAATGTAAGAGCGTTTA 57.179 30.769 0.00 0.00 0.00 2.01
6976 7035 7.095187 CCTCTGTAAAGAAATGTAAGAGCGTTT 60.095 37.037 0.00 0.00 0.00 3.60
6977 7036 6.369065 CCTCTGTAAAGAAATGTAAGAGCGTT 59.631 38.462 0.00 0.00 0.00 4.84
6978 7037 5.869888 CCTCTGTAAAGAAATGTAAGAGCGT 59.130 40.000 0.00 0.00 0.00 5.07
6979 7038 6.100004 TCCTCTGTAAAGAAATGTAAGAGCG 58.900 40.000 0.00 0.00 0.00 5.03
6980 7039 7.907214 TTCCTCTGTAAAGAAATGTAAGAGC 57.093 36.000 0.00 0.00 0.00 4.09
6995 7054 9.595823 CCGATTTTAACTTCTATTTCCTCTGTA 57.404 33.333 0.00 0.00 0.00 2.74
6996 7055 8.101419 ACCGATTTTAACTTCTATTTCCTCTGT 58.899 33.333 0.00 0.00 0.00 3.41
6997 7056 8.494016 ACCGATTTTAACTTCTATTTCCTCTG 57.506 34.615 0.00 0.00 0.00 3.35
6998 7057 7.491696 CGACCGATTTTAACTTCTATTTCCTCT 59.508 37.037 0.00 0.00 0.00 3.69
6999 7058 7.277319 ACGACCGATTTTAACTTCTATTTCCTC 59.723 37.037 0.00 0.00 0.00 3.71
7000 7059 7.101700 ACGACCGATTTTAACTTCTATTTCCT 58.898 34.615 0.00 0.00 0.00 3.36
7001 7060 7.299787 ACGACCGATTTTAACTTCTATTTCC 57.700 36.000 0.00 0.00 0.00 3.13
7002 7061 9.680946 GTTACGACCGATTTTAACTTCTATTTC 57.319 33.333 0.00 0.00 0.00 2.17
7003 7062 9.428097 AGTTACGACCGATTTTAACTTCTATTT 57.572 29.630 0.00 0.00 32.06 1.40
7004 7063 8.992835 AGTTACGACCGATTTTAACTTCTATT 57.007 30.769 0.00 0.00 32.06 1.73
7005 7064 9.508567 GTAGTTACGACCGATTTTAACTTCTAT 57.491 33.333 7.95 0.00 36.43 1.98
7006 7065 8.511321 TGTAGTTACGACCGATTTTAACTTCTA 58.489 33.333 7.95 0.00 36.43 2.10
7007 7066 7.327032 GTGTAGTTACGACCGATTTTAACTTCT 59.673 37.037 7.95 0.00 36.43 2.85
7008 7067 7.410835 GGTGTAGTTACGACCGATTTTAACTTC 60.411 40.741 7.95 5.13 36.43 3.01
7069 7130 8.781067 GCAAAAATCATGCGATAATGTTAGTA 57.219 30.769 0.00 0.00 33.57 1.82
7070 7131 7.684062 GCAAAAATCATGCGATAATGTTAGT 57.316 32.000 0.00 0.00 33.57 2.24
7147 7334 0.244721 TGCTCAGTCCAGTCATGACG 59.755 55.000 19.85 14.20 37.80 4.35
7174 7361 9.991906 AAAATATAATGCTGTAGTATGTACGGT 57.008 29.630 0.00 0.00 0.00 4.83
7239 7426 1.619827 CCATTCCATGGTGCAACAGTT 59.380 47.619 11.62 0.00 45.54 3.16
7252 7439 3.697542 CTGCAGTCATTGATTCCATTCCA 59.302 43.478 5.25 0.00 0.00 3.53
7439 7626 9.405587 CATGTTCACGTTTTCTAATACCAAATT 57.594 29.630 0.00 0.00 0.00 1.82
7500 7687 2.411409 CGCCCAATCGACAAAATTTTGG 59.589 45.455 29.37 15.97 42.34 3.28
7767 7955 2.409870 CCATGCCCTCCAGTTTCGC 61.410 63.158 0.00 0.00 0.00 4.70
7768 7956 0.745845 CTCCATGCCCTCCAGTTTCG 60.746 60.000 0.00 0.00 0.00 3.46
7772 7960 2.285969 AGCTCCATGCCCTCCAGT 60.286 61.111 0.00 0.00 44.23 4.00
7918 8106 4.954118 TCTCCACGGGGGTGCACT 62.954 66.667 17.98 0.00 38.11 4.40
8165 8353 2.412323 ATGCATGGACAAGCGGCTG 61.412 57.895 1.81 0.10 0.00 4.85
8170 8358 4.224433 CGATTATTCATGCATGGACAAGC 58.776 43.478 25.97 15.48 0.00 4.01
8213 8404 1.197036 GGAAAAAGGGAAAGCGAGACG 59.803 52.381 0.00 0.00 0.00 4.18
8298 8504 2.354188 TGCAACTCGTCGTGGTCG 60.354 61.111 0.00 0.00 38.55 4.79
8299 8505 1.004277 CTCTGCAACTCGTCGTGGTC 61.004 60.000 0.00 0.00 0.00 4.02
8300 8506 1.007271 CTCTGCAACTCGTCGTGGT 60.007 57.895 0.00 0.00 0.00 4.16
8301 8507 0.109086 ATCTCTGCAACTCGTCGTGG 60.109 55.000 0.00 0.00 0.00 4.94
8302 8508 0.987715 CATCTCTGCAACTCGTCGTG 59.012 55.000 0.00 0.00 0.00 4.35
8303 8509 0.881796 TCATCTCTGCAACTCGTCGT 59.118 50.000 0.00 0.00 0.00 4.34
8304 8510 1.982612 TTCATCTCTGCAACTCGTCG 58.017 50.000 0.00 0.00 0.00 5.12
8305 8511 6.595772 ATTTATTCATCTCTGCAACTCGTC 57.404 37.500 0.00 0.00 0.00 4.20
8306 8512 8.492673 TTTATTTATTCATCTCTGCAACTCGT 57.507 30.769 0.00 0.00 0.00 4.18
8372 8581 3.120041 GCGTTTGGTTAAATTGCACACT 58.880 40.909 0.00 0.00 33.12 3.55
8378 8587 6.199908 TCAATTGAGTGCGTTTGGTTAAATTG 59.800 34.615 3.38 0.00 35.06 2.32
8386 8595 3.670055 GTGATTCAATTGAGTGCGTTTGG 59.330 43.478 8.35 0.00 0.00 3.28
8389 8598 2.665519 GCGTGATTCAATTGAGTGCGTT 60.666 45.455 8.35 0.00 0.00 4.84
8414 8623 5.481732 GATGTAAGCACATACGTACATCG 57.518 43.478 12.50 0.00 45.40 3.84
8649 8862 9.302345 TCGTTTTGCATAAGTCAAATTTTGTAA 57.698 25.926 8.89 0.00 33.94 2.41
8650 8863 8.858003 TCGTTTTGCATAAGTCAAATTTTGTA 57.142 26.923 8.89 0.00 33.94 2.41
8656 8869 6.363357 GCTTTCTCGTTTTGCATAAGTCAAAT 59.637 34.615 0.00 0.00 33.94 2.32
8668 8881 5.614887 GCAGGTACTTAGCTTTCTCGTTTTG 60.615 44.000 0.00 0.00 34.60 2.44
8669 8882 4.451435 GCAGGTACTTAGCTTTCTCGTTTT 59.549 41.667 0.00 0.00 34.60 2.43
8708 8921 2.244651 GGAAGCGTGCGTGTCTGTT 61.245 57.895 0.00 0.00 0.00 3.16
8758 9987 5.523916 TCGATTCCTATTGCTGCTACTTTTC 59.476 40.000 0.00 0.00 0.00 2.29
8786 10015 0.380733 TAGCGAGTCTGTATGTGCGG 59.619 55.000 0.00 0.00 0.00 5.69
8788 10017 4.750952 TCTATAGCGAGTCTGTATGTGC 57.249 45.455 0.00 0.00 0.00 4.57
8792 10147 8.634444 AGTCAAAAATCTATAGCGAGTCTGTAT 58.366 33.333 0.00 0.00 0.00 2.29
8797 10152 9.344309 GGTATAGTCAAAAATCTATAGCGAGTC 57.656 37.037 0.00 0.00 37.64 3.36
8801 10156 8.827177 TTGGGTATAGTCAAAAATCTATAGCG 57.173 34.615 12.15 0.00 43.03 4.26
8806 10161 8.553153 TGGTCATTGGGTATAGTCAAAAATCTA 58.447 33.333 0.00 0.00 0.00 1.98
8808 10163 7.639113 TGGTCATTGGGTATAGTCAAAAATC 57.361 36.000 0.00 0.00 0.00 2.17
8813 10168 5.665360 TGAGATGGTCATTGGGTATAGTCAA 59.335 40.000 0.00 0.00 0.00 3.18
8826 10181 5.188555 ACATGTAGTTGACTGAGATGGTCAT 59.811 40.000 0.00 0.00 42.26 3.06
8839 10194 7.001674 ACCTCCAAACATAAACATGTAGTTGA 58.998 34.615 0.00 0.00 41.19 3.18
8842 10197 5.710099 CCACCTCCAAACATAAACATGTAGT 59.290 40.000 0.00 0.00 33.81 2.73
8844 10199 5.013547 CCCACCTCCAAACATAAACATGTA 58.986 41.667 0.00 0.00 33.81 2.29
8845 10200 3.831911 CCCACCTCCAAACATAAACATGT 59.168 43.478 0.00 0.00 36.10 3.21
8921 10276 5.163703 CGCCAGATCTACACTATAGATGGAC 60.164 48.000 6.78 0.00 34.68 4.02
8935 10290 9.725019 AATGATAAATTATGTTCGCCAGATCTA 57.275 29.630 0.00 0.00 0.00 1.98
8967 10322 3.617531 GCGAACAAAAGGATCTGGAGAGA 60.618 47.826 0.00 0.00 0.00 3.10
8996 10351 3.524095 TGGGAGGAAAGCAAGAAATCA 57.476 42.857 0.00 0.00 0.00 2.57
9063 10850 3.849911 TCACACCAATTTTTGCGTGAAA 58.150 36.364 12.61 0.00 38.08 2.69
9065 10852 3.182967 GTTCACACCAATTTTTGCGTGA 58.817 40.909 12.61 9.70 38.76 4.35
9121 11044 4.160439 TCAGATGGTAGGCTAGTTGAGTTG 59.840 45.833 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.