Multiple sequence alignment - TraesCS3A01G154300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G154300 chr3A 100.000 2288 0 0 1 2288 145633971 145636258 0.000000e+00 4226
1 TraesCS3A01G154300 chr3A 92.955 1320 86 6 97 1412 598875268 598873952 0.000000e+00 1916
2 TraesCS3A01G154300 chr3A 95.327 107 4 1 1 107 420107661 420107766 3.910000e-38 169
3 TraesCS3A01G154300 chr3A 91.057 123 7 4 1 120 35323309 35323188 1.820000e-36 163
4 TraesCS3A01G154300 chr4D 92.483 1623 110 8 97 1717 460669909 460668297 0.000000e+00 2311
5 TraesCS3A01G154300 chr1D 92.436 1613 115 7 97 1708 467504894 467506500 0.000000e+00 2296
6 TraesCS3A01G154300 chr5D 92.398 1618 94 5 97 1712 353957449 353959039 0.000000e+00 2279
7 TraesCS3A01G154300 chr5D 91.538 1619 108 13 97 1713 39089962 39091553 0.000000e+00 2204
8 TraesCS3A01G154300 chr7A 91.509 1637 103 17 97 1707 25850648 25852274 0.000000e+00 2220
9 TraesCS3A01G154300 chr7A 94.545 110 5 1 1 109 400292103 400291994 3.910000e-38 169
10 TraesCS3A01G154300 chr7A 94.545 110 5 1 1 109 400341244 400341135 3.910000e-38 169
11 TraesCS3A01G154300 chr7D 91.296 1620 132 8 97 1712 501629615 501631229 0.000000e+00 2202
12 TraesCS3A01G154300 chr3D 91.589 1617 98 11 97 1712 124068565 124066986 0.000000e+00 2198
13 TraesCS3A01G154300 chr5A 90.426 1619 126 13 97 1708 312260110 312258514 0.000000e+00 2104
14 TraesCS3A01G154300 chr5A 92.241 116 7 2 1 116 652989828 652989941 1.820000e-36 163
15 TraesCS3A01G154300 chr6D 93.273 1219 74 5 97 1313 56319658 56320870 0.000000e+00 1790
16 TraesCS3A01G154300 chr6D 94.228 797 42 4 97 892 11696479 11695686 0.000000e+00 1214
17 TraesCS3A01G154300 chr6A 99.010 101 1 0 1 101 197440438 197440538 5.020000e-42 182
18 TraesCS3A01G154300 chr6A 95.370 108 4 1 1 108 497313454 497313348 1.090000e-38 171
19 TraesCS3A01G154300 chr2A 99.010 101 1 0 1 101 562610579 562610479 5.020000e-42 182
20 TraesCS3A01G154300 chr2D 88.060 134 12 4 1 133 181818341 181818211 3.040000e-34 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G154300 chr3A 145633971 145636258 2287 False 4226 4226 100.000 1 2288 1 chr3A.!!$F1 2287
1 TraesCS3A01G154300 chr3A 598873952 598875268 1316 True 1916 1916 92.955 97 1412 1 chr3A.!!$R2 1315
2 TraesCS3A01G154300 chr4D 460668297 460669909 1612 True 2311 2311 92.483 97 1717 1 chr4D.!!$R1 1620
3 TraesCS3A01G154300 chr1D 467504894 467506500 1606 False 2296 2296 92.436 97 1708 1 chr1D.!!$F1 1611
4 TraesCS3A01G154300 chr5D 353957449 353959039 1590 False 2279 2279 92.398 97 1712 1 chr5D.!!$F2 1615
5 TraesCS3A01G154300 chr5D 39089962 39091553 1591 False 2204 2204 91.538 97 1713 1 chr5D.!!$F1 1616
6 TraesCS3A01G154300 chr7A 25850648 25852274 1626 False 2220 2220 91.509 97 1707 1 chr7A.!!$F1 1610
7 TraesCS3A01G154300 chr7D 501629615 501631229 1614 False 2202 2202 91.296 97 1712 1 chr7D.!!$F1 1615
8 TraesCS3A01G154300 chr3D 124066986 124068565 1579 True 2198 2198 91.589 97 1712 1 chr3D.!!$R1 1615
9 TraesCS3A01G154300 chr5A 312258514 312260110 1596 True 2104 2104 90.426 97 1708 1 chr5A.!!$R1 1611
10 TraesCS3A01G154300 chr6D 56319658 56320870 1212 False 1790 1790 93.273 97 1313 1 chr6D.!!$F1 1216
11 TraesCS3A01G154300 chr6D 11695686 11696479 793 True 1214 1214 94.228 97 892 1 chr6D.!!$R1 795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 103 0.253894 TGGAGACGTATCACCCTCGA 59.746 55.0 12.92 0.0 34.82 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1909 1943 0.029834 CAACAGGAATATGCCGCAGC 59.97 55.0 0.0 0.0 40.48 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 8.721019 AATTGCATATAAAACATCCAAGGTTG 57.279 30.769 0.00 0.00 0.00 3.77
42 43 7.473735 TTGCATATAAAACATCCAAGGTTGA 57.526 32.000 4.26 0.00 0.00 3.18
43 44 7.658525 TGCATATAAAACATCCAAGGTTGAT 57.341 32.000 4.26 0.00 0.00 2.57
44 45 8.759481 TGCATATAAAACATCCAAGGTTGATA 57.241 30.769 4.26 0.00 0.00 2.15
45 46 9.194972 TGCATATAAAACATCCAAGGTTGATAA 57.805 29.630 4.26 0.00 0.00 1.75
102 103 0.253894 TGGAGACGTATCACCCTCGA 59.746 55.000 12.92 0.00 34.82 4.04
223 224 5.363005 GTCATTAGAAGCCCAGTAGGTCTTA 59.637 44.000 0.00 0.00 38.26 2.10
255 256 5.191722 ACCACTTCTTCCTCCATTTAGCATA 59.808 40.000 0.00 0.00 0.00 3.14
331 332 2.030027 TCACTGGGTCAGGAATCAGT 57.970 50.000 0.00 0.00 40.62 3.41
370 371 2.758089 GGCCTTCATGAGCACTGCG 61.758 63.158 8.97 0.00 0.00 5.18
449 450 1.202758 TCTTGAACTTGGTGCGGTCAT 60.203 47.619 0.00 0.00 0.00 3.06
494 495 0.557729 CCTCCAGCCAATACCCCAAT 59.442 55.000 0.00 0.00 0.00 3.16
549 551 0.769776 ATGGCGATGGGAGGAGGAAT 60.770 55.000 0.00 0.00 0.00 3.01
555 557 2.105477 CGATGGGAGGAGGAATGTTGAT 59.895 50.000 0.00 0.00 0.00 2.57
597 602 1.272807 GTAAGTAGTGGTGGGCAGGA 58.727 55.000 0.00 0.00 0.00 3.86
612 617 5.248477 GTGGGCAGGATGAGTAAATATAGGA 59.752 44.000 0.00 0.00 39.69 2.94
641 652 2.647299 AGAGGAGGAGAAGAGTGACAGA 59.353 50.000 0.00 0.00 0.00 3.41
644 655 2.491693 GGAGGAGAAGAGTGACAGACAG 59.508 54.545 0.00 0.00 0.00 3.51
701 712 4.226427 ACTGCTCTTCAATTAGCCATGA 57.774 40.909 0.00 0.00 37.97 3.07
766 777 2.435805 GGAGAGTAATGAGATGGGCACA 59.564 50.000 0.00 0.00 0.00 4.57
836 847 1.079819 CCCGACGAGATTGTGCTGT 60.080 57.895 0.00 0.00 0.00 4.40
884 895 3.680786 CTGAGGGTGGCGACGACA 61.681 66.667 0.00 0.00 0.00 4.35
1104 1118 3.233355 GGTCAAGCTGATGAACGGT 57.767 52.632 0.00 0.00 0.00 4.83
1162 1176 3.133542 AGCCGTTCATCAGATCAAGATCA 59.866 43.478 12.21 0.00 40.22 2.92
1228 1242 6.978674 AGGTCATAATCTTCGACAAGGATA 57.021 37.500 0.00 0.00 0.00 2.59
1254 1268 1.593209 GGTCGTCAACAAGTGCGGA 60.593 57.895 0.00 0.00 0.00 5.54
1309 1324 2.356667 GGGCCACCTCTTTCCAGG 59.643 66.667 4.39 0.00 39.80 4.45
1313 1328 0.919710 GCCACCTCTTTCCAGGGTAT 59.080 55.000 0.00 0.00 37.96 2.73
1314 1329 1.285078 GCCACCTCTTTCCAGGGTATT 59.715 52.381 0.00 0.00 37.96 1.89
1319 1334 5.104109 CCACCTCTTTCCAGGGTATTTATCA 60.104 44.000 0.00 0.00 37.96 2.15
1343 1358 6.882610 AGTCTGCTTTGAACATGTTTATGA 57.117 33.333 13.36 0.00 37.73 2.15
1374 1389 5.885912 AGTTGAACTGTTATGAAGTGTGGTT 59.114 36.000 0.00 0.00 0.00 3.67
1375 1390 6.377146 AGTTGAACTGTTATGAAGTGTGGTTT 59.623 34.615 0.00 0.00 0.00 3.27
1385 1400 9.855021 GTTATGAAGTGTGGTTTTGCTTATATT 57.145 29.630 0.00 0.00 0.00 1.28
1417 1450 6.049149 TGCTAGTTCATGCTCTGTTTATACC 58.951 40.000 0.00 0.00 0.00 2.73
1424 1457 3.950397 TGCTCTGTTTATACCCTGTTGG 58.050 45.455 0.00 0.00 41.37 3.77
1439 1472 3.084039 CTGTTGGGCTTATGATGTGTGT 58.916 45.455 0.00 0.00 0.00 3.72
1440 1473 3.081061 TGTTGGGCTTATGATGTGTGTC 58.919 45.455 0.00 0.00 0.00 3.67
1452 1485 1.590525 GTGTGTCGCCGAAGTGTGA 60.591 57.895 0.00 0.00 0.00 3.58
1480 1514 2.303022 CCTCACCAACTAGCCAAAGAGA 59.697 50.000 0.00 0.00 0.00 3.10
1496 1530 2.621070 AGAGATTACCACACACCAGGT 58.379 47.619 0.00 0.00 41.89 4.00
1540 1574 2.956333 GCTTTGGGTTTGTCCACTAACT 59.044 45.455 4.42 0.00 36.38 2.24
1545 1579 2.890945 GGGTTTGTCCACTAACTTGCAT 59.109 45.455 4.42 0.00 38.11 3.96
1572 1606 3.511146 CCAAATATCAGGCAGTGTGGTTT 59.489 43.478 0.00 0.00 0.00 3.27
1679 1713 4.455533 GGTGAAGAAGTGTATGCAATGTGA 59.544 41.667 0.00 0.00 0.00 3.58
1683 1717 6.934083 TGAAGAAGTGTATGCAATGTGAGTAA 59.066 34.615 0.00 0.00 0.00 2.24
1717 1751 2.806244 CAACCAAACACGTCCTAAGAGG 59.194 50.000 0.00 0.00 36.46 3.69
1718 1752 1.270678 ACCAAACACGTCCTAAGAGGC 60.271 52.381 0.00 0.00 34.61 4.70
1719 1753 1.270625 CCAAACACGTCCTAAGAGGCA 60.271 52.381 0.00 0.00 34.61 4.75
1720 1754 1.798813 CAAACACGTCCTAAGAGGCAC 59.201 52.381 0.00 0.00 34.61 5.01
1721 1755 0.320697 AACACGTCCTAAGAGGCACC 59.679 55.000 0.00 0.00 34.61 5.01
1722 1756 1.153823 CACGTCCTAAGAGGCACCG 60.154 63.158 0.00 0.00 34.61 4.94
1723 1757 2.202756 CGTCCTAAGAGGCACCGC 60.203 66.667 0.00 0.00 34.61 5.68
1724 1758 2.202756 GTCCTAAGAGGCACCGCG 60.203 66.667 0.00 0.00 34.61 6.46
1725 1759 2.361992 TCCTAAGAGGCACCGCGA 60.362 61.111 8.23 0.00 34.61 5.87
1726 1760 2.105128 CCTAAGAGGCACCGCGAG 59.895 66.667 8.23 0.00 0.00 5.03
1727 1761 2.711922 CCTAAGAGGCACCGCGAGT 61.712 63.158 8.23 0.00 0.00 4.18
1728 1762 1.215647 CTAAGAGGCACCGCGAGTT 59.784 57.895 8.23 0.00 0.00 3.01
1729 1763 1.078759 CTAAGAGGCACCGCGAGTTG 61.079 60.000 8.23 2.28 0.00 3.16
1730 1764 1.812686 TAAGAGGCACCGCGAGTTGT 61.813 55.000 8.23 0.00 0.00 3.32
1731 1765 2.660258 AAGAGGCACCGCGAGTTGTT 62.660 55.000 8.23 0.00 0.00 2.83
1732 1766 2.665185 AGGCACCGCGAGTTGTTC 60.665 61.111 8.23 0.00 0.00 3.18
1733 1767 2.970324 GGCACCGCGAGTTGTTCA 60.970 61.111 8.23 0.00 0.00 3.18
1734 1768 2.248431 GCACCGCGAGTTGTTCAC 59.752 61.111 8.23 0.00 0.00 3.18
1735 1769 2.530497 GCACCGCGAGTTGTTCACA 61.530 57.895 8.23 0.00 0.00 3.58
1736 1770 1.564622 CACCGCGAGTTGTTCACAG 59.435 57.895 8.23 0.00 0.00 3.66
1737 1771 2.244651 ACCGCGAGTTGTTCACAGC 61.245 57.895 8.23 0.00 0.00 4.40
1738 1772 2.243957 CCGCGAGTTGTTCACAGCA 61.244 57.895 8.23 0.00 32.58 4.41
1739 1773 1.202568 CGCGAGTTGTTCACAGCAG 59.797 57.895 0.00 0.00 32.58 4.24
1740 1774 1.490693 CGCGAGTTGTTCACAGCAGT 61.491 55.000 0.00 0.00 32.58 4.40
1741 1775 1.497991 GCGAGTTGTTCACAGCAGTA 58.502 50.000 0.00 0.00 33.09 2.74
1742 1776 1.864711 GCGAGTTGTTCACAGCAGTAA 59.135 47.619 0.00 0.00 33.09 2.24
1743 1777 2.286833 GCGAGTTGTTCACAGCAGTAAA 59.713 45.455 0.00 0.00 33.09 2.01
1744 1778 3.242608 GCGAGTTGTTCACAGCAGTAAAA 60.243 43.478 0.00 0.00 33.09 1.52
1745 1779 4.729458 GCGAGTTGTTCACAGCAGTAAAAA 60.729 41.667 0.00 0.00 33.09 1.94
1746 1780 5.510671 CGAGTTGTTCACAGCAGTAAAAAT 58.489 37.500 0.00 0.00 0.00 1.82
1747 1781 5.971202 CGAGTTGTTCACAGCAGTAAAAATT 59.029 36.000 0.00 0.00 0.00 1.82
1748 1782 6.075415 CGAGTTGTTCACAGCAGTAAAAATTG 60.075 38.462 0.00 0.00 0.00 2.32
1749 1783 6.862209 AGTTGTTCACAGCAGTAAAAATTGA 58.138 32.000 0.00 0.00 0.00 2.57
1750 1784 7.319646 AGTTGTTCACAGCAGTAAAAATTGAA 58.680 30.769 0.00 0.00 0.00 2.69
1751 1785 7.816995 AGTTGTTCACAGCAGTAAAAATTGAAA 59.183 29.630 0.00 0.00 0.00 2.69
1752 1786 8.603181 GTTGTTCACAGCAGTAAAAATTGAAAT 58.397 29.630 0.00 0.00 0.00 2.17
1753 1787 8.715191 TGTTCACAGCAGTAAAAATTGAAATT 57.285 26.923 0.00 0.00 0.00 1.82
1754 1788 8.602328 TGTTCACAGCAGTAAAAATTGAAATTG 58.398 29.630 0.00 0.00 0.00 2.32
1755 1789 8.603181 GTTCACAGCAGTAAAAATTGAAATTGT 58.397 29.630 0.00 0.00 0.00 2.71
1756 1790 8.351495 TCACAGCAGTAAAAATTGAAATTGTC 57.649 30.769 0.00 0.00 0.00 3.18
1757 1791 8.196771 TCACAGCAGTAAAAATTGAAATTGTCT 58.803 29.630 0.00 0.00 0.00 3.41
1758 1792 9.462174 CACAGCAGTAAAAATTGAAATTGTCTA 57.538 29.630 0.00 0.00 0.00 2.59
1796 1830 4.766404 AAAAATCAAAAGAGACGCCGAT 57.234 36.364 0.00 0.00 0.00 4.18
1797 1831 5.873179 AAAAATCAAAAGAGACGCCGATA 57.127 34.783 0.00 0.00 0.00 2.92
1798 1832 5.470845 AAAATCAAAAGAGACGCCGATAG 57.529 39.130 0.00 0.00 0.00 2.08
1816 1850 5.070770 GATAGGAATCGAGCATGAGATGT 57.929 43.478 0.00 0.00 0.00 3.06
1817 1851 3.383620 AGGAATCGAGCATGAGATGTC 57.616 47.619 0.00 0.00 0.00 3.06
1818 1852 2.057316 GGAATCGAGCATGAGATGTCG 58.943 52.381 0.00 0.00 36.13 4.35
1819 1853 1.455030 GAATCGAGCATGAGATGTCGC 59.545 52.381 0.00 0.00 35.39 5.19
1820 1854 0.672889 ATCGAGCATGAGATGTCGCT 59.327 50.000 0.00 0.00 35.39 4.93
1821 1855 0.029967 TCGAGCATGAGATGTCGCTC 59.970 55.000 8.99 8.99 45.87 5.03
1822 1856 0.030504 CGAGCATGAGATGTCGCTCT 59.969 55.000 14.77 0.00 46.88 4.09
1823 1857 1.489574 GAGCATGAGATGTCGCTCTG 58.510 55.000 11.08 0.00 45.86 3.35
1824 1858 0.530211 AGCATGAGATGTCGCTCTGC 60.530 55.000 0.00 0.00 38.33 4.26
1825 1859 0.530211 GCATGAGATGTCGCTCTGCT 60.530 55.000 0.00 0.00 36.74 4.24
1826 1860 1.489574 CATGAGATGTCGCTCTGCTC 58.510 55.000 0.00 0.00 35.91 4.26
1827 1861 0.388659 ATGAGATGTCGCTCTGCTCC 59.611 55.000 0.00 0.00 35.91 4.70
1828 1862 0.967380 TGAGATGTCGCTCTGCTCCA 60.967 55.000 0.00 0.00 35.91 3.86
1829 1863 0.527385 GAGATGTCGCTCTGCTCCAC 60.527 60.000 0.00 0.00 32.16 4.02
1830 1864 1.216444 GATGTCGCTCTGCTCCACA 59.784 57.895 0.00 0.00 0.00 4.17
1832 1866 2.813042 GTCGCTCTGCTCCACAGC 60.813 66.667 0.00 0.00 46.76 4.40
1840 1874 2.510238 GCTCCACAGCGCTACCAG 60.510 66.667 10.99 4.93 35.39 4.00
1841 1875 2.510238 CTCCACAGCGCTACCAGC 60.510 66.667 10.99 0.00 38.02 4.85
1842 1876 4.082523 TCCACAGCGCTACCAGCC 62.083 66.667 10.99 0.00 38.18 4.85
1846 1880 4.537433 CAGCGCTACCAGCCCCTC 62.537 72.222 10.99 0.00 38.18 4.30
1849 1883 3.905678 CGCTACCAGCCCCTCGAG 61.906 72.222 5.13 5.13 38.18 4.04
1850 1884 2.760385 GCTACCAGCCCCTCGAGT 60.760 66.667 12.31 0.00 34.48 4.18
1851 1885 1.455217 GCTACCAGCCCCTCGAGTA 60.455 63.158 12.31 0.00 34.48 2.59
1852 1886 1.041447 GCTACCAGCCCCTCGAGTAA 61.041 60.000 12.31 0.00 34.48 2.24
1853 1887 1.481871 CTACCAGCCCCTCGAGTAAA 58.518 55.000 12.31 0.00 0.00 2.01
1854 1888 2.040178 CTACCAGCCCCTCGAGTAAAT 58.960 52.381 12.31 0.00 0.00 1.40
1855 1889 0.541863 ACCAGCCCCTCGAGTAAATG 59.458 55.000 12.31 4.93 0.00 2.32
1856 1890 0.179045 CCAGCCCCTCGAGTAAATGG 60.179 60.000 12.31 10.29 0.00 3.16
1857 1891 0.815615 CAGCCCCTCGAGTAAATGGC 60.816 60.000 12.31 14.14 39.17 4.40
1858 1892 1.526225 GCCCCTCGAGTAAATGGCC 60.526 63.158 12.31 0.00 32.74 5.36
1859 1893 1.912220 CCCCTCGAGTAAATGGCCA 59.088 57.895 8.56 8.56 0.00 5.36
1860 1894 0.179045 CCCCTCGAGTAAATGGCCAG 60.179 60.000 13.05 0.00 0.00 4.85
1861 1895 0.830648 CCCTCGAGTAAATGGCCAGA 59.169 55.000 13.05 0.00 0.00 3.86
1862 1896 1.473434 CCCTCGAGTAAATGGCCAGAC 60.473 57.143 13.05 9.47 0.00 3.51
1863 1897 1.560923 CTCGAGTAAATGGCCAGACG 58.439 55.000 13.05 10.32 0.00 4.18
1864 1898 0.892755 TCGAGTAAATGGCCAGACGT 59.107 50.000 13.05 0.00 0.00 4.34
1865 1899 0.999406 CGAGTAAATGGCCAGACGTG 59.001 55.000 13.05 3.68 0.00 4.49
1866 1900 1.403647 CGAGTAAATGGCCAGACGTGA 60.404 52.381 13.05 0.00 0.00 4.35
1867 1901 2.695359 GAGTAAATGGCCAGACGTGAA 58.305 47.619 13.05 0.00 0.00 3.18
1868 1902 2.415512 GAGTAAATGGCCAGACGTGAAC 59.584 50.000 13.05 2.28 0.00 3.18
1869 1903 2.147958 GTAAATGGCCAGACGTGAACA 58.852 47.619 13.05 0.00 0.00 3.18
1870 1904 1.686355 AAATGGCCAGACGTGAACAA 58.314 45.000 13.05 0.00 0.00 2.83
1871 1905 1.238439 AATGGCCAGACGTGAACAAG 58.762 50.000 13.05 0.00 0.00 3.16
1872 1906 1.237285 ATGGCCAGACGTGAACAAGC 61.237 55.000 13.05 0.00 0.00 4.01
1873 1907 1.891919 GGCCAGACGTGAACAAGCA 60.892 57.895 0.00 0.00 0.00 3.91
1874 1908 1.237285 GGCCAGACGTGAACAAGCAT 61.237 55.000 0.00 0.00 0.00 3.79
1875 1909 0.110056 GCCAGACGTGAACAAGCATG 60.110 55.000 0.00 0.00 0.00 4.06
1876 1910 0.110056 CCAGACGTGAACAAGCATGC 60.110 55.000 10.51 10.51 0.00 4.06
1877 1911 0.587768 CAGACGTGAACAAGCATGCA 59.412 50.000 21.98 0.00 0.00 3.96
1878 1912 1.198408 CAGACGTGAACAAGCATGCAT 59.802 47.619 21.98 4.57 0.00 3.96
1879 1913 1.466167 AGACGTGAACAAGCATGCATC 59.534 47.619 21.98 12.60 0.00 3.91
1880 1914 0.166597 ACGTGAACAAGCATGCATCG 59.833 50.000 21.98 9.90 0.00 3.84
1881 1915 1.129879 CGTGAACAAGCATGCATCGC 61.130 55.000 21.98 16.50 0.00 4.58
1882 1916 1.129879 GTGAACAAGCATGCATCGCG 61.130 55.000 21.98 0.00 0.00 5.87
1883 1917 1.297456 TGAACAAGCATGCATCGCGA 61.297 50.000 21.98 13.09 0.00 5.87
1884 1918 0.179192 GAACAAGCATGCATCGCGAA 60.179 50.000 21.98 0.00 0.00 4.70
1885 1919 0.454957 AACAAGCATGCATCGCGAAC 60.455 50.000 21.98 9.54 0.00 3.95
1886 1920 1.300971 ACAAGCATGCATCGCGAACT 61.301 50.000 21.98 0.00 0.00 3.01
1887 1921 0.179181 CAAGCATGCATCGCGAACTT 60.179 50.000 21.98 7.45 0.00 2.66
1888 1922 1.062440 CAAGCATGCATCGCGAACTTA 59.938 47.619 21.98 0.00 0.00 2.24
1889 1923 1.586422 AGCATGCATCGCGAACTTAT 58.414 45.000 21.98 2.50 0.00 1.73
1890 1924 1.942657 AGCATGCATCGCGAACTTATT 59.057 42.857 21.98 0.00 0.00 1.40
1891 1925 2.355756 AGCATGCATCGCGAACTTATTT 59.644 40.909 21.98 0.00 0.00 1.40
1892 1926 3.559655 AGCATGCATCGCGAACTTATTTA 59.440 39.130 21.98 0.00 0.00 1.40
1893 1927 3.902465 GCATGCATCGCGAACTTATTTAG 59.098 43.478 15.24 0.00 0.00 1.85
1894 1928 4.552767 GCATGCATCGCGAACTTATTTAGT 60.553 41.667 15.24 0.00 39.32 2.24
1895 1929 5.333035 GCATGCATCGCGAACTTATTTAGTA 60.333 40.000 15.24 0.00 35.54 1.82
1896 1930 5.630896 TGCATCGCGAACTTATTTAGTAC 57.369 39.130 15.24 0.00 35.54 2.73
1897 1931 4.205588 TGCATCGCGAACTTATTTAGTACG 59.794 41.667 15.24 0.00 35.54 3.67
1898 1932 4.205792 GCATCGCGAACTTATTTAGTACGT 59.794 41.667 15.24 0.00 35.54 3.57
1899 1933 5.396362 GCATCGCGAACTTATTTAGTACGTA 59.604 40.000 15.24 0.00 35.54 3.57
1900 1934 6.075415 GCATCGCGAACTTATTTAGTACGTAA 60.075 38.462 15.24 0.00 35.54 3.18
1901 1935 6.774717 TCGCGAACTTATTTAGTACGTAAC 57.225 37.500 6.20 0.00 35.54 2.50
1902 1936 6.542852 TCGCGAACTTATTTAGTACGTAACT 58.457 36.000 6.20 0.00 42.62 2.24
1903 1937 7.021196 TCGCGAACTTATTTAGTACGTAACTT 58.979 34.615 6.20 0.00 39.80 2.66
1904 1938 7.537306 TCGCGAACTTATTTAGTACGTAACTTT 59.463 33.333 6.20 0.00 39.80 2.66
1905 1939 8.155923 CGCGAACTTATTTAGTACGTAACTTTT 58.844 33.333 0.00 0.00 39.80 2.27
1913 1947 6.695292 TTAGTACGTAACTTTTACTGCTGC 57.305 37.500 0.00 0.00 39.80 5.25
1914 1948 3.671928 AGTACGTAACTTTTACTGCTGCG 59.328 43.478 0.00 0.00 33.35 5.18
1915 1949 1.796459 ACGTAACTTTTACTGCTGCGG 59.204 47.619 6.98 6.98 0.00 5.69
1916 1950 1.463528 CGTAACTTTTACTGCTGCGGC 60.464 52.381 11.65 11.65 39.26 6.53
1925 1959 4.146058 TGCTGCGGCATATTCCTG 57.854 55.556 18.37 0.00 44.28 3.86
1926 1960 1.224315 TGCTGCGGCATATTCCTGT 59.776 52.632 18.37 0.00 44.28 4.00
1927 1961 0.394216 TGCTGCGGCATATTCCTGTT 60.394 50.000 18.37 0.00 44.28 3.16
1928 1962 0.029834 GCTGCGGCATATTCCTGTTG 59.970 55.000 14.08 0.00 38.54 3.33
1929 1963 0.664761 CTGCGGCATATTCCTGTTGG 59.335 55.000 1.75 0.00 0.00 3.77
1930 1964 0.254462 TGCGGCATATTCCTGTTGGA 59.746 50.000 0.00 0.00 41.36 3.53
1931 1965 1.133823 TGCGGCATATTCCTGTTGGAT 60.134 47.619 0.00 0.00 42.81 3.41
1932 1966 1.267806 GCGGCATATTCCTGTTGGATG 59.732 52.381 0.00 0.00 42.81 3.51
1933 1967 2.575532 CGGCATATTCCTGTTGGATGT 58.424 47.619 0.00 0.00 42.81 3.06
1934 1968 2.951642 CGGCATATTCCTGTTGGATGTT 59.048 45.455 0.00 0.00 42.81 2.71
1935 1969 4.133820 CGGCATATTCCTGTTGGATGTTA 58.866 43.478 0.00 0.00 42.81 2.41
1936 1970 4.761739 CGGCATATTCCTGTTGGATGTTAT 59.238 41.667 0.00 0.00 42.81 1.89
1937 1971 5.241506 CGGCATATTCCTGTTGGATGTTATT 59.758 40.000 0.00 0.00 42.81 1.40
1938 1972 6.239008 CGGCATATTCCTGTTGGATGTTATTT 60.239 38.462 0.00 0.00 42.81 1.40
1939 1973 7.500141 GGCATATTCCTGTTGGATGTTATTTT 58.500 34.615 0.00 0.00 42.81 1.82
1940 1974 7.653311 GGCATATTCCTGTTGGATGTTATTTTC 59.347 37.037 0.00 0.00 42.81 2.29
1941 1975 8.416329 GCATATTCCTGTTGGATGTTATTTTCT 58.584 33.333 0.00 0.00 42.81 2.52
1942 1976 9.740239 CATATTCCTGTTGGATGTTATTTTCTG 57.260 33.333 0.00 0.00 42.81 3.02
1943 1977 7.781324 ATTCCTGTTGGATGTTATTTTCTGT 57.219 32.000 0.00 0.00 42.81 3.41
1944 1978 8.877864 ATTCCTGTTGGATGTTATTTTCTGTA 57.122 30.769 0.00 0.00 42.81 2.74
1945 1979 7.681939 TCCTGTTGGATGTTATTTTCTGTAC 57.318 36.000 0.00 0.00 37.46 2.90
1946 1980 7.227873 TCCTGTTGGATGTTATTTTCTGTACA 58.772 34.615 0.00 0.00 37.46 2.90
1947 1981 7.888021 TCCTGTTGGATGTTATTTTCTGTACAT 59.112 33.333 0.00 0.00 37.46 2.29
1948 1982 9.173021 CCTGTTGGATGTTATTTTCTGTACATA 57.827 33.333 0.00 0.00 31.76 2.29
1995 2029 9.883142 AATTTAAACACATTTCAGAAAACAGGA 57.117 25.926 0.00 0.00 0.00 3.86
1996 2030 9.883142 ATTTAAACACATTTCAGAAAACAGGAA 57.117 25.926 0.00 0.00 0.00 3.36
1997 2031 9.712305 TTTAAACACATTTCAGAAAACAGGAAA 57.288 25.926 0.00 0.00 35.27 3.13
1998 2032 9.712305 TTAAACACATTTCAGAAAACAGGAAAA 57.288 25.926 0.00 0.00 34.55 2.29
1999 2033 8.791327 AAACACATTTCAGAAAACAGGAAAAT 57.209 26.923 0.00 0.00 34.55 1.82
2000 2034 8.791327 AACACATTTCAGAAAACAGGAAAATT 57.209 26.923 0.00 0.00 34.55 1.82
2001 2035 8.791327 ACACATTTCAGAAAACAGGAAAATTT 57.209 26.923 0.00 0.00 34.55 1.82
2002 2036 8.667463 ACACATTTCAGAAAACAGGAAAATTTG 58.333 29.630 0.00 0.00 34.55 2.32
2003 2037 8.881743 CACATTTCAGAAAACAGGAAAATTTGA 58.118 29.630 0.00 0.00 34.55 2.69
2004 2038 9.447157 ACATTTCAGAAAACAGGAAAATTTGAA 57.553 25.926 0.00 0.00 34.55 2.69
2005 2039 9.925268 CATTTCAGAAAACAGGAAAATTTGAAG 57.075 29.630 0.00 0.00 34.55 3.02
2006 2040 9.889128 ATTTCAGAAAACAGGAAAATTTGAAGA 57.111 25.926 0.00 0.00 34.55 2.87
2007 2041 9.717942 TTTCAGAAAACAGGAAAATTTGAAGAA 57.282 25.926 0.00 0.00 0.00 2.52
2008 2042 9.717942 TTCAGAAAACAGGAAAATTTGAAGAAA 57.282 25.926 0.00 0.00 0.00 2.52
2009 2043 9.889128 TCAGAAAACAGGAAAATTTGAAGAAAT 57.111 25.926 0.00 0.00 32.87 2.17
2010 2044 9.925268 CAGAAAACAGGAAAATTTGAAGAAATG 57.075 29.630 0.00 0.00 31.83 2.32
2011 2045 9.671279 AGAAAACAGGAAAATTTGAAGAAATGT 57.329 25.926 0.00 0.00 31.83 2.71
2012 2046 9.706846 GAAAACAGGAAAATTTGAAGAAATGTG 57.293 29.630 0.00 0.00 31.83 3.21
2013 2047 9.447157 AAAACAGGAAAATTTGAAGAAATGTGA 57.553 25.926 0.00 0.00 31.83 3.58
2014 2048 9.447157 AAACAGGAAAATTTGAAGAAATGTGAA 57.553 25.926 0.00 0.00 31.83 3.18
2015 2049 8.424274 ACAGGAAAATTTGAAGAAATGTGAAC 57.576 30.769 0.00 0.00 31.83 3.18
2016 2050 8.040132 ACAGGAAAATTTGAAGAAATGTGAACA 58.960 29.630 0.00 0.00 31.83 3.18
2017 2051 8.881743 CAGGAAAATTTGAAGAAATGTGAACAA 58.118 29.630 0.00 0.00 31.83 2.83
2018 2052 9.447157 AGGAAAATTTGAAGAAATGTGAACAAA 57.553 25.926 0.00 0.00 31.83 2.83
2052 2086 9.883142 ATTCCAAAATAGTCTTTGAAAAACACA 57.117 25.926 0.00 0.00 38.35 3.72
2053 2087 9.712305 TTCCAAAATAGTCTTTGAAAAACACAA 57.288 25.926 0.00 0.00 38.35 3.33
2054 2088 9.712305 TCCAAAATAGTCTTTGAAAAACACAAA 57.288 25.926 0.00 0.00 38.35 2.83
2055 2089 9.753669 CCAAAATAGTCTTTGAAAAACACAAAC 57.246 29.630 0.00 0.00 38.35 2.93
2064 2098 9.455847 TCTTTGAAAAACACAAACAAAATTTGG 57.544 25.926 10.71 0.00 34.30 3.28
2065 2099 9.455847 CTTTGAAAAACACAAACAAAATTTGGA 57.544 25.926 10.71 0.00 34.30 3.53
2066 2100 9.801873 TTTGAAAAACACAAACAAAATTTGGAA 57.198 22.222 10.71 0.00 33.25 3.53
2067 2101 9.971922 TTGAAAAACACAAACAAAATTTGGAAT 57.028 22.222 10.71 0.00 33.92 3.01
2068 2102 9.971922 TGAAAAACACAAACAAAATTTGGAATT 57.028 22.222 10.71 0.00 33.92 2.17
2070 2104 7.809226 AAACACAAACAAAATTTGGAATTGC 57.191 28.000 10.71 0.00 33.92 3.56
2071 2105 6.506500 ACACAAACAAAATTTGGAATTGCA 57.493 29.167 10.71 0.00 33.92 4.08
2072 2106 6.917533 ACACAAACAAAATTTGGAATTGCAA 58.082 28.000 8.47 8.47 33.92 4.08
2073 2107 7.373493 ACACAAACAAAATTTGGAATTGCAAA 58.627 26.923 24.68 24.68 33.92 3.68
2074 2108 7.328005 ACACAAACAAAATTTGGAATTGCAAAC 59.672 29.630 24.92 0.26 33.92 2.93
2075 2109 7.327761 CACAAACAAAATTTGGAATTGCAAACA 59.672 29.630 24.92 6.89 33.92 2.83
2076 2110 7.541437 ACAAACAAAATTTGGAATTGCAAACAG 59.459 29.630 24.92 16.91 33.92 3.16
2077 2111 6.998968 ACAAAATTTGGAATTGCAAACAGA 57.001 29.167 24.92 5.79 34.12 3.41
2078 2112 7.571080 ACAAAATTTGGAATTGCAAACAGAT 57.429 28.000 24.92 8.65 34.12 2.90
2079 2113 7.998580 ACAAAATTTGGAATTGCAAACAGATT 58.001 26.923 24.92 13.80 34.12 2.40
2080 2114 8.468399 ACAAAATTTGGAATTGCAAACAGATTT 58.532 25.926 24.92 18.18 31.53 2.17
2081 2115 9.303537 CAAAATTTGGAATTGCAAACAGATTTT 57.696 25.926 24.92 21.96 37.81 1.82
2082 2116 8.859517 AAATTTGGAATTGCAAACAGATTTTG 57.140 26.923 24.92 0.00 27.35 2.44
2083 2117 7.804843 ATTTGGAATTGCAAACAGATTTTGA 57.195 28.000 24.92 1.80 0.00 2.69
2084 2118 7.621428 TTTGGAATTGCAAACAGATTTTGAA 57.379 28.000 19.76 0.00 0.00 2.69
2085 2119 7.621428 TTGGAATTGCAAACAGATTTTGAAA 57.379 28.000 10.24 0.00 32.03 2.69
2086 2120 7.621428 TGGAATTGCAAACAGATTTTGAAAA 57.379 28.000 1.71 0.00 31.33 2.29
2087 2121 8.048534 TGGAATTGCAAACAGATTTTGAAAAA 57.951 26.923 1.71 0.00 31.33 1.94
2114 2148 8.742554 ATGTGGACATTTTCGAAAATAAGAAC 57.257 30.769 30.14 24.49 36.52 3.01
2115 2149 7.708051 TGTGGACATTTTCGAAAATAAGAACA 58.292 30.769 30.14 26.17 36.52 3.18
2116 2150 8.191446 TGTGGACATTTTCGAAAATAAGAACAA 58.809 29.630 30.14 14.21 36.52 2.83
2117 2151 9.026074 GTGGACATTTTCGAAAATAAGAACAAA 57.974 29.630 30.14 11.96 36.52 2.83
2118 2152 9.587772 TGGACATTTTCGAAAATAAGAACAAAA 57.412 25.926 30.14 10.75 36.52 2.44
2128 2162 9.862585 CGAAAATAAGAACAAAATTTTTGAGGG 57.137 29.630 24.73 2.65 36.63 4.30
2134 2168 8.862325 AAGAACAAAATTTTTGAGGGAGTTTT 57.138 26.923 24.73 8.81 0.00 2.43
2135 2169 8.862325 AGAACAAAATTTTTGAGGGAGTTTTT 57.138 26.923 24.73 8.19 0.00 1.94
2230 2264 9.710979 TTAGAAACACTGAACGTATTTCAAAAG 57.289 29.630 0.00 0.00 43.90 2.27
2231 2265 7.981142 AGAAACACTGAACGTATTTCAAAAGA 58.019 30.769 0.00 0.00 43.90 2.52
2232 2266 8.455682 AGAAACACTGAACGTATTTCAAAAGAA 58.544 29.630 0.00 0.00 43.90 2.52
2233 2267 9.233232 GAAACACTGAACGTATTTCAAAAGAAT 57.767 29.630 0.00 0.00 43.90 2.40
2234 2268 8.560576 AACACTGAACGTATTTCAAAAGAATG 57.439 30.769 0.00 0.00 43.90 2.67
2235 2269 7.925993 ACACTGAACGTATTTCAAAAGAATGA 58.074 30.769 0.00 0.00 43.90 2.57
2236 2270 8.402472 ACACTGAACGTATTTCAAAAGAATGAA 58.598 29.630 0.00 0.00 43.90 2.57
2237 2271 8.895845 CACTGAACGTATTTCAAAAGAATGAAG 58.104 33.333 0.00 0.00 43.90 3.02
2238 2272 8.836413 ACTGAACGTATTTCAAAAGAATGAAGA 58.164 29.630 0.00 0.00 43.90 2.87
2239 2273 9.663904 CTGAACGTATTTCAAAAGAATGAAGAA 57.336 29.630 0.00 0.00 43.90 2.52
2253 2287 9.889128 AAAGAATGAAGAAAATTTGAAGTTCCA 57.111 25.926 0.00 0.00 0.00 3.53
2254 2288 9.889128 AAGAATGAAGAAAATTTGAAGTTCCAA 57.111 25.926 0.00 0.00 0.00 3.53
2255 2289 9.317936 AGAATGAAGAAAATTTGAAGTTCCAAC 57.682 29.630 0.00 0.00 0.00 3.77
2256 2290 9.097257 GAATGAAGAAAATTTGAAGTTCCAACA 57.903 29.630 0.00 0.00 0.00 3.33
2257 2291 9.617523 AATGAAGAAAATTTGAAGTTCCAACAT 57.382 25.926 0.00 0.00 0.00 2.71
2258 2292 8.647143 TGAAGAAAATTTGAAGTTCCAACATC 57.353 30.769 0.00 0.00 0.00 3.06
2259 2293 8.477256 TGAAGAAAATTTGAAGTTCCAACATCT 58.523 29.630 0.00 0.00 0.00 2.90
2260 2294 9.317936 GAAGAAAATTTGAAGTTCCAACATCTT 57.682 29.630 0.00 6.75 0.00 2.40
2261 2295 9.671279 AAGAAAATTTGAAGTTCCAACATCTTT 57.329 25.926 0.00 0.00 0.00 2.52
2265 2299 9.750125 AAATTTGAAGTTCCAACATCTTTAGTC 57.250 29.630 0.00 0.00 0.00 2.59
2266 2300 7.873719 TTTGAAGTTCCAACATCTTTAGTCA 57.126 32.000 0.00 0.00 0.00 3.41
2267 2301 7.873719 TTGAAGTTCCAACATCTTTAGTCAA 57.126 32.000 0.00 0.00 0.00 3.18
2268 2302 7.873719 TGAAGTTCCAACATCTTTAGTCAAA 57.126 32.000 0.00 0.00 0.00 2.69
2269 2303 8.287439 TGAAGTTCCAACATCTTTAGTCAAAA 57.713 30.769 0.00 0.00 0.00 2.44
2270 2304 8.744652 TGAAGTTCCAACATCTTTAGTCAAAAA 58.255 29.630 0.00 0.00 0.00 1.94
2271 2305 9.750125 GAAGTTCCAACATCTTTAGTCAAAAAT 57.250 29.630 0.00 0.00 0.00 1.82
2272 2306 9.533253 AAGTTCCAACATCTTTAGTCAAAAATG 57.467 29.630 0.00 0.00 0.00 2.32
2273 2307 8.143835 AGTTCCAACATCTTTAGTCAAAAATGG 58.856 33.333 0.00 0.00 0.00 3.16
2274 2308 7.831691 TCCAACATCTTTAGTCAAAAATGGA 57.168 32.000 0.00 0.00 0.00 3.41
2275 2309 8.243961 TCCAACATCTTTAGTCAAAAATGGAA 57.756 30.769 0.00 0.00 0.00 3.53
2276 2310 8.869109 TCCAACATCTTTAGTCAAAAATGGAAT 58.131 29.630 0.00 0.00 0.00 3.01
2277 2311 8.928733 CCAACATCTTTAGTCAAAAATGGAATG 58.071 33.333 0.00 0.00 0.00 2.67
2278 2312 9.480053 CAACATCTTTAGTCAAAAATGGAATGT 57.520 29.630 0.00 0.00 0.00 2.71
2280 2314 9.696917 ACATCTTTAGTCAAAAATGGAATGTTC 57.303 29.630 0.00 0.00 0.00 3.18
2281 2315 9.918630 CATCTTTAGTCAAAAATGGAATGTTCT 57.081 29.630 0.00 0.00 0.00 3.01
2284 2318 9.329913 CTTTAGTCAAAAATGGAATGTTCTACG 57.670 33.333 0.00 0.00 0.00 3.51
2285 2319 8.610248 TTAGTCAAAAATGGAATGTTCTACGA 57.390 30.769 0.00 0.00 0.00 3.43
2286 2320 7.504924 AGTCAAAAATGGAATGTTCTACGAA 57.495 32.000 0.00 0.00 0.00 3.85
2287 2321 7.936584 AGTCAAAAATGGAATGTTCTACGAAA 58.063 30.769 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 9.814899 CAACCTTGGATGTTTTATATGCAATTA 57.185 29.630 0.00 0.00 35.72 1.40
16 17 8.538701 TCAACCTTGGATGTTTTATATGCAATT 58.461 29.630 0.00 0.00 35.72 2.32
17 18 8.076910 TCAACCTTGGATGTTTTATATGCAAT 57.923 30.769 0.00 0.00 35.72 3.56
18 19 7.473735 TCAACCTTGGATGTTTTATATGCAA 57.526 32.000 0.00 0.00 35.14 4.08
19 20 7.658525 ATCAACCTTGGATGTTTTATATGCA 57.341 32.000 0.00 0.00 0.00 3.96
64 65 9.027129 CGTCTCCAACGTATCTATAATTTTTGA 57.973 33.333 0.00 0.00 46.42 2.69
81 82 1.202268 CGAGGGTGATACGTCTCCAAC 60.202 57.143 0.00 0.00 39.30 3.77
82 83 1.100510 CGAGGGTGATACGTCTCCAA 58.899 55.000 0.00 0.00 39.30 3.53
83 84 0.253894 TCGAGGGTGATACGTCTCCA 59.746 55.000 0.00 0.00 39.30 3.86
84 85 1.267261 CATCGAGGGTGATACGTCTCC 59.733 57.143 0.00 0.00 37.30 3.71
85 86 1.267261 CCATCGAGGGTGATACGTCTC 59.733 57.143 8.25 0.00 0.00 3.36
86 87 1.319541 CCATCGAGGGTGATACGTCT 58.680 55.000 8.25 0.00 0.00 4.18
87 88 0.318784 GCCATCGAGGGTGATACGTC 60.319 60.000 18.73 0.00 38.09 4.34
88 89 1.040893 TGCCATCGAGGGTGATACGT 61.041 55.000 18.73 0.00 38.09 3.57
89 90 0.318441 ATGCCATCGAGGGTGATACG 59.682 55.000 18.73 0.00 38.09 3.06
90 91 1.070758 ACATGCCATCGAGGGTGATAC 59.929 52.381 18.73 0.41 38.09 2.24
91 92 1.070601 CACATGCCATCGAGGGTGATA 59.929 52.381 18.73 2.50 38.09 2.15
92 93 0.179037 CACATGCCATCGAGGGTGAT 60.179 55.000 18.73 7.45 38.09 3.06
93 94 1.221566 CACATGCCATCGAGGGTGA 59.778 57.895 18.73 5.14 38.09 4.02
94 95 2.475466 GCACATGCCATCGAGGGTG 61.475 63.158 18.73 11.54 38.09 4.61
95 96 2.124570 GCACATGCCATCGAGGGT 60.125 61.111 18.73 0.00 38.09 4.34
102 103 2.677524 AAGCGGTGCACATGCCAT 60.678 55.556 24.42 14.24 41.18 4.40
171 172 2.264124 GCAGTGTACTGGGAGACGA 58.736 57.895 13.41 0.00 43.94 4.20
223 224 3.307762 GGAGGAAGAAGTGGTGCAAGTAT 60.308 47.826 0.00 0.00 0.00 2.12
255 256 1.668101 GAATCAGGCCGTCTCCGACT 61.668 60.000 0.00 0.00 35.63 4.18
331 332 4.800914 GCCACTAAAGAAGAGCTGAAGACA 60.801 45.833 0.00 0.00 0.00 3.41
370 371 3.492313 GGACATGCAGAACGAATCAAAC 58.508 45.455 0.00 0.00 0.00 2.93
432 433 0.107643 TGATGACCGCACCAAGTTCA 59.892 50.000 0.00 0.00 0.00 3.18
449 450 4.671590 TCTCGGGTGGTCGGCTGA 62.672 66.667 0.00 0.00 0.00 4.26
494 495 2.203422 CAACGCCAACCCCTTCCA 60.203 61.111 0.00 0.00 0.00 3.53
549 551 4.952957 CCCTCTCTTCTCTCACTATCAACA 59.047 45.833 0.00 0.00 0.00 3.33
555 557 2.024846 CACCCCCTCTCTTCTCTCACTA 60.025 54.545 0.00 0.00 0.00 2.74
597 602 7.723382 TCTCCATCCCTCCTATATTTACTCAT 58.277 38.462 0.00 0.00 0.00 2.90
612 617 1.220236 CTTCTCCTCCTCTCCATCCCT 59.780 57.143 0.00 0.00 0.00 4.20
641 652 6.062095 AGAGCATGTAGTTAAAACAACCTGT 58.938 36.000 0.00 0.00 0.00 4.00
644 655 6.966021 TGAAGAGCATGTAGTTAAAACAACC 58.034 36.000 0.00 0.00 0.00 3.77
701 712 1.672881 GTCAAGCACAGCACAGAGTTT 59.327 47.619 0.00 0.00 0.00 2.66
1162 1176 2.688507 CTTGAACGTCACCATGTAGCT 58.311 47.619 0.00 0.00 0.00 3.32
1212 1226 5.674525 TCAATGCTATCCTTGTCGAAGATT 58.325 37.500 0.00 0.00 40.67 2.40
1228 1242 2.146342 CTTGTTGACGACCTCAATGCT 58.854 47.619 0.00 0.00 41.10 3.79
1309 1324 7.816640 TGTTCAAAGCAGACTTGATAAATACC 58.183 34.615 0.00 0.00 35.85 2.73
1313 1328 7.275888 ACATGTTCAAAGCAGACTTGATAAA 57.724 32.000 0.00 0.00 35.85 1.40
1314 1329 6.882610 ACATGTTCAAAGCAGACTTGATAA 57.117 33.333 0.00 0.00 35.85 1.75
1319 1334 7.275888 TCATAAACATGTTCAAAGCAGACTT 57.724 32.000 12.39 0.00 37.90 3.01
1385 1400 8.737168 ACAGAGCATGAACTAGCATAATTAAA 57.263 30.769 0.00 0.00 0.00 1.52
1387 1402 8.737168 AAACAGAGCATGAACTAGCATAATTA 57.263 30.769 0.00 0.00 0.00 1.40
1417 1450 2.424601 CACACATCATAAGCCCAACAGG 59.575 50.000 0.00 0.00 39.47 4.00
1424 1457 0.657840 GGCGACACACATCATAAGCC 59.342 55.000 0.00 0.00 36.32 4.35
1439 1472 0.604073 TTACCATCACACTTCGGCGA 59.396 50.000 4.99 4.99 0.00 5.54
1440 1473 0.719465 GTTACCATCACACTTCGGCG 59.281 55.000 0.00 0.00 0.00 6.46
1496 1530 5.508153 GCATGGTGTTTGGTTGTATGTAACA 60.508 40.000 0.00 0.00 35.88 2.41
1500 1534 3.230134 AGCATGGTGTTTGGTTGTATGT 58.770 40.909 0.00 0.00 0.00 2.29
1540 1574 3.679361 GCCTGATATTTGGTTGCATGCAA 60.679 43.478 28.80 28.80 0.00 4.08
1545 1579 2.492881 CACTGCCTGATATTTGGTTGCA 59.507 45.455 0.00 0.00 0.00 4.08
1601 1635 3.894427 ACCATCTGCATGTTGTTTGGTTA 59.106 39.130 0.00 0.00 32.23 2.85
1647 1681 3.046374 ACACTTCTTCACCCAACCTAGT 58.954 45.455 0.00 0.00 0.00 2.57
1649 1683 4.564821 GCATACACTTCTTCACCCAACCTA 60.565 45.833 0.00 0.00 0.00 3.08
1679 1713 0.390603 TTGCCGTGCGCTACATTACT 60.391 50.000 9.73 0.00 38.78 2.24
1683 1717 3.124921 GGTTGCCGTGCGCTACAT 61.125 61.111 9.73 0.00 44.01 2.29
1717 1751 2.248431 GTGAACAACTCGCGGTGC 59.752 61.111 6.13 0.00 0.00 5.01
1718 1752 1.564622 CTGTGAACAACTCGCGGTG 59.435 57.895 6.13 4.92 37.37 4.94
1719 1753 2.244651 GCTGTGAACAACTCGCGGT 61.245 57.895 6.13 0.00 42.15 5.68
1720 1754 2.162921 CTGCTGTGAACAACTCGCGG 62.163 60.000 6.13 0.00 42.90 6.46
1721 1755 1.202568 CTGCTGTGAACAACTCGCG 59.797 57.895 0.00 0.00 37.37 5.87
1722 1756 1.497991 TACTGCTGTGAACAACTCGC 58.502 50.000 6.48 0.00 34.93 5.03
1723 1757 4.530094 TTTTACTGCTGTGAACAACTCG 57.470 40.909 6.48 0.00 0.00 4.18
1724 1758 6.972328 TCAATTTTTACTGCTGTGAACAACTC 59.028 34.615 6.48 0.00 0.00 3.01
1725 1759 6.862209 TCAATTTTTACTGCTGTGAACAACT 58.138 32.000 6.48 0.00 0.00 3.16
1726 1760 7.518731 TTCAATTTTTACTGCTGTGAACAAC 57.481 32.000 6.48 0.00 0.00 3.32
1727 1761 8.715191 ATTTCAATTTTTACTGCTGTGAACAA 57.285 26.923 6.48 3.12 0.00 2.83
1728 1762 8.602328 CAATTTCAATTTTTACTGCTGTGAACA 58.398 29.630 6.48 0.00 0.00 3.18
1729 1763 8.603181 ACAATTTCAATTTTTACTGCTGTGAAC 58.397 29.630 6.48 0.00 0.00 3.18
1730 1764 8.715191 ACAATTTCAATTTTTACTGCTGTGAA 57.285 26.923 6.48 1.26 0.00 3.18
1731 1765 8.196771 AGACAATTTCAATTTTTACTGCTGTGA 58.803 29.630 6.48 0.00 0.00 3.58
1732 1766 8.356533 AGACAATTTCAATTTTTACTGCTGTG 57.643 30.769 6.48 0.00 0.00 3.66
1775 1809 4.766404 ATCGGCGTCTCTTTTGATTTTT 57.234 36.364 6.85 0.00 0.00 1.94
1776 1810 4.332819 CCTATCGGCGTCTCTTTTGATTTT 59.667 41.667 6.85 0.00 0.00 1.82
1777 1811 3.871594 CCTATCGGCGTCTCTTTTGATTT 59.128 43.478 6.85 0.00 0.00 2.17
1778 1812 3.132289 TCCTATCGGCGTCTCTTTTGATT 59.868 43.478 6.85 0.00 0.00 2.57
1779 1813 2.693591 TCCTATCGGCGTCTCTTTTGAT 59.306 45.455 6.85 0.00 0.00 2.57
1780 1814 2.097036 TCCTATCGGCGTCTCTTTTGA 58.903 47.619 6.85 0.00 0.00 2.69
1781 1815 2.579207 TCCTATCGGCGTCTCTTTTG 57.421 50.000 6.85 0.00 0.00 2.44
1782 1816 3.718815 GATTCCTATCGGCGTCTCTTTT 58.281 45.455 6.85 0.00 0.00 2.27
1783 1817 3.372660 GATTCCTATCGGCGTCTCTTT 57.627 47.619 6.85 0.00 0.00 2.52
1794 1828 5.070770 ACATCTCATGCTCGATTCCTATC 57.929 43.478 0.00 0.00 0.00 2.08
1795 1829 4.380339 CGACATCTCATGCTCGATTCCTAT 60.380 45.833 0.00 0.00 36.56 2.57
1796 1830 3.057946 CGACATCTCATGCTCGATTCCTA 60.058 47.826 0.00 0.00 36.56 2.94
1797 1831 2.288091 CGACATCTCATGCTCGATTCCT 60.288 50.000 0.00 0.00 36.56 3.36
1798 1832 2.057316 CGACATCTCATGCTCGATTCC 58.943 52.381 0.00 0.00 36.56 3.01
1799 1833 1.455030 GCGACATCTCATGCTCGATTC 59.545 52.381 10.61 0.00 36.56 2.52
1800 1834 1.068281 AGCGACATCTCATGCTCGATT 59.932 47.619 10.61 0.00 36.56 3.34
1801 1835 0.672889 AGCGACATCTCATGCTCGAT 59.327 50.000 10.61 4.11 36.56 3.59
1802 1836 0.029967 GAGCGACATCTCATGCTCGA 59.970 55.000 10.61 0.00 43.67 4.04
1803 1837 2.504351 GAGCGACATCTCATGCTCG 58.496 57.895 0.00 0.00 43.67 5.03
1805 1839 0.530211 GCAGAGCGACATCTCATGCT 60.530 55.000 0.00 0.00 41.11 3.79
1806 1840 0.530211 AGCAGAGCGACATCTCATGC 60.530 55.000 0.00 0.00 37.43 4.06
1807 1841 1.489574 GAGCAGAGCGACATCTCATG 58.510 55.000 0.00 0.00 35.59 3.07
1808 1842 0.388659 GGAGCAGAGCGACATCTCAT 59.611 55.000 0.00 0.00 35.59 2.90
1809 1843 0.967380 TGGAGCAGAGCGACATCTCA 60.967 55.000 0.00 0.00 35.59 3.27
1810 1844 0.527385 GTGGAGCAGAGCGACATCTC 60.527 60.000 0.00 0.00 0.00 2.75
1811 1845 1.253593 TGTGGAGCAGAGCGACATCT 61.254 55.000 0.00 0.00 0.00 2.90
1812 1846 1.216444 TGTGGAGCAGAGCGACATC 59.784 57.895 0.00 0.00 0.00 3.06
1813 1847 3.380995 TGTGGAGCAGAGCGACAT 58.619 55.556 0.00 0.00 0.00 3.06
1821 1855 2.510238 GGTAGCGCTGTGGAGCAG 60.510 66.667 22.90 0.00 46.62 4.24
1822 1856 3.300934 CTGGTAGCGCTGTGGAGCA 62.301 63.158 22.90 15.03 46.62 4.26
1823 1857 2.510238 CTGGTAGCGCTGTGGAGC 60.510 66.667 22.90 10.48 42.37 4.70
1824 1858 2.510238 GCTGGTAGCGCTGTGGAG 60.510 66.667 22.90 11.49 0.00 3.86
1825 1859 4.082523 GGCTGGTAGCGCTGTGGA 62.083 66.667 22.90 0.00 43.62 4.02
1832 1866 3.905678 CTCGAGGGGCTGGTAGCG 61.906 72.222 3.91 0.00 43.62 4.26
1833 1867 1.041447 TTACTCGAGGGGCTGGTAGC 61.041 60.000 18.41 0.00 41.46 3.58
1834 1868 1.481871 TTTACTCGAGGGGCTGGTAG 58.518 55.000 18.41 0.00 0.00 3.18
1835 1869 1.760613 CATTTACTCGAGGGGCTGGTA 59.239 52.381 18.41 0.00 0.00 3.25
1836 1870 0.541863 CATTTACTCGAGGGGCTGGT 59.458 55.000 18.41 0.00 0.00 4.00
1837 1871 0.179045 CCATTTACTCGAGGGGCTGG 60.179 60.000 18.41 13.80 0.00 4.85
1838 1872 0.815615 GCCATTTACTCGAGGGGCTG 60.816 60.000 18.41 8.68 38.37 4.85
1839 1873 1.527370 GCCATTTACTCGAGGGGCT 59.473 57.895 18.41 0.00 38.37 5.19
1840 1874 1.526225 GGCCATTTACTCGAGGGGC 60.526 63.158 18.41 19.08 40.63 5.80
1841 1875 0.179045 CTGGCCATTTACTCGAGGGG 60.179 60.000 18.41 10.74 0.00 4.79
1842 1876 0.830648 TCTGGCCATTTACTCGAGGG 59.169 55.000 18.41 8.87 0.00 4.30
1843 1877 1.802880 CGTCTGGCCATTTACTCGAGG 60.803 57.143 18.41 0.00 0.00 4.63
1844 1878 1.135083 ACGTCTGGCCATTTACTCGAG 60.135 52.381 5.51 11.84 0.00 4.04
1845 1879 0.892755 ACGTCTGGCCATTTACTCGA 59.107 50.000 5.51 0.00 0.00 4.04
1846 1880 0.999406 CACGTCTGGCCATTTACTCG 59.001 55.000 5.51 7.80 0.00 4.18
1847 1881 2.380084 TCACGTCTGGCCATTTACTC 57.620 50.000 5.51 0.00 0.00 2.59
1848 1882 2.224426 TGTTCACGTCTGGCCATTTACT 60.224 45.455 5.51 0.00 0.00 2.24
1849 1883 2.147958 TGTTCACGTCTGGCCATTTAC 58.852 47.619 5.51 4.22 0.00 2.01
1850 1884 2.552599 TGTTCACGTCTGGCCATTTA 57.447 45.000 5.51 0.00 0.00 1.40
1851 1885 1.608590 CTTGTTCACGTCTGGCCATTT 59.391 47.619 5.51 0.00 0.00 2.32
1852 1886 1.238439 CTTGTTCACGTCTGGCCATT 58.762 50.000 5.51 0.00 0.00 3.16
1853 1887 1.237285 GCTTGTTCACGTCTGGCCAT 61.237 55.000 5.51 0.00 0.00 4.40
1854 1888 1.891919 GCTTGTTCACGTCTGGCCA 60.892 57.895 4.71 4.71 0.00 5.36
1855 1889 1.237285 ATGCTTGTTCACGTCTGGCC 61.237 55.000 0.00 0.00 0.00 5.36
1856 1890 0.110056 CATGCTTGTTCACGTCTGGC 60.110 55.000 0.00 0.00 0.00 4.85
1857 1891 0.110056 GCATGCTTGTTCACGTCTGG 60.110 55.000 11.37 0.00 0.00 3.86
1858 1892 0.587768 TGCATGCTTGTTCACGTCTG 59.412 50.000 20.33 0.00 0.00 3.51
1859 1893 1.466167 GATGCATGCTTGTTCACGTCT 59.534 47.619 20.33 0.00 0.00 4.18
1860 1894 1.787989 CGATGCATGCTTGTTCACGTC 60.788 52.381 20.33 0.00 0.00 4.34
1861 1895 0.166597 CGATGCATGCTTGTTCACGT 59.833 50.000 20.33 0.00 0.00 4.49
1862 1896 1.129879 GCGATGCATGCTTGTTCACG 61.130 55.000 20.33 12.59 0.00 4.35
1863 1897 1.129879 CGCGATGCATGCTTGTTCAC 61.130 55.000 20.33 4.14 0.00 3.18
1864 1898 1.135108 CGCGATGCATGCTTGTTCA 59.865 52.632 20.33 0.00 0.00 3.18
1865 1899 0.179192 TTCGCGATGCATGCTTGTTC 60.179 50.000 20.33 9.51 0.00 3.18
1866 1900 0.454957 GTTCGCGATGCATGCTTGTT 60.455 50.000 20.33 0.66 0.00 2.83
1867 1901 1.135315 GTTCGCGATGCATGCTTGT 59.865 52.632 20.33 4.79 0.00 3.16
1868 1902 0.179181 AAGTTCGCGATGCATGCTTG 60.179 50.000 20.33 9.55 0.00 4.01
1869 1903 1.368641 TAAGTTCGCGATGCATGCTT 58.631 45.000 20.33 13.23 0.00 3.91
1870 1904 1.586422 ATAAGTTCGCGATGCATGCT 58.414 45.000 20.33 4.11 0.00 3.79
1871 1905 2.389713 AATAAGTTCGCGATGCATGC 57.610 45.000 10.88 11.82 0.00 4.06
1872 1906 5.083136 ACTAAATAAGTTCGCGATGCATG 57.917 39.130 10.88 0.00 33.35 4.06
1873 1907 5.107989 CGTACTAAATAAGTTCGCGATGCAT 60.108 40.000 10.88 0.00 41.21 3.96
1874 1908 4.205588 CGTACTAAATAAGTTCGCGATGCA 59.794 41.667 10.88 0.00 41.21 3.96
1875 1909 4.674950 CGTACTAAATAAGTTCGCGATGC 58.325 43.478 10.88 6.34 41.21 3.91
1887 1921 8.863049 GCAGCAGTAAAAGTTACGTACTAAATA 58.137 33.333 0.00 0.00 35.54 1.40
1888 1922 7.411157 CGCAGCAGTAAAAGTTACGTACTAAAT 60.411 37.037 0.00 0.00 35.54 1.40
1889 1923 6.129115 CGCAGCAGTAAAAGTTACGTACTAAA 60.129 38.462 0.00 0.00 35.54 1.85
1890 1924 5.343058 CGCAGCAGTAAAAGTTACGTACTAA 59.657 40.000 0.00 0.00 35.54 2.24
1891 1925 4.853196 CGCAGCAGTAAAAGTTACGTACTA 59.147 41.667 0.00 0.00 35.54 1.82
1892 1926 3.671928 CGCAGCAGTAAAAGTTACGTACT 59.328 43.478 0.00 0.00 39.32 2.73
1893 1927 3.181537 CCGCAGCAGTAAAAGTTACGTAC 60.182 47.826 0.00 0.00 0.00 3.67
1894 1928 2.988493 CCGCAGCAGTAAAAGTTACGTA 59.012 45.455 0.00 0.00 0.00 3.57
1895 1929 1.796459 CCGCAGCAGTAAAAGTTACGT 59.204 47.619 0.00 0.00 0.00 3.57
1896 1930 1.463528 GCCGCAGCAGTAAAAGTTACG 60.464 52.381 0.00 0.00 39.53 3.18
1897 1931 1.533731 TGCCGCAGCAGTAAAAGTTAC 59.466 47.619 0.00 0.00 46.52 2.50
1898 1932 1.885560 TGCCGCAGCAGTAAAAGTTA 58.114 45.000 0.00 0.00 46.52 2.24
1899 1933 2.714259 TGCCGCAGCAGTAAAAGTT 58.286 47.368 0.00 0.00 46.52 2.66
1900 1934 4.473643 TGCCGCAGCAGTAAAAGT 57.526 50.000 0.00 0.00 46.52 2.66
1909 1943 0.029834 CAACAGGAATATGCCGCAGC 59.970 55.000 0.00 0.00 40.48 5.25
1910 1944 0.664761 CCAACAGGAATATGCCGCAG 59.335 55.000 0.00 0.00 0.00 5.18
1911 1945 0.254462 TCCAACAGGAATATGCCGCA 59.746 50.000 0.00 0.00 0.00 5.69
1912 1946 1.267806 CATCCAACAGGAATATGCCGC 59.732 52.381 0.00 0.00 34.49 6.53
1913 1947 2.575532 ACATCCAACAGGAATATGCCG 58.424 47.619 0.00 0.00 34.49 5.69
1914 1948 6.655078 AATAACATCCAACAGGAATATGCC 57.345 37.500 0.00 0.00 34.49 4.40
1915 1949 8.416329 AGAAAATAACATCCAACAGGAATATGC 58.584 33.333 0.00 0.00 34.49 3.14
1916 1950 9.740239 CAGAAAATAACATCCAACAGGAATATG 57.260 33.333 0.00 0.00 34.49 1.78
1917 1951 9.479549 ACAGAAAATAACATCCAACAGGAATAT 57.520 29.630 0.00 0.00 34.49 1.28
1918 1952 8.877864 ACAGAAAATAACATCCAACAGGAATA 57.122 30.769 0.00 0.00 34.49 1.75
1919 1953 7.781324 ACAGAAAATAACATCCAACAGGAAT 57.219 32.000 0.00 0.00 34.49 3.01
1920 1954 7.721842 TGTACAGAAAATAACATCCAACAGGAA 59.278 33.333 0.00 0.00 34.49 3.36
1921 1955 7.227873 TGTACAGAAAATAACATCCAACAGGA 58.772 34.615 0.00 0.00 35.50 3.86
1922 1956 7.447374 TGTACAGAAAATAACATCCAACAGG 57.553 36.000 0.00 0.00 0.00 4.00
1969 2003 9.883142 TCCTGTTTTCTGAAATGTGTTTAAATT 57.117 25.926 3.31 0.00 0.00 1.82
1970 2004 9.883142 TTCCTGTTTTCTGAAATGTGTTTAAAT 57.117 25.926 3.31 0.00 0.00 1.40
1971 2005 9.712305 TTTCCTGTTTTCTGAAATGTGTTTAAA 57.288 25.926 3.31 0.00 0.00 1.52
1972 2006 9.712305 TTTTCCTGTTTTCTGAAATGTGTTTAA 57.288 25.926 3.31 0.00 0.00 1.52
1973 2007 9.883142 ATTTTCCTGTTTTCTGAAATGTGTTTA 57.117 25.926 3.31 0.00 0.00 2.01
1974 2008 8.791327 ATTTTCCTGTTTTCTGAAATGTGTTT 57.209 26.923 3.31 0.00 0.00 2.83
1975 2009 8.791327 AATTTTCCTGTTTTCTGAAATGTGTT 57.209 26.923 3.31 0.00 0.00 3.32
1976 2010 8.667463 CAAATTTTCCTGTTTTCTGAAATGTGT 58.333 29.630 3.31 0.00 0.00 3.72
1977 2011 8.881743 TCAAATTTTCCTGTTTTCTGAAATGTG 58.118 29.630 3.31 0.00 0.00 3.21
1978 2012 9.447157 TTCAAATTTTCCTGTTTTCTGAAATGT 57.553 25.926 3.31 0.00 0.00 2.71
1979 2013 9.925268 CTTCAAATTTTCCTGTTTTCTGAAATG 57.075 29.630 3.31 0.00 0.00 2.32
1980 2014 9.889128 TCTTCAAATTTTCCTGTTTTCTGAAAT 57.111 25.926 3.31 0.00 0.00 2.17
1981 2015 9.717942 TTCTTCAAATTTTCCTGTTTTCTGAAA 57.282 25.926 0.00 0.00 0.00 2.69
1982 2016 9.717942 TTTCTTCAAATTTTCCTGTTTTCTGAA 57.282 25.926 0.00 0.00 0.00 3.02
1983 2017 9.889128 ATTTCTTCAAATTTTCCTGTTTTCTGA 57.111 25.926 0.00 0.00 0.00 3.27
1984 2018 9.925268 CATTTCTTCAAATTTTCCTGTTTTCTG 57.075 29.630 0.00 0.00 28.97 3.02
1985 2019 9.671279 ACATTTCTTCAAATTTTCCTGTTTTCT 57.329 25.926 0.00 0.00 28.97 2.52
1986 2020 9.706846 CACATTTCTTCAAATTTTCCTGTTTTC 57.293 29.630 0.00 0.00 28.97 2.29
1987 2021 9.447157 TCACATTTCTTCAAATTTTCCTGTTTT 57.553 25.926 0.00 0.00 28.97 2.43
1988 2022 9.447157 TTCACATTTCTTCAAATTTTCCTGTTT 57.553 25.926 0.00 0.00 28.97 2.83
1989 2023 8.882736 GTTCACATTTCTTCAAATTTTCCTGTT 58.117 29.630 0.00 0.00 28.97 3.16
1990 2024 8.040132 TGTTCACATTTCTTCAAATTTTCCTGT 58.960 29.630 0.00 0.00 28.97 4.00
1991 2025 8.422973 TGTTCACATTTCTTCAAATTTTCCTG 57.577 30.769 0.00 0.00 28.97 3.86
1992 2026 9.447157 TTTGTTCACATTTCTTCAAATTTTCCT 57.553 25.926 0.00 0.00 28.97 3.36
2026 2060 9.883142 TGTGTTTTTCAAAGACTATTTTGGAAT 57.117 25.926 0.00 0.00 35.91 3.01
2027 2061 9.712305 TTGTGTTTTTCAAAGACTATTTTGGAA 57.288 25.926 0.00 0.00 38.33 3.53
2028 2062 9.712305 TTTGTGTTTTTCAAAGACTATTTTGGA 57.288 25.926 0.00 0.00 38.33 3.53
2029 2063 9.753669 GTTTGTGTTTTTCAAAGACTATTTTGG 57.246 29.630 0.00 0.00 38.33 3.28
2038 2072 9.455847 CCAAATTTTGTTTGTGTTTTTCAAAGA 57.544 25.926 8.26 0.00 35.83 2.52
2039 2073 9.455847 TCCAAATTTTGTTTGTGTTTTTCAAAG 57.544 25.926 8.26 0.00 35.83 2.77
2040 2074 9.801873 TTCCAAATTTTGTTTGTGTTTTTCAAA 57.198 22.222 8.26 0.00 33.28 2.69
2041 2075 9.971922 ATTCCAAATTTTGTTTGTGTTTTTCAA 57.028 22.222 8.26 0.00 0.00 2.69
2042 2076 9.971922 AATTCCAAATTTTGTTTGTGTTTTTCA 57.028 22.222 8.26 0.00 0.00 2.69
2044 2078 8.706936 GCAATTCCAAATTTTGTTTGTGTTTTT 58.293 25.926 8.26 0.00 0.00 1.94
2045 2079 7.869429 TGCAATTCCAAATTTTGTTTGTGTTTT 59.131 25.926 8.26 0.00 0.00 2.43
2046 2080 7.373493 TGCAATTCCAAATTTTGTTTGTGTTT 58.627 26.923 8.26 0.00 0.00 2.83
2047 2081 6.917533 TGCAATTCCAAATTTTGTTTGTGTT 58.082 28.000 8.26 0.00 0.00 3.32
2048 2082 6.506500 TGCAATTCCAAATTTTGTTTGTGT 57.493 29.167 8.26 0.00 0.00 3.72
2049 2083 7.327761 TGTTTGCAATTCCAAATTTTGTTTGTG 59.672 29.630 0.00 2.96 37.09 3.33
2050 2084 7.373493 TGTTTGCAATTCCAAATTTTGTTTGT 58.627 26.923 0.00 0.00 37.09 2.83
2051 2085 7.754027 TCTGTTTGCAATTCCAAATTTTGTTTG 59.246 29.630 0.00 9.40 37.09 2.93
2052 2086 7.824672 TCTGTTTGCAATTCCAAATTTTGTTT 58.175 26.923 0.00 0.00 37.09 2.83
2053 2087 7.388460 TCTGTTTGCAATTCCAAATTTTGTT 57.612 28.000 0.00 0.00 37.09 2.83
2054 2088 6.998968 TCTGTTTGCAATTCCAAATTTTGT 57.001 29.167 0.00 0.00 37.09 2.83
2055 2089 8.859517 AAATCTGTTTGCAATTCCAAATTTTG 57.140 26.923 0.00 1.99 37.09 2.44
2056 2090 9.303537 CAAAATCTGTTTGCAATTCCAAATTTT 57.696 25.926 0.00 6.27 37.09 1.82
2057 2091 8.684520 TCAAAATCTGTTTGCAATTCCAAATTT 58.315 25.926 0.00 0.15 37.09 1.82
2058 2092 8.223177 TCAAAATCTGTTTGCAATTCCAAATT 57.777 26.923 0.00 0.00 37.09 1.82
2059 2093 7.804843 TCAAAATCTGTTTGCAATTCCAAAT 57.195 28.000 0.00 0.00 37.09 2.32
2060 2094 7.621428 TTCAAAATCTGTTTGCAATTCCAAA 57.379 28.000 0.00 0.00 32.66 3.28
2061 2095 7.621428 TTTCAAAATCTGTTTGCAATTCCAA 57.379 28.000 0.00 0.00 0.00 3.53
2062 2096 7.621428 TTTTCAAAATCTGTTTGCAATTCCA 57.379 28.000 0.00 0.00 0.00 3.53
2089 2123 8.356657 TGTTCTTATTTTCGAAAATGTCCACAT 58.643 29.630 35.21 17.32 38.90 3.21
2090 2124 7.708051 TGTTCTTATTTTCGAAAATGTCCACA 58.292 30.769 35.21 28.29 38.90 4.17
2091 2125 8.568732 TTGTTCTTATTTTCGAAAATGTCCAC 57.431 30.769 35.21 26.70 38.90 4.02
2092 2126 9.587772 TTTTGTTCTTATTTTCGAAAATGTCCA 57.412 25.926 35.21 23.57 38.90 4.02
2102 2136 9.862585 CCCTCAAAAATTTTGTTCTTATTTTCG 57.137 29.630 16.83 0.00 32.06 3.46
2108 2142 9.952030 AAAACTCCCTCAAAAATTTTGTTCTTA 57.048 25.926 16.83 0.00 0.00 2.10
2109 2143 8.862325 AAAACTCCCTCAAAAATTTTGTTCTT 57.138 26.923 16.83 2.01 0.00 2.52
2110 2144 8.862325 AAAAACTCCCTCAAAAATTTTGTTCT 57.138 26.923 16.83 0.00 0.00 3.01
2208 2242 9.019764 CATTCTTTTGAAATACGTTCAGTGTTT 57.980 29.630 0.00 0.00 46.85 2.83
2209 2243 8.402472 TCATTCTTTTGAAATACGTTCAGTGTT 58.598 29.630 0.00 0.00 46.85 3.32
2210 2244 7.925993 TCATTCTTTTGAAATACGTTCAGTGT 58.074 30.769 0.00 0.00 46.85 3.55
2211 2245 8.781067 TTCATTCTTTTGAAATACGTTCAGTG 57.219 30.769 0.00 0.00 46.85 3.66
2212 2246 8.836413 TCTTCATTCTTTTGAAATACGTTCAGT 58.164 29.630 0.00 0.00 46.85 3.41
2213 2247 9.663904 TTCTTCATTCTTTTGAAATACGTTCAG 57.336 29.630 0.00 0.00 46.85 3.02
2227 2261 9.889128 TGGAACTTCAAATTTTCTTCATTCTTT 57.111 25.926 0.00 0.00 0.00 2.52
2228 2262 9.889128 TTGGAACTTCAAATTTTCTTCATTCTT 57.111 25.926 0.00 0.00 0.00 2.52
2229 2263 9.317936 GTTGGAACTTCAAATTTTCTTCATTCT 57.682 29.630 0.00 0.00 0.00 2.40
2230 2264 9.097257 TGTTGGAACTTCAAATTTTCTTCATTC 57.903 29.630 0.00 0.00 0.00 2.67
2231 2265 9.617523 ATGTTGGAACTTCAAATTTTCTTCATT 57.382 25.926 0.00 0.00 0.00 2.57
2232 2266 9.264719 GATGTTGGAACTTCAAATTTTCTTCAT 57.735 29.630 0.00 0.00 34.34 2.57
2233 2267 8.477256 AGATGTTGGAACTTCAAATTTTCTTCA 58.523 29.630 7.83 0.00 36.02 3.02
2234 2268 8.877808 AGATGTTGGAACTTCAAATTTTCTTC 57.122 30.769 7.83 0.00 36.02 2.87
2235 2269 9.671279 AAAGATGTTGGAACTTCAAATTTTCTT 57.329 25.926 7.83 0.00 36.02 2.52
2239 2273 9.750125 GACTAAAGATGTTGGAACTTCAAATTT 57.250 29.630 7.83 0.00 36.02 1.82
2240 2274 8.912988 TGACTAAAGATGTTGGAACTTCAAATT 58.087 29.630 7.83 3.65 36.02 1.82
2241 2275 8.463930 TGACTAAAGATGTTGGAACTTCAAAT 57.536 30.769 7.83 0.00 36.02 2.32
2242 2276 7.873719 TGACTAAAGATGTTGGAACTTCAAA 57.126 32.000 7.83 0.00 36.02 2.69
2243 2277 7.873719 TTGACTAAAGATGTTGGAACTTCAA 57.126 32.000 7.83 0.00 36.02 2.69
2244 2278 7.873719 TTTGACTAAAGATGTTGGAACTTCA 57.126 32.000 7.83 0.00 36.02 3.02
2245 2279 9.750125 ATTTTTGACTAAAGATGTTGGAACTTC 57.250 29.630 0.00 0.00 34.37 3.01
2246 2280 9.533253 CATTTTTGACTAAAGATGTTGGAACTT 57.467 29.630 0.00 0.00 35.05 2.66
2247 2281 8.143835 CCATTTTTGACTAAAGATGTTGGAACT 58.856 33.333 0.00 0.00 36.93 3.01
2248 2282 8.141268 TCCATTTTTGACTAAAGATGTTGGAAC 58.859 33.333 0.00 0.00 36.93 3.62
2249 2283 8.243961 TCCATTTTTGACTAAAGATGTTGGAA 57.756 30.769 0.00 0.00 36.93 3.53
2250 2284 7.831691 TCCATTTTTGACTAAAGATGTTGGA 57.168 32.000 0.00 0.00 36.93 3.53
2251 2285 8.928733 CATTCCATTTTTGACTAAAGATGTTGG 58.071 33.333 0.00 0.00 36.93 3.77
2252 2286 9.480053 ACATTCCATTTTTGACTAAAGATGTTG 57.520 29.630 0.00 0.00 36.93 3.33
2254 2288 9.696917 GAACATTCCATTTTTGACTAAAGATGT 57.303 29.630 0.00 0.00 36.93 3.06
2255 2289 9.918630 AGAACATTCCATTTTTGACTAAAGATG 57.081 29.630 0.00 0.00 37.84 2.90
2258 2292 9.329913 CGTAGAACATTCCATTTTTGACTAAAG 57.670 33.333 0.00 0.00 0.00 1.85
2259 2293 9.058174 TCGTAGAACATTCCATTTTTGACTAAA 57.942 29.630 0.00 0.00 0.00 1.85
2260 2294 8.610248 TCGTAGAACATTCCATTTTTGACTAA 57.390 30.769 0.00 0.00 0.00 2.24
2261 2295 8.610248 TTCGTAGAACATTCCATTTTTGACTA 57.390 30.769 0.00 0.00 45.90 2.59
2262 2296 7.504924 TTCGTAGAACATTCCATTTTTGACT 57.495 32.000 0.00 0.00 45.90 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.