Multiple sequence alignment - TraesCS3A01G153000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G153000 chr3A 100.000 3628 0 0 1 3628 143532125 143535752 0.000000e+00 6700
1 TraesCS3A01G153000 chr3A 75.556 810 161 27 1095 1887 143017530 143018319 7.400000e-97 364
2 TraesCS3A01G153000 chr3D 95.425 1705 67 6 946 2645 131241398 131243096 0.000000e+00 2706
3 TraesCS3A01G153000 chr3D 75.893 784 161 23 1118 1887 130974534 130975303 3.420000e-100 375
4 TraesCS3A01G153000 chr3D 94.475 181 6 3 2850 3030 131243141 131243317 3.570000e-70 276
5 TraesCS3A01G153000 chr3D 82.770 296 29 10 658 946 131240919 131241199 1.010000e-60 244
6 TraesCS3A01G153000 chr3D 80.000 250 28 12 3043 3288 131243304 131243535 8.060000e-37 165
7 TraesCS3A01G153000 chr3B 93.251 1704 78 26 959 2645 187575639 187577322 0.000000e+00 2475
8 TraesCS3A01G153000 chr3B 93.535 727 40 4 946 1666 187552471 187553196 0.000000e+00 1075
9 TraesCS3A01G153000 chr3B 83.069 945 108 21 12 946 187554694 187555596 0.000000e+00 811
10 TraesCS3A01G153000 chr3B 81.347 772 101 24 189 946 187574681 187575423 4.040000e-164 588
11 TraesCS3A01G153000 chr3B 89.489 333 16 8 2963 3294 187577420 187577734 1.570000e-108 403
12 TraesCS3A01G153000 chr3B 75.789 760 159 20 1140 1887 187447970 187448716 9.580000e-96 361
13 TraesCS3A01G153000 chr3B 86.131 137 17 2 3476 3611 187577713 187577848 2.920000e-31 147
14 TraesCS3A01G153000 chr1D 81.647 850 133 17 1121 1953 236856507 236857350 0.000000e+00 684
15 TraesCS3A01G153000 chr1D 79.266 627 105 12 2016 2623 236857471 236858091 7.250000e-112 414
16 TraesCS3A01G153000 chr1A 81.081 851 136 18 1121 1953 308806444 308805601 0.000000e+00 656
17 TraesCS3A01G153000 chr1A 79.808 624 102 11 2024 2629 308805498 308804881 2.000000e-117 433
18 TraesCS3A01G153000 chr1A 96.703 182 5 1 2654 2834 463492318 463492137 5.890000e-78 302
19 TraesCS3A01G153000 chr1A 92.424 198 13 1 3299 3496 521869410 521869215 7.670000e-72 281
20 TraesCS3A01G153000 chr1A 92.386 197 14 1 3301 3497 440024307 440024502 2.760000e-71 279
21 TraesCS3A01G153000 chr1B 80.542 848 143 16 1118 1948 342322604 342323446 1.840000e-177 632
22 TraesCS3A01G153000 chr1B 79.585 627 103 12 2016 2623 342323555 342324175 3.350000e-115 425
23 TraesCS3A01G153000 chr5A 98.343 181 3 0 2655 2835 458601212 458601032 5.850000e-83 318
24 TraesCS3A01G153000 chr5A 95.135 185 8 1 2652 2835 564537229 564537413 1.270000e-74 291
25 TraesCS3A01G153000 chr5A 92.574 202 15 0 3299 3500 672347914 672347713 1.270000e-74 291
26 TraesCS3A01G153000 chr5A 91.960 199 16 0 3299 3497 362164301 362164103 2.760000e-71 279
27 TraesCS3A01G153000 chr7B 96.739 184 5 1 2655 2837 651525404 651525587 4.550000e-79 305
28 TraesCS3A01G153000 chr4A 96.685 181 6 0 2655 2835 100677173 100677353 5.890000e-78 302
29 TraesCS3A01G153000 chr4A 93.443 183 10 1 2655 2835 598331467 598331649 1.660000e-68 270
30 TraesCS3A01G153000 chr6A 95.628 183 7 1 2655 2836 103674694 103674512 3.540000e-75 292
31 TraesCS3A01G153000 chr6A 90.777 206 17 1 3290 3495 78961128 78961331 1.280000e-69 274
32 TraesCS3A01G153000 chr2B 92.195 205 14 1 3292 3496 138630602 138630804 4.580000e-74 289
33 TraesCS3A01G153000 chr7A 92.500 200 13 1 3296 3495 267055918 267056115 5.930000e-73 285
34 TraesCS3A01G153000 chr7A 91.220 205 14 3 3293 3497 69160774 69160974 3.570000e-70 276
35 TraesCS3A01G153000 chr7A 92.513 187 12 1 2651 2835 48232951 48233137 2.150000e-67 267
36 TraesCS3A01G153000 chr6B 92.500 200 14 1 3296 3495 402579911 402580109 5.930000e-73 285
37 TraesCS3A01G153000 chr6B 94.475 181 7 2 2655 2835 674159715 674159538 3.570000e-70 276


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G153000 chr3A 143532125 143535752 3627 False 6700.00 6700 100.0000 1 3628 1 chr3A.!!$F2 3627
1 TraesCS3A01G153000 chr3A 143017530 143018319 789 False 364.00 364 75.5560 1095 1887 1 chr3A.!!$F1 792
2 TraesCS3A01G153000 chr3D 131240919 131243535 2616 False 847.75 2706 88.1675 658 3288 4 chr3D.!!$F2 2630
3 TraesCS3A01G153000 chr3D 130974534 130975303 769 False 375.00 375 75.8930 1118 1887 1 chr3D.!!$F1 769
4 TraesCS3A01G153000 chr3B 187552471 187555596 3125 False 943.00 1075 88.3020 12 1666 2 chr3B.!!$F2 1654
5 TraesCS3A01G153000 chr3B 187574681 187577848 3167 False 903.25 2475 87.5545 189 3611 4 chr3B.!!$F3 3422
6 TraesCS3A01G153000 chr3B 187447970 187448716 746 False 361.00 361 75.7890 1140 1887 1 chr3B.!!$F1 747
7 TraesCS3A01G153000 chr1D 236856507 236858091 1584 False 549.00 684 80.4565 1121 2623 2 chr1D.!!$F1 1502
8 TraesCS3A01G153000 chr1A 308804881 308806444 1563 True 544.50 656 80.4445 1121 2629 2 chr1A.!!$R3 1508
9 TraesCS3A01G153000 chr1B 342322604 342324175 1571 False 528.50 632 80.0635 1118 2623 2 chr1B.!!$F1 1505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
831 848 0.037882 GCCTCTGCTTTTTCTTGCCC 60.038 55.0 0.0 0.0 33.53 5.36 F
986 1215 0.179108 AGAAGCCCATAACGCTCGTC 60.179 55.0 0.0 0.0 34.84 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2201 3213 0.108756 GTAGCGTCTCCTTGACCACC 60.109 60.000 0.00 0.00 42.49 4.61 R
2816 4313 1.005975 GCGAGCAATGCTACACTTACG 60.006 52.381 8.12 6.81 39.88 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.827568 GTGGTTATTTCGTAAAGTGTCGA 57.172 39.130 0.00 0.00 0.00 4.20
23 24 6.214205 GTGGTTATTTCGTAAAGTGTCGAA 57.786 37.500 0.00 0.00 42.82 3.71
24 25 6.067039 GTGGTTATTTCGTAAAGTGTCGAAC 58.933 40.000 0.00 0.00 43.89 3.95
25 26 5.177327 TGGTTATTTCGTAAAGTGTCGAACC 59.823 40.000 0.00 0.00 43.89 3.62
26 27 5.389830 GGTTATTTCGTAAAGTGTCGAACCC 60.390 44.000 0.00 0.00 43.89 4.11
27 28 2.886862 TTCGTAAAGTGTCGAACCCA 57.113 45.000 0.00 0.00 40.34 4.51
28 29 2.138596 TCGTAAAGTGTCGAACCCAC 57.861 50.000 0.00 0.00 33.13 4.61
29 30 1.408340 TCGTAAAGTGTCGAACCCACA 59.592 47.619 7.32 0.00 35.24 4.17
30 31 1.790623 CGTAAAGTGTCGAACCCACAG 59.209 52.381 7.32 0.00 35.24 3.66
31 32 2.140717 GTAAAGTGTCGAACCCACAGG 58.859 52.381 7.32 0.00 35.24 4.00
32 33 0.834612 AAAGTGTCGAACCCACAGGA 59.165 50.000 7.32 0.00 35.24 3.86
33 34 0.834612 AAGTGTCGAACCCACAGGAA 59.165 50.000 7.32 0.00 35.24 3.36
34 35 0.834612 AGTGTCGAACCCACAGGAAA 59.165 50.000 7.32 0.00 35.24 3.13
35 36 0.942252 GTGTCGAACCCACAGGAAAC 59.058 55.000 0.13 0.00 36.73 2.78
36 37 0.531090 TGTCGAACCCACAGGAAACG 60.531 55.000 0.00 0.00 36.73 3.60
37 38 0.249573 GTCGAACCCACAGGAAACGA 60.250 55.000 0.00 0.00 36.73 3.85
38 39 0.464870 TCGAACCCACAGGAAACGAA 59.535 50.000 0.00 0.00 34.65 3.85
39 40 1.134461 TCGAACCCACAGGAAACGAAA 60.134 47.619 0.00 0.00 34.65 3.46
40 41 1.671845 CGAACCCACAGGAAACGAAAA 59.328 47.619 0.00 0.00 36.73 2.29
41 42 2.286772 CGAACCCACAGGAAACGAAAAG 60.287 50.000 0.00 0.00 36.73 2.27
42 43 2.721425 ACCCACAGGAAACGAAAAGA 57.279 45.000 0.00 0.00 36.73 2.52
43 44 3.007473 ACCCACAGGAAACGAAAAGAA 57.993 42.857 0.00 0.00 36.73 2.52
44 45 3.562182 ACCCACAGGAAACGAAAAGAAT 58.438 40.909 0.00 0.00 36.73 2.40
45 46 3.317993 ACCCACAGGAAACGAAAAGAATG 59.682 43.478 0.00 0.00 36.73 2.67
46 47 3.568007 CCCACAGGAAACGAAAAGAATGA 59.432 43.478 0.00 0.00 33.47 2.57
47 48 4.537015 CCACAGGAAACGAAAAGAATGAC 58.463 43.478 0.00 0.00 0.00 3.06
48 49 4.036262 CCACAGGAAACGAAAAGAATGACA 59.964 41.667 0.00 0.00 0.00 3.58
49 50 5.278463 CCACAGGAAACGAAAAGAATGACAT 60.278 40.000 0.00 0.00 0.00 3.06
50 51 6.208644 CACAGGAAACGAAAAGAATGACATT 58.791 36.000 0.00 0.00 0.00 2.71
51 52 7.359595 CACAGGAAACGAAAAGAATGACATTA 58.640 34.615 0.00 0.00 0.00 1.90
52 53 8.023128 CACAGGAAACGAAAAGAATGACATTAT 58.977 33.333 0.00 0.00 0.00 1.28
53 54 8.237267 ACAGGAAACGAAAAGAATGACATTATC 58.763 33.333 0.00 0.00 0.00 1.75
54 55 8.236586 CAGGAAACGAAAAGAATGACATTATCA 58.763 33.333 0.00 0.00 43.13 2.15
55 56 8.792633 AGGAAACGAAAAGAATGACATTATCAA 58.207 29.630 0.00 0.00 41.93 2.57
56 57 8.850452 GGAAACGAAAAGAATGACATTATCAAC 58.150 33.333 0.00 0.00 41.93 3.18
57 58 8.742554 AAACGAAAAGAATGACATTATCAACC 57.257 30.769 0.00 0.00 41.93 3.77
58 59 6.852664 ACGAAAAGAATGACATTATCAACCC 58.147 36.000 0.00 0.00 41.93 4.11
59 60 6.127730 ACGAAAAGAATGACATTATCAACCCC 60.128 38.462 0.00 0.00 41.93 4.95
60 61 5.835113 AAAGAATGACATTATCAACCCCG 57.165 39.130 0.00 0.00 41.93 5.73
61 62 4.503714 AGAATGACATTATCAACCCCGT 57.496 40.909 0.00 0.00 41.93 5.28
62 63 5.623956 AGAATGACATTATCAACCCCGTA 57.376 39.130 0.00 0.00 41.93 4.02
63 64 5.996644 AGAATGACATTATCAACCCCGTAA 58.003 37.500 0.00 0.00 41.93 3.18
64 65 5.820947 AGAATGACATTATCAACCCCGTAAC 59.179 40.000 0.00 0.00 41.93 2.50
65 66 4.829872 TGACATTATCAACCCCGTAACT 57.170 40.909 0.00 0.00 33.02 2.24
66 67 5.936187 TGACATTATCAACCCCGTAACTA 57.064 39.130 0.00 0.00 33.02 2.24
67 68 6.488769 TGACATTATCAACCCCGTAACTAT 57.511 37.500 0.00 0.00 33.02 2.12
68 69 6.285224 TGACATTATCAACCCCGTAACTATG 58.715 40.000 0.00 0.00 33.02 2.23
69 70 6.126997 TGACATTATCAACCCCGTAACTATGT 60.127 38.462 0.00 0.00 33.02 2.29
70 71 6.655930 ACATTATCAACCCCGTAACTATGTT 58.344 36.000 0.00 0.00 0.00 2.71
71 72 7.794041 ACATTATCAACCCCGTAACTATGTTA 58.206 34.615 0.00 0.00 0.00 2.41
72 73 8.434392 ACATTATCAACCCCGTAACTATGTTAT 58.566 33.333 0.00 0.00 0.00 1.89
73 74 8.932791 CATTATCAACCCCGTAACTATGTTATC 58.067 37.037 0.00 0.00 0.00 1.75
74 75 5.936187 TCAACCCCGTAACTATGTTATCA 57.064 39.130 0.00 0.00 0.00 2.15
75 76 5.663456 TCAACCCCGTAACTATGTTATCAC 58.337 41.667 0.00 0.00 0.00 3.06
76 77 4.677673 ACCCCGTAACTATGTTATCACC 57.322 45.455 0.00 0.00 0.00 4.02
77 78 4.292643 ACCCCGTAACTATGTTATCACCT 58.707 43.478 0.00 0.00 0.00 4.00
78 79 5.457686 ACCCCGTAACTATGTTATCACCTA 58.542 41.667 0.00 0.00 0.00 3.08
79 80 6.080009 ACCCCGTAACTATGTTATCACCTAT 58.920 40.000 0.00 0.00 0.00 2.57
80 81 6.014840 ACCCCGTAACTATGTTATCACCTATG 60.015 42.308 0.00 0.00 0.00 2.23
81 82 5.867716 CCCGTAACTATGTTATCACCTATGC 59.132 44.000 0.00 0.00 0.00 3.14
82 83 6.452242 CCGTAACTATGTTATCACCTATGCA 58.548 40.000 0.00 0.00 0.00 3.96
83 84 6.586463 CCGTAACTATGTTATCACCTATGCAG 59.414 42.308 0.00 0.00 0.00 4.41
84 85 7.145985 CGTAACTATGTTATCACCTATGCAGT 58.854 38.462 0.00 0.00 0.00 4.40
85 86 7.652105 CGTAACTATGTTATCACCTATGCAGTT 59.348 37.037 0.00 0.00 0.00 3.16
86 87 9.326413 GTAACTATGTTATCACCTATGCAGTTT 57.674 33.333 0.00 0.00 0.00 2.66
87 88 7.792374 ACTATGTTATCACCTATGCAGTTTG 57.208 36.000 0.00 0.00 0.00 2.93
88 89 7.338710 ACTATGTTATCACCTATGCAGTTTGT 58.661 34.615 0.00 0.00 0.00 2.83
89 90 8.482943 ACTATGTTATCACCTATGCAGTTTGTA 58.517 33.333 0.00 0.00 0.00 2.41
90 91 9.494271 CTATGTTATCACCTATGCAGTTTGTAT 57.506 33.333 0.00 0.00 0.00 2.29
91 92 7.552458 TGTTATCACCTATGCAGTTTGTATG 57.448 36.000 0.00 0.00 0.00 2.39
92 93 6.038161 TGTTATCACCTATGCAGTTTGTATGC 59.962 38.462 0.00 0.00 44.11 3.14
99 100 2.810439 GCAGTTTGTATGCACCCAAA 57.190 45.000 8.18 8.18 43.31 3.28
100 101 3.317603 GCAGTTTGTATGCACCCAAAT 57.682 42.857 13.80 3.63 43.31 2.32
101 102 4.448537 GCAGTTTGTATGCACCCAAATA 57.551 40.909 13.80 0.00 43.31 1.40
102 103 4.423732 GCAGTTTGTATGCACCCAAATAG 58.576 43.478 13.80 10.97 43.31 1.73
103 104 4.677779 GCAGTTTGTATGCACCCAAATAGG 60.678 45.833 13.80 8.88 43.31 2.57
104 105 4.704540 CAGTTTGTATGCACCCAAATAGGA 59.295 41.667 13.80 0.00 41.22 2.94
105 106 4.949856 AGTTTGTATGCACCCAAATAGGAG 59.050 41.667 13.80 0.00 41.22 3.69
106 107 4.584638 TTGTATGCACCCAAATAGGAGT 57.415 40.909 0.00 0.00 41.22 3.85
107 108 4.584638 TGTATGCACCCAAATAGGAGTT 57.415 40.909 0.00 0.00 41.22 3.01
108 109 4.523083 TGTATGCACCCAAATAGGAGTTC 58.477 43.478 0.00 0.00 41.22 3.01
109 110 3.737559 ATGCACCCAAATAGGAGTTCA 57.262 42.857 0.00 0.00 41.22 3.18
110 111 3.517296 TGCACCCAAATAGGAGTTCAA 57.483 42.857 0.00 0.00 41.22 2.69
111 112 3.838565 TGCACCCAAATAGGAGTTCAAA 58.161 40.909 0.00 0.00 41.22 2.69
112 113 4.219115 TGCACCCAAATAGGAGTTCAAAA 58.781 39.130 0.00 0.00 41.22 2.44
113 114 4.651503 TGCACCCAAATAGGAGTTCAAAAA 59.348 37.500 0.00 0.00 41.22 1.94
114 115 5.306678 TGCACCCAAATAGGAGTTCAAAAAT 59.693 36.000 0.00 0.00 41.22 1.82
115 116 5.639082 GCACCCAAATAGGAGTTCAAAAATG 59.361 40.000 0.00 0.00 41.22 2.32
116 117 6.165577 CACCCAAATAGGAGTTCAAAAATGG 58.834 40.000 0.00 0.00 41.22 3.16
117 118 5.843969 ACCCAAATAGGAGTTCAAAAATGGT 59.156 36.000 0.00 0.00 41.22 3.55
118 119 6.014584 ACCCAAATAGGAGTTCAAAAATGGTC 60.015 38.462 0.00 0.00 41.22 4.02
119 120 6.398095 CCAAATAGGAGTTCAAAAATGGTCC 58.602 40.000 0.00 0.00 41.22 4.46
120 121 6.014669 CCAAATAGGAGTTCAAAAATGGTCCA 60.015 38.462 0.00 0.00 41.22 4.02
121 122 6.590234 AATAGGAGTTCAAAAATGGTCCAC 57.410 37.500 0.00 0.00 0.00 4.02
122 123 4.184649 AGGAGTTCAAAAATGGTCCACT 57.815 40.909 0.00 0.00 0.00 4.00
123 124 4.145052 AGGAGTTCAAAAATGGTCCACTC 58.855 43.478 0.00 0.00 0.00 3.51
124 125 3.255888 GGAGTTCAAAAATGGTCCACTCC 59.744 47.826 0.00 0.00 41.50 3.85
125 126 3.888930 GAGTTCAAAAATGGTCCACTCCA 59.111 43.478 0.00 0.00 42.01 3.86
127 128 4.524328 AGTTCAAAAATGGTCCACTCCATC 59.476 41.667 0.00 0.00 46.14 3.51
128 129 3.081061 TCAAAAATGGTCCACTCCATCG 58.919 45.455 0.00 0.00 46.14 3.84
129 130 2.128771 AAAATGGTCCACTCCATCGG 57.871 50.000 0.00 0.00 46.14 4.18
130 131 0.991920 AAATGGTCCACTCCATCGGT 59.008 50.000 0.00 0.00 46.14 4.69
131 132 0.991920 AATGGTCCACTCCATCGGTT 59.008 50.000 0.00 0.00 46.14 4.44
132 133 0.253044 ATGGTCCACTCCATCGGTTG 59.747 55.000 0.00 0.00 43.85 3.77
133 134 1.745489 GGTCCACTCCATCGGTTGC 60.745 63.158 0.00 0.00 0.00 4.17
134 135 1.296715 GTCCACTCCATCGGTTGCT 59.703 57.895 0.00 0.00 0.00 3.91
135 136 0.535335 GTCCACTCCATCGGTTGCTA 59.465 55.000 0.00 0.00 0.00 3.49
136 137 0.535335 TCCACTCCATCGGTTGCTAC 59.465 55.000 0.00 0.00 0.00 3.58
137 138 0.462047 CCACTCCATCGGTTGCTACC 60.462 60.000 7.33 7.33 41.33 3.18
151 152 6.431198 GGTTGCTACCGAAAAGATAAATCA 57.569 37.500 0.36 0.00 34.01 2.57
152 153 6.487103 GGTTGCTACCGAAAAGATAAATCAG 58.513 40.000 0.36 0.00 34.01 2.90
153 154 6.093633 GGTTGCTACCGAAAAGATAAATCAGT 59.906 38.462 0.36 0.00 34.01 3.41
154 155 7.361799 GGTTGCTACCGAAAAGATAAATCAGTT 60.362 37.037 0.36 0.00 34.01 3.16
155 156 7.681939 TGCTACCGAAAAGATAAATCAGTTT 57.318 32.000 0.00 0.00 0.00 2.66
156 157 8.106247 TGCTACCGAAAAGATAAATCAGTTTT 57.894 30.769 0.00 0.00 0.00 2.43
157 158 9.221933 TGCTACCGAAAAGATAAATCAGTTTTA 57.778 29.630 0.00 0.00 34.37 1.52
158 159 9.486857 GCTACCGAAAAGATAAATCAGTTTTAC 57.513 33.333 0.00 0.00 32.71 2.01
186 187 9.647797 AAACTACCAAAGAAAAGGTAAAAACAG 57.352 29.630 0.00 0.00 39.72 3.16
187 188 7.778083 ACTACCAAAGAAAAGGTAAAAACAGG 58.222 34.615 0.00 0.00 39.72 4.00
188 189 6.860790 ACCAAAGAAAAGGTAAAAACAGGA 57.139 33.333 0.00 0.00 36.07 3.86
189 190 7.247456 ACCAAAGAAAAGGTAAAAACAGGAA 57.753 32.000 0.00 0.00 36.07 3.36
190 191 7.681679 ACCAAAGAAAAGGTAAAAACAGGAAA 58.318 30.769 0.00 0.00 36.07 3.13
191 192 8.325787 ACCAAAGAAAAGGTAAAAACAGGAAAT 58.674 29.630 0.00 0.00 36.07 2.17
192 193 9.825109 CCAAAGAAAAGGTAAAAACAGGAAATA 57.175 29.630 0.00 0.00 0.00 1.40
199 200 9.826574 AAAGGTAAAAACAGGAAATAAAAGGAC 57.173 29.630 0.00 0.00 0.00 3.85
200 201 8.541899 AGGTAAAAACAGGAAATAAAAGGACA 57.458 30.769 0.00 0.00 0.00 4.02
216 217 6.670695 AAAGGACAAAACTAAATGATGGCT 57.329 33.333 0.00 0.00 0.00 4.75
235 236 4.202182 TGGCTGAGTTTGAGTAGTAAACGT 60.202 41.667 0.00 0.00 41.61 3.99
239 240 6.129141 GCTGAGTTTGAGTAGTAAACGTTCTC 60.129 42.308 0.00 4.00 41.61 2.87
240 241 7.035840 TGAGTTTGAGTAGTAAACGTTCTCT 57.964 36.000 0.00 5.85 41.61 3.10
247 248 6.072286 TGAGTAGTAAACGTTCTCTAGGGTTG 60.072 42.308 0.00 0.00 0.00 3.77
250 251 2.457366 AACGTTCTCTAGGGTTGCAG 57.543 50.000 0.00 0.00 0.00 4.41
252 253 1.546476 ACGTTCTCTAGGGTTGCAGAG 59.454 52.381 0.00 0.00 39.77 3.35
254 255 2.753452 CGTTCTCTAGGGTTGCAGAGTA 59.247 50.000 0.00 0.00 39.48 2.59
257 258 5.112686 GTTCTCTAGGGTTGCAGAGTAATG 58.887 45.833 0.00 0.00 39.48 1.90
259 260 5.211973 TCTCTAGGGTTGCAGAGTAATGAT 58.788 41.667 0.00 0.00 39.48 2.45
268 269 6.425504 GTTGCAGAGTAATGATCACTAATGC 58.574 40.000 0.00 4.02 38.42 3.56
315 316 5.336690 GCATGGTTCTAGATCTCCATCTCTC 60.337 48.000 16.60 7.47 40.18 3.20
335 336 6.777580 TCTCTCTAGCCACATGTTATATGTCA 59.222 38.462 0.00 0.00 0.00 3.58
343 344 6.127758 GCCACATGTTATATGTCAAAAGTGGA 60.128 38.462 21.08 0.00 44.05 4.02
345 346 7.250569 CACATGTTATATGTCAAAAGTGGACC 58.749 38.462 0.00 0.00 34.36 4.46
352 353 2.901192 TGTCAAAAGTGGACCGATCCTA 59.099 45.455 0.00 0.00 46.43 2.94
355 356 4.159135 GTCAAAAGTGGACCGATCCTAGTA 59.841 45.833 0.00 0.00 46.43 1.82
358 359 2.652590 AGTGGACCGATCCTAGTACAC 58.347 52.381 11.02 11.02 46.37 2.90
361 362 4.139786 GTGGACCGATCCTAGTACACATA 58.860 47.826 13.19 0.00 45.49 2.29
373 374 2.421073 AGTACACATACGCGCTACAAGA 59.579 45.455 5.73 0.00 36.33 3.02
374 375 1.909376 ACACATACGCGCTACAAGAG 58.091 50.000 5.73 0.00 0.00 2.85
378 379 4.042398 CACATACGCGCTACAAGAGTAAT 58.958 43.478 5.73 0.00 0.00 1.89
379 380 4.146616 CACATACGCGCTACAAGAGTAATC 59.853 45.833 5.73 0.00 0.00 1.75
381 382 5.237996 ACATACGCGCTACAAGAGTAATCTA 59.762 40.000 5.73 0.00 0.00 1.98
383 384 3.376234 ACGCGCTACAAGAGTAATCTACA 59.624 43.478 5.73 0.00 0.00 2.74
384 385 4.036498 ACGCGCTACAAGAGTAATCTACAT 59.964 41.667 5.73 0.00 0.00 2.29
387 388 6.249471 CGCGCTACAAGAGTAATCTACATATG 59.751 42.308 5.56 0.00 0.00 1.78
388 389 6.034044 GCGCTACAAGAGTAATCTACATATGC 59.966 42.308 0.00 0.00 0.00 3.14
391 392 7.329717 GCTACAAGAGTAATCTACATATGCCAC 59.670 40.741 1.58 0.00 0.00 5.01
392 393 6.525629 ACAAGAGTAATCTACATATGCCACC 58.474 40.000 1.58 0.00 0.00 4.61
393 394 5.392767 AGAGTAATCTACATATGCCACCG 57.607 43.478 1.58 0.00 0.00 4.94
394 395 3.926616 AGTAATCTACATATGCCACCGC 58.073 45.455 1.58 0.00 0.00 5.68
395 396 2.185004 AATCTACATATGCCACCGCC 57.815 50.000 1.58 0.00 0.00 6.13
396 397 1.352083 ATCTACATATGCCACCGCCT 58.648 50.000 1.58 0.00 0.00 5.52
408 416 2.076863 CCACCGCCTTAGTTTTCTCAG 58.923 52.381 0.00 0.00 0.00 3.35
435 443 7.573283 GCTGGTTTTCACTAGGTTGATTAAGTC 60.573 40.741 0.00 0.00 32.08 3.01
441 449 6.708285 TCACTAGGTTGATTAAGTCTTTCCC 58.292 40.000 0.00 0.00 0.00 3.97
443 451 5.550403 ACTAGGTTGATTAAGTCTTTCCCCA 59.450 40.000 0.00 0.00 0.00 4.96
444 452 4.663334 AGGTTGATTAAGTCTTTCCCCAC 58.337 43.478 0.00 0.00 0.00 4.61
450 458 0.250338 AAGTCTTTCCCCACAGACGC 60.250 55.000 0.00 0.00 43.69 5.19
453 461 0.534203 TCTTTCCCCACAGACGCAAC 60.534 55.000 0.00 0.00 0.00 4.17
455 463 2.272230 TTTCCCCACAGACGCAACCA 62.272 55.000 0.00 0.00 0.00 3.67
461 469 2.422597 CCACAGACGCAACCATTCTTA 58.577 47.619 0.00 0.00 0.00 2.10
472 480 2.897326 AACCATTCTTAGGTTTGCCACC 59.103 45.455 0.00 0.00 46.85 4.61
483 491 1.063070 TTTGCCACCACTCCCCTACA 61.063 55.000 0.00 0.00 0.00 2.74
484 492 1.063070 TTGCCACCACTCCCCTACAA 61.063 55.000 0.00 0.00 0.00 2.41
485 493 0.844661 TGCCACCACTCCCCTACAAT 60.845 55.000 0.00 0.00 0.00 2.71
500 509 4.679654 CCCTACAATTGCAAAGACGAAAAC 59.320 41.667 1.71 0.00 0.00 2.43
501 510 4.679654 CCTACAATTGCAAAGACGAAAACC 59.320 41.667 1.71 0.00 0.00 3.27
502 511 3.112580 ACAATTGCAAAGACGAAAACCG 58.887 40.909 1.71 0.00 45.44 4.44
503 512 3.181495 ACAATTGCAAAGACGAAAACCGA 60.181 39.130 1.71 0.00 41.76 4.69
513 522 7.215755 GCAAAGACGAAAACCGAAGAATATTAC 59.784 37.037 0.00 0.00 41.76 1.89
533 542 4.338379 ACTGTCACCTCTTTACCTCAAC 57.662 45.455 0.00 0.00 0.00 3.18
536 545 3.181458 TGTCACCTCTTTACCTCAACACC 60.181 47.826 0.00 0.00 0.00 4.16
537 546 3.071167 GTCACCTCTTTACCTCAACACCT 59.929 47.826 0.00 0.00 0.00 4.00
545 554 5.605488 TCTTTACCTCAACACCTTAACCTCT 59.395 40.000 0.00 0.00 0.00 3.69
547 556 6.600882 TTACCTCAACACCTTAACCTCTAG 57.399 41.667 0.00 0.00 0.00 2.43
549 558 5.152934 ACCTCAACACCTTAACCTCTAGAA 58.847 41.667 0.00 0.00 0.00 2.10
550 559 5.011840 ACCTCAACACCTTAACCTCTAGAAC 59.988 44.000 0.00 0.00 0.00 3.01
555 564 8.653191 TCAACACCTTAACCTCTAGAACAATAA 58.347 33.333 0.00 0.00 0.00 1.40
619 628 6.373774 AGTGAAGCCTTCTCTCAACATTAATG 59.626 38.462 14.01 14.01 0.00 1.90
645 655 6.398918 AGGCTATTAGCTGGACATAAATACG 58.601 40.000 15.02 0.00 41.99 3.06
647 657 6.872020 GGCTATTAGCTGGACATAAATACGAA 59.128 38.462 15.02 0.00 41.99 3.85
687 697 5.669164 AGGAATTCAGTAGTTGAGAGGTC 57.331 43.478 7.93 0.00 37.07 3.85
714 725 6.650120 AGACAAACAGGAAACTAGTTGAGAA 58.350 36.000 9.34 0.00 40.21 2.87
717 728 7.562135 ACAAACAGGAAACTAGTTGAGAAGTA 58.438 34.615 9.34 0.00 40.21 2.24
718 729 7.494952 ACAAACAGGAAACTAGTTGAGAAGTAC 59.505 37.037 9.34 0.00 40.21 2.73
719 730 6.980416 ACAGGAAACTAGTTGAGAAGTACT 57.020 37.500 9.34 0.00 40.21 2.73
720 731 6.983984 ACAGGAAACTAGTTGAGAAGTACTC 58.016 40.000 9.34 0.00 42.09 2.59
721 732 6.015265 ACAGGAAACTAGTTGAGAAGTACTCC 60.015 42.308 9.34 8.84 41.42 3.85
735 746 2.769095 AGTACTCCAGAAGAAGGCATCC 59.231 50.000 0.00 0.00 0.00 3.51
745 756 5.591472 CAGAAGAAGGCATCCACATAATTGA 59.409 40.000 0.00 0.00 0.00 2.57
750 762 7.520798 AGAAGGCATCCACATAATTGAATCTA 58.479 34.615 0.00 0.00 0.00 1.98
751 763 8.168725 AGAAGGCATCCACATAATTGAATCTAT 58.831 33.333 0.00 0.00 0.00 1.98
768 780 9.857656 TTGAATCTATATCTGAAGGCTGAAAAT 57.142 29.630 0.00 0.00 0.00 1.82
771 783 9.857656 AATCTATATCTGAAGGCTGAAAATGAA 57.142 29.630 0.00 0.00 0.00 2.57
789 801 7.703058 AAATGAATCGAGTGACCCTAAATTT 57.297 32.000 0.00 0.00 0.00 1.82
800 812 6.033966 GTGACCCTAAATTTATTTTCAGCGG 58.966 40.000 0.00 0.00 0.00 5.52
818 835 1.405821 CGGACTTACCACTAGCCTCTG 59.594 57.143 0.00 0.00 38.90 3.35
821 838 4.696596 GGACTTACCACTAGCCTCTGCTT 61.697 52.174 0.00 0.00 42.89 3.91
831 848 0.037882 GCCTCTGCTTTTTCTTGCCC 60.038 55.000 0.00 0.00 33.53 5.36
871 888 3.886505 AGTAACCACTCATCTCTCGATCC 59.113 47.826 0.00 0.00 0.00 3.36
891 908 5.710513 TCCATTTCCATTTCACTCAACAG 57.289 39.130 0.00 0.00 0.00 3.16
892 909 5.139727 TCCATTTCCATTTCACTCAACAGT 58.860 37.500 0.00 0.00 0.00 3.55
893 910 5.241506 TCCATTTCCATTTCACTCAACAGTC 59.758 40.000 0.00 0.00 0.00 3.51
894 911 4.811555 TTTCCATTTCACTCAACAGTCG 57.188 40.909 0.00 0.00 0.00 4.18
895 912 3.744238 TCCATTTCACTCAACAGTCGA 57.256 42.857 0.00 0.00 0.00 4.20
896 913 3.390135 TCCATTTCACTCAACAGTCGAC 58.610 45.455 7.70 7.70 0.00 4.20
897 914 3.130633 CCATTTCACTCAACAGTCGACA 58.869 45.455 19.50 0.00 0.00 4.35
955 1177 0.730840 GCATGGTTACCAGCGTTACC 59.269 55.000 10.74 0.00 41.24 2.85
982 1211 1.452108 GCCAGAAGCCCATAACGCT 60.452 57.895 0.00 0.00 38.53 5.07
985 1214 0.460284 CAGAAGCCCATAACGCTCGT 60.460 55.000 0.00 0.00 34.84 4.18
986 1215 0.179108 AGAAGCCCATAACGCTCGTC 60.179 55.000 0.00 0.00 34.84 4.20
987 1216 0.179108 GAAGCCCATAACGCTCGTCT 60.179 55.000 0.00 0.00 34.84 4.18
988 1217 0.249398 AAGCCCATAACGCTCGTCTT 59.751 50.000 0.00 0.00 34.84 3.01
991 1220 1.739371 GCCCATAACGCTCGTCTTTCT 60.739 52.381 0.00 0.00 0.00 2.52
992 1221 2.618053 CCCATAACGCTCGTCTTTCTT 58.382 47.619 0.00 0.00 0.00 2.52
1024 1259 1.803519 GTCTCGCCTCTTGCACTCG 60.804 63.158 0.00 0.00 41.33 4.18
1628 1871 2.642311 TGTATGAGGAAGGCAACAAGGA 59.358 45.455 0.00 0.00 41.41 3.36
1793 2036 0.526524 GTGCTCGAGAAGGTGATCGG 60.527 60.000 18.75 0.00 39.38 4.18
1893 2457 1.389555 TGGACGTGAGCGATACTGAT 58.610 50.000 0.00 0.00 42.00 2.90
1941 2505 2.689983 GACCGAAATCAAGGCCATCATT 59.310 45.455 5.01 0.00 0.00 2.57
1949 2515 3.772387 TCAAGGCCATCATTTTGGTACA 58.228 40.909 5.01 0.00 39.11 2.90
1950 2516 3.763360 TCAAGGCCATCATTTTGGTACAG 59.237 43.478 5.01 0.00 42.39 2.74
1951 2517 3.456380 AGGCCATCATTTTGGTACAGT 57.544 42.857 5.01 0.00 42.39 3.55
1953 2519 4.270008 AGGCCATCATTTTGGTACAGTAC 58.730 43.478 5.01 1.59 42.39 2.73
1966 2542 6.890663 TGGTACAGTACGTGTTTATTATGC 57.109 37.500 0.00 0.00 40.94 3.14
2099 3111 2.662596 GAGGTCATCACGCACCCA 59.337 61.111 0.00 0.00 32.45 4.51
2201 3213 2.103042 GCTGCACTACCTCAAGGCG 61.103 63.158 0.00 0.00 39.32 5.52
2507 3520 4.521062 GAGATGGCGCTGGCGAGT 62.521 66.667 19.31 3.16 42.83 4.18
2645 4119 7.000575 TCGTTAGATAAACTTGTTGCTATGC 57.999 36.000 0.00 0.00 35.81 3.14
2646 4120 6.592220 TCGTTAGATAAACTTGTTGCTATGCA 59.408 34.615 0.00 0.00 35.81 3.96
2647 4121 7.118535 TCGTTAGATAAACTTGTTGCTATGCAA 59.881 33.333 0.45 0.45 39.96 4.08
2649 4123 8.450964 GTTAGATAAACTTGTTGCTATGCAAGA 58.549 33.333 10.69 1.45 43.29 3.02
2663 4137 6.830324 TGCTATGCAAGAAGAACAATAATCCT 59.170 34.615 0.00 0.00 34.76 3.24
2664 4138 7.992608 TGCTATGCAAGAAGAACAATAATCCTA 59.007 33.333 0.00 0.00 34.76 2.94
2665 4139 8.286097 GCTATGCAAGAAGAACAATAATCCTAC 58.714 37.037 0.00 0.00 0.00 3.18
2666 4140 9.330063 CTATGCAAGAAGAACAATAATCCTACA 57.670 33.333 0.00 0.00 0.00 2.74
2667 4141 8.757982 ATGCAAGAAGAACAATAATCCTACAT 57.242 30.769 0.00 0.00 0.00 2.29
2668 4142 8.213518 TGCAAGAAGAACAATAATCCTACATC 57.786 34.615 0.00 0.00 0.00 3.06
2670 4144 9.547753 GCAAGAAGAACAATAATCCTACATCTA 57.452 33.333 0.00 0.00 0.00 1.98
2673 4147 8.915036 AGAAGAACAATAATCCTACATCTACGT 58.085 33.333 0.00 0.00 0.00 3.57
2675 4149 9.962783 AAGAACAATAATCCTACATCTACGTAC 57.037 33.333 0.00 0.00 0.00 3.67
2678 4152 7.368833 ACAATAATCCTACATCTACGTACAGC 58.631 38.462 0.00 0.00 0.00 4.40
2680 4154 5.440234 AATCCTACATCTACGTACAGCAG 57.560 43.478 0.00 0.00 0.00 4.24
2683 4157 2.826979 ACATCTACGTACAGCAGACG 57.173 50.000 0.00 3.83 45.75 4.18
2684 4158 2.353323 ACATCTACGTACAGCAGACGA 58.647 47.619 11.36 0.00 42.98 4.20
2685 4159 2.745821 ACATCTACGTACAGCAGACGAA 59.254 45.455 11.36 0.00 42.98 3.85
2686 4160 3.181509 ACATCTACGTACAGCAGACGAAG 60.182 47.826 11.36 0.00 42.98 3.79
2692 4189 3.162068 CGTACAGCAGACGAAGACTAAC 58.838 50.000 0.00 0.00 42.98 2.34
2695 4192 2.810274 ACAGCAGACGAAGACTAACGTA 59.190 45.455 7.43 0.00 42.74 3.57
2697 4194 4.224433 CAGCAGACGAAGACTAACGTAAA 58.776 43.478 7.43 0.00 42.74 2.01
2702 4199 3.311966 ACGAAGACTAACGTAAACTGCC 58.688 45.455 5.95 0.00 40.92 4.85
2703 4200 3.005155 ACGAAGACTAACGTAAACTGCCT 59.995 43.478 5.95 0.00 40.92 4.75
2707 4204 5.718724 AGACTAACGTAAACTGCCTAACT 57.281 39.130 0.00 0.00 0.00 2.24
2708 4205 6.824305 AGACTAACGTAAACTGCCTAACTA 57.176 37.500 0.00 0.00 0.00 2.24
2711 4208 8.309656 AGACTAACGTAAACTGCCTAACTAATT 58.690 33.333 0.00 0.00 0.00 1.40
2712 4209 9.573133 GACTAACGTAAACTGCCTAACTAATTA 57.427 33.333 0.00 0.00 0.00 1.40
2713 4210 9.927668 ACTAACGTAAACTGCCTAACTAATTAA 57.072 29.630 0.00 0.00 0.00 1.40
2715 4212 8.837788 AACGTAAACTGCCTAACTAATTAACT 57.162 30.769 0.00 0.00 0.00 2.24
2716 4213 8.837788 ACGTAAACTGCCTAACTAATTAACTT 57.162 30.769 0.00 0.00 0.00 2.66
2717 4214 8.929746 ACGTAAACTGCCTAACTAATTAACTTC 58.070 33.333 0.00 0.00 0.00 3.01
2718 4215 8.106348 CGTAAACTGCCTAACTAATTAACTTCG 58.894 37.037 0.00 0.00 0.00 3.79
2719 4216 6.980051 AACTGCCTAACTAATTAACTTCGG 57.020 37.500 0.00 0.00 0.00 4.30
2720 4217 4.874396 ACTGCCTAACTAATTAACTTCGGC 59.126 41.667 9.57 9.57 35.67 5.54
2721 4218 4.193865 TGCCTAACTAATTAACTTCGGCC 58.806 43.478 12.26 0.00 34.25 6.13
2722 4219 3.562973 GCCTAACTAATTAACTTCGGCCC 59.437 47.826 0.00 0.00 0.00 5.80
2723 4220 4.132336 CCTAACTAATTAACTTCGGCCCC 58.868 47.826 0.00 0.00 0.00 5.80
2724 4221 2.723322 ACTAATTAACTTCGGCCCCC 57.277 50.000 0.00 0.00 0.00 5.40
2745 4242 0.114168 TGATTTTCAGGTGGGTGGGG 59.886 55.000 0.00 0.00 0.00 4.96
2747 4244 2.746947 ATTTTCAGGTGGGTGGGGCC 62.747 60.000 0.00 0.00 0.00 5.80
2762 4259 3.421386 GCCCCTTCCTCCCCCTTC 61.421 72.222 0.00 0.00 0.00 3.46
2763 4260 2.461637 CCCCTTCCTCCCCCTTCT 59.538 66.667 0.00 0.00 0.00 2.85
2764 4261 1.694525 CCCCTTCCTCCCCCTTCTC 60.695 68.421 0.00 0.00 0.00 2.87
2765 4262 1.694525 CCCTTCCTCCCCCTTCTCC 60.695 68.421 0.00 0.00 0.00 3.71
2766 4263 1.082954 CCTTCCTCCCCCTTCTCCA 59.917 63.158 0.00 0.00 0.00 3.86
2767 4264 0.550147 CCTTCCTCCCCCTTCTCCAA 60.550 60.000 0.00 0.00 0.00 3.53
2768 4265 1.601248 CTTCCTCCCCCTTCTCCAAT 58.399 55.000 0.00 0.00 0.00 3.16
2769 4266 2.632360 CCTTCCTCCCCCTTCTCCAATA 60.632 54.545 0.00 0.00 0.00 1.90
2771 4268 1.657162 TCCTCCCCCTTCTCCAATACT 59.343 52.381 0.00 0.00 0.00 2.12
2772 4269 2.869689 TCCTCCCCCTTCTCCAATACTA 59.130 50.000 0.00 0.00 0.00 1.82
2775 4272 4.665483 CCTCCCCCTTCTCCAATACTAATT 59.335 45.833 0.00 0.00 0.00 1.40
2776 4273 5.850028 CCTCCCCCTTCTCCAATACTAATTA 59.150 44.000 0.00 0.00 0.00 1.40
2777 4274 6.013293 CCTCCCCCTTCTCCAATACTAATTAG 60.013 46.154 11.05 11.05 0.00 1.73
2778 4275 5.309806 TCCCCCTTCTCCAATACTAATTAGC 59.690 44.000 12.54 0.00 0.00 3.09
2779 4276 5.515008 CCCCCTTCTCCAATACTAATTAGCC 60.515 48.000 12.54 0.00 0.00 3.93
2780 4277 5.073144 CCCCTTCTCCAATACTAATTAGCCA 59.927 44.000 12.54 1.18 0.00 4.75
2781 4278 5.998363 CCCTTCTCCAATACTAATTAGCCAC 59.002 44.000 12.54 0.00 0.00 5.01
2782 4279 5.696724 CCTTCTCCAATACTAATTAGCCACG 59.303 44.000 12.54 0.00 0.00 4.94
2783 4280 5.864418 TCTCCAATACTAATTAGCCACGT 57.136 39.130 12.54 0.00 0.00 4.49
2784 4281 6.229936 TCTCCAATACTAATTAGCCACGTT 57.770 37.500 12.54 0.00 0.00 3.99
2785 4282 6.046593 TCTCCAATACTAATTAGCCACGTTG 58.953 40.000 12.54 9.72 0.00 4.10
2786 4283 4.573201 TCCAATACTAATTAGCCACGTTGC 59.427 41.667 12.54 2.86 0.00 4.17
2789 4286 3.053831 ACTAATTAGCCACGTTGCACT 57.946 42.857 14.67 0.00 0.00 4.40
2790 4287 3.408634 ACTAATTAGCCACGTTGCACTT 58.591 40.909 14.67 6.50 0.00 3.16
2791 4288 3.818773 ACTAATTAGCCACGTTGCACTTT 59.181 39.130 14.67 6.33 0.00 2.66
2792 4289 4.998672 ACTAATTAGCCACGTTGCACTTTA 59.001 37.500 14.67 7.09 0.00 1.85
2793 4290 3.824414 ATTAGCCACGTTGCACTTTAC 57.176 42.857 14.67 0.00 0.00 2.01
2794 4291 1.141645 TAGCCACGTTGCACTTTACG 58.858 50.000 14.67 7.09 43.08 3.18
2802 4299 4.899579 CGTTGCACTTTACGTAAAACAC 57.100 40.909 20.47 12.90 33.33 3.32
2928 4435 6.642950 GCATGGATCTCAGTATTGTAGTGTAC 59.357 42.308 0.00 0.00 0.00 2.90
2956 4463 5.194537 AGGGTTTCATGGAGAATTGAGGTAT 59.805 40.000 0.00 0.00 35.83 2.73
2958 4465 7.074237 AGGGTTTCATGGAGAATTGAGGTATAT 59.926 37.037 0.00 0.00 35.83 0.86
3026 4817 5.270794 AGGTAGGGAGACGACTAATTTCTT 58.729 41.667 0.00 0.00 0.00 2.52
3027 4818 5.720520 AGGTAGGGAGACGACTAATTTCTTT 59.279 40.000 0.00 0.00 0.00 2.52
3029 4820 6.534436 GGTAGGGAGACGACTAATTTCTTTTC 59.466 42.308 0.00 0.00 0.00 2.29
3030 4821 5.169295 AGGGAGACGACTAATTTCTTTTCG 58.831 41.667 0.00 0.00 35.80 3.46
3091 4888 2.298411 ACAGTGGTTCAACGTAACGT 57.702 45.000 0.00 0.00 43.97 3.99
3092 4889 3.435105 ACAGTGGTTCAACGTAACGTA 57.565 42.857 0.00 0.00 39.99 3.57
3093 4890 3.981211 ACAGTGGTTCAACGTAACGTAT 58.019 40.909 0.00 0.00 39.99 3.06
3094 4891 5.119931 ACAGTGGTTCAACGTAACGTATA 57.880 39.130 0.00 0.00 39.99 1.47
3095 4892 5.713025 ACAGTGGTTCAACGTAACGTATAT 58.287 37.500 0.00 0.00 39.99 0.86
3096 4893 6.851609 ACAGTGGTTCAACGTAACGTATATA 58.148 36.000 0.00 0.00 39.99 0.86
3097 4894 7.483307 ACAGTGGTTCAACGTAACGTATATAT 58.517 34.615 0.00 0.00 39.99 0.86
3099 4896 7.113965 CAGTGGTTCAACGTAACGTATATATCC 59.886 40.741 0.00 0.00 39.99 2.59
3100 4897 7.013655 AGTGGTTCAACGTAACGTATATATCCT 59.986 37.037 0.00 0.00 39.99 3.24
3102 4899 6.521133 GGTTCAACGTAACGTATATATCCTCG 59.479 42.308 0.00 0.00 39.99 4.63
3103 4900 7.290842 GTTCAACGTAACGTATATATCCTCGA 58.709 38.462 10.38 0.00 39.99 4.04
3104 4901 6.821482 TCAACGTAACGTATATATCCTCGAC 58.179 40.000 10.38 0.00 39.99 4.20
3109 4906 5.527511 AACGTATATATCCTCGACAGTCG 57.472 43.478 17.33 17.33 42.10 4.18
3173 4971 9.862585 ATGCGAATTTTCTTTTAAAATGTTGAC 57.137 25.926 0.09 0.00 30.94 3.18
3290 5088 3.430929 GCAGTCGTGGATAAAGAGATGGT 60.431 47.826 0.00 0.00 0.00 3.55
3291 5089 4.363999 CAGTCGTGGATAAAGAGATGGTC 58.636 47.826 0.00 0.00 0.00 4.02
3292 5090 4.098654 CAGTCGTGGATAAAGAGATGGTCT 59.901 45.833 0.00 0.00 36.94 3.85
3294 5092 5.044558 GTCGTGGATAAAGAGATGGTCTTC 58.955 45.833 0.00 0.00 45.44 2.87
3295 5093 4.045104 CGTGGATAAAGAGATGGTCTTCG 58.955 47.826 0.00 0.00 45.44 3.79
3296 5094 4.372656 GTGGATAAAGAGATGGTCTTCGG 58.627 47.826 0.00 0.00 45.44 4.30
3297 5095 4.099573 GTGGATAAAGAGATGGTCTTCGGA 59.900 45.833 0.00 0.00 45.44 4.55
3298 5096 4.099573 TGGATAAAGAGATGGTCTTCGGAC 59.900 45.833 0.00 0.00 45.44 4.79
3324 5122 3.426787 TTTTTGGGCGATTCTACCAGA 57.573 42.857 0.00 0.00 35.37 3.86
3325 5123 3.644966 TTTTGGGCGATTCTACCAGAT 57.355 42.857 0.00 0.00 35.37 2.90
3326 5124 3.644966 TTTGGGCGATTCTACCAGATT 57.355 42.857 0.00 0.00 35.37 2.40
3327 5125 2.910688 TGGGCGATTCTACCAGATTC 57.089 50.000 0.00 0.00 0.00 2.52
3328 5126 1.068588 TGGGCGATTCTACCAGATTCG 59.931 52.381 13.37 13.37 45.54 3.34
3331 5129 1.784525 CGATTCTACCAGATTCGCCC 58.215 55.000 7.33 0.00 39.94 6.13
3332 5130 1.605712 CGATTCTACCAGATTCGCCCC 60.606 57.143 7.33 0.00 39.94 5.80
3333 5131 0.765510 ATTCTACCAGATTCGCCCCC 59.234 55.000 0.00 0.00 0.00 5.40
3347 5145 3.093172 CCCCCTCCCCAGCTTCTC 61.093 72.222 0.00 0.00 0.00 2.87
3348 5146 3.093172 CCCCTCCCCAGCTTCTCC 61.093 72.222 0.00 0.00 0.00 3.71
3349 5147 3.093172 CCCTCCCCAGCTTCTCCC 61.093 72.222 0.00 0.00 0.00 4.30
3350 5148 2.285668 CCTCCCCAGCTTCTCCCA 60.286 66.667 0.00 0.00 0.00 4.37
3351 5149 2.373707 CCTCCCCAGCTTCTCCCAG 61.374 68.421 0.00 0.00 0.00 4.45
3352 5150 1.306482 CTCCCCAGCTTCTCCCAGA 60.306 63.158 0.00 0.00 0.00 3.86
3353 5151 0.911525 CTCCCCAGCTTCTCCCAGAA 60.912 60.000 0.00 0.00 32.50 3.02
3354 5152 0.253347 TCCCCAGCTTCTCCCAGAAT 60.253 55.000 0.00 0.00 33.13 2.40
3355 5153 0.182299 CCCCAGCTTCTCCCAGAATC 59.818 60.000 0.00 0.00 33.13 2.52
3356 5154 0.914644 CCCAGCTTCTCCCAGAATCA 59.085 55.000 0.00 0.00 33.13 2.57
3357 5155 1.407989 CCCAGCTTCTCCCAGAATCAC 60.408 57.143 0.00 0.00 33.13 3.06
3358 5156 1.407989 CCAGCTTCTCCCAGAATCACC 60.408 57.143 0.00 0.00 33.13 4.02
3359 5157 1.280133 CAGCTTCTCCCAGAATCACCA 59.720 52.381 0.00 0.00 33.13 4.17
3360 5158 1.280421 AGCTTCTCCCAGAATCACCAC 59.720 52.381 0.00 0.00 33.13 4.16
3361 5159 1.280421 GCTTCTCCCAGAATCACCACT 59.720 52.381 0.00 0.00 33.13 4.00
3362 5160 2.679349 GCTTCTCCCAGAATCACCACTC 60.679 54.545 0.00 0.00 33.13 3.51
3363 5161 1.573108 TCTCCCAGAATCACCACTCC 58.427 55.000 0.00 0.00 0.00 3.85
3364 5162 1.203300 TCTCCCAGAATCACCACTCCA 60.203 52.381 0.00 0.00 0.00 3.86
3365 5163 1.842562 CTCCCAGAATCACCACTCCAT 59.157 52.381 0.00 0.00 0.00 3.41
3366 5164 3.041211 CTCCCAGAATCACCACTCCATA 58.959 50.000 0.00 0.00 0.00 2.74
3367 5165 3.649981 CTCCCAGAATCACCACTCCATAT 59.350 47.826 0.00 0.00 0.00 1.78
3368 5166 3.392285 TCCCAGAATCACCACTCCATATG 59.608 47.826 0.00 0.00 0.00 1.78
3369 5167 3.137176 CCCAGAATCACCACTCCATATGT 59.863 47.826 1.24 0.00 0.00 2.29
3370 5168 4.385643 CCCAGAATCACCACTCCATATGTT 60.386 45.833 1.24 0.00 0.00 2.71
3371 5169 5.195940 CCAGAATCACCACTCCATATGTTT 58.804 41.667 1.24 0.00 0.00 2.83
3372 5170 5.653769 CCAGAATCACCACTCCATATGTTTT 59.346 40.000 1.24 0.00 0.00 2.43
3373 5171 6.153340 CCAGAATCACCACTCCATATGTTTTT 59.847 38.462 1.24 0.00 0.00 1.94
3450 5248 8.294341 TGTAGTGACGATTTTAGAAGAAGTTG 57.706 34.615 0.00 0.00 0.00 3.16
3451 5249 6.787085 AGTGACGATTTTAGAAGAAGTTGG 57.213 37.500 0.00 0.00 0.00 3.77
3452 5250 5.701290 AGTGACGATTTTAGAAGAAGTTGGG 59.299 40.000 0.00 0.00 0.00 4.12
3453 5251 5.001232 TGACGATTTTAGAAGAAGTTGGGG 58.999 41.667 0.00 0.00 0.00 4.96
3454 5252 5.221762 TGACGATTTTAGAAGAAGTTGGGGA 60.222 40.000 0.00 0.00 0.00 4.81
3455 5253 5.246307 ACGATTTTAGAAGAAGTTGGGGAG 58.754 41.667 0.00 0.00 0.00 4.30
3456 5254 4.636206 CGATTTTAGAAGAAGTTGGGGAGG 59.364 45.833 0.00 0.00 0.00 4.30
3457 5255 4.382386 TTTTAGAAGAAGTTGGGGAGGG 57.618 45.455 0.00 0.00 0.00 4.30
3458 5256 3.285290 TTAGAAGAAGTTGGGGAGGGA 57.715 47.619 0.00 0.00 0.00 4.20
3459 5257 1.662686 AGAAGAAGTTGGGGAGGGAG 58.337 55.000 0.00 0.00 0.00 4.30
3460 5258 0.621082 GAAGAAGTTGGGGAGGGAGG 59.379 60.000 0.00 0.00 0.00 4.30
3461 5259 1.501654 AAGAAGTTGGGGAGGGAGGC 61.502 60.000 0.00 0.00 0.00 4.70
3462 5260 3.330720 AAGTTGGGGAGGGAGGCG 61.331 66.667 0.00 0.00 0.00 5.52
3463 5261 3.864983 AAGTTGGGGAGGGAGGCGA 62.865 63.158 0.00 0.00 0.00 5.54
3464 5262 3.090532 GTTGGGGAGGGAGGCGAT 61.091 66.667 0.00 0.00 0.00 4.58
3465 5263 2.286121 TTGGGGAGGGAGGCGATT 60.286 61.111 0.00 0.00 0.00 3.34
3466 5264 1.928567 TTGGGGAGGGAGGCGATTT 60.929 57.895 0.00 0.00 0.00 2.17
3467 5265 1.506028 TTGGGGAGGGAGGCGATTTT 61.506 55.000 0.00 0.00 0.00 1.82
3468 5266 1.453928 GGGGAGGGAGGCGATTTTG 60.454 63.158 0.00 0.00 0.00 2.44
3469 5267 1.607612 GGGAGGGAGGCGATTTTGA 59.392 57.895 0.00 0.00 0.00 2.69
3470 5268 0.464554 GGGAGGGAGGCGATTTTGAG 60.465 60.000 0.00 0.00 0.00 3.02
3471 5269 0.541863 GGAGGGAGGCGATTTTGAGA 59.458 55.000 0.00 0.00 0.00 3.27
3472 5270 1.474143 GGAGGGAGGCGATTTTGAGAG 60.474 57.143 0.00 0.00 0.00 3.20
3473 5271 1.482593 GAGGGAGGCGATTTTGAGAGA 59.517 52.381 0.00 0.00 0.00 3.10
3474 5272 1.909302 AGGGAGGCGATTTTGAGAGAA 59.091 47.619 0.00 0.00 0.00 2.87
3475 5273 2.507471 AGGGAGGCGATTTTGAGAGAAT 59.493 45.455 0.00 0.00 0.00 2.40
3476 5274 2.875317 GGGAGGCGATTTTGAGAGAATC 59.125 50.000 0.00 0.00 0.00 2.52
3480 5278 2.635141 CGATTTTGAGAGAATCGCCG 57.365 50.000 6.34 0.00 46.06 6.46
3481 5279 2.193447 CGATTTTGAGAGAATCGCCGA 58.807 47.619 6.34 0.00 46.06 5.54
3482 5280 2.603110 CGATTTTGAGAGAATCGCCGAA 59.397 45.455 6.34 0.00 46.06 4.30
3483 5281 3.062099 CGATTTTGAGAGAATCGCCGAAA 59.938 43.478 6.34 0.00 46.06 3.46
3484 5282 4.435518 CGATTTTGAGAGAATCGCCGAAAA 60.436 41.667 6.34 0.00 46.06 2.29
3485 5283 4.404507 TTTTGAGAGAATCGCCGAAAAG 57.595 40.909 0.00 0.00 42.67 2.27
3486 5284 3.313012 TTGAGAGAATCGCCGAAAAGA 57.687 42.857 0.00 0.00 42.67 2.52
3487 5285 3.313012 TGAGAGAATCGCCGAAAAGAA 57.687 42.857 0.00 0.00 42.67 2.52
3488 5286 2.993899 TGAGAGAATCGCCGAAAAGAAC 59.006 45.455 0.00 0.00 42.67 3.01
3489 5287 3.254892 GAGAGAATCGCCGAAAAGAACT 58.745 45.455 0.00 0.00 42.67 3.01
3490 5288 2.996621 AGAGAATCGCCGAAAAGAACTG 59.003 45.455 0.00 0.00 42.67 3.16
3491 5289 2.076863 AGAATCGCCGAAAAGAACTGG 58.923 47.619 0.00 0.00 0.00 4.00
3492 5290 0.521735 AATCGCCGAAAAGAACTGGC 59.478 50.000 0.00 0.00 44.09 4.85
3498 5296 1.000274 CCGAAAAGAACTGGCCCTTTG 60.000 52.381 0.00 0.00 33.37 2.77
3516 5314 1.810030 GTGGCGGCTACGGAAGAAG 60.810 63.158 11.43 0.00 41.36 2.85
3517 5315 2.890961 GGCGGCTACGGAAGAAGC 60.891 66.667 0.00 0.00 41.36 3.86
3566 5364 6.096695 GTCTTTGTCACTAGCCAAAACAAAA 58.903 36.000 0.00 0.00 38.81 2.44
3605 5403 1.114627 CTCCGACCTGACCATCATGA 58.885 55.000 0.00 0.00 0.00 3.07
3611 5409 0.462581 CCTGACCATCATGACCACCG 60.463 60.000 0.00 0.00 0.00 4.94
3612 5410 1.078497 TGACCATCATGACCACCGC 60.078 57.895 0.00 0.00 0.00 5.68
3613 5411 2.125147 ACCATCATGACCACCGCG 60.125 61.111 0.00 0.00 0.00 6.46
3614 5412 2.896854 CCATCATGACCACCGCGG 60.897 66.667 26.86 26.86 42.50 6.46
3615 5413 3.576356 CATCATGACCACCGCGGC 61.576 66.667 28.58 9.70 39.03 6.53
3616 5414 4.856801 ATCATGACCACCGCGGCC 62.857 66.667 28.58 12.87 39.03 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.827568 TCGACACTTTACGAAATAACCAC 57.172 39.130 0.00 0.00 35.62 4.16
1 2 5.177327 GGTTCGACACTTTACGAAATAACCA 59.823 40.000 0.00 0.00 46.98 3.67
2 3 5.389830 GGGTTCGACACTTTACGAAATAACC 60.390 44.000 0.00 0.00 46.98 2.85
4 5 5.177327 GTGGGTTCGACACTTTACGAAATAA 59.823 40.000 0.00 0.00 46.98 1.40
5 6 4.685628 GTGGGTTCGACACTTTACGAAATA 59.314 41.667 0.00 0.00 46.98 1.40
7 8 2.865551 GTGGGTTCGACACTTTACGAAA 59.134 45.455 0.00 0.00 46.98 3.46
8 9 2.159128 TGTGGGTTCGACACTTTACGAA 60.159 45.455 6.26 0.00 44.26 3.85
9 10 1.408340 TGTGGGTTCGACACTTTACGA 59.592 47.619 6.26 0.00 39.52 3.43
10 11 1.790623 CTGTGGGTTCGACACTTTACG 59.209 52.381 6.26 0.00 39.52 3.18
11 12 2.140717 CCTGTGGGTTCGACACTTTAC 58.859 52.381 6.26 0.00 39.52 2.01
13 14 0.834612 TCCTGTGGGTTCGACACTTT 59.165 50.000 6.26 0.00 39.52 2.66
14 15 0.834612 TTCCTGTGGGTTCGACACTT 59.165 50.000 6.26 0.00 39.52 3.16
15 16 0.834612 TTTCCTGTGGGTTCGACACT 59.165 50.000 6.26 0.00 39.52 3.55
16 17 0.942252 GTTTCCTGTGGGTTCGACAC 59.058 55.000 0.00 0.00 39.26 3.67
17 18 0.531090 CGTTTCCTGTGGGTTCGACA 60.531 55.000 0.00 0.00 0.00 4.35
18 19 0.249573 TCGTTTCCTGTGGGTTCGAC 60.250 55.000 0.00 0.00 0.00 4.20
19 20 0.464870 TTCGTTTCCTGTGGGTTCGA 59.535 50.000 0.00 0.00 0.00 3.71
20 21 1.301423 TTTCGTTTCCTGTGGGTTCG 58.699 50.000 0.00 0.00 0.00 3.95
21 22 2.946990 TCTTTTCGTTTCCTGTGGGTTC 59.053 45.455 0.00 0.00 0.00 3.62
22 23 3.007473 TCTTTTCGTTTCCTGTGGGTT 57.993 42.857 0.00 0.00 0.00 4.11
23 24 2.721425 TCTTTTCGTTTCCTGTGGGT 57.279 45.000 0.00 0.00 0.00 4.51
24 25 3.568007 TCATTCTTTTCGTTTCCTGTGGG 59.432 43.478 0.00 0.00 0.00 4.61
25 26 4.036262 TGTCATTCTTTTCGTTTCCTGTGG 59.964 41.667 0.00 0.00 0.00 4.17
26 27 5.168526 TGTCATTCTTTTCGTTTCCTGTG 57.831 39.130 0.00 0.00 0.00 3.66
27 28 6.391227 AATGTCATTCTTTTCGTTTCCTGT 57.609 33.333 0.00 0.00 0.00 4.00
28 29 8.236586 TGATAATGTCATTCTTTTCGTTTCCTG 58.763 33.333 0.07 0.00 0.00 3.86
29 30 8.335532 TGATAATGTCATTCTTTTCGTTTCCT 57.664 30.769 0.07 0.00 0.00 3.36
30 31 8.850452 GTTGATAATGTCATTCTTTTCGTTTCC 58.150 33.333 0.07 0.00 36.54 3.13
31 32 8.850452 GGTTGATAATGTCATTCTTTTCGTTTC 58.150 33.333 0.07 0.00 36.54 2.78
32 33 7.812669 GGGTTGATAATGTCATTCTTTTCGTTT 59.187 33.333 0.07 0.00 36.54 3.60
33 34 7.312899 GGGTTGATAATGTCATTCTTTTCGTT 58.687 34.615 0.07 0.00 36.54 3.85
34 35 6.127730 GGGGTTGATAATGTCATTCTTTTCGT 60.128 38.462 0.07 0.00 36.54 3.85
35 36 6.265577 GGGGTTGATAATGTCATTCTTTTCG 58.734 40.000 0.07 0.00 36.54 3.46
36 37 6.127730 ACGGGGTTGATAATGTCATTCTTTTC 60.128 38.462 0.07 0.00 36.54 2.29
37 38 5.714806 ACGGGGTTGATAATGTCATTCTTTT 59.285 36.000 0.07 0.00 36.54 2.27
38 39 5.261216 ACGGGGTTGATAATGTCATTCTTT 58.739 37.500 0.07 0.00 36.54 2.52
39 40 4.855340 ACGGGGTTGATAATGTCATTCTT 58.145 39.130 0.07 0.00 36.54 2.52
40 41 4.503714 ACGGGGTTGATAATGTCATTCT 57.496 40.909 0.07 0.00 36.54 2.40
41 42 5.820947 AGTTACGGGGTTGATAATGTCATTC 59.179 40.000 0.07 0.00 36.54 2.67
42 43 5.751586 AGTTACGGGGTTGATAATGTCATT 58.248 37.500 3.06 3.06 36.54 2.57
43 44 5.367945 AGTTACGGGGTTGATAATGTCAT 57.632 39.130 0.00 0.00 36.54 3.06
44 45 4.829872 AGTTACGGGGTTGATAATGTCA 57.170 40.909 0.00 0.00 34.25 3.58
45 46 6.285990 ACATAGTTACGGGGTTGATAATGTC 58.714 40.000 0.00 0.00 0.00 3.06
46 47 6.243216 ACATAGTTACGGGGTTGATAATGT 57.757 37.500 0.00 0.00 0.00 2.71
47 48 8.842358 ATAACATAGTTACGGGGTTGATAATG 57.158 34.615 0.00 0.00 0.00 1.90
48 49 8.653191 TGATAACATAGTTACGGGGTTGATAAT 58.347 33.333 0.00 0.00 0.00 1.28
49 50 7.927629 GTGATAACATAGTTACGGGGTTGATAA 59.072 37.037 0.00 0.00 0.00 1.75
50 51 7.436118 GTGATAACATAGTTACGGGGTTGATA 58.564 38.462 0.00 0.00 0.00 2.15
51 52 6.285990 GTGATAACATAGTTACGGGGTTGAT 58.714 40.000 0.00 0.00 0.00 2.57
52 53 5.395546 GGTGATAACATAGTTACGGGGTTGA 60.396 44.000 0.00 0.00 0.00 3.18
53 54 4.812626 GGTGATAACATAGTTACGGGGTTG 59.187 45.833 0.00 0.00 0.00 3.77
54 55 4.718276 AGGTGATAACATAGTTACGGGGTT 59.282 41.667 0.00 0.00 0.00 4.11
55 56 4.292643 AGGTGATAACATAGTTACGGGGT 58.707 43.478 0.00 0.00 0.00 4.95
56 57 4.950205 AGGTGATAACATAGTTACGGGG 57.050 45.455 0.00 0.00 0.00 5.73
57 58 5.867716 GCATAGGTGATAACATAGTTACGGG 59.132 44.000 0.00 0.00 0.00 5.28
58 59 6.452242 TGCATAGGTGATAACATAGTTACGG 58.548 40.000 0.00 0.00 0.00 4.02
59 60 7.145985 ACTGCATAGGTGATAACATAGTTACG 58.854 38.462 0.00 0.00 0.00 3.18
60 61 8.888579 AACTGCATAGGTGATAACATAGTTAC 57.111 34.615 0.00 0.00 0.00 2.50
61 62 9.325198 CAAACTGCATAGGTGATAACATAGTTA 57.675 33.333 0.00 0.00 0.00 2.24
62 63 7.829211 ACAAACTGCATAGGTGATAACATAGTT 59.171 33.333 0.00 0.00 0.00 2.24
63 64 7.338710 ACAAACTGCATAGGTGATAACATAGT 58.661 34.615 0.00 0.00 0.00 2.12
64 65 7.792374 ACAAACTGCATAGGTGATAACATAG 57.208 36.000 0.00 0.00 0.00 2.23
65 66 9.271828 CATACAAACTGCATAGGTGATAACATA 57.728 33.333 0.00 0.00 0.00 2.29
66 67 7.255242 GCATACAAACTGCATAGGTGATAACAT 60.255 37.037 0.00 0.00 39.46 2.71
67 68 6.038161 GCATACAAACTGCATAGGTGATAACA 59.962 38.462 0.00 0.00 39.46 2.41
68 69 6.038161 TGCATACAAACTGCATAGGTGATAAC 59.962 38.462 0.00 0.00 44.30 1.89
69 70 6.118852 TGCATACAAACTGCATAGGTGATAA 58.881 36.000 0.00 0.00 44.30 1.75
70 71 5.679601 TGCATACAAACTGCATAGGTGATA 58.320 37.500 0.00 0.00 44.30 2.15
71 72 4.525996 TGCATACAAACTGCATAGGTGAT 58.474 39.130 0.00 0.00 44.30 3.06
72 73 3.949132 TGCATACAAACTGCATAGGTGA 58.051 40.909 0.00 0.00 44.30 4.02
79 80 1.697284 TTGGGTGCATACAAACTGCA 58.303 45.000 3.85 0.00 46.82 4.41
80 81 2.810439 TTTGGGTGCATACAAACTGC 57.190 45.000 12.86 0.00 40.10 4.40
81 82 4.704540 TCCTATTTGGGTGCATACAAACTG 59.295 41.667 17.44 13.44 39.15 3.16
82 83 4.929479 TCCTATTTGGGTGCATACAAACT 58.071 39.130 17.44 11.15 39.15 2.66
83 84 4.705023 ACTCCTATTTGGGTGCATACAAAC 59.295 41.667 17.44 0.00 39.15 2.93
84 85 4.929479 ACTCCTATTTGGGTGCATACAAA 58.071 39.130 17.41 17.41 40.44 2.83
85 86 4.584638 ACTCCTATTTGGGTGCATACAA 57.415 40.909 0.00 0.00 36.20 2.41
86 87 4.018870 TGAACTCCTATTTGGGTGCATACA 60.019 41.667 0.00 0.00 36.20 2.29
87 88 4.523083 TGAACTCCTATTTGGGTGCATAC 58.477 43.478 0.00 0.00 36.20 2.39
88 89 4.853468 TGAACTCCTATTTGGGTGCATA 57.147 40.909 0.00 0.00 36.20 3.14
89 90 3.737559 TGAACTCCTATTTGGGTGCAT 57.262 42.857 0.00 0.00 36.20 3.96
90 91 3.517296 TTGAACTCCTATTTGGGTGCA 57.483 42.857 0.00 0.00 36.20 4.57
91 92 4.864704 TTTTGAACTCCTATTTGGGTGC 57.135 40.909 0.00 0.00 36.20 5.01
92 93 6.165577 CCATTTTTGAACTCCTATTTGGGTG 58.834 40.000 0.00 0.00 36.20 4.61
93 94 5.843969 ACCATTTTTGAACTCCTATTTGGGT 59.156 36.000 0.00 0.00 36.20 4.51
94 95 6.358974 ACCATTTTTGAACTCCTATTTGGG 57.641 37.500 0.00 0.00 36.20 4.12
95 96 6.014669 TGGACCATTTTTGAACTCCTATTTGG 60.015 38.462 0.00 0.00 37.10 3.28
96 97 6.868339 GTGGACCATTTTTGAACTCCTATTTG 59.132 38.462 0.00 0.00 0.00 2.32
97 98 6.782494 AGTGGACCATTTTTGAACTCCTATTT 59.218 34.615 0.00 0.00 0.00 1.40
98 99 6.314917 AGTGGACCATTTTTGAACTCCTATT 58.685 36.000 0.00 0.00 0.00 1.73
99 100 5.892348 AGTGGACCATTTTTGAACTCCTAT 58.108 37.500 0.00 0.00 0.00 2.57
100 101 5.313712 GAGTGGACCATTTTTGAACTCCTA 58.686 41.667 0.00 0.00 0.00 2.94
101 102 4.145052 GAGTGGACCATTTTTGAACTCCT 58.855 43.478 0.00 0.00 0.00 3.69
102 103 3.255888 GGAGTGGACCATTTTTGAACTCC 59.744 47.826 0.00 2.39 43.80 3.85
103 104 3.888930 TGGAGTGGACCATTTTTGAACTC 59.111 43.478 0.00 0.00 34.77 3.01
104 105 3.909732 TGGAGTGGACCATTTTTGAACT 58.090 40.909 0.00 0.00 34.77 3.01
105 106 4.871933 ATGGAGTGGACCATTTTTGAAC 57.128 40.909 0.00 0.00 47.00 3.18
114 115 1.676968 CAACCGATGGAGTGGACCA 59.323 57.895 0.00 0.00 44.41 4.02
115 116 1.745489 GCAACCGATGGAGTGGACC 60.745 63.158 0.00 0.00 0.00 4.46
116 117 0.535335 TAGCAACCGATGGAGTGGAC 59.465 55.000 0.00 0.00 0.00 4.02
117 118 0.535335 GTAGCAACCGATGGAGTGGA 59.465 55.000 0.00 0.00 0.00 4.02
118 119 0.462047 GGTAGCAACCGATGGAGTGG 60.462 60.000 0.00 0.00 35.62 4.00
119 120 3.065575 GGTAGCAACCGATGGAGTG 57.934 57.895 0.00 0.00 35.62 3.51
128 129 6.093633 ACTGATTTATCTTTTCGGTAGCAACC 59.906 38.462 0.00 0.00 42.95 3.77
129 130 7.073342 ACTGATTTATCTTTTCGGTAGCAAC 57.927 36.000 0.00 0.00 0.00 4.17
130 131 7.681939 AACTGATTTATCTTTTCGGTAGCAA 57.318 32.000 0.00 0.00 0.00 3.91
131 132 7.681939 AAACTGATTTATCTTTTCGGTAGCA 57.318 32.000 0.00 0.00 0.00 3.49
132 133 9.486857 GTAAAACTGATTTATCTTTTCGGTAGC 57.513 33.333 0.00 0.00 35.98 3.58
160 161 9.647797 CTGTTTTTACCTTTTCTTTGGTAGTTT 57.352 29.630 0.00 0.00 39.61 2.66
161 162 8.255206 CCTGTTTTTACCTTTTCTTTGGTAGTT 58.745 33.333 0.00 0.00 39.61 2.24
162 163 7.616542 TCCTGTTTTTACCTTTTCTTTGGTAGT 59.383 33.333 0.00 0.00 39.61 2.73
163 164 8.002984 TCCTGTTTTTACCTTTTCTTTGGTAG 57.997 34.615 0.00 0.00 39.61 3.18
164 165 7.957992 TCCTGTTTTTACCTTTTCTTTGGTA 57.042 32.000 0.00 0.00 37.74 3.25
165 166 6.860790 TCCTGTTTTTACCTTTTCTTTGGT 57.139 33.333 0.00 0.00 40.12 3.67
166 167 8.731275 ATTTCCTGTTTTTACCTTTTCTTTGG 57.269 30.769 0.00 0.00 0.00 3.28
173 174 9.826574 GTCCTTTTATTTCCTGTTTTTACCTTT 57.173 29.630 0.00 0.00 0.00 3.11
174 175 8.983789 TGTCCTTTTATTTCCTGTTTTTACCTT 58.016 29.630 0.00 0.00 0.00 3.50
175 176 8.541899 TGTCCTTTTATTTCCTGTTTTTACCT 57.458 30.769 0.00 0.00 0.00 3.08
176 177 9.602568 TTTGTCCTTTTATTTCCTGTTTTTACC 57.397 29.630 0.00 0.00 0.00 2.85
179 180 9.733556 AGTTTTGTCCTTTTATTTCCTGTTTTT 57.266 25.926 0.00 0.00 0.00 1.94
189 190 9.435688 GCCATCATTTAGTTTTGTCCTTTTATT 57.564 29.630 0.00 0.00 0.00 1.40
190 191 8.815912 AGCCATCATTTAGTTTTGTCCTTTTAT 58.184 29.630 0.00 0.00 0.00 1.40
191 192 8.087750 CAGCCATCATTTAGTTTTGTCCTTTTA 58.912 33.333 0.00 0.00 0.00 1.52
192 193 6.930722 CAGCCATCATTTAGTTTTGTCCTTTT 59.069 34.615 0.00 0.00 0.00 2.27
193 194 6.267471 TCAGCCATCATTTAGTTTTGTCCTTT 59.733 34.615 0.00 0.00 0.00 3.11
194 195 5.774690 TCAGCCATCATTTAGTTTTGTCCTT 59.225 36.000 0.00 0.00 0.00 3.36
195 196 5.324409 TCAGCCATCATTTAGTTTTGTCCT 58.676 37.500 0.00 0.00 0.00 3.85
196 197 5.183904 ACTCAGCCATCATTTAGTTTTGTCC 59.816 40.000 0.00 0.00 0.00 4.02
197 198 6.259550 ACTCAGCCATCATTTAGTTTTGTC 57.740 37.500 0.00 0.00 0.00 3.18
198 199 6.655078 AACTCAGCCATCATTTAGTTTTGT 57.345 33.333 0.00 0.00 0.00 2.83
199 200 7.147312 TCAAACTCAGCCATCATTTAGTTTTG 58.853 34.615 0.00 0.00 35.57 2.44
200 201 7.014615 ACTCAAACTCAGCCATCATTTAGTTTT 59.985 33.333 0.00 0.00 35.57 2.43
212 213 4.202182 ACGTTTACTACTCAAACTCAGCCA 60.202 41.667 0.00 0.00 34.43 4.75
216 217 7.035840 AGAGAACGTTTACTACTCAAACTCA 57.964 36.000 14.24 0.00 34.43 3.41
235 236 5.023452 TCATTACTCTGCAACCCTAGAGAA 58.977 41.667 8.13 0.05 42.34 2.87
239 240 5.053145 GTGATCATTACTCTGCAACCCTAG 58.947 45.833 0.00 0.00 0.00 3.02
240 241 4.716784 AGTGATCATTACTCTGCAACCCTA 59.283 41.667 0.00 0.00 0.00 3.53
247 248 4.984785 TCGCATTAGTGATCATTACTCTGC 59.015 41.667 0.00 7.49 35.39 4.26
279 280 0.112995 AACCATGCCTCCACATGTGT 59.887 50.000 23.79 1.62 44.88 3.72
315 316 8.124823 CACTTTTGACATATAACATGTGGCTAG 58.875 37.037 0.00 0.00 29.69 3.42
343 344 2.551459 GCGTATGTGTACTAGGATCGGT 59.449 50.000 0.00 0.00 0.00 4.69
345 346 2.835883 CGCGTATGTGTACTAGGATCG 58.164 52.381 0.00 0.00 0.00 3.69
352 353 2.421073 TCTTGTAGCGCGTATGTGTACT 59.579 45.455 8.43 0.00 0.00 2.73
355 356 1.201647 ACTCTTGTAGCGCGTATGTGT 59.798 47.619 8.43 0.00 0.00 3.72
358 359 4.537965 AGATTACTCTTGTAGCGCGTATG 58.462 43.478 8.43 0.00 0.00 2.39
361 362 3.376234 TGTAGATTACTCTTGTAGCGCGT 59.624 43.478 8.43 0.00 32.66 6.01
373 374 3.306780 GGCGGTGGCATATGTAGATTACT 60.307 47.826 4.29 0.00 42.47 2.24
374 375 3.000727 GGCGGTGGCATATGTAGATTAC 58.999 50.000 4.29 0.00 42.47 1.89
378 379 1.128200 AAGGCGGTGGCATATGTAGA 58.872 50.000 4.29 0.00 42.47 2.59
379 380 2.037251 ACTAAGGCGGTGGCATATGTAG 59.963 50.000 4.29 0.00 42.47 2.74
381 382 0.837272 ACTAAGGCGGTGGCATATGT 59.163 50.000 4.29 0.00 42.47 2.29
383 384 2.729028 AAACTAAGGCGGTGGCATAT 57.271 45.000 0.00 0.00 42.47 1.78
384 385 2.026636 AGAAAACTAAGGCGGTGGCATA 60.027 45.455 0.00 0.00 42.47 3.14
387 388 0.803117 GAGAAAACTAAGGCGGTGGC 59.197 55.000 0.00 0.00 38.90 5.01
388 389 2.076863 CTGAGAAAACTAAGGCGGTGG 58.923 52.381 0.00 0.00 0.00 4.61
391 392 1.087501 GCCTGAGAAAACTAAGGCGG 58.912 55.000 9.50 0.00 45.30 6.13
394 395 3.425162 ACCAGCCTGAGAAAACTAAGG 57.575 47.619 0.00 0.00 0.00 2.69
395 396 5.299279 TGAAAACCAGCCTGAGAAAACTAAG 59.701 40.000 0.00 0.00 0.00 2.18
396 397 5.067283 GTGAAAACCAGCCTGAGAAAACTAA 59.933 40.000 0.00 0.00 0.00 2.24
408 416 2.858745 TCAACCTAGTGAAAACCAGCC 58.141 47.619 0.00 0.00 0.00 4.85
411 419 7.514721 AGACTTAATCAACCTAGTGAAAACCA 58.485 34.615 0.00 0.00 0.00 3.67
435 443 1.515521 GGTTGCGTCTGTGGGGAAAG 61.516 60.000 0.00 0.00 0.00 2.62
441 449 1.238439 AAGAATGGTTGCGTCTGTGG 58.762 50.000 0.00 0.00 0.00 4.17
443 451 2.038557 ACCTAAGAATGGTTGCGTCTGT 59.961 45.455 0.00 0.00 33.34 3.41
444 452 2.699954 ACCTAAGAATGGTTGCGTCTG 58.300 47.619 0.00 0.00 33.34 3.51
450 458 3.306019 GGTGGCAAACCTAAGAATGGTTG 60.306 47.826 0.00 0.00 45.99 3.77
472 480 3.191371 GTCTTTGCAATTGTAGGGGAGTG 59.809 47.826 7.40 0.00 0.00 3.51
483 491 3.701532 TCGGTTTTCGTCTTTGCAATT 57.298 38.095 0.00 0.00 40.32 2.32
484 492 3.314080 TCTTCGGTTTTCGTCTTTGCAAT 59.686 39.130 0.00 0.00 40.32 3.56
485 493 2.678836 TCTTCGGTTTTCGTCTTTGCAA 59.321 40.909 0.00 0.00 40.32 4.08
500 509 6.150396 AGAGGTGACAGTAATATTCTTCGG 57.850 41.667 0.00 0.00 0.00 4.30
501 510 9.021863 GTAAAGAGGTGACAGTAATATTCTTCG 57.978 37.037 0.00 0.00 0.00 3.79
502 511 9.315525 GGTAAAGAGGTGACAGTAATATTCTTC 57.684 37.037 0.00 0.00 0.00 2.87
503 512 9.047947 AGGTAAAGAGGTGACAGTAATATTCTT 57.952 33.333 0.00 0.00 0.00 2.52
513 522 4.058817 GTGTTGAGGTAAAGAGGTGACAG 58.941 47.826 0.00 0.00 0.00 3.51
555 564 7.831193 GCCTAGATTGACCATGGACAATATTAT 59.169 37.037 32.90 23.11 39.68 1.28
559 568 4.411869 TGCCTAGATTGACCATGGACAATA 59.588 41.667 32.90 21.61 39.68 1.90
563 572 3.281727 TTGCCTAGATTGACCATGGAC 57.718 47.619 21.47 13.94 0.00 4.02
588 597 1.277557 AGAGAAGGCTTCACTCGCATT 59.722 47.619 27.70 5.55 36.03 3.56
589 598 0.901124 AGAGAAGGCTTCACTCGCAT 59.099 50.000 27.70 6.32 36.03 4.73
590 599 0.244994 GAGAGAAGGCTTCACTCGCA 59.755 55.000 29.92 0.00 37.58 5.10
604 613 6.753913 ATAGCCTCCATTAATGTTGAGAGA 57.246 37.500 18.17 6.51 0.00 3.10
619 628 4.891992 TTATGTCCAGCTAATAGCCTCC 57.108 45.455 8.88 0.00 43.77 4.30
676 686 3.132289 TGTTTGTCTTCGACCTCTCAACT 59.868 43.478 0.00 0.00 0.00 3.16
687 697 5.522460 TCAACTAGTTTCCTGTTTGTCTTCG 59.478 40.000 5.07 0.00 0.00 3.79
693 703 6.927294 ACTTCTCAACTAGTTTCCTGTTTG 57.073 37.500 5.07 0.00 0.00 2.93
694 704 7.793036 AGTACTTCTCAACTAGTTTCCTGTTT 58.207 34.615 5.07 0.00 0.00 2.83
700 711 7.216973 TCTGGAGTACTTCTCAACTAGTTTC 57.783 40.000 5.07 0.00 44.40 2.78
704 715 7.362574 CCTTCTTCTGGAGTACTTCTCAACTAG 60.363 44.444 2.07 0.00 44.40 2.57
706 717 5.245075 CCTTCTTCTGGAGTACTTCTCAACT 59.755 44.000 2.07 0.00 44.40 3.16
714 725 2.769095 GGATGCCTTCTTCTGGAGTACT 59.231 50.000 0.00 0.00 0.00 2.73
717 728 1.280421 GTGGATGCCTTCTTCTGGAGT 59.720 52.381 0.00 0.00 0.00 3.85
718 729 1.280133 TGTGGATGCCTTCTTCTGGAG 59.720 52.381 0.00 0.00 0.00 3.86
719 730 1.361204 TGTGGATGCCTTCTTCTGGA 58.639 50.000 0.00 0.00 0.00 3.86
720 731 2.431954 ATGTGGATGCCTTCTTCTGG 57.568 50.000 0.00 0.00 0.00 3.86
721 732 5.591472 TCAATTATGTGGATGCCTTCTTCTG 59.409 40.000 0.00 0.00 0.00 3.02
745 756 9.857656 TTCATTTTCAGCCTTCAGATATAGATT 57.142 29.630 0.00 0.00 0.00 2.40
750 762 6.994496 TCGATTCATTTTCAGCCTTCAGATAT 59.006 34.615 0.00 0.00 0.00 1.63
751 763 6.348498 TCGATTCATTTTCAGCCTTCAGATA 58.652 36.000 0.00 0.00 0.00 1.98
768 780 8.801882 AAATAAATTTAGGGTCACTCGATTCA 57.198 30.769 3.94 0.00 0.00 2.57
771 783 8.801882 TGAAAATAAATTTAGGGTCACTCGAT 57.198 30.769 3.94 0.00 0.00 3.59
800 812 2.588027 GCAGAGGCTAGTGGTAAGTC 57.412 55.000 0.00 0.00 36.96 3.01
839 856 4.389890 TGAGTGGTTACTTGTTACGTGT 57.610 40.909 0.00 0.00 37.25 4.49
871 888 5.049474 TCGACTGTTGAGTGAAATGGAAATG 60.049 40.000 0.00 0.00 30.16 2.32
919 936 2.338620 CACTCAAGGCGTCCACGA 59.661 61.111 2.58 0.00 43.02 4.35
955 1177 3.188786 GCTTCTGGCGCCGTACTG 61.189 66.667 23.90 11.78 0.00 2.74
976 1205 2.578495 GTCGAAGAAAGACGAGCGTTA 58.422 47.619 0.00 0.00 39.69 3.18
985 1214 1.671850 GGCCATGTCGTCGAAGAAAGA 60.672 52.381 1.62 0.00 39.69 2.52
986 1215 0.721718 GGCCATGTCGTCGAAGAAAG 59.278 55.000 1.62 0.00 39.69 2.62
987 1216 1.011968 CGGCCATGTCGTCGAAGAAA 61.012 55.000 2.24 0.00 39.69 2.52
988 1217 1.445410 CGGCCATGTCGTCGAAGAA 60.445 57.895 2.24 0.00 39.69 2.52
1024 1259 3.844090 GGCGAGGAGGAGGAGCAC 61.844 72.222 0.00 0.00 0.00 4.40
1050 1285 3.018149 ACGGAGGATGTACAAGAGAGAC 58.982 50.000 0.00 0.00 0.00 3.36
1523 1761 0.320247 GAGCTCACACAGGTCCACAG 60.320 60.000 9.40 0.00 42.98 3.66
1524 1762 1.748403 GAGCTCACACAGGTCCACA 59.252 57.895 9.40 0.00 42.98 4.17
1611 1854 1.813862 CGTTCCTTGTTGCCTTCCTCA 60.814 52.381 0.00 0.00 0.00 3.86
1628 1871 2.262915 CCTTCCTCAGCTCGCGTT 59.737 61.111 5.77 0.00 0.00 4.84
1893 2457 3.120385 CGCATGCCAGCTTCGTCA 61.120 61.111 13.15 0.00 0.00 4.35
1941 2505 7.148440 GGCATAATAAACACGTACTGTACCAAA 60.148 37.037 12.08 0.00 30.51 3.28
1949 2515 2.867975 GGCGGCATAATAAACACGTACT 59.132 45.455 3.07 0.00 0.00 2.73
1950 2516 2.347846 CGGCGGCATAATAAACACGTAC 60.348 50.000 10.53 0.00 0.00 3.67
1951 2517 1.859703 CGGCGGCATAATAAACACGTA 59.140 47.619 10.53 0.00 0.00 3.57
1953 2519 0.653636 ACGGCGGCATAATAAACACG 59.346 50.000 13.24 0.00 0.00 4.49
1966 2542 2.726691 CTAACAACGAGCACGGCGG 61.727 63.158 13.24 0.66 44.46 6.13
2099 3111 0.460987 GGAGCTTACGCATGCTGTCT 60.461 55.000 17.13 8.78 39.91 3.41
2152 3164 2.509336 CCTCGGTGATGACGTGCC 60.509 66.667 0.00 0.00 0.00 5.01
2201 3213 0.108756 GTAGCGTCTCCTTGACCACC 60.109 60.000 0.00 0.00 42.49 4.61
2312 3325 3.799755 GCCCACGCGTTGATGACC 61.800 66.667 10.22 0.00 0.00 4.02
2487 3500 3.869272 CGCCAGCGCCATCTCAAC 61.869 66.667 2.29 0.00 0.00 3.18
2581 3609 2.586792 GCAGGCCGGACTTGAGAT 59.413 61.111 7.41 0.00 0.00 2.75
2582 3610 3.706373 GGCAGGCCGGACTTGAGA 61.706 66.667 7.41 0.00 0.00 3.27
2646 4120 9.751542 CGTAGATGTAGGATTATTGTTCTTCTT 57.248 33.333 0.00 0.00 0.00 2.52
2647 4121 8.915036 ACGTAGATGTAGGATTATTGTTCTTCT 58.085 33.333 0.00 0.00 0.00 2.85
2649 4123 9.962783 GTACGTAGATGTAGGATTATTGTTCTT 57.037 33.333 0.00 0.00 0.00 2.52
2651 4125 9.395707 CTGTACGTAGATGTAGGATTATTGTTC 57.604 37.037 0.00 0.00 0.00 3.18
2655 4129 7.447545 TCTGCTGTACGTAGATGTAGGATTATT 59.552 37.037 0.00 0.00 28.74 1.40
2657 4131 6.204301 GTCTGCTGTACGTAGATGTAGGATTA 59.796 42.308 0.00 0.00 36.72 1.75
2659 4133 4.515944 GTCTGCTGTACGTAGATGTAGGAT 59.484 45.833 0.00 0.00 36.72 3.24
2660 4134 3.875727 GTCTGCTGTACGTAGATGTAGGA 59.124 47.826 0.00 0.00 36.72 2.94
2661 4135 3.303197 CGTCTGCTGTACGTAGATGTAGG 60.303 52.174 0.00 0.00 36.72 3.18
2663 4137 3.524541 TCGTCTGCTGTACGTAGATGTA 58.475 45.455 17.43 8.00 40.83 2.29
2664 4138 2.353323 TCGTCTGCTGTACGTAGATGT 58.647 47.619 17.43 0.00 40.83 3.06
2665 4139 3.063588 TCTTCGTCTGCTGTACGTAGATG 59.936 47.826 14.97 14.25 40.38 2.90
2666 4140 3.063725 GTCTTCGTCTGCTGTACGTAGAT 59.936 47.826 18.74 0.00 44.69 1.98
2667 4141 2.414481 GTCTTCGTCTGCTGTACGTAGA 59.586 50.000 14.97 14.97 42.14 2.59
2668 4142 2.415857 AGTCTTCGTCTGCTGTACGTAG 59.584 50.000 0.00 12.36 41.08 3.51
2670 4144 1.236628 AGTCTTCGTCTGCTGTACGT 58.763 50.000 12.54 0.00 41.08 3.57
2671 4145 3.162068 GTTAGTCTTCGTCTGCTGTACG 58.838 50.000 8.51 8.51 41.64 3.67
2673 4147 2.810274 ACGTTAGTCTTCGTCTGCTGTA 59.190 45.455 0.00 0.00 35.30 2.74
2674 4148 1.607628 ACGTTAGTCTTCGTCTGCTGT 59.392 47.619 0.00 0.00 35.30 4.40
2675 4149 2.333389 ACGTTAGTCTTCGTCTGCTG 57.667 50.000 0.00 0.00 35.30 4.41
2678 4152 4.088213 GCAGTTTACGTTAGTCTTCGTCTG 59.912 45.833 0.00 8.60 40.70 3.51
2680 4154 3.363128 GGCAGTTTACGTTAGTCTTCGTC 59.637 47.826 0.00 0.00 40.70 4.20
2683 4157 6.155136 AGTTAGGCAGTTTACGTTAGTCTTC 58.845 40.000 0.00 0.00 0.00 2.87
2684 4158 6.094193 AGTTAGGCAGTTTACGTTAGTCTT 57.906 37.500 0.00 0.00 0.00 3.01
2685 4159 5.718724 AGTTAGGCAGTTTACGTTAGTCT 57.281 39.130 0.00 0.00 0.00 3.24
2686 4160 8.471361 AATTAGTTAGGCAGTTTACGTTAGTC 57.529 34.615 0.00 0.00 0.00 2.59
2692 4189 8.106348 CGAAGTTAATTAGTTAGGCAGTTTACG 58.894 37.037 0.00 0.00 0.00 3.18
2695 4192 7.373778 CCGAAGTTAATTAGTTAGGCAGTTT 57.626 36.000 0.00 0.00 0.00 2.66
2702 4199 4.132336 GGGGGCCGAAGTTAATTAGTTAG 58.868 47.826 0.00 0.00 0.00 2.34
2703 4200 4.155063 GGGGGCCGAAGTTAATTAGTTA 57.845 45.455 0.00 0.00 0.00 2.24
2727 4224 1.257750 GCCCCACCCACCTGAAAATC 61.258 60.000 0.00 0.00 0.00 2.17
2728 4225 1.229177 GCCCCACCCACCTGAAAAT 60.229 57.895 0.00 0.00 0.00 1.82
2729 4226 2.200092 GCCCCACCCACCTGAAAA 59.800 61.111 0.00 0.00 0.00 2.29
2745 4242 3.421386 GAAGGGGGAGGAAGGGGC 61.421 72.222 0.00 0.00 0.00 5.80
2747 4244 1.694525 GGAGAAGGGGGAGGAAGGG 60.695 68.421 0.00 0.00 0.00 3.95
2749 4246 1.601248 ATTGGAGAAGGGGGAGGAAG 58.399 55.000 0.00 0.00 0.00 3.46
2751 4248 1.657162 AGTATTGGAGAAGGGGGAGGA 59.343 52.381 0.00 0.00 0.00 3.71
2752 4249 2.198334 AGTATTGGAGAAGGGGGAGG 57.802 55.000 0.00 0.00 0.00 4.30
2753 4250 5.913946 AATTAGTATTGGAGAAGGGGGAG 57.086 43.478 0.00 0.00 0.00 4.30
2754 4251 5.309806 GCTAATTAGTATTGGAGAAGGGGGA 59.690 44.000 13.91 0.00 0.00 4.81
2755 4252 5.515008 GGCTAATTAGTATTGGAGAAGGGGG 60.515 48.000 13.91 0.00 0.00 5.40
2756 4253 5.073144 TGGCTAATTAGTATTGGAGAAGGGG 59.927 44.000 13.91 0.00 0.00 4.79
2757 4254 5.998363 GTGGCTAATTAGTATTGGAGAAGGG 59.002 44.000 13.91 0.00 0.00 3.95
2758 4255 5.696724 CGTGGCTAATTAGTATTGGAGAAGG 59.303 44.000 13.91 0.00 0.00 3.46
2759 4256 6.281405 ACGTGGCTAATTAGTATTGGAGAAG 58.719 40.000 13.91 0.00 0.00 2.85
2760 4257 6.229936 ACGTGGCTAATTAGTATTGGAGAA 57.770 37.500 13.91 0.00 0.00 2.87
2761 4258 5.864418 ACGTGGCTAATTAGTATTGGAGA 57.136 39.130 13.91 0.00 0.00 3.71
2762 4259 5.277345 GCAACGTGGCTAATTAGTATTGGAG 60.277 44.000 7.95 2.13 0.00 3.86
2763 4260 4.573201 GCAACGTGGCTAATTAGTATTGGA 59.427 41.667 7.95 0.00 0.00 3.53
2764 4261 4.334203 TGCAACGTGGCTAATTAGTATTGG 59.666 41.667 17.46 3.39 34.04 3.16
2765 4262 5.064707 AGTGCAACGTGGCTAATTAGTATTG 59.935 40.000 17.46 11.41 45.86 1.90
2766 4263 5.183228 AGTGCAACGTGGCTAATTAGTATT 58.817 37.500 17.46 0.00 45.86 1.89
2767 4264 4.766375 AGTGCAACGTGGCTAATTAGTAT 58.234 39.130 17.46 0.00 45.86 2.12
2768 4265 4.196626 AGTGCAACGTGGCTAATTAGTA 57.803 40.909 17.46 1.33 45.86 1.82
2769 4266 3.053831 AGTGCAACGTGGCTAATTAGT 57.946 42.857 17.46 0.00 45.86 2.24
2771 4268 4.143073 CGTAAAGTGCAACGTGGCTAATTA 60.143 41.667 17.46 9.31 45.86 1.40
2772 4269 3.364565 CGTAAAGTGCAACGTGGCTAATT 60.365 43.478 17.46 10.29 45.86 1.40
2775 4272 1.141645 CGTAAAGTGCAACGTGGCTA 58.858 50.000 17.46 0.00 45.86 3.93
2776 4273 1.938861 CGTAAAGTGCAACGTGGCT 59.061 52.632 17.46 0.00 45.86 4.75
2777 4274 4.507794 CGTAAAGTGCAACGTGGC 57.492 55.556 8.35 8.35 45.86 5.01
2781 4278 4.899579 GTGTTTTACGTAAAGTGCAACG 57.100 40.909 19.31 7.09 45.86 4.10
2805 4302 9.982291 CAATGCTACACTTACGTAAATAATGTT 57.018 29.630 9.68 0.00 0.00 2.71
2806 4303 8.120465 GCAATGCTACACTTACGTAAATAATGT 58.880 33.333 9.68 12.84 0.00 2.71
2807 4304 8.335356 AGCAATGCTACACTTACGTAAATAATG 58.665 33.333 5.69 7.99 36.99 1.90
2808 4305 8.433421 AGCAATGCTACACTTACGTAAATAAT 57.567 30.769 5.69 0.00 36.99 1.28
2809 4306 7.253850 CGAGCAATGCTACACTTACGTAAATAA 60.254 37.037 8.12 0.00 39.88 1.40
2810 4307 6.197655 CGAGCAATGCTACACTTACGTAAATA 59.802 38.462 8.12 1.98 39.88 1.40
2813 4310 3.855379 CGAGCAATGCTACACTTACGTAA 59.145 43.478 8.12 7.94 39.88 3.18
2814 4311 3.431856 CGAGCAATGCTACACTTACGTA 58.568 45.455 8.12 0.00 39.88 3.57
2815 4312 2.259618 CGAGCAATGCTACACTTACGT 58.740 47.619 8.12 0.00 39.88 3.57
2816 4313 1.005975 GCGAGCAATGCTACACTTACG 60.006 52.381 8.12 6.81 39.88 3.18
2817 4314 1.999735 TGCGAGCAATGCTACACTTAC 59.000 47.619 8.12 0.00 39.88 2.34
2818 4315 2.378445 TGCGAGCAATGCTACACTTA 57.622 45.000 8.12 0.00 39.88 2.24
2819 4316 1.466167 CTTGCGAGCAATGCTACACTT 59.534 47.619 8.12 0.00 39.88 3.16
2821 4318 1.078709 TCTTGCGAGCAATGCTACAC 58.921 50.000 8.12 0.73 39.88 2.90
2822 4319 1.733912 CTTCTTGCGAGCAATGCTACA 59.266 47.619 8.12 7.07 39.88 2.74
2823 4320 2.002586 TCTTCTTGCGAGCAATGCTAC 58.997 47.619 8.12 4.03 39.88 3.58
2824 4321 2.385013 TCTTCTTGCGAGCAATGCTA 57.615 45.000 8.12 0.00 39.88 3.49
2825 4322 1.527034 TTCTTCTTGCGAGCAATGCT 58.473 45.000 7.79 7.79 43.88 3.79
2831 4328 1.867233 TCACAGTTTCTTCTTGCGAGC 59.133 47.619 0.00 0.00 0.00 5.03
2832 4329 4.536364 TTTCACAGTTTCTTCTTGCGAG 57.464 40.909 0.00 0.00 0.00 5.03
2928 4435 5.500234 TCAATTCTCCATGAAACCCTACAG 58.500 41.667 0.00 0.00 38.29 2.74
2956 4463 5.045651 TGCCTCCAGTTTGAATTCTCTCATA 60.046 40.000 7.05 0.00 0.00 2.15
2958 4465 3.072915 TGCCTCCAGTTTGAATTCTCTCA 59.927 43.478 7.05 0.00 0.00 3.27
3045 4836 7.503566 TCTGATGGGGTCATAAGAAATGAAATC 59.496 37.037 0.00 0.00 37.81 2.17
3088 4885 4.814147 TCGACTGTCGAGGATATATACGT 58.186 43.478 27.26 0.00 44.82 3.57
3102 4899 1.080434 GCCTGGAGTGTCGACTGTC 60.080 63.158 17.92 12.65 30.16 3.51
3103 4900 2.574955 GGCCTGGAGTGTCGACTGT 61.575 63.158 17.92 3.25 30.16 3.55
3104 4901 1.892819 ATGGCCTGGAGTGTCGACTG 61.893 60.000 17.92 0.26 30.16 3.51
3132 4930 1.655885 GCATGCAAGTGTGTGAGCA 59.344 52.632 14.21 0.00 41.73 4.26
3215 5013 5.726963 GCAACGACGAGGAGATAAATTTTCC 60.727 44.000 0.00 0.00 0.00 3.13
3275 5073 4.099573 GTCCGAAGACCATCTCTTTATCCA 59.900 45.833 0.00 0.00 39.53 3.41
3304 5102 3.426787 TCTGGTAGAATCGCCCAAAAA 57.573 42.857 0.00 0.00 0.00 1.94
3305 5103 3.644966 ATCTGGTAGAATCGCCCAAAA 57.355 42.857 0.00 0.00 0.00 2.44
3306 5104 3.541632 GAATCTGGTAGAATCGCCCAAA 58.458 45.455 0.00 0.00 0.00 3.28
3307 5105 2.483013 CGAATCTGGTAGAATCGCCCAA 60.483 50.000 3.69 0.00 40.23 4.12
3308 5106 1.068588 CGAATCTGGTAGAATCGCCCA 59.931 52.381 3.69 0.00 40.23 5.36
3309 5107 1.784525 CGAATCTGGTAGAATCGCCC 58.215 55.000 3.69 0.00 40.23 6.13
3313 5111 1.270893 GGGGGCGAATCTGGTAGAATC 60.271 57.143 0.00 0.00 0.00 2.52
3314 5112 0.765510 GGGGGCGAATCTGGTAGAAT 59.234 55.000 0.00 0.00 0.00 2.40
3315 5113 2.218066 GGGGGCGAATCTGGTAGAA 58.782 57.895 0.00 0.00 0.00 2.10
3316 5114 3.965660 GGGGGCGAATCTGGTAGA 58.034 61.111 0.00 0.00 0.00 2.59
3330 5128 3.093172 GAGAAGCTGGGGAGGGGG 61.093 72.222 0.00 0.00 0.00 5.40
3331 5129 3.093172 GGAGAAGCTGGGGAGGGG 61.093 72.222 0.00 0.00 0.00 4.79
3332 5130 3.093172 GGGAGAAGCTGGGGAGGG 61.093 72.222 0.00 0.00 0.00 4.30
3333 5131 2.285668 TGGGAGAAGCTGGGGAGG 60.286 66.667 0.00 0.00 0.00 4.30
3334 5132 0.911525 TTCTGGGAGAAGCTGGGGAG 60.912 60.000 0.00 0.00 29.50 4.30
3335 5133 0.253347 ATTCTGGGAGAAGCTGGGGA 60.253 55.000 0.00 0.00 37.69 4.81
3336 5134 0.182299 GATTCTGGGAGAAGCTGGGG 59.818 60.000 0.00 0.00 37.62 4.96
3337 5135 0.914644 TGATTCTGGGAGAAGCTGGG 59.085 55.000 3.49 0.00 40.96 4.45
3338 5136 1.407989 GGTGATTCTGGGAGAAGCTGG 60.408 57.143 3.49 0.00 40.96 4.85
3339 5137 1.280133 TGGTGATTCTGGGAGAAGCTG 59.720 52.381 3.49 0.00 40.96 4.24
3340 5138 1.280421 GTGGTGATTCTGGGAGAAGCT 59.720 52.381 3.49 0.00 40.96 3.74
3341 5139 1.280421 AGTGGTGATTCTGGGAGAAGC 59.720 52.381 0.00 0.00 40.77 3.86
3342 5140 2.093235 GGAGTGGTGATTCTGGGAGAAG 60.093 54.545 0.00 0.00 37.69 2.85
3343 5141 1.909302 GGAGTGGTGATTCTGGGAGAA 59.091 52.381 0.00 0.00 38.78 2.87
3344 5142 1.203300 TGGAGTGGTGATTCTGGGAGA 60.203 52.381 0.00 0.00 0.00 3.71
3345 5143 1.279496 TGGAGTGGTGATTCTGGGAG 58.721 55.000 0.00 0.00 0.00 4.30
3346 5144 1.971149 ATGGAGTGGTGATTCTGGGA 58.029 50.000 0.00 0.00 0.00 4.37
3347 5145 3.137176 ACATATGGAGTGGTGATTCTGGG 59.863 47.826 7.80 0.00 0.00 4.45
3348 5146 4.428294 ACATATGGAGTGGTGATTCTGG 57.572 45.455 7.80 0.00 0.00 3.86
3349 5147 6.764308 AAAACATATGGAGTGGTGATTCTG 57.236 37.500 7.80 0.00 0.00 3.02
3424 5222 8.926710 CAACTTCTTCTAAAATCGTCACTACAT 58.073 33.333 0.00 0.00 0.00 2.29
3425 5223 7.384115 CCAACTTCTTCTAAAATCGTCACTACA 59.616 37.037 0.00 0.00 0.00 2.74
3426 5224 7.148623 CCCAACTTCTTCTAAAATCGTCACTAC 60.149 40.741 0.00 0.00 0.00 2.73
3427 5225 6.872020 CCCAACTTCTTCTAAAATCGTCACTA 59.128 38.462 0.00 0.00 0.00 2.74
3428 5226 5.701290 CCCAACTTCTTCTAAAATCGTCACT 59.299 40.000 0.00 0.00 0.00 3.41
3429 5227 5.106673 CCCCAACTTCTTCTAAAATCGTCAC 60.107 44.000 0.00 0.00 0.00 3.67
3430 5228 5.001232 CCCCAACTTCTTCTAAAATCGTCA 58.999 41.667 0.00 0.00 0.00 4.35
3431 5229 5.243207 TCCCCAACTTCTTCTAAAATCGTC 58.757 41.667 0.00 0.00 0.00 4.20
3432 5230 5.237236 TCCCCAACTTCTTCTAAAATCGT 57.763 39.130 0.00 0.00 0.00 3.73
3433 5231 4.636206 CCTCCCCAACTTCTTCTAAAATCG 59.364 45.833 0.00 0.00 0.00 3.34
3434 5232 4.950475 CCCTCCCCAACTTCTTCTAAAATC 59.050 45.833 0.00 0.00 0.00 2.17
3435 5233 4.606255 TCCCTCCCCAACTTCTTCTAAAAT 59.394 41.667 0.00 0.00 0.00 1.82
3436 5234 3.984770 TCCCTCCCCAACTTCTTCTAAAA 59.015 43.478 0.00 0.00 0.00 1.52
3437 5235 3.587506 CTCCCTCCCCAACTTCTTCTAAA 59.412 47.826 0.00 0.00 0.00 1.85
3438 5236 3.182152 CTCCCTCCCCAACTTCTTCTAA 58.818 50.000 0.00 0.00 0.00 2.10
3439 5237 2.562214 CCTCCCTCCCCAACTTCTTCTA 60.562 54.545 0.00 0.00 0.00 2.10
3440 5238 1.662686 CTCCCTCCCCAACTTCTTCT 58.337 55.000 0.00 0.00 0.00 2.85
3441 5239 0.621082 CCTCCCTCCCCAACTTCTTC 59.379 60.000 0.00 0.00 0.00 2.87
3442 5240 1.501654 GCCTCCCTCCCCAACTTCTT 61.502 60.000 0.00 0.00 0.00 2.52
3443 5241 1.925972 GCCTCCCTCCCCAACTTCT 60.926 63.158 0.00 0.00 0.00 2.85
3444 5242 2.677848 GCCTCCCTCCCCAACTTC 59.322 66.667 0.00 0.00 0.00 3.01
3445 5243 3.330720 CGCCTCCCTCCCCAACTT 61.331 66.667 0.00 0.00 0.00 2.66
3446 5244 3.642741 ATCGCCTCCCTCCCCAACT 62.643 63.158 0.00 0.00 0.00 3.16
3447 5245 2.211468 AAATCGCCTCCCTCCCCAAC 62.211 60.000 0.00 0.00 0.00 3.77
3448 5246 1.506028 AAAATCGCCTCCCTCCCCAA 61.506 55.000 0.00 0.00 0.00 4.12
3449 5247 1.928567 AAAATCGCCTCCCTCCCCA 60.929 57.895 0.00 0.00 0.00 4.96
3450 5248 1.453928 CAAAATCGCCTCCCTCCCC 60.454 63.158 0.00 0.00 0.00 4.81
3451 5249 0.464554 CTCAAAATCGCCTCCCTCCC 60.465 60.000 0.00 0.00 0.00 4.30
3452 5250 0.541863 TCTCAAAATCGCCTCCCTCC 59.458 55.000 0.00 0.00 0.00 4.30
3453 5251 1.482593 TCTCTCAAAATCGCCTCCCTC 59.517 52.381 0.00 0.00 0.00 4.30
3454 5252 1.573108 TCTCTCAAAATCGCCTCCCT 58.427 50.000 0.00 0.00 0.00 4.20
3455 5253 2.403252 TTCTCTCAAAATCGCCTCCC 57.597 50.000 0.00 0.00 0.00 4.30
3456 5254 2.541762 CGATTCTCTCAAAATCGCCTCC 59.458 50.000 5.45 0.00 46.01 4.30
3457 5255 3.850657 CGATTCTCTCAAAATCGCCTC 57.149 47.619 5.45 0.00 46.01 4.70
3462 5260 4.600012 TTTCGGCGATTCTCTCAAAATC 57.400 40.909 11.76 0.00 0.00 2.17
3463 5261 4.695455 TCTTTTCGGCGATTCTCTCAAAAT 59.305 37.500 11.76 0.00 0.00 1.82
3464 5262 4.062293 TCTTTTCGGCGATTCTCTCAAAA 58.938 39.130 11.76 4.61 0.00 2.44
3465 5263 3.659786 TCTTTTCGGCGATTCTCTCAAA 58.340 40.909 11.76 5.41 0.00 2.69
3466 5264 3.313012 TCTTTTCGGCGATTCTCTCAA 57.687 42.857 11.76 0.00 0.00 3.02
3467 5265 2.993899 GTTCTTTTCGGCGATTCTCTCA 59.006 45.455 11.76 0.00 0.00 3.27
3468 5266 3.061429 CAGTTCTTTTCGGCGATTCTCTC 59.939 47.826 11.76 0.82 0.00 3.20
3469 5267 2.996621 CAGTTCTTTTCGGCGATTCTCT 59.003 45.455 11.76 2.22 0.00 3.10
3470 5268 2.094417 CCAGTTCTTTTCGGCGATTCTC 59.906 50.000 11.76 0.00 0.00 2.87
3471 5269 2.076863 CCAGTTCTTTTCGGCGATTCT 58.923 47.619 11.76 0.35 0.00 2.40
3472 5270 1.465856 GCCAGTTCTTTTCGGCGATTC 60.466 52.381 11.76 0.00 34.26 2.52
3473 5271 0.521735 GCCAGTTCTTTTCGGCGATT 59.478 50.000 11.76 0.00 34.26 3.34
3474 5272 1.305930 GGCCAGTTCTTTTCGGCGAT 61.306 55.000 11.76 0.00 45.85 4.58
3475 5273 1.964373 GGCCAGTTCTTTTCGGCGA 60.964 57.895 4.99 4.99 45.85 5.54
3476 5274 2.561373 GGCCAGTTCTTTTCGGCG 59.439 61.111 0.00 0.00 45.85 6.46
3477 5275 1.179174 AAGGGCCAGTTCTTTTCGGC 61.179 55.000 6.18 0.00 44.10 5.54
3478 5276 1.000274 CAAAGGGCCAGTTCTTTTCGG 60.000 52.381 6.18 0.00 31.60 4.30
3479 5277 1.681264 ACAAAGGGCCAGTTCTTTTCG 59.319 47.619 6.18 0.00 31.60 3.46
3480 5278 2.224042 CCACAAAGGGCCAGTTCTTTTC 60.224 50.000 6.18 0.00 31.60 2.29
3481 5279 1.762370 CCACAAAGGGCCAGTTCTTTT 59.238 47.619 6.18 0.00 31.60 2.27
3482 5280 1.413118 CCACAAAGGGCCAGTTCTTT 58.587 50.000 6.18 1.34 33.95 2.52
3483 5281 3.131850 CCACAAAGGGCCAGTTCTT 57.868 52.632 6.18 0.00 0.00 2.52
3484 5282 4.929807 CCACAAAGGGCCAGTTCT 57.070 55.556 6.18 0.00 0.00 3.01
3492 5290 3.124921 CGTAGCCGCCACAAAGGG 61.125 66.667 0.00 0.00 38.09 3.95
3498 5296 1.810030 CTTCTTCCGTAGCCGCCAC 60.810 63.158 0.00 0.00 0.00 5.01
3505 5303 1.227002 GCTCCCGCTTCTTCCGTAG 60.227 63.158 0.00 0.00 0.00 3.51
3516 5314 4.388499 TTCCACGAAGGCTCCCGC 62.388 66.667 8.82 0.00 37.29 6.13
3517 5315 2.125512 CTTCCACGAAGGCTCCCG 60.126 66.667 7.56 7.56 36.16 5.14
3528 5326 4.876107 TGACAAAGACAACTCTTCTTCCAC 59.124 41.667 0.00 0.00 35.52 4.02
3533 5331 5.293560 GCTAGTGACAAAGACAACTCTTCT 58.706 41.667 0.00 0.00 35.52 2.85
3566 5364 3.019564 AGCAGAGTTGTCTTGCAAGTTT 58.980 40.909 25.19 8.25 40.58 2.66
3568 5366 2.216898 GAGCAGAGTTGTCTTGCAAGT 58.783 47.619 25.19 6.27 42.99 3.16
3571 5369 0.601046 CGGAGCAGAGTTGTCTTGCA 60.601 55.000 0.00 0.00 32.39 4.08
3574 5372 0.318762 GGTCGGAGCAGAGTTGTCTT 59.681 55.000 1.64 0.00 0.00 3.01
3576 5374 0.389166 CAGGTCGGAGCAGAGTTGTC 60.389 60.000 10.15 0.00 0.00 3.18
3582 5380 2.117423 TGGTCAGGTCGGAGCAGA 59.883 61.111 10.15 3.93 40.11 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.