Multiple sequence alignment - TraesCS3A01G151700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G151700 chr3A 100.000 5761 0 0 1 5761 141046585 141040825 0.000000e+00 10639.0
1 TraesCS3A01G151700 chr3B 94.047 3091 161 16 599 3674 182740204 182743286 0.000000e+00 4667.0
2 TraesCS3A01G151700 chr3B 93.727 813 37 4 4463 5264 182744024 182744833 0.000000e+00 1206.0
3 TraesCS3A01G151700 chr3B 94.970 338 14 1 4133 4467 182743646 182743983 1.420000e-145 527.0
4 TraesCS3A01G151700 chr3B 97.436 195 5 0 3940 4134 182743294 182743488 3.330000e-87 333.0
5 TraesCS3A01G151700 chr3B 85.802 324 26 11 5338 5660 182744832 182745136 5.570000e-85 326.0
6 TraesCS3A01G151700 chr3B 97.590 83 2 0 5679 5761 182745124 182745206 6.020000e-30 143.0
7 TraesCS3A01G151700 chr3D 92.237 2937 148 34 602 3496 128989744 128992642 0.000000e+00 4087.0
8 TraesCS3A01G151700 chr3D 94.535 1354 44 15 3937 5264 128992931 128994280 0.000000e+00 2063.0
9 TraesCS3A01G151700 chr3D 90.549 328 22 5 5338 5659 128994279 128994603 5.340000e-115 425.0
10 TraesCS3A01G151700 chr3D 96.703 182 5 1 3494 3674 128992745 128992926 9.380000e-78 302.0
11 TraesCS3A01G151700 chr3D 93.976 83 5 0 5679 5761 128994592 128994674 6.060000e-25 126.0
12 TraesCS3A01G151700 chr5B 89.929 566 48 8 1 563 26603441 26604000 0.000000e+00 721.0
13 TraesCS3A01G151700 chr4B 89.165 563 54 7 1 559 656916193 656916752 0.000000e+00 695.0
14 TraesCS3A01G151700 chr2A 88.770 561 56 7 1 558 113947240 113947796 0.000000e+00 680.0
15 TraesCS3A01G151700 chr2A 88.539 445 47 4 1 443 427334592 427335034 2.360000e-148 536.0
16 TraesCS3A01G151700 chr2A 93.671 79 4 1 5261 5339 89486320 89486243 3.650000e-22 117.0
17 TraesCS3A01G151700 chr7A 88.057 561 60 7 1 556 29827099 29826541 0.000000e+00 658.0
18 TraesCS3A01G151700 chr6D 88.973 526 48 9 33 553 138556110 138555590 4.870000e-180 641.0
19 TraesCS3A01G151700 chr5D 87.590 556 65 4 1 554 510580935 510581488 4.870000e-180 641.0
20 TraesCS3A01G151700 chr5D 83.007 153 16 9 1388 1534 524492161 524492013 4.680000e-26 130.0
21 TraesCS3A01G151700 chr6B 86.404 559 52 11 1 556 1955699 1956236 1.790000e-164 590.0
22 TraesCS3A01G151700 chr6B 89.011 364 30 7 1 363 189154993 189155347 5.300000e-120 442.0
23 TraesCS3A01G151700 chr6B 89.091 330 30 3 227 556 654821052 654820729 6.950000e-109 405.0
24 TraesCS3A01G151700 chr6B 88.832 197 22 0 360 556 189185483 189185679 5.770000e-60 243.0
25 TraesCS3A01G151700 chr6B 88.889 153 12 5 1 152 654821196 654821048 3.550000e-42 183.0
26 TraesCS3A01G151700 chr6B 89.773 88 6 1 5252 5339 22733658 22733742 6.100000e-20 110.0
27 TraesCS3A01G151700 chr6B 85.294 68 8 2 9 74 678743180 678743113 1.040000e-07 69.4
28 TraesCS3A01G151700 chr5A 98.162 272 4 1 3668 3938 238827482 238827753 1.880000e-129 473.0
29 TraesCS3A01G151700 chr5A 98.491 265 4 0 3674 3938 238861993 238861729 8.740000e-128 468.0
30 TraesCS3A01G151700 chr5A 91.765 85 3 2 5263 5343 614040541 614040457 1.310000e-21 115.0
31 TraesCS3A01G151700 chr5A 82.734 139 12 9 1400 1534 650686526 650686396 4.720000e-21 113.0
32 TraesCS3A01G151700 chr1A 98.120 266 5 0 3674 3939 334093396 334093131 1.130000e-126 464.0
33 TraesCS3A01G151700 chrUn 98.113 265 5 0 3674 3938 209407373 209407109 4.070000e-126 462.0
34 TraesCS3A01G151700 chrUn 98.113 265 5 0 3674 3938 396261426 396261162 4.070000e-126 462.0
35 TraesCS3A01G151700 chrUn 98.113 265 5 0 3674 3938 417900106 417899842 4.070000e-126 462.0
36 TraesCS3A01G151700 chrUn 93.671 79 3 2 5263 5339 24265352 24265274 3.650000e-22 117.0
37 TraesCS3A01G151700 chr7D 98.113 265 5 0 3674 3938 579000522 579000786 4.070000e-126 462.0
38 TraesCS3A01G151700 chr7D 94.805 77 3 1 5263 5339 43122529 43122454 1.010000e-22 119.0
39 TraesCS3A01G151700 chr2D 98.113 265 5 0 3674 3938 17994068 17994332 4.070000e-126 462.0
40 TraesCS3A01G151700 chr2D 95.000 80 2 2 5263 5340 315109573 315109652 2.180000e-24 124.0
41 TraesCS3A01G151700 chr1D 98.113 265 5 0 3674 3938 212438610 212438874 4.070000e-126 462.0
42 TraesCS3A01G151700 chr2B 88.485 330 37 1 227 556 100383243 100382915 1.160000e-106 398.0
43 TraesCS3A01G151700 chr4D 92.941 85 4 1 5259 5343 12517362 12517444 7.840000e-24 122.0
44 TraesCS3A01G151700 chr6A 90.588 85 7 1 5255 5339 97593907 97593990 1.700000e-20 111.0
45 TraesCS3A01G151700 chr4A 89.773 88 5 3 5256 5340 45946935 45947021 6.100000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G151700 chr3A 141040825 141046585 5760 True 10639.000000 10639 100.000000 1 5761 1 chr3A.!!$R1 5760
1 TraesCS3A01G151700 chr3B 182740204 182745206 5002 False 1200.333333 4667 93.928667 599 5761 6 chr3B.!!$F1 5162
2 TraesCS3A01G151700 chr3D 128989744 128994674 4930 False 1400.600000 4087 93.600000 602 5761 5 chr3D.!!$F1 5159
3 TraesCS3A01G151700 chr5B 26603441 26604000 559 False 721.000000 721 89.929000 1 563 1 chr5B.!!$F1 562
4 TraesCS3A01G151700 chr4B 656916193 656916752 559 False 695.000000 695 89.165000 1 559 1 chr4B.!!$F1 558
5 TraesCS3A01G151700 chr2A 113947240 113947796 556 False 680.000000 680 88.770000 1 558 1 chr2A.!!$F1 557
6 TraesCS3A01G151700 chr7A 29826541 29827099 558 True 658.000000 658 88.057000 1 556 1 chr7A.!!$R1 555
7 TraesCS3A01G151700 chr6D 138555590 138556110 520 True 641.000000 641 88.973000 33 553 1 chr6D.!!$R1 520
8 TraesCS3A01G151700 chr5D 510580935 510581488 553 False 641.000000 641 87.590000 1 554 1 chr5D.!!$F1 553
9 TraesCS3A01G151700 chr6B 1955699 1956236 537 False 590.000000 590 86.404000 1 556 1 chr6B.!!$F1 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
468 477 0.109723 TTGCCGGACAGCTAGGTTTT 59.890 50.0 5.05 0.0 0.00 2.43 F
1010 1024 0.034756 CAGGACGTCATGTTCCCACA 59.965 55.0 21.48 0.0 37.31 4.17 F
1414 1447 0.460987 CATCGTCTTCAGGGTCTGGC 60.461 60.0 0.00 0.0 31.51 4.85 F
2621 2673 0.179000 CATTTAGCCACTCCCGCTCT 59.821 55.0 0.00 0.0 37.79 4.09 F
3241 3300 0.604511 AACCTAAAAGTGGGTCGGCG 60.605 55.0 0.00 0.0 37.71 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1579 1612 0.602562 TTGCCGATTTTTCTGCCCAG 59.397 50.000 0.00 0.00 0.00 4.45 R
2321 2365 1.067295 AGAAGTTGGGATGCACTCCA 58.933 50.000 14.57 10.73 46.98 3.86 R
3241 3300 0.676151 CTCCTTGGTTCTGCTCTGGC 60.676 60.000 0.00 0.00 39.26 4.85 R
3743 3908 0.102300 TGTCCTCATCCGCGTGTATG 59.898 55.000 4.92 6.17 0.00 2.39 R
4775 5152 1.144708 TGGGCAGAAGAACCATTGTCA 59.855 47.619 0.00 0.00 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 46 9.307121 TGTTCACGTTTTCAAAAATGTATTGAT 57.693 25.926 11.60 0.00 44.03 2.57
197 202 7.563888 TCTTCATAGCTTCAAAAGATGATGG 57.436 36.000 0.00 0.00 38.03 3.51
305 312 6.536731 TTTAAGTAATGTTCCGTTTACGCA 57.463 33.333 0.00 0.00 38.18 5.24
327 335 8.985805 ACGCAACTAAATATAGTACTTTATGGC 58.014 33.333 0.00 1.54 41.57 4.40
382 390 2.176889 GTGGACTGGTTAGCTGGACTA 58.823 52.381 0.00 0.00 0.00 2.59
391 399 4.344102 TGGTTAGCTGGACTAATTCGCTAT 59.656 41.667 0.00 0.00 42.75 2.97
400 408 3.722147 ACTAATTCGCTATCAGCAGGTG 58.278 45.455 0.00 0.00 42.58 4.00
423 431 2.755929 GTTCGAATCCGAGCTTGCT 58.244 52.632 0.00 0.00 46.39 3.91
468 477 0.109723 TTGCCGGACAGCTAGGTTTT 59.890 50.000 5.05 0.00 0.00 2.43
489 503 2.122783 TCAACTCAAAATAGGCCGGG 57.877 50.000 2.18 0.00 0.00 5.73
561 575 0.763223 GAATAGGAGCTCCCCCGGAA 60.763 60.000 29.54 8.47 36.42 4.30
562 576 0.764752 AATAGGAGCTCCCCCGGAAG 60.765 60.000 29.54 0.00 36.42 3.46
563 577 1.962570 ATAGGAGCTCCCCCGGAAGT 61.963 60.000 29.54 10.66 36.42 3.01
564 578 2.584873 TAGGAGCTCCCCCGGAAGTC 62.585 65.000 29.54 0.00 36.42 3.01
565 579 3.839432 GAGCTCCCCCGGAAGTCG 61.839 72.222 0.73 0.00 38.88 4.18
574 588 3.382832 CGGAAGTCGGGGCTGTCT 61.383 66.667 0.00 0.00 34.75 3.41
575 589 2.266055 GGAAGTCGGGGCTGTCTG 59.734 66.667 0.00 0.00 0.00 3.51
576 590 2.283529 GGAAGTCGGGGCTGTCTGA 61.284 63.158 0.00 0.00 0.00 3.27
577 591 1.671742 GAAGTCGGGGCTGTCTGAA 59.328 57.895 0.00 0.00 0.00 3.02
578 592 0.390472 GAAGTCGGGGCTGTCTGAAG 60.390 60.000 0.00 0.00 0.00 3.02
579 593 0.832135 AAGTCGGGGCTGTCTGAAGA 60.832 55.000 0.00 0.00 0.00 2.87
580 594 0.616111 AGTCGGGGCTGTCTGAAGAT 60.616 55.000 0.00 0.00 0.00 2.40
581 595 0.179097 GTCGGGGCTGTCTGAAGATC 60.179 60.000 0.00 0.00 0.00 2.75
582 596 0.324738 TCGGGGCTGTCTGAAGATCT 60.325 55.000 0.00 0.00 0.00 2.75
583 597 0.539051 CGGGGCTGTCTGAAGATCTT 59.461 55.000 7.95 7.95 0.00 2.40
584 598 1.472376 CGGGGCTGTCTGAAGATCTTC 60.472 57.143 25.68 25.68 39.91 2.87
585 599 1.836802 GGGGCTGTCTGAAGATCTTCT 59.163 52.381 30.45 1.41 40.14 2.85
586 600 2.158971 GGGGCTGTCTGAAGATCTTCTC 60.159 54.545 30.45 21.51 40.14 2.87
587 601 2.499289 GGGCTGTCTGAAGATCTTCTCA 59.501 50.000 30.45 24.01 40.14 3.27
588 602 3.055530 GGGCTGTCTGAAGATCTTCTCAA 60.056 47.826 30.45 16.21 40.14 3.02
589 603 4.564406 GGGCTGTCTGAAGATCTTCTCAAA 60.564 45.833 30.45 13.65 40.14 2.69
590 604 4.999950 GGCTGTCTGAAGATCTTCTCAAAA 59.000 41.667 30.45 13.31 40.14 2.44
591 605 5.471456 GGCTGTCTGAAGATCTTCTCAAAAA 59.529 40.000 30.45 12.67 40.14 1.94
701 715 1.133606 GGACTCGATCTCTTCCTCCCT 60.134 57.143 0.00 0.00 0.00 4.20
716 730 1.057851 TCCCTTTCCCTTCACCACGT 61.058 55.000 0.00 0.00 0.00 4.49
746 760 1.482593 CCTAGTGCATTCTCCGGAGTT 59.517 52.381 30.17 16.72 0.00 3.01
777 791 2.991190 GTCTCCACTTAATTTCACGCGA 59.009 45.455 15.93 0.00 0.00 5.87
847 861 2.416972 GCGACAAGTCCGAATACCTTCT 60.417 50.000 0.00 0.00 0.00 2.85
976 990 0.600057 GCTTTTCCTTGTCTGCAGGG 59.400 55.000 15.13 7.17 42.60 4.45
979 993 1.064003 TTTCCTTGTCTGCAGGGCTA 58.936 50.000 15.13 3.66 41.18 3.93
1010 1024 0.034756 CAGGACGTCATGTTCCCACA 59.965 55.000 21.48 0.00 37.31 4.17
1206 1238 2.175878 TGAAGAAGCTGCAAGAGACC 57.824 50.000 1.02 0.00 34.07 3.85
1241 1273 2.678190 GCGCTCTGTGAGTTCCCTAAAT 60.678 50.000 0.00 0.00 31.39 1.40
1288 1321 1.808945 CCAGTCTCTGTGCCATTTGTC 59.191 52.381 0.00 0.00 0.00 3.18
1357 1390 2.743664 TGCACTTGTGAGGAATTCATCG 59.256 45.455 14.82 3.73 38.29 3.84
1414 1447 0.460987 CATCGTCTTCAGGGTCTGGC 60.461 60.000 0.00 0.00 31.51 4.85
1424 1457 0.968393 AGGGTCTGGCGTCTCTTCTC 60.968 60.000 0.00 0.00 0.00 2.87
1453 1486 2.289257 GCCTTGCCATTTTTCAGAGCTT 60.289 45.455 0.00 0.00 0.00 3.74
1715 1748 5.973565 GTGGAACTCAATTCACTTGTTTCTG 59.026 40.000 0.00 0.00 39.30 3.02
1763 1796 3.770933 AGTTAGCATCAAAATGGCCACAT 59.229 39.130 8.16 0.00 39.54 3.21
1780 1813 5.172934 GCCACATATCCAATAAATGCATGG 58.827 41.667 0.00 0.00 35.49 3.66
1797 1830 3.434167 GCATGGCTTCCCTTCTCTTGATA 60.434 47.826 0.00 0.00 0.00 2.15
1808 1841 5.188434 CCTTCTCTTGATATTGTGCAGGAA 58.812 41.667 0.00 0.00 0.00 3.36
1827 1860 4.518211 AGGAAAGTGCAGAATTTGACAGAG 59.482 41.667 0.00 0.00 0.00 3.35
1904 1937 2.076100 CGCAAGGTGCTGTCTCATTTA 58.924 47.619 0.00 0.00 42.25 1.40
1909 1951 5.335897 GCAAGGTGCTGTCTCATTTATTGAA 60.336 40.000 0.00 0.00 40.96 2.69
1922 1964 7.814107 TCTCATTTATTGAAACTGCCATTTCAC 59.186 33.333 11.00 0.00 45.84 3.18
1962 2004 7.373493 TGTAGTAACTAGTAGGAAAACACAGC 58.627 38.462 0.00 0.00 0.00 4.40
1976 2018 4.568152 AACACAGCTGTTCCACAATAAC 57.432 40.909 18.94 0.00 35.57 1.89
1977 2019 3.550820 ACACAGCTGTTCCACAATAACA 58.449 40.909 18.94 0.00 35.61 2.41
1979 2021 4.036734 ACACAGCTGTTCCACAATAACAAG 59.963 41.667 18.94 2.86 36.46 3.16
2084 2128 9.562408 CTAGAATCTGAGGTAAGTATGTACAGA 57.438 37.037 0.33 0.00 37.33 3.41
2100 2144 9.303537 GTATGTACAGAACTCTAAATCCTTGTC 57.696 37.037 0.33 0.00 0.00 3.18
2200 2244 4.700213 TGAGTTTTGGATAGGTTTAGCTGC 59.300 41.667 0.00 0.00 0.00 5.25
2215 2259 5.524971 TTAGCTGCGAGCCTTAAGTTATA 57.475 39.130 0.00 0.00 43.77 0.98
2270 2314 8.729805 TGCCTTATGTTTTTGTTGAATTTCTT 57.270 26.923 0.00 0.00 0.00 2.52
2320 2364 3.502211 AGTTGCCAATTAGTTGTCTTCGG 59.498 43.478 0.00 0.00 33.36 4.30
2321 2365 3.134574 TGCCAATTAGTTGTCTTCGGT 57.865 42.857 0.00 0.00 33.36 4.69
2330 2374 0.396435 TTGTCTTCGGTGGAGTGCAT 59.604 50.000 0.00 0.00 0.00 3.96
2344 2388 1.421268 AGTGCATCCCAACTTCTGTGA 59.579 47.619 0.00 0.00 0.00 3.58
2371 2415 2.754552 TCCATGTACCTTGCTTGATTGC 59.245 45.455 0.00 0.00 0.00 3.56
2392 2436 5.663456 TGCTTTCTTTCAGATTTTTGTGCT 58.337 33.333 0.00 0.00 0.00 4.40
2401 2445 6.875948 TCAGATTTTTGTGCTAGCAGTTTA 57.124 33.333 20.03 3.19 0.00 2.01
2402 2446 6.668323 TCAGATTTTTGTGCTAGCAGTTTAC 58.332 36.000 20.03 6.48 0.00 2.01
2403 2447 6.262049 TCAGATTTTTGTGCTAGCAGTTTACA 59.738 34.615 20.03 9.46 0.00 2.41
2617 2669 0.830648 TCTCCATTTAGCCACTCCCG 59.169 55.000 0.00 0.00 0.00 5.14
2621 2673 0.179000 CATTTAGCCACTCCCGCTCT 59.821 55.000 0.00 0.00 37.79 4.09
2626 2678 2.896443 CCACTCCCGCTCTCCTTC 59.104 66.667 0.00 0.00 0.00 3.46
2632 2684 2.352032 CCCGCTCTCCTTCTTCCGT 61.352 63.158 0.00 0.00 0.00 4.69
2635 2687 1.409427 CCGCTCTCCTTCTTCCGTAAT 59.591 52.381 0.00 0.00 0.00 1.89
2642 2694 2.093658 TCCTTCTTCCGTAATCAGCCAC 60.094 50.000 0.00 0.00 0.00 5.01
2657 2709 0.606401 GCCACATGACCCATATCCCG 60.606 60.000 0.00 0.00 0.00 5.14
2665 2717 2.038426 TGACCCATATCCCGTATGCTTG 59.962 50.000 0.00 0.00 39.10 4.01
2675 2727 2.158900 CCCGTATGCTTGAAGGACATCT 60.159 50.000 0.00 0.00 0.00 2.90
2676 2728 3.126831 CCGTATGCTTGAAGGACATCTC 58.873 50.000 0.00 0.00 0.00 2.75
2681 2733 3.942829 TGCTTGAAGGACATCTCGAAAT 58.057 40.909 0.00 0.00 0.00 2.17
2784 2837 7.472543 CAGTGGTTTATAAGATTGCTGTAACC 58.527 38.462 0.00 0.00 0.00 2.85
2833 2886 5.630121 TCACAGTGTAAATTGACAATCCCT 58.370 37.500 0.05 0.00 0.00 4.20
2887 2943 6.648310 CACTGTCACATTGTTCTCTGAACTAT 59.352 38.462 11.06 6.75 0.00 2.12
2888 2944 6.870965 ACTGTCACATTGTTCTCTGAACTATC 59.129 38.462 11.06 0.26 0.00 2.08
2889 2945 6.997655 TGTCACATTGTTCTCTGAACTATCT 58.002 36.000 11.06 0.00 0.00 1.98
2890 2946 7.093354 TGTCACATTGTTCTCTGAACTATCTC 58.907 38.462 11.06 2.20 0.00 2.75
2891 2947 7.093354 GTCACATTGTTCTCTGAACTATCTCA 58.907 38.462 11.06 0.00 0.00 3.27
2892 2948 7.275341 GTCACATTGTTCTCTGAACTATCTCAG 59.725 40.741 11.06 0.00 43.62 3.35
2972 3031 6.762333 TGTCCAGGTGTGATGATATGATTAG 58.238 40.000 0.00 0.00 0.00 1.73
2976 3035 6.236409 CAGGTGTGATGATATGATTAGCCTT 58.764 40.000 0.00 0.00 0.00 4.35
3030 3089 5.350365 GCCTGATAATTAACACTGACGACAA 59.650 40.000 0.00 0.00 0.00 3.18
3191 3250 1.225373 ATCAAGGAAGGCTGCCCATA 58.775 50.000 16.57 0.00 0.00 2.74
3241 3300 0.604511 AACCTAAAAGTGGGTCGGCG 60.605 55.000 0.00 0.00 37.71 6.46
3315 3374 6.513884 GCAAGTCAAAAGACAGAACATGATGA 60.514 38.462 0.00 0.00 0.00 2.92
3337 3396 6.472887 TGATCAAAAGGTCGAGATAAAAGGT 58.527 36.000 0.00 0.00 0.00 3.50
3342 3401 3.442076 AGGTCGAGATAAAAGGTCCTGT 58.558 45.455 0.00 0.00 0.00 4.00
3524 3688 8.682936 ACTAGGCTTAACAATCTTTGATATGG 57.317 34.615 0.00 0.00 0.00 2.74
3698 3863 6.644248 AAAAGAATAAAAGTAACGTGCCCT 57.356 33.333 0.00 0.00 0.00 5.19
3699 3864 7.748691 AAAAGAATAAAAGTAACGTGCCCTA 57.251 32.000 0.00 0.00 0.00 3.53
3700 3865 6.732531 AAGAATAAAAGTAACGTGCCCTAC 57.267 37.500 0.00 0.00 0.00 3.18
3701 3866 5.181009 AGAATAAAAGTAACGTGCCCTACC 58.819 41.667 0.00 0.00 0.00 3.18
3702 3867 4.831674 ATAAAAGTAACGTGCCCTACCT 57.168 40.909 0.00 0.00 0.00 3.08
3703 3868 2.467566 AAAGTAACGTGCCCTACCTG 57.532 50.000 0.00 0.00 0.00 4.00
3704 3869 1.345063 AAGTAACGTGCCCTACCTGT 58.655 50.000 0.00 0.00 0.00 4.00
3705 3870 1.345063 AGTAACGTGCCCTACCTGTT 58.655 50.000 0.00 0.00 0.00 3.16
3706 3871 2.528564 AGTAACGTGCCCTACCTGTTA 58.471 47.619 0.00 0.00 0.00 2.41
3707 3872 2.494870 AGTAACGTGCCCTACCTGTTAG 59.505 50.000 0.00 0.00 0.00 2.34
3708 3873 1.345063 AACGTGCCCTACCTGTTAGT 58.655 50.000 0.00 0.00 0.00 2.24
3709 3874 2.220653 ACGTGCCCTACCTGTTAGTA 57.779 50.000 0.00 0.00 0.00 1.82
3710 3875 2.528564 ACGTGCCCTACCTGTTAGTAA 58.471 47.619 0.00 0.00 0.00 2.24
3711 3876 2.899256 ACGTGCCCTACCTGTTAGTAAA 59.101 45.455 0.00 0.00 0.00 2.01
3712 3877 3.056322 ACGTGCCCTACCTGTTAGTAAAG 60.056 47.826 0.00 0.00 0.00 1.85
3713 3878 3.056322 CGTGCCCTACCTGTTAGTAAAGT 60.056 47.826 0.00 0.00 0.00 2.66
3714 3879 4.158394 CGTGCCCTACCTGTTAGTAAAGTA 59.842 45.833 0.00 0.00 0.00 2.24
3715 3880 5.336690 CGTGCCCTACCTGTTAGTAAAGTAA 60.337 44.000 0.00 0.00 0.00 2.24
3716 3881 6.104665 GTGCCCTACCTGTTAGTAAAGTAAG 58.895 44.000 0.00 0.00 0.00 2.34
3717 3882 5.188359 TGCCCTACCTGTTAGTAAAGTAAGG 59.812 44.000 0.00 0.00 0.00 2.69
3718 3883 5.668471 CCCTACCTGTTAGTAAAGTAAGGC 58.332 45.833 0.00 0.00 0.00 4.35
3719 3884 5.396101 CCCTACCTGTTAGTAAAGTAAGGCC 60.396 48.000 0.00 0.00 0.00 5.19
3720 3885 5.424573 CCTACCTGTTAGTAAAGTAAGGCCT 59.575 44.000 0.00 0.00 0.00 5.19
3721 3886 5.837770 ACCTGTTAGTAAAGTAAGGCCTT 57.162 39.130 24.18 24.18 0.00 4.35
3722 3887 5.802465 ACCTGTTAGTAAAGTAAGGCCTTC 58.198 41.667 24.49 13.89 0.00 3.46
3723 3888 5.183969 CCTGTTAGTAAAGTAAGGCCTTCC 58.816 45.833 24.49 11.54 0.00 3.46
3724 3889 5.280317 CCTGTTAGTAAAGTAAGGCCTTCCA 60.280 44.000 24.49 1.44 33.74 3.53
3725 3890 5.801380 TGTTAGTAAAGTAAGGCCTTCCAG 58.199 41.667 24.49 0.00 33.74 3.86
3726 3891 5.544948 TGTTAGTAAAGTAAGGCCTTCCAGA 59.455 40.000 24.49 0.02 33.74 3.86
3727 3892 4.828072 AGTAAAGTAAGGCCTTCCAGAG 57.172 45.455 24.49 0.00 33.74 3.35
3728 3893 2.498644 AAAGTAAGGCCTTCCAGAGC 57.501 50.000 24.49 6.63 33.74 4.09
3734 3899 2.847201 GGCCTTCCAGAGCCTATCT 58.153 57.895 0.00 0.00 46.14 1.98
3735 3900 2.016905 GGCCTTCCAGAGCCTATCTA 57.983 55.000 0.00 0.00 46.14 1.98
3736 3901 2.330216 GGCCTTCCAGAGCCTATCTAA 58.670 52.381 0.00 0.00 46.14 2.10
3737 3902 2.037902 GGCCTTCCAGAGCCTATCTAAC 59.962 54.545 0.00 0.00 46.14 2.34
3738 3903 2.700897 GCCTTCCAGAGCCTATCTAACA 59.299 50.000 0.00 0.00 36.10 2.41
3739 3904 3.493524 GCCTTCCAGAGCCTATCTAACAC 60.494 52.174 0.00 0.00 36.10 3.32
3740 3905 3.706594 CCTTCCAGAGCCTATCTAACACA 59.293 47.826 0.00 0.00 36.10 3.72
3741 3906 4.202202 CCTTCCAGAGCCTATCTAACACAG 60.202 50.000 0.00 0.00 36.10 3.66
3742 3907 4.251103 TCCAGAGCCTATCTAACACAGA 57.749 45.455 0.00 0.00 36.10 3.41
3743 3908 3.954904 TCCAGAGCCTATCTAACACAGAC 59.045 47.826 0.00 0.00 36.10 3.51
3744 3909 3.701542 CCAGAGCCTATCTAACACAGACA 59.298 47.826 0.00 0.00 36.10 3.41
3745 3910 4.343526 CCAGAGCCTATCTAACACAGACAT 59.656 45.833 0.00 0.00 36.10 3.06
3746 3911 5.536538 CCAGAGCCTATCTAACACAGACATA 59.463 44.000 0.00 0.00 36.10 2.29
3747 3912 6.442952 CAGAGCCTATCTAACACAGACATAC 58.557 44.000 0.00 0.00 36.10 2.39
3748 3913 6.039829 CAGAGCCTATCTAACACAGACATACA 59.960 42.308 0.00 0.00 36.10 2.29
3749 3914 6.039941 AGAGCCTATCTAACACAGACATACAC 59.960 42.308 0.00 0.00 36.10 2.90
3750 3915 4.976731 GCCTATCTAACACAGACATACACG 59.023 45.833 0.00 0.00 35.62 4.49
3751 3916 4.976731 CCTATCTAACACAGACATACACGC 59.023 45.833 0.00 0.00 35.62 5.34
3752 3917 2.858839 TCTAACACAGACATACACGCG 58.141 47.619 3.53 3.53 0.00 6.01
3753 3918 1.917955 CTAACACAGACATACACGCGG 59.082 52.381 12.47 1.27 0.00 6.46
3754 3919 0.315886 AACACAGACATACACGCGGA 59.684 50.000 12.47 0.00 0.00 5.54
3755 3920 0.530744 ACACAGACATACACGCGGAT 59.469 50.000 12.47 0.00 0.00 4.18
3756 3921 0.923403 CACAGACATACACGCGGATG 59.077 55.000 12.47 13.52 0.00 3.51
3757 3922 0.815095 ACAGACATACACGCGGATGA 59.185 50.000 20.37 0.24 0.00 2.92
3758 3923 1.202302 ACAGACATACACGCGGATGAG 60.202 52.381 20.37 13.19 0.00 2.90
3759 3924 0.385751 AGACATACACGCGGATGAGG 59.614 55.000 20.37 4.18 0.00 3.86
3760 3925 0.384309 GACATACACGCGGATGAGGA 59.616 55.000 20.37 0.00 0.00 3.71
3761 3926 0.102481 ACATACACGCGGATGAGGAC 59.898 55.000 20.37 0.00 0.00 3.85
3762 3927 0.102300 CATACACGCGGATGAGGACA 59.898 55.000 12.47 0.00 0.00 4.02
3763 3928 0.102481 ATACACGCGGATGAGGACAC 59.898 55.000 12.47 0.00 0.00 3.67
3764 3929 1.245376 TACACGCGGATGAGGACACA 61.245 55.000 12.47 0.00 0.00 3.72
3765 3930 1.807165 CACGCGGATGAGGACACAG 60.807 63.158 12.47 0.00 0.00 3.66
3766 3931 1.977009 ACGCGGATGAGGACACAGA 60.977 57.895 12.47 0.00 0.00 3.41
3767 3932 1.215382 CGCGGATGAGGACACAGAA 59.785 57.895 0.00 0.00 0.00 3.02
3768 3933 0.389817 CGCGGATGAGGACACAGAAA 60.390 55.000 0.00 0.00 0.00 2.52
3769 3934 1.740380 CGCGGATGAGGACACAGAAAT 60.740 52.381 0.00 0.00 0.00 2.17
3770 3935 2.481276 CGCGGATGAGGACACAGAAATA 60.481 50.000 0.00 0.00 0.00 1.40
3771 3936 3.531538 GCGGATGAGGACACAGAAATAA 58.468 45.455 0.00 0.00 0.00 1.40
3772 3937 3.938963 GCGGATGAGGACACAGAAATAAA 59.061 43.478 0.00 0.00 0.00 1.40
3773 3938 4.576463 GCGGATGAGGACACAGAAATAAAT 59.424 41.667 0.00 0.00 0.00 1.40
3774 3939 5.504665 GCGGATGAGGACACAGAAATAAATG 60.505 44.000 0.00 0.00 0.00 2.32
3775 3940 5.008019 CGGATGAGGACACAGAAATAAATGG 59.992 44.000 0.00 0.00 0.00 3.16
3776 3941 6.122277 GGATGAGGACACAGAAATAAATGGA 58.878 40.000 0.00 0.00 0.00 3.41
3777 3942 6.038714 GGATGAGGACACAGAAATAAATGGAC 59.961 42.308 0.00 0.00 0.00 4.02
3778 3943 4.935205 TGAGGACACAGAAATAAATGGACG 59.065 41.667 0.00 0.00 0.00 4.79
3779 3944 4.906618 AGGACACAGAAATAAATGGACGT 58.093 39.130 0.00 0.00 0.00 4.34
3780 3945 4.935808 AGGACACAGAAATAAATGGACGTC 59.064 41.667 7.13 7.13 0.00 4.34
3781 3946 4.201685 GGACACAGAAATAAATGGACGTCG 60.202 45.833 9.92 0.00 0.00 5.12
3782 3947 4.562082 ACACAGAAATAAATGGACGTCGA 58.438 39.130 9.92 5.99 0.00 4.20
3783 3948 5.175859 ACACAGAAATAAATGGACGTCGAT 58.824 37.500 9.92 8.58 0.00 3.59
3784 3949 5.291128 ACACAGAAATAAATGGACGTCGATC 59.709 40.000 13.75 1.07 0.00 3.69
3785 3950 4.809426 ACAGAAATAAATGGACGTCGATCC 59.191 41.667 13.75 2.97 39.45 3.36
3786 3951 4.049186 AGAAATAAATGGACGTCGATCCG 58.951 43.478 13.75 0.00 42.24 4.18
3787 3952 2.433868 ATAAATGGACGTCGATCCGG 57.566 50.000 13.75 0.00 42.24 5.14
3788 3953 1.105457 TAAATGGACGTCGATCCGGT 58.895 50.000 13.75 2.91 42.24 5.28
3789 3954 1.105457 AAATGGACGTCGATCCGGTA 58.895 50.000 13.75 0.00 42.24 4.02
3790 3955 0.383231 AATGGACGTCGATCCGGTAC 59.617 55.000 13.75 0.00 42.24 3.34
3791 3956 0.465097 ATGGACGTCGATCCGGTACT 60.465 55.000 9.92 0.00 42.24 2.73
3792 3957 1.354506 GGACGTCGATCCGGTACTG 59.645 63.158 9.92 0.00 0.00 2.74
3793 3958 1.091771 GGACGTCGATCCGGTACTGA 61.092 60.000 9.92 0.00 0.00 3.41
3794 3959 0.729116 GACGTCGATCCGGTACTGAA 59.271 55.000 2.31 0.00 0.00 3.02
3795 3960 1.131126 GACGTCGATCCGGTACTGAAA 59.869 52.381 2.31 0.00 0.00 2.69
3796 3961 1.747355 ACGTCGATCCGGTACTGAAAT 59.253 47.619 2.31 0.00 0.00 2.17
3797 3962 2.165030 ACGTCGATCCGGTACTGAAATT 59.835 45.455 2.31 0.00 0.00 1.82
3798 3963 2.534349 CGTCGATCCGGTACTGAAATTG 59.466 50.000 2.31 0.93 0.00 2.32
3799 3964 2.284417 GTCGATCCGGTACTGAAATTGC 59.716 50.000 2.31 0.00 0.00 3.56
3800 3965 2.093921 TCGATCCGGTACTGAAATTGCA 60.094 45.455 2.31 0.00 0.00 4.08
3801 3966 2.872245 CGATCCGGTACTGAAATTGCAT 59.128 45.455 2.31 0.00 0.00 3.96
3802 3967 4.055360 CGATCCGGTACTGAAATTGCATA 58.945 43.478 2.31 0.00 0.00 3.14
3803 3968 4.150627 CGATCCGGTACTGAAATTGCATAG 59.849 45.833 2.31 0.00 0.00 2.23
3804 3969 3.202906 TCCGGTACTGAAATTGCATAGC 58.797 45.455 2.31 0.00 0.00 2.97
3805 3970 2.942376 CCGGTACTGAAATTGCATAGCA 59.058 45.455 2.31 0.00 36.47 3.49
3843 4008 5.469373 TCATACTTGATGAAACGCACATC 57.531 39.130 0.00 0.00 41.80 3.06
3847 4012 1.164411 TGATGAAACGCACATCACCC 58.836 50.000 13.18 0.00 45.71 4.61
3848 4013 1.164411 GATGAAACGCACATCACCCA 58.836 50.000 10.66 0.00 42.28 4.51
3849 4014 1.539388 GATGAAACGCACATCACCCAA 59.461 47.619 10.66 0.00 42.28 4.12
3850 4015 1.614996 TGAAACGCACATCACCCAAT 58.385 45.000 0.00 0.00 0.00 3.16
3851 4016 1.959985 TGAAACGCACATCACCCAATT 59.040 42.857 0.00 0.00 0.00 2.32
3852 4017 2.030363 TGAAACGCACATCACCCAATTC 60.030 45.455 0.00 0.00 0.00 2.17
3853 4018 1.614996 AACGCACATCACCCAATTCA 58.385 45.000 0.00 0.00 0.00 2.57
3854 4019 1.838112 ACGCACATCACCCAATTCAT 58.162 45.000 0.00 0.00 0.00 2.57
3855 4020 1.473677 ACGCACATCACCCAATTCATG 59.526 47.619 0.00 0.00 0.00 3.07
3856 4021 1.744522 CGCACATCACCCAATTCATGA 59.255 47.619 0.00 0.00 0.00 3.07
3857 4022 2.359848 CGCACATCACCCAATTCATGAT 59.640 45.455 0.00 0.00 33.28 2.45
3858 4023 3.181484 CGCACATCACCCAATTCATGATT 60.181 43.478 0.00 0.00 30.58 2.57
3859 4024 4.678574 CGCACATCACCCAATTCATGATTT 60.679 41.667 0.00 0.00 30.58 2.17
3860 4025 5.450274 CGCACATCACCCAATTCATGATTTA 60.450 40.000 0.00 0.00 30.58 1.40
3861 4026 6.339730 GCACATCACCCAATTCATGATTTAA 58.660 36.000 0.00 0.00 30.58 1.52
3862 4027 6.477688 GCACATCACCCAATTCATGATTTAAG 59.522 38.462 0.00 0.00 30.58 1.85
3863 4028 7.631161 GCACATCACCCAATTCATGATTTAAGA 60.631 37.037 0.00 0.00 30.58 2.10
3864 4029 8.252417 CACATCACCCAATTCATGATTTAAGAA 58.748 33.333 0.00 0.00 30.58 2.52
3865 4030 8.253113 ACATCACCCAATTCATGATTTAAGAAC 58.747 33.333 0.00 0.00 30.58 3.01
3866 4031 7.773489 TCACCCAATTCATGATTTAAGAACA 57.227 32.000 0.00 0.00 0.00 3.18
3867 4032 8.187913 TCACCCAATTCATGATTTAAGAACAA 57.812 30.769 0.00 0.00 0.00 2.83
3868 4033 8.306038 TCACCCAATTCATGATTTAAGAACAAG 58.694 33.333 0.00 0.00 0.00 3.16
3869 4034 8.306038 CACCCAATTCATGATTTAAGAACAAGA 58.694 33.333 0.00 0.00 0.00 3.02
3870 4035 8.526147 ACCCAATTCATGATTTAAGAACAAGAG 58.474 33.333 0.00 0.00 0.00 2.85
3871 4036 8.742777 CCCAATTCATGATTTAAGAACAAGAGA 58.257 33.333 0.00 0.00 0.00 3.10
3874 4039 9.831737 AATTCATGATTTAAGAACAAGAGAACG 57.168 29.630 0.00 0.00 0.00 3.95
3875 4040 8.601845 TTCATGATTTAAGAACAAGAGAACGA 57.398 30.769 0.00 0.00 0.00 3.85
3876 4041 8.244494 TCATGATTTAAGAACAAGAGAACGAG 57.756 34.615 0.00 0.00 0.00 4.18
3877 4042 8.088365 TCATGATTTAAGAACAAGAGAACGAGA 58.912 33.333 0.00 0.00 0.00 4.04
3878 4043 8.877779 CATGATTTAAGAACAAGAGAACGAGAT 58.122 33.333 0.00 0.00 0.00 2.75
3883 4048 9.923143 TTTAAGAACAAGAGAACGAGATATTGA 57.077 29.630 0.00 0.00 0.00 2.57
3884 4049 7.820044 AAGAACAAGAGAACGAGATATTGAC 57.180 36.000 0.00 0.00 0.00 3.18
3885 4050 7.164230 AGAACAAGAGAACGAGATATTGACT 57.836 36.000 0.00 0.00 0.00 3.41
3886 4051 7.607250 AGAACAAGAGAACGAGATATTGACTT 58.393 34.615 0.00 0.00 0.00 3.01
3887 4052 8.091449 AGAACAAGAGAACGAGATATTGACTTT 58.909 33.333 0.00 0.00 0.00 2.66
3888 4053 8.608844 AACAAGAGAACGAGATATTGACTTTT 57.391 30.769 0.00 0.00 0.00 2.27
3889 4054 8.608844 ACAAGAGAACGAGATATTGACTTTTT 57.391 30.769 0.00 0.00 0.00 1.94
3914 4079 9.602568 TTTTACACTTGTAACTACATTCTCACA 57.397 29.630 1.18 0.00 39.92 3.58
3915 4080 9.772973 TTTACACTTGTAACTACATTCTCACAT 57.227 29.630 1.18 0.00 39.92 3.21
3916 4081 9.772973 TTACACTTGTAACTACATTCTCACATT 57.227 29.630 0.00 0.00 35.75 2.71
3917 4082 8.677148 ACACTTGTAACTACATTCTCACATTT 57.323 30.769 0.00 0.00 35.89 2.32
3918 4083 8.774586 ACACTTGTAACTACATTCTCACATTTC 58.225 33.333 0.00 0.00 35.89 2.17
3919 4084 8.993121 CACTTGTAACTACATTCTCACATTTCT 58.007 33.333 0.00 0.00 35.89 2.52
3920 4085 9.561069 ACTTGTAACTACATTCTCACATTTCTT 57.439 29.630 0.00 0.00 35.89 2.52
3958 4123 7.172019 TGACTTACCCTCACTTTTAACGAAATC 59.828 37.037 0.00 0.00 0.00 2.17
3974 4139 5.593010 ACGAAATCTCATACTAGTTCAGGC 58.407 41.667 0.00 0.00 0.00 4.85
4079 4244 4.729868 AGGTGAGGCTTTTACTTGTCAAT 58.270 39.130 0.00 0.00 0.00 2.57
4167 4494 3.511146 TCCTTCTCCAATGCAAATTCACC 59.489 43.478 0.00 0.00 0.00 4.02
4170 4497 3.680490 TCTCCAATGCAAATTCACCGTA 58.320 40.909 0.00 0.00 0.00 4.02
4242 4569 9.118300 GAAAATAGACTCATGAGAAACCATCAT 57.882 33.333 29.27 2.82 37.90 2.45
4263 4590 5.471797 TCATGTAATGGTGTGTTCAAATCGT 59.528 36.000 0.00 0.00 46.73 3.73
4297 4624 6.554982 AGGTCCACTATGATAAACTAGCATCA 59.445 38.462 5.12 5.12 36.10 3.07
4359 4686 3.668447 AGGCTGATATCTTAATGGTGCG 58.332 45.455 3.98 0.00 0.00 5.34
4445 4772 2.094390 GCTGTAATACCAGACCGTGTCA 60.094 50.000 6.78 0.00 34.60 3.58
4560 4932 9.832445 ATCACAACCATAATAGTTAGTTACTGG 57.168 33.333 0.00 0.00 37.73 4.00
4598 4972 2.164422 TGATGTGCCGTGTTGAACAAAA 59.836 40.909 0.00 0.00 0.00 2.44
4727 5101 1.143813 CACCCCCTCCAGCTAATGAT 58.856 55.000 0.00 0.00 0.00 2.45
4774 5151 4.965119 CCAAGTAAGTGCTATTGGGTTC 57.035 45.455 0.00 0.00 38.82 3.62
4775 5152 4.589908 CCAAGTAAGTGCTATTGGGTTCT 58.410 43.478 0.00 0.00 38.82 3.01
4913 5291 8.853077 TGTCAGACAAAAATTATCTCAGTGAT 57.147 30.769 0.00 0.00 39.11 3.06
4914 5292 9.288576 TGTCAGACAAAAATTATCTCAGTGATT 57.711 29.630 0.00 0.00 36.65 2.57
5018 5396 4.795278 GCTGTCAACTGTGAAGTTCTTTTG 59.205 41.667 4.17 2.82 34.87 2.44
5023 5401 5.705441 TCAACTGTGAAGTTCTTTTGACACT 59.295 36.000 4.17 0.00 0.00 3.55
5050 5428 4.348020 TCCTTAAGATCTGTACCCACCT 57.652 45.455 3.36 0.00 0.00 4.00
5068 5446 1.699634 CCTTGTCAGTTTCTCTGGGGA 59.300 52.381 0.00 0.00 43.76 4.81
5079 5457 7.176690 TCAGTTTCTCTGGGGATTTGTAATTTC 59.823 37.037 0.00 0.00 43.76 2.17
5232 5631 2.984562 TGCTTTGTGAGATATTCGCCA 58.015 42.857 0.00 0.00 35.38 5.69
5264 5663 5.532406 TGCCATCAGATTTCCTAGCAAATAC 59.468 40.000 0.00 0.00 0.00 1.89
5265 5664 5.767168 GCCATCAGATTTCCTAGCAAATACT 59.233 40.000 0.00 0.00 0.00 2.12
5266 5665 6.072783 GCCATCAGATTTCCTAGCAAATACTC 60.073 42.308 0.00 0.00 0.00 2.59
5267 5666 6.429385 CCATCAGATTTCCTAGCAAATACTCC 59.571 42.308 0.00 0.00 0.00 3.85
5268 5667 5.930135 TCAGATTTCCTAGCAAATACTCCC 58.070 41.667 0.00 0.00 0.00 4.30
5269 5668 5.667626 TCAGATTTCCTAGCAAATACTCCCT 59.332 40.000 0.00 0.00 0.00 4.20
5270 5669 5.994668 CAGATTTCCTAGCAAATACTCCCTC 59.005 44.000 0.00 0.00 0.00 4.30
5271 5670 4.772886 TTTCCTAGCAAATACTCCCTCC 57.227 45.455 0.00 0.00 0.00 4.30
5272 5671 2.317040 TCCTAGCAAATACTCCCTCCG 58.683 52.381 0.00 0.00 0.00 4.63
5273 5672 2.040178 CCTAGCAAATACTCCCTCCGT 58.960 52.381 0.00 0.00 0.00 4.69
5274 5673 2.434702 CCTAGCAAATACTCCCTCCGTT 59.565 50.000 0.00 0.00 0.00 4.44
5275 5674 2.693267 AGCAAATACTCCCTCCGTTC 57.307 50.000 0.00 0.00 0.00 3.95
5276 5675 1.209747 AGCAAATACTCCCTCCGTTCC 59.790 52.381 0.00 0.00 0.00 3.62
5277 5676 1.065709 GCAAATACTCCCTCCGTTCCA 60.066 52.381 0.00 0.00 0.00 3.53
5278 5677 2.617021 GCAAATACTCCCTCCGTTCCAA 60.617 50.000 0.00 0.00 0.00 3.53
5279 5678 3.681593 CAAATACTCCCTCCGTTCCAAA 58.318 45.455 0.00 0.00 0.00 3.28
5280 5679 4.076394 CAAATACTCCCTCCGTTCCAAAA 58.924 43.478 0.00 0.00 0.00 2.44
5281 5680 4.586306 AATACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
5282 5681 5.703730 AATACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
5283 5682 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5284 5683 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5285 5684 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
5286 5685 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
5287 5686 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5288 5687 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
5289 5688 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
5290 5689 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
5291 5690 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
5292 5691 3.377172 CCGTTCCAAAATAGATGACCCAC 59.623 47.826 0.00 0.00 0.00 4.61
5293 5692 4.006989 CGTTCCAAAATAGATGACCCACA 58.993 43.478 0.00 0.00 0.00 4.17
5294 5693 4.457603 CGTTCCAAAATAGATGACCCACAA 59.542 41.667 0.00 0.00 0.00 3.33
5295 5694 5.048364 CGTTCCAAAATAGATGACCCACAAA 60.048 40.000 0.00 0.00 0.00 2.83
5296 5695 6.389906 GTTCCAAAATAGATGACCCACAAAG 58.610 40.000 0.00 0.00 0.00 2.77
5297 5696 5.640147 TCCAAAATAGATGACCCACAAAGT 58.360 37.500 0.00 0.00 0.00 2.66
5298 5697 6.074648 TCCAAAATAGATGACCCACAAAGTT 58.925 36.000 0.00 0.00 0.00 2.66
5299 5698 7.235079 TCCAAAATAGATGACCCACAAAGTTA 58.765 34.615 0.00 0.00 0.00 2.24
5300 5699 7.393234 TCCAAAATAGATGACCCACAAAGTTAG 59.607 37.037 0.00 0.00 0.00 2.34
5301 5700 7.176690 CCAAAATAGATGACCCACAAAGTTAGT 59.823 37.037 0.00 0.00 0.00 2.24
5302 5701 9.226606 CAAAATAGATGACCCACAAAGTTAGTA 57.773 33.333 0.00 0.00 0.00 1.82
5303 5702 8.788325 AAATAGATGACCCACAAAGTTAGTAC 57.212 34.615 0.00 0.00 0.00 2.73
5304 5703 5.818678 AGATGACCCACAAAGTTAGTACA 57.181 39.130 0.00 0.00 0.00 2.90
5305 5704 6.182507 AGATGACCCACAAAGTTAGTACAA 57.817 37.500 0.00 0.00 0.00 2.41
5306 5705 6.597562 AGATGACCCACAAAGTTAGTACAAA 58.402 36.000 0.00 0.00 0.00 2.83
5307 5706 6.710744 AGATGACCCACAAAGTTAGTACAAAG 59.289 38.462 0.00 0.00 0.00 2.77
5308 5707 5.747342 TGACCCACAAAGTTAGTACAAAGT 58.253 37.500 0.00 0.00 0.00 2.66
5309 5708 6.181908 TGACCCACAAAGTTAGTACAAAGTT 58.818 36.000 0.00 0.00 0.00 2.66
5310 5709 6.094325 TGACCCACAAAGTTAGTACAAAGTTG 59.906 38.462 0.00 0.00 0.00 3.16
5311 5710 6.181908 ACCCACAAAGTTAGTACAAAGTTGA 58.818 36.000 0.00 0.00 0.00 3.18
5312 5711 6.317893 ACCCACAAAGTTAGTACAAAGTTGAG 59.682 38.462 0.00 0.00 0.00 3.02
5313 5712 6.317893 CCCACAAAGTTAGTACAAAGTTGAGT 59.682 38.462 0.00 0.00 0.00 3.41
5314 5713 7.407337 CCACAAAGTTAGTACAAAGTTGAGTC 58.593 38.462 0.00 0.00 0.00 3.36
5315 5714 7.065324 CCACAAAGTTAGTACAAAGTTGAGTCA 59.935 37.037 0.00 0.00 0.00 3.41
5316 5715 8.612619 CACAAAGTTAGTACAAAGTTGAGTCAT 58.387 33.333 0.00 0.00 0.00 3.06
5317 5716 8.827677 ACAAAGTTAGTACAAAGTTGAGTCATC 58.172 33.333 0.00 0.00 0.00 2.92
5318 5717 9.046296 CAAAGTTAGTACAAAGTTGAGTCATCT 57.954 33.333 0.00 0.00 0.00 2.90
5325 5724 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
5326 5725 7.219484 ACAAAGTTGAGTCATCTATTTTGGG 57.781 36.000 14.35 1.71 40.00 4.12
5327 5726 7.004086 ACAAAGTTGAGTCATCTATTTTGGGA 58.996 34.615 14.35 0.00 40.00 4.37
5328 5727 7.040409 ACAAAGTTGAGTCATCTATTTTGGGAC 60.040 37.037 14.35 0.00 40.00 4.46
5329 5728 5.178797 AGTTGAGTCATCTATTTTGGGACG 58.821 41.667 1.70 0.00 33.84 4.79
5330 5729 4.137116 TGAGTCATCTATTTTGGGACGG 57.863 45.455 0.00 0.00 33.84 4.79
5331 5730 3.772572 TGAGTCATCTATTTTGGGACGGA 59.227 43.478 0.00 0.00 33.84 4.69
5332 5731 4.141937 TGAGTCATCTATTTTGGGACGGAG 60.142 45.833 0.00 0.00 33.84 4.63
5333 5732 3.134804 AGTCATCTATTTTGGGACGGAGG 59.865 47.826 0.00 0.00 33.84 4.30
5334 5733 2.438021 TCATCTATTTTGGGACGGAGGG 59.562 50.000 0.00 0.00 0.00 4.30
5335 5734 2.257391 TCTATTTTGGGACGGAGGGA 57.743 50.000 0.00 0.00 0.00 4.20
5336 5735 2.116238 TCTATTTTGGGACGGAGGGAG 58.884 52.381 0.00 0.00 0.00 4.30
5337 5736 1.838077 CTATTTTGGGACGGAGGGAGT 59.162 52.381 0.00 0.00 0.00 3.85
5338 5737 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
5362 5761 2.239402 TGGGAATGCTCATCTGCAGTTA 59.761 45.455 14.67 0.00 46.71 2.24
5387 5786 5.221402 TGCACTATTGTGGAATTTTGCTTGA 60.221 36.000 9.35 0.00 41.50 3.02
5428 5827 2.026945 CTTGGCCCTGGTTTGCGTTT 62.027 55.000 0.00 0.00 0.00 3.60
5430 5829 2.791868 GGCCCTGGTTTGCGTTTGT 61.792 57.895 0.00 0.00 0.00 2.83
5481 5880 1.738350 CTGGCTGCTGAAACTGATGAG 59.262 52.381 0.00 0.00 0.00 2.90
5501 5900 4.263639 TGAGGCTGTCCATTTCTTCAGATT 60.264 41.667 0.00 0.00 33.74 2.40
5505 5904 5.591877 GGCTGTCCATTTCTTCAGATTACAT 59.408 40.000 0.00 0.00 0.00 2.29
5585 5987 4.261909 GCTTTGCCCCATCTCATTGATTAG 60.262 45.833 0.00 0.00 32.05 1.73
5596 5998 9.745880 CCATCTCATTGATTAGGAAAGAATTTG 57.254 33.333 0.00 0.00 33.18 2.32
5625 6027 5.903810 AGTTACAAGAGAACAAACTCTCGT 58.096 37.500 0.00 0.00 45.08 4.18
5656 6060 3.717400 TTCTACTCTCGTGGCATGATC 57.283 47.619 10.32 0.00 0.00 2.92
5657 6061 2.654863 TCTACTCTCGTGGCATGATCA 58.345 47.619 10.32 0.00 0.00 2.92
5658 6062 3.023832 TCTACTCTCGTGGCATGATCAA 58.976 45.455 10.32 0.00 0.00 2.57
5659 6063 2.768253 ACTCTCGTGGCATGATCAAA 57.232 45.000 10.32 0.00 0.00 2.69
5660 6064 2.625737 ACTCTCGTGGCATGATCAAAG 58.374 47.619 10.32 8.17 0.00 2.77
5661 6065 2.027745 ACTCTCGTGGCATGATCAAAGT 60.028 45.455 10.32 8.76 0.00 2.66
5662 6066 3.005554 CTCTCGTGGCATGATCAAAGTT 58.994 45.455 10.32 0.00 0.00 2.66
5663 6067 3.411446 TCTCGTGGCATGATCAAAGTTT 58.589 40.909 10.32 0.00 0.00 2.66
5664 6068 3.189080 TCTCGTGGCATGATCAAAGTTTG 59.811 43.478 10.32 9.44 0.00 2.93
5665 6069 2.884012 TCGTGGCATGATCAAAGTTTGT 59.116 40.909 15.08 3.21 0.00 2.83
5666 6070 3.058293 TCGTGGCATGATCAAAGTTTGTC 60.058 43.478 15.08 11.99 0.00 3.18
5667 6071 3.058016 CGTGGCATGATCAAAGTTTGTCT 60.058 43.478 15.08 4.52 0.00 3.41
5668 6072 4.557296 CGTGGCATGATCAAAGTTTGTCTT 60.557 41.667 15.08 7.79 38.10 3.01
5669 6073 5.291971 GTGGCATGATCAAAGTTTGTCTTT 58.708 37.500 15.08 0.00 45.96 2.52
5670 6074 5.754890 GTGGCATGATCAAAGTTTGTCTTTT 59.245 36.000 15.08 0.00 42.95 2.27
5671 6075 5.754406 TGGCATGATCAAAGTTTGTCTTTTG 59.246 36.000 15.08 9.01 42.95 2.44
5672 6076 5.984926 GGCATGATCAAAGTTTGTCTTTTGA 59.015 36.000 15.08 2.58 42.95 2.69
5673 6077 6.145048 GGCATGATCAAAGTTTGTCTTTTGAG 59.855 38.462 15.08 1.70 42.95 3.02
5674 6078 6.145048 GCATGATCAAAGTTTGTCTTTTGAGG 59.855 38.462 15.08 0.84 42.95 3.86
5675 6079 7.428020 CATGATCAAAGTTTGTCTTTTGAGGA 58.572 34.615 15.08 0.00 42.95 3.71
5676 6080 7.587037 TGATCAAAGTTTGTCTTTTGAGGAT 57.413 32.000 15.08 0.00 42.95 3.24
5677 6081 7.651808 TGATCAAAGTTTGTCTTTTGAGGATC 58.348 34.615 15.08 7.40 42.95 3.36
5678 6082 7.503566 TGATCAAAGTTTGTCTTTTGAGGATCT 59.496 33.333 15.08 0.00 42.95 2.75
5679 6083 7.031226 TCAAAGTTTGTCTTTTGAGGATCTG 57.969 36.000 15.08 0.00 42.95 2.90
5680 6084 6.039717 TCAAAGTTTGTCTTTTGAGGATCTGG 59.960 38.462 15.08 0.00 42.95 3.86
5681 6085 3.823304 AGTTTGTCTTTTGAGGATCTGGC 59.177 43.478 0.00 0.00 34.92 4.85
5682 6086 3.507162 TTGTCTTTTGAGGATCTGGCA 57.493 42.857 0.00 0.00 34.92 4.92
5683 6087 3.726557 TGTCTTTTGAGGATCTGGCAT 57.273 42.857 0.00 0.00 34.92 4.40
5684 6088 3.349927 TGTCTTTTGAGGATCTGGCATG 58.650 45.455 0.00 0.00 34.92 4.06
5685 6089 3.009363 TGTCTTTTGAGGATCTGGCATGA 59.991 43.478 0.00 0.00 34.92 3.07
5686 6090 4.205587 GTCTTTTGAGGATCTGGCATGAT 58.794 43.478 0.00 0.00 34.92 2.45
5743 6147 7.363181 CCACAAGGCTGATTCATCTTTGATTTA 60.363 37.037 16.33 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 98 7.540299 TGTAAACAAAACTCGAAAAGTGGAAT 58.460 30.769 0.00 0.00 38.58 3.01
327 335 2.159824 TCGACGAAACTAGCAGAGTGAG 59.840 50.000 0.00 0.00 38.87 3.51
382 390 2.169352 AGACACCTGCTGATAGCGAATT 59.831 45.455 0.00 0.00 46.26 2.17
391 399 1.905637 TCGAACTAGACACCTGCTGA 58.094 50.000 0.00 0.00 0.00 4.26
400 408 3.109619 CAAGCTCGGATTCGAACTAGAC 58.890 50.000 0.00 0.00 45.47 2.59
468 477 2.823154 CCCGGCCTATTTTGAGTTGAAA 59.177 45.455 0.00 0.00 0.00 2.69
561 575 0.616111 ATCTTCAGACAGCCCCGACT 60.616 55.000 0.00 0.00 0.00 4.18
562 576 0.179097 GATCTTCAGACAGCCCCGAC 60.179 60.000 0.00 0.00 0.00 4.79
563 577 0.324738 AGATCTTCAGACAGCCCCGA 60.325 55.000 0.00 0.00 0.00 5.14
564 578 0.539051 AAGATCTTCAGACAGCCCCG 59.461 55.000 0.88 0.00 0.00 5.73
565 579 1.836802 AGAAGATCTTCAGACAGCCCC 59.163 52.381 31.79 6.78 41.84 5.80
566 580 2.499289 TGAGAAGATCTTCAGACAGCCC 59.501 50.000 31.79 13.44 41.84 5.19
567 581 3.883830 TGAGAAGATCTTCAGACAGCC 57.116 47.619 31.79 14.56 41.84 4.85
568 582 6.551385 TTTTTGAGAAGATCTTCAGACAGC 57.449 37.500 31.79 16.22 41.84 4.40
701 715 0.179040 GGACACGTGGTGAAGGGAAA 60.179 55.000 21.57 0.00 36.96 3.13
716 730 3.702048 GCACTAGGGGCGTGGACA 61.702 66.667 0.00 0.00 33.10 4.02
730 744 1.363744 CTGAACTCCGGAGAATGCAC 58.636 55.000 37.69 19.45 0.00 4.57
746 760 2.310779 AAGTGGAGACAGTAGGCTGA 57.689 50.000 0.00 0.00 45.37 4.26
937 951 0.461870 TCGTCAAATCCATGGAGCGG 60.462 55.000 21.33 11.47 0.00 5.52
986 1000 1.959899 GAACATGACGTCCTGCTGCG 61.960 60.000 19.18 0.00 0.00 5.18
998 1012 0.327924 ATTCGGCTGTGGGAACATGA 59.672 50.000 0.00 0.00 46.14 3.07
1100 1117 4.711949 AAGGGAGCTGCTGGTGCG 62.712 66.667 7.01 0.00 43.34 5.34
1241 1273 3.583966 ACGGTCATAACTACCTTTGGGAA 59.416 43.478 0.00 0.00 34.66 3.97
1288 1321 6.051074 GCCAATCCAAATCCTTTATTTCAGG 58.949 40.000 0.00 0.00 35.54 3.86
1414 1447 1.515020 CCTGCCTGGAGAAGAGACG 59.485 63.158 0.00 0.00 38.35 4.18
1447 1480 4.139786 TCTTGATTTCACTTGCAAGCTCT 58.860 39.130 26.27 4.09 38.05 4.09
1453 1486 4.766373 TGGCTAATCTTGATTTCACTTGCA 59.234 37.500 0.95 0.00 0.00 4.08
1510 1543 7.118825 TGCTGAAGTTGAGAACAGAGATAATTG 59.881 37.037 0.00 0.00 32.90 2.32
1579 1612 0.602562 TTGCCGATTTTTCTGCCCAG 59.397 50.000 0.00 0.00 0.00 4.45
1715 1748 9.462174 TGAACATTTTCACAAAGATATGAACAC 57.538 29.630 0.00 0.00 36.79 3.32
1763 1796 4.527816 GGGAAGCCATGCATTTATTGGATA 59.472 41.667 7.48 0.00 34.15 2.59
1780 1813 4.036144 GCACAATATCAAGAGAAGGGAAGC 59.964 45.833 0.00 0.00 0.00 3.86
1797 1830 1.985473 TCTGCACTTTCCTGCACAAT 58.015 45.000 0.00 0.00 42.36 2.71
1808 1841 4.883585 TCAACTCTGTCAAATTCTGCACTT 59.116 37.500 0.00 0.00 0.00 3.16
1904 1937 5.733620 ATGAGTGAAATGGCAGTTTCAAT 57.266 34.783 19.48 18.88 46.31 2.57
1909 1951 4.574674 TCCTATGAGTGAAATGGCAGTT 57.425 40.909 0.00 0.00 0.00 3.16
1976 2018 6.582295 GGTTTGTACATACAACAATGAGCTTG 59.418 38.462 16.74 0.00 45.01 4.01
1977 2019 6.264292 TGGTTTGTACATACAACAATGAGCTT 59.736 34.615 16.74 0.00 45.01 3.74
1979 2021 6.007936 TGGTTTGTACATACAACAATGAGC 57.992 37.500 16.74 0.80 45.01 4.26
2161 2205 8.296713 TCCAAAACTCAGAAAGTATTAACATGC 58.703 33.333 0.00 0.00 37.17 4.06
2174 2218 6.655003 CAGCTAAACCTATCCAAAACTCAGAA 59.345 38.462 0.00 0.00 0.00 3.02
2215 2259 9.014297 AGAGAAAGATCGGAAAATAACAATTGT 57.986 29.630 4.92 4.92 0.00 2.71
2230 2274 5.757320 ACATAAGGCATCAAGAGAAAGATCG 59.243 40.000 0.00 0.00 0.00 3.69
2231 2275 7.565323 AACATAAGGCATCAAGAGAAAGATC 57.435 36.000 0.00 0.00 0.00 2.75
2233 2277 7.765695 AAAACATAAGGCATCAAGAGAAAGA 57.234 32.000 0.00 0.00 0.00 2.52
2278 2322 7.867403 GGCAACTTCAACAAATCTTCAAGATAA 59.133 33.333 0.00 0.00 32.89 1.75
2279 2323 7.014134 TGGCAACTTCAACAAATCTTCAAGATA 59.986 33.333 0.00 0.00 32.72 1.98
2320 2364 1.168714 GAAGTTGGGATGCACTCCAC 58.831 55.000 9.14 5.74 46.98 4.02
2321 2365 1.067295 AGAAGTTGGGATGCACTCCA 58.933 50.000 14.57 10.73 46.98 3.86
2330 2374 4.202556 TGGAATCAATCACAGAAGTTGGGA 60.203 41.667 0.00 0.00 45.03 4.37
2344 2388 5.263599 TCAAGCAAGGTACATGGAATCAAT 58.736 37.500 0.00 0.00 0.00 2.57
2392 2436 8.220755 ACAACTCAAGAATTTGTAAACTGCTA 57.779 30.769 0.00 0.00 35.73 3.49
2401 2445 8.050778 TCTACACAAACAACTCAAGAATTTGT 57.949 30.769 0.00 0.00 42.63 2.83
2402 2446 9.520204 AATCTACACAAACAACTCAAGAATTTG 57.480 29.630 0.00 0.00 36.54 2.32
2617 2669 3.712187 CTGATTACGGAAGAAGGAGAGC 58.288 50.000 0.00 0.00 0.00 4.09
2621 2673 2.093658 GTGGCTGATTACGGAAGAAGGA 60.094 50.000 0.00 0.00 0.00 3.36
2626 2678 2.609459 GTCATGTGGCTGATTACGGAAG 59.391 50.000 0.00 0.00 0.00 3.46
2632 2684 4.263462 GGATATGGGTCATGTGGCTGATTA 60.263 45.833 0.00 0.00 0.00 1.75
2635 2687 1.421268 GGATATGGGTCATGTGGCTGA 59.579 52.381 0.00 0.00 0.00 4.26
2642 2694 2.237143 AGCATACGGGATATGGGTCATG 59.763 50.000 0.00 0.00 41.07 3.07
2657 2709 4.046938 TCGAGATGTCCTTCAAGCATAC 57.953 45.455 0.00 0.00 0.00 2.39
2665 2717 4.748892 TGACTGATTTCGAGATGTCCTTC 58.251 43.478 0.00 0.00 0.00 3.46
2675 2727 5.175859 GGTCCAACTAATGACTGATTTCGA 58.824 41.667 0.00 0.00 0.00 3.71
2676 2728 4.935205 TGGTCCAACTAATGACTGATTTCG 59.065 41.667 0.00 0.00 0.00 3.46
2681 2733 5.762179 AGAATGGTCCAACTAATGACTGA 57.238 39.130 0.00 0.00 0.00 3.41
2972 3031 4.339247 TGCAATAGCCAGAATAAAGAAGGC 59.661 41.667 0.00 0.00 45.54 4.35
2976 3035 4.644685 GGGTTGCAATAGCCAGAATAAAGA 59.355 41.667 0.59 0.00 41.13 2.52
3030 3089 8.537728 TGGCAGAAAATGACCTGAAATATAAT 57.462 30.769 0.00 0.00 35.23 1.28
3130 3189 1.699656 CCTTCGCAGCATCAGTTCGG 61.700 60.000 0.00 0.00 0.00 4.30
3191 3250 4.397417 GCCATCTTCTTGAGCAGTTGTATT 59.603 41.667 0.00 0.00 0.00 1.89
3241 3300 0.676151 CTCCTTGGTTCTGCTCTGGC 60.676 60.000 0.00 0.00 39.26 4.85
3315 3374 5.880887 GGACCTTTTATCTCGACCTTTTGAT 59.119 40.000 0.00 0.00 0.00 2.57
3337 3396 1.833630 AGAGATTCGGAATGCACAGGA 59.166 47.619 8.18 0.00 0.00 3.86
3342 3401 1.554617 TGGTCAGAGATTCGGAATGCA 59.445 47.619 8.18 0.00 0.00 3.96
3524 3688 4.142038 ACATCCAGTAAAACCCAACAGAC 58.858 43.478 0.00 0.00 0.00 3.51
3603 3768 5.978814 TCTCCTACTTTCCTTTCACATAGC 58.021 41.667 0.00 0.00 0.00 2.97
3674 3839 7.046292 AGGGCACGTTACTTTTATTCTTTTT 57.954 32.000 0.00 0.00 0.00 1.94
3676 3841 6.149973 GGTAGGGCACGTTACTTTTATTCTTT 59.850 38.462 0.00 0.00 0.00 2.52
3677 3842 5.645067 GGTAGGGCACGTTACTTTTATTCTT 59.355 40.000 0.00 0.00 0.00 2.52
3678 3843 5.046087 AGGTAGGGCACGTTACTTTTATTCT 60.046 40.000 0.00 0.00 0.00 2.40
3679 3844 5.064325 CAGGTAGGGCACGTTACTTTTATTC 59.936 44.000 0.00 0.00 0.00 1.75
3680 3845 4.939439 CAGGTAGGGCACGTTACTTTTATT 59.061 41.667 0.00 0.00 0.00 1.40
3681 3846 4.019950 ACAGGTAGGGCACGTTACTTTTAT 60.020 41.667 0.00 0.00 0.00 1.40
3682 3847 3.324556 ACAGGTAGGGCACGTTACTTTTA 59.675 43.478 0.00 0.00 0.00 1.52
3683 3848 2.105306 ACAGGTAGGGCACGTTACTTTT 59.895 45.455 0.00 0.00 0.00 2.27
3684 3849 1.695788 ACAGGTAGGGCACGTTACTTT 59.304 47.619 0.00 0.00 0.00 2.66
3685 3850 1.345063 ACAGGTAGGGCACGTTACTT 58.655 50.000 0.00 0.00 0.00 2.24
3686 3851 1.345063 AACAGGTAGGGCACGTTACT 58.655 50.000 0.00 0.00 0.00 2.24
3687 3852 2.232208 ACTAACAGGTAGGGCACGTTAC 59.768 50.000 0.00 0.00 33.68 2.50
3688 3853 2.528564 ACTAACAGGTAGGGCACGTTA 58.471 47.619 0.00 0.00 33.68 3.18
3689 3854 1.345063 ACTAACAGGTAGGGCACGTT 58.655 50.000 0.00 0.00 33.68 3.99
3690 3855 2.220653 TACTAACAGGTAGGGCACGT 57.779 50.000 0.00 0.00 33.68 4.49
3691 3856 3.056322 ACTTTACTAACAGGTAGGGCACG 60.056 47.826 0.00 0.00 33.68 5.34
3692 3857 4.548451 ACTTTACTAACAGGTAGGGCAC 57.452 45.455 0.00 0.00 33.68 5.01
3693 3858 5.188359 CCTTACTTTACTAACAGGTAGGGCA 59.812 44.000 0.00 0.00 33.68 5.36
3694 3859 5.668471 CCTTACTTTACTAACAGGTAGGGC 58.332 45.833 0.00 0.00 33.68 5.19
3695 3860 5.396101 GGCCTTACTTTACTAACAGGTAGGG 60.396 48.000 0.00 0.00 33.68 3.53
3696 3861 5.424573 AGGCCTTACTTTACTAACAGGTAGG 59.575 44.000 0.00 0.00 33.68 3.18
3697 3862 6.541934 AGGCCTTACTTTACTAACAGGTAG 57.458 41.667 0.00 0.00 35.75 3.18
3698 3863 6.070596 GGAAGGCCTTACTTTACTAACAGGTA 60.071 42.308 21.43 0.00 0.00 3.08
3699 3864 5.280368 GGAAGGCCTTACTTTACTAACAGGT 60.280 44.000 21.43 0.00 0.00 4.00
3700 3865 5.183969 GGAAGGCCTTACTTTACTAACAGG 58.816 45.833 21.43 0.00 0.00 4.00
3701 3866 5.801380 TGGAAGGCCTTACTTTACTAACAG 58.199 41.667 28.16 0.00 34.31 3.16
3702 3867 5.544948 TCTGGAAGGCCTTACTTTACTAACA 59.455 40.000 28.16 3.81 34.31 2.41
3703 3868 6.046290 TCTGGAAGGCCTTACTTTACTAAC 57.954 41.667 28.16 7.10 34.31 2.34
3704 3869 5.338137 GCTCTGGAAGGCCTTACTTTACTAA 60.338 44.000 28.16 5.35 34.31 2.24
3705 3870 4.161754 GCTCTGGAAGGCCTTACTTTACTA 59.838 45.833 28.16 6.12 34.31 1.82
3706 3871 3.055021 GCTCTGGAAGGCCTTACTTTACT 60.055 47.826 28.16 0.00 34.31 2.24
3707 3872 3.271729 GCTCTGGAAGGCCTTACTTTAC 58.728 50.000 28.16 11.92 34.31 2.01
3708 3873 2.238898 GGCTCTGGAAGGCCTTACTTTA 59.761 50.000 28.16 12.48 44.00 1.85
3709 3874 1.004862 GGCTCTGGAAGGCCTTACTTT 59.995 52.381 28.16 0.25 44.00 2.66
3710 3875 0.621082 GGCTCTGGAAGGCCTTACTT 59.379 55.000 28.16 0.72 44.00 2.24
3711 3876 2.302019 GGCTCTGGAAGGCCTTACT 58.698 57.895 28.16 1.18 44.00 2.24
3712 3877 4.966123 GGCTCTGGAAGGCCTTAC 57.034 61.111 21.92 21.92 44.00 2.34
3718 3883 3.706594 TGTGTTAGATAGGCTCTGGAAGG 59.293 47.826 0.00 0.00 35.28 3.46
3719 3884 4.646945 TCTGTGTTAGATAGGCTCTGGAAG 59.353 45.833 0.00 0.00 35.28 3.46
3720 3885 4.402793 GTCTGTGTTAGATAGGCTCTGGAA 59.597 45.833 0.00 0.00 37.83 3.53
3721 3886 3.954904 GTCTGTGTTAGATAGGCTCTGGA 59.045 47.826 0.00 0.00 37.83 3.86
3722 3887 3.701542 TGTCTGTGTTAGATAGGCTCTGG 59.298 47.826 0.00 0.00 37.83 3.86
3723 3888 4.991153 TGTCTGTGTTAGATAGGCTCTG 57.009 45.455 0.00 0.00 37.83 3.35
3724 3889 6.039941 GTGTATGTCTGTGTTAGATAGGCTCT 59.960 42.308 0.00 0.00 37.83 4.09
3725 3890 6.210078 GTGTATGTCTGTGTTAGATAGGCTC 58.790 44.000 0.00 0.00 37.83 4.70
3726 3891 5.221067 CGTGTATGTCTGTGTTAGATAGGCT 60.221 44.000 0.00 0.00 37.83 4.58
3727 3892 4.976731 CGTGTATGTCTGTGTTAGATAGGC 59.023 45.833 0.00 0.00 37.83 3.93
3728 3893 4.976731 GCGTGTATGTCTGTGTTAGATAGG 59.023 45.833 0.00 0.00 37.83 2.57
3729 3894 4.671068 CGCGTGTATGTCTGTGTTAGATAG 59.329 45.833 0.00 0.00 37.83 2.08
3730 3895 4.496840 CCGCGTGTATGTCTGTGTTAGATA 60.497 45.833 4.92 0.00 37.83 1.98
3731 3896 3.435566 CGCGTGTATGTCTGTGTTAGAT 58.564 45.455 0.00 0.00 37.83 1.98
3732 3897 2.414957 CCGCGTGTATGTCTGTGTTAGA 60.415 50.000 4.92 0.00 0.00 2.10
3733 3898 1.917955 CCGCGTGTATGTCTGTGTTAG 59.082 52.381 4.92 0.00 0.00 2.34
3734 3899 1.540707 TCCGCGTGTATGTCTGTGTTA 59.459 47.619 4.92 0.00 0.00 2.41
3735 3900 0.315886 TCCGCGTGTATGTCTGTGTT 59.684 50.000 4.92 0.00 0.00 3.32
3736 3901 0.530744 ATCCGCGTGTATGTCTGTGT 59.469 50.000 4.92 0.00 0.00 3.72
3737 3902 0.923403 CATCCGCGTGTATGTCTGTG 59.077 55.000 4.92 0.00 0.00 3.66
3738 3903 0.815095 TCATCCGCGTGTATGTCTGT 59.185 50.000 4.92 0.00 0.00 3.41
3739 3904 1.481240 CTCATCCGCGTGTATGTCTG 58.519 55.000 4.92 0.00 0.00 3.51
3740 3905 0.385751 CCTCATCCGCGTGTATGTCT 59.614 55.000 4.92 0.00 0.00 3.41
3741 3906 0.384309 TCCTCATCCGCGTGTATGTC 59.616 55.000 4.92 0.00 0.00 3.06
3742 3907 0.102481 GTCCTCATCCGCGTGTATGT 59.898 55.000 4.92 0.00 0.00 2.29
3743 3908 0.102300 TGTCCTCATCCGCGTGTATG 59.898 55.000 4.92 6.17 0.00 2.39
3744 3909 0.102481 GTGTCCTCATCCGCGTGTAT 59.898 55.000 4.92 0.00 0.00 2.29
3745 3910 1.245376 TGTGTCCTCATCCGCGTGTA 61.245 55.000 4.92 0.00 0.00 2.90
3746 3911 2.261671 GTGTCCTCATCCGCGTGT 59.738 61.111 4.92 0.00 0.00 4.49
3747 3912 1.807165 CTGTGTCCTCATCCGCGTG 60.807 63.158 4.92 0.00 0.00 5.34
3748 3913 1.532604 TTCTGTGTCCTCATCCGCGT 61.533 55.000 4.92 0.00 0.00 6.01
3749 3914 0.389817 TTTCTGTGTCCTCATCCGCG 60.390 55.000 0.00 0.00 0.00 6.46
3750 3915 2.029838 ATTTCTGTGTCCTCATCCGC 57.970 50.000 0.00 0.00 0.00 5.54
3751 3916 5.008019 CCATTTATTTCTGTGTCCTCATCCG 59.992 44.000 0.00 0.00 0.00 4.18
3752 3917 6.038714 GTCCATTTATTTCTGTGTCCTCATCC 59.961 42.308 0.00 0.00 0.00 3.51
3753 3918 6.238211 CGTCCATTTATTTCTGTGTCCTCATC 60.238 42.308 0.00 0.00 0.00 2.92
3754 3919 5.586243 CGTCCATTTATTTCTGTGTCCTCAT 59.414 40.000 0.00 0.00 0.00 2.90
3755 3920 4.935205 CGTCCATTTATTTCTGTGTCCTCA 59.065 41.667 0.00 0.00 0.00 3.86
3756 3921 4.935808 ACGTCCATTTATTTCTGTGTCCTC 59.064 41.667 0.00 0.00 0.00 3.71
3757 3922 4.906618 ACGTCCATTTATTTCTGTGTCCT 58.093 39.130 0.00 0.00 0.00 3.85
3758 3923 4.201685 CGACGTCCATTTATTTCTGTGTCC 60.202 45.833 10.58 0.00 0.00 4.02
3759 3924 4.624024 TCGACGTCCATTTATTTCTGTGTC 59.376 41.667 10.58 0.00 0.00 3.67
3760 3925 4.562082 TCGACGTCCATTTATTTCTGTGT 58.438 39.130 10.58 0.00 0.00 3.72
3761 3926 5.276868 GGATCGACGTCCATTTATTTCTGTG 60.277 44.000 10.58 0.00 38.20 3.66
3762 3927 4.809426 GGATCGACGTCCATTTATTTCTGT 59.191 41.667 10.58 0.00 38.20 3.41
3763 3928 4.085055 CGGATCGACGTCCATTTATTTCTG 60.085 45.833 10.58 0.00 38.21 3.02
3764 3929 4.049186 CGGATCGACGTCCATTTATTTCT 58.951 43.478 10.58 0.00 38.21 2.52
3765 3930 3.183775 CCGGATCGACGTCCATTTATTTC 59.816 47.826 10.58 0.00 38.21 2.17
3766 3931 3.128349 CCGGATCGACGTCCATTTATTT 58.872 45.455 10.58 0.00 38.21 1.40
3767 3932 2.101917 ACCGGATCGACGTCCATTTATT 59.898 45.455 9.46 0.00 38.21 1.40
3768 3933 1.684983 ACCGGATCGACGTCCATTTAT 59.315 47.619 9.46 0.00 38.21 1.40
3769 3934 1.105457 ACCGGATCGACGTCCATTTA 58.895 50.000 9.46 0.00 38.21 1.40
3770 3935 1.105457 TACCGGATCGACGTCCATTT 58.895 50.000 9.46 0.00 38.21 2.32
3771 3936 0.383231 GTACCGGATCGACGTCCATT 59.617 55.000 9.46 0.00 38.21 3.16
3772 3937 0.465097 AGTACCGGATCGACGTCCAT 60.465 55.000 9.46 1.67 38.21 3.41
3773 3938 1.078214 AGTACCGGATCGACGTCCA 60.078 57.895 9.46 0.00 38.21 4.02
3774 3939 1.091771 TCAGTACCGGATCGACGTCC 61.092 60.000 9.46 0.50 34.82 4.79
3775 3940 0.729116 TTCAGTACCGGATCGACGTC 59.271 55.000 9.46 5.18 0.00 4.34
3776 3941 1.167851 TTTCAGTACCGGATCGACGT 58.832 50.000 9.46 0.00 0.00 4.34
3777 3942 2.486951 ATTTCAGTACCGGATCGACG 57.513 50.000 9.46 0.00 0.00 5.12
3778 3943 2.284417 GCAATTTCAGTACCGGATCGAC 59.716 50.000 9.46 0.00 0.00 4.20
3779 3944 2.093921 TGCAATTTCAGTACCGGATCGA 60.094 45.455 9.46 0.00 0.00 3.59
3780 3945 2.276201 TGCAATTTCAGTACCGGATCG 58.724 47.619 9.46 0.00 0.00 3.69
3781 3946 4.083802 GCTATGCAATTTCAGTACCGGATC 60.084 45.833 9.46 0.00 0.00 3.36
3782 3947 3.815401 GCTATGCAATTTCAGTACCGGAT 59.185 43.478 9.46 0.00 0.00 4.18
3783 3948 3.202906 GCTATGCAATTTCAGTACCGGA 58.797 45.455 9.46 0.00 0.00 5.14
3784 3949 2.942376 TGCTATGCAATTTCAGTACCGG 59.058 45.455 0.00 0.00 34.76 5.28
3785 3950 4.614555 TTGCTATGCAATTTCAGTACCG 57.385 40.909 0.45 0.00 43.99 4.02
3821 3986 4.934602 TGATGTGCGTTTCATCAAGTATGA 59.065 37.500 13.65 0.00 45.40 2.15
3822 3987 5.220557 TGATGTGCGTTTCATCAAGTATG 57.779 39.130 13.65 0.00 45.40 2.39
3828 3993 1.164411 GGGTGATGTGCGTTTCATCA 58.836 50.000 12.57 12.57 45.93 3.07
3829 3994 1.164411 TGGGTGATGTGCGTTTCATC 58.836 50.000 8.76 8.76 41.16 2.92
3830 3995 1.614996 TTGGGTGATGTGCGTTTCAT 58.385 45.000 0.00 0.00 0.00 2.57
3831 3996 1.614996 ATTGGGTGATGTGCGTTTCA 58.385 45.000 0.00 0.00 0.00 2.69
3832 3997 2.030363 TGAATTGGGTGATGTGCGTTTC 60.030 45.455 0.00 0.00 0.00 2.78
3833 3998 1.959985 TGAATTGGGTGATGTGCGTTT 59.040 42.857 0.00 0.00 0.00 3.60
3834 3999 1.614996 TGAATTGGGTGATGTGCGTT 58.385 45.000 0.00 0.00 0.00 4.84
3835 4000 1.473677 CATGAATTGGGTGATGTGCGT 59.526 47.619 0.00 0.00 0.00 5.24
3836 4001 1.744522 TCATGAATTGGGTGATGTGCG 59.255 47.619 0.00 0.00 0.00 5.34
3837 4002 4.395959 AATCATGAATTGGGTGATGTGC 57.604 40.909 0.00 0.00 33.19 4.57
3838 4003 7.774134 TCTTAAATCATGAATTGGGTGATGTG 58.226 34.615 6.26 0.00 33.19 3.21
3839 4004 7.959658 TCTTAAATCATGAATTGGGTGATGT 57.040 32.000 6.26 0.00 33.19 3.06
3840 4005 8.252417 TGTTCTTAAATCATGAATTGGGTGATG 58.748 33.333 6.26 0.00 33.19 3.07
3841 4006 8.365060 TGTTCTTAAATCATGAATTGGGTGAT 57.635 30.769 6.26 0.00 34.23 3.06
3842 4007 7.773489 TGTTCTTAAATCATGAATTGGGTGA 57.227 32.000 6.26 0.00 0.00 4.02
3843 4008 8.306038 TCTTGTTCTTAAATCATGAATTGGGTG 58.694 33.333 6.26 0.00 0.00 4.61
3844 4009 8.421249 TCTTGTTCTTAAATCATGAATTGGGT 57.579 30.769 6.26 0.00 0.00 4.51
3845 4010 8.742777 TCTCTTGTTCTTAAATCATGAATTGGG 58.257 33.333 6.26 0.00 0.00 4.12
3848 4013 9.831737 CGTTCTCTTGTTCTTAAATCATGAATT 57.168 29.630 0.00 0.00 0.00 2.17
3849 4014 9.219603 TCGTTCTCTTGTTCTTAAATCATGAAT 57.780 29.630 0.00 0.00 0.00 2.57
3850 4015 8.601845 TCGTTCTCTTGTTCTTAAATCATGAA 57.398 30.769 0.00 0.00 0.00 2.57
3851 4016 8.088365 TCTCGTTCTCTTGTTCTTAAATCATGA 58.912 33.333 0.00 0.00 0.00 3.07
3852 4017 8.244494 TCTCGTTCTCTTGTTCTTAAATCATG 57.756 34.615 0.00 0.00 0.00 3.07
3857 4022 9.923143 TCAATATCTCGTTCTCTTGTTCTTAAA 57.077 29.630 0.00 0.00 0.00 1.52
3858 4023 9.355215 GTCAATATCTCGTTCTCTTGTTCTTAA 57.645 33.333 0.00 0.00 0.00 1.85
3859 4024 8.740906 AGTCAATATCTCGTTCTCTTGTTCTTA 58.259 33.333 0.00 0.00 0.00 2.10
3860 4025 7.607250 AGTCAATATCTCGTTCTCTTGTTCTT 58.393 34.615 0.00 0.00 0.00 2.52
3861 4026 7.164230 AGTCAATATCTCGTTCTCTTGTTCT 57.836 36.000 0.00 0.00 0.00 3.01
3862 4027 7.820044 AAGTCAATATCTCGTTCTCTTGTTC 57.180 36.000 0.00 0.00 0.00 3.18
3863 4028 8.608844 AAAAGTCAATATCTCGTTCTCTTGTT 57.391 30.769 0.00 0.00 0.00 2.83
3864 4029 8.608844 AAAAAGTCAATATCTCGTTCTCTTGT 57.391 30.769 0.00 0.00 0.00 3.16
3888 4053 9.602568 TGTGAGAATGTAGTTACAAGTGTAAAA 57.397 29.630 5.49 0.00 41.58 1.52
3889 4054 9.772973 ATGTGAGAATGTAGTTACAAGTGTAAA 57.227 29.630 5.49 0.00 41.58 2.01
3890 4055 9.772973 AATGTGAGAATGTAGTTACAAGTGTAA 57.227 29.630 0.00 0.00 39.99 2.41
3891 4056 9.772973 AAATGTGAGAATGTAGTTACAAGTGTA 57.227 29.630 0.00 0.00 39.99 2.90
3892 4057 8.677148 AAATGTGAGAATGTAGTTACAAGTGT 57.323 30.769 0.00 0.00 39.99 3.55
3893 4058 8.993121 AGAAATGTGAGAATGTAGTTACAAGTG 58.007 33.333 0.00 0.00 39.99 3.16
3894 4059 9.561069 AAGAAATGTGAGAATGTAGTTACAAGT 57.439 29.630 0.00 0.00 39.99 3.16
3920 4085 6.655003 GTGAGGGTAAGTCATGAGATCAAAAA 59.345 38.462 0.00 0.00 0.00 1.94
3921 4086 6.013379 AGTGAGGGTAAGTCATGAGATCAAAA 60.013 38.462 0.00 0.00 0.00 2.44
3922 4087 5.485353 AGTGAGGGTAAGTCATGAGATCAAA 59.515 40.000 0.00 0.00 0.00 2.69
3923 4088 5.026121 AGTGAGGGTAAGTCATGAGATCAA 58.974 41.667 0.00 0.00 0.00 2.57
3924 4089 4.614475 AGTGAGGGTAAGTCATGAGATCA 58.386 43.478 0.00 0.00 0.00 2.92
3925 4090 5.606348 AAGTGAGGGTAAGTCATGAGATC 57.394 43.478 0.00 0.00 0.00 2.75
3926 4091 6.380079 AAAAGTGAGGGTAAGTCATGAGAT 57.620 37.500 0.00 0.00 0.00 2.75
3927 4092 5.825593 AAAAGTGAGGGTAAGTCATGAGA 57.174 39.130 0.00 0.00 0.00 3.27
3928 4093 6.090898 CGTTAAAAGTGAGGGTAAGTCATGAG 59.909 42.308 0.00 0.00 0.00 2.90
3929 4094 5.929992 CGTTAAAAGTGAGGGTAAGTCATGA 59.070 40.000 0.00 0.00 0.00 3.07
3930 4095 5.929992 TCGTTAAAAGTGAGGGTAAGTCATG 59.070 40.000 0.00 0.00 0.00 3.07
3931 4096 6.105397 TCGTTAAAAGTGAGGGTAAGTCAT 57.895 37.500 0.00 0.00 0.00 3.06
3932 4097 5.534207 TCGTTAAAAGTGAGGGTAAGTCA 57.466 39.130 0.00 0.00 0.00 3.41
3933 4098 6.849588 TTTCGTTAAAAGTGAGGGTAAGTC 57.150 37.500 0.00 0.00 0.00 3.01
3934 4099 7.222161 AGATTTCGTTAAAAGTGAGGGTAAGT 58.778 34.615 0.00 0.00 0.00 2.24
3935 4100 7.386848 TGAGATTTCGTTAAAAGTGAGGGTAAG 59.613 37.037 0.00 0.00 0.00 2.34
3938 4103 5.617252 TGAGATTTCGTTAAAAGTGAGGGT 58.383 37.500 0.00 0.00 0.00 4.34
3958 4123 6.701145 TTGAGTAGCCTGAACTAGTATGAG 57.299 41.667 0.00 0.00 0.00 2.90
4079 4244 4.330894 CGAGACAAGATAAAGCAGCATGAA 59.669 41.667 0.00 0.00 39.69 2.57
4137 4461 2.159282 GCATTGGAGAAGGATGCTTGTG 60.159 50.000 3.35 0.00 42.12 3.33
4242 4569 5.049749 CAGACGATTTGAACACACCATTACA 60.050 40.000 0.00 0.00 0.00 2.41
4297 4624 1.342174 CCAGCTTTGTTGCTCACCAAT 59.658 47.619 0.00 0.00 41.98 3.16
4359 4686 3.494251 CACAAGCCATTTGCAACCTTAAC 59.506 43.478 0.00 0.00 44.83 2.01
4642 5016 8.242053 CAGACAGTCAATGCATTTAGAAGAATT 58.758 33.333 9.83 0.00 0.00 2.17
4727 5101 3.573538 GCACCAAATATGATGCCCATACA 59.426 43.478 0.00 0.00 40.29 2.29
4773 5150 2.553028 GGGCAGAAGAACCATTGTCAGA 60.553 50.000 0.00 0.00 0.00 3.27
4774 5151 1.815003 GGGCAGAAGAACCATTGTCAG 59.185 52.381 0.00 0.00 0.00 3.51
4775 5152 1.144708 TGGGCAGAAGAACCATTGTCA 59.855 47.619 0.00 0.00 0.00 3.58
4913 5291 3.866066 GTCTACAGACCAGCAATGAGCAA 60.866 47.826 0.00 0.00 41.69 3.91
4914 5292 2.354103 GTCTACAGACCAGCAATGAGCA 60.354 50.000 0.00 0.00 41.69 4.26
5018 5396 9.685828 GTACAGATCTTAAGGATATCAAGTGTC 57.314 37.037 4.83 3.94 34.33 3.67
5023 5401 7.016268 GGTGGGTACAGATCTTAAGGATATCAA 59.984 40.741 4.83 0.00 34.33 2.57
5068 5446 4.700213 CCTGGTGGACTCGAAATTACAAAT 59.300 41.667 0.00 0.00 34.57 2.32
5079 5457 2.262915 GAGCACCTGGTGGACTCG 59.737 66.667 27.02 1.96 37.04 4.18
5264 5663 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
5265 5664 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
5266 5665 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
5267 5666 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
5268 5667 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
5269 5668 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
5270 5669 3.377172 GTGGGTCATCTATTTTGGAACGG 59.623 47.826 0.00 0.00 0.00 4.44
5271 5670 4.006989 TGTGGGTCATCTATTTTGGAACG 58.993 43.478 0.00 0.00 0.00 3.95
5272 5671 5.975693 TTGTGGGTCATCTATTTTGGAAC 57.024 39.130 0.00 0.00 0.00 3.62
5273 5672 6.074648 ACTTTGTGGGTCATCTATTTTGGAA 58.925 36.000 0.00 0.00 0.00 3.53
5274 5673 5.640147 ACTTTGTGGGTCATCTATTTTGGA 58.360 37.500 0.00 0.00 0.00 3.53
5275 5674 5.982890 ACTTTGTGGGTCATCTATTTTGG 57.017 39.130 0.00 0.00 0.00 3.28
5276 5675 8.110860 ACTAACTTTGTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
5277 5676 9.227777 GTACTAACTTTGTGGGTCATCTATTTT 57.772 33.333 0.00 0.00 0.00 1.82
5278 5677 8.380099 TGTACTAACTTTGTGGGTCATCTATTT 58.620 33.333 0.00 0.00 0.00 1.40
5279 5678 7.913789 TGTACTAACTTTGTGGGTCATCTATT 58.086 34.615 0.00 0.00 0.00 1.73
5280 5679 7.490657 TGTACTAACTTTGTGGGTCATCTAT 57.509 36.000 0.00 0.00 0.00 1.98
5281 5680 6.921486 TGTACTAACTTTGTGGGTCATCTA 57.079 37.500 0.00 0.00 0.00 1.98
5282 5681 5.818678 TGTACTAACTTTGTGGGTCATCT 57.181 39.130 0.00 0.00 0.00 2.90
5283 5682 6.485648 ACTTTGTACTAACTTTGTGGGTCATC 59.514 38.462 0.00 0.00 0.00 2.92
5284 5683 6.362248 ACTTTGTACTAACTTTGTGGGTCAT 58.638 36.000 0.00 0.00 0.00 3.06
5285 5684 5.747342 ACTTTGTACTAACTTTGTGGGTCA 58.253 37.500 0.00 0.00 0.00 4.02
5286 5685 6.316890 TCAACTTTGTACTAACTTTGTGGGTC 59.683 38.462 0.00 0.00 0.00 4.46
5287 5686 6.181908 TCAACTTTGTACTAACTTTGTGGGT 58.818 36.000 0.00 0.00 0.00 4.51
5288 5687 6.317893 ACTCAACTTTGTACTAACTTTGTGGG 59.682 38.462 0.00 0.00 0.00 4.61
5289 5688 7.065324 TGACTCAACTTTGTACTAACTTTGTGG 59.935 37.037 0.00 0.00 0.00 4.17
5290 5689 7.970384 TGACTCAACTTTGTACTAACTTTGTG 58.030 34.615 0.00 1.74 0.00 3.33
5291 5690 8.732746 ATGACTCAACTTTGTACTAACTTTGT 57.267 30.769 0.00 0.00 0.00 2.83
5292 5691 9.046296 AGATGACTCAACTTTGTACTAACTTTG 57.954 33.333 0.00 0.00 0.00 2.77
5299 5698 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
5300 5699 8.237267 CCCAAAATAGATGACTCAACTTTGTAC 58.763 37.037 0.00 0.00 0.00 2.90
5301 5700 8.160765 TCCCAAAATAGATGACTCAACTTTGTA 58.839 33.333 0.00 0.00 0.00 2.41
5302 5701 7.004086 TCCCAAAATAGATGACTCAACTTTGT 58.996 34.615 0.00 0.00 0.00 2.83
5303 5702 7.308435 GTCCCAAAATAGATGACTCAACTTTG 58.692 38.462 0.00 0.00 0.00 2.77
5304 5703 6.149474 CGTCCCAAAATAGATGACTCAACTTT 59.851 38.462 0.00 0.00 0.00 2.66
5305 5704 5.643777 CGTCCCAAAATAGATGACTCAACTT 59.356 40.000 0.00 0.00 0.00 2.66
5306 5705 5.178797 CGTCCCAAAATAGATGACTCAACT 58.821 41.667 0.00 0.00 0.00 3.16
5307 5706 4.332819 CCGTCCCAAAATAGATGACTCAAC 59.667 45.833 0.00 0.00 0.00 3.18
5308 5707 4.224147 TCCGTCCCAAAATAGATGACTCAA 59.776 41.667 0.00 0.00 0.00 3.02
5309 5708 3.772572 TCCGTCCCAAAATAGATGACTCA 59.227 43.478 0.00 0.00 0.00 3.41
5310 5709 4.372656 CTCCGTCCCAAAATAGATGACTC 58.627 47.826 0.00 0.00 0.00 3.36
5311 5710 3.134804 CCTCCGTCCCAAAATAGATGACT 59.865 47.826 0.00 0.00 0.00 3.41
5312 5711 3.467803 CCTCCGTCCCAAAATAGATGAC 58.532 50.000 0.00 0.00 0.00 3.06
5313 5712 2.438021 CCCTCCGTCCCAAAATAGATGA 59.562 50.000 0.00 0.00 0.00 2.92
5314 5713 2.438021 TCCCTCCGTCCCAAAATAGATG 59.562 50.000 0.00 0.00 0.00 2.90
5315 5714 2.706190 CTCCCTCCGTCCCAAAATAGAT 59.294 50.000 0.00 0.00 0.00 1.98
5316 5715 2.116238 CTCCCTCCGTCCCAAAATAGA 58.884 52.381 0.00 0.00 0.00 1.98
5317 5716 1.838077 ACTCCCTCCGTCCCAAAATAG 59.162 52.381 0.00 0.00 0.00 1.73
5318 5717 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5319 5718 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
5320 5719 1.732117 TTACTCCCTCCGTCCCAAAA 58.268 50.000 0.00 0.00 0.00 2.44
5321 5720 1.732117 TTTACTCCCTCCGTCCCAAA 58.268 50.000 0.00 0.00 0.00 3.28
5322 5721 1.557832 CATTTACTCCCTCCGTCCCAA 59.442 52.381 0.00 0.00 0.00 4.12
5323 5722 1.200519 CATTTACTCCCTCCGTCCCA 58.799 55.000 0.00 0.00 0.00 4.37
5324 5723 0.468648 CCATTTACTCCCTCCGTCCC 59.531 60.000 0.00 0.00 0.00 4.46
5325 5724 0.468648 CCCATTTACTCCCTCCGTCC 59.531 60.000 0.00 0.00 0.00 4.79
5326 5725 1.492764 TCCCATTTACTCCCTCCGTC 58.507 55.000 0.00 0.00 0.00 4.79
5327 5726 1.961133 TTCCCATTTACTCCCTCCGT 58.039 50.000 0.00 0.00 0.00 4.69
5328 5727 2.851195 CATTCCCATTTACTCCCTCCG 58.149 52.381 0.00 0.00 0.00 4.63
5329 5728 2.175715 AGCATTCCCATTTACTCCCTCC 59.824 50.000 0.00 0.00 0.00 4.30
5330 5729 3.117888 TGAGCATTCCCATTTACTCCCTC 60.118 47.826 0.00 0.00 0.00 4.30
5331 5730 2.852449 TGAGCATTCCCATTTACTCCCT 59.148 45.455 0.00 0.00 0.00 4.20
5332 5731 3.297134 TGAGCATTCCCATTTACTCCC 57.703 47.619 0.00 0.00 0.00 4.30
5333 5732 4.518211 CAGATGAGCATTCCCATTTACTCC 59.482 45.833 0.00 0.00 0.00 3.85
5334 5733 4.023365 GCAGATGAGCATTCCCATTTACTC 60.023 45.833 0.00 0.00 0.00 2.59
5335 5734 3.887716 GCAGATGAGCATTCCCATTTACT 59.112 43.478 0.00 0.00 0.00 2.24
5336 5735 3.633525 TGCAGATGAGCATTCCCATTTAC 59.366 43.478 0.00 0.00 40.11 2.01
5337 5736 3.887110 CTGCAGATGAGCATTCCCATTTA 59.113 43.478 8.42 0.00 44.68 1.40
5338 5737 2.693591 CTGCAGATGAGCATTCCCATTT 59.306 45.455 8.42 0.00 44.68 2.32
5362 5761 5.410355 AGCAAAATTCCACAATAGTGCAT 57.590 34.783 0.00 0.00 44.53 3.96
5387 5786 5.070685 AGGTTTTCTCTCGCTAACCATTTT 58.929 37.500 0.00 0.00 41.93 1.82
5428 5827 2.258013 CGGGAAAGAGCGGCAAACA 61.258 57.895 1.45 0.00 0.00 2.83
5430 5829 2.671619 CCGGGAAAGAGCGGCAAA 60.672 61.111 1.45 0.00 0.00 3.68
5466 5865 1.072806 ACAGCCTCATCAGTTTCAGCA 59.927 47.619 0.00 0.00 0.00 4.41
5481 5880 4.943705 TGTAATCTGAAGAAATGGACAGCC 59.056 41.667 0.00 0.00 0.00 4.85
5596 5998 9.274206 AGAGTTTGTTCTCTTGTAACTATTTCC 57.726 33.333 0.00 0.00 41.36 3.13
5623 6025 3.898529 AGAGTAGAAACTTTCGGACACG 58.101 45.455 10.48 0.00 35.56 4.49
5656 6060 6.211515 CCAGATCCTCAAAAGACAAACTTTG 58.788 40.000 0.00 0.00 46.55 2.77
5658 6062 4.279420 GCCAGATCCTCAAAAGACAAACTT 59.721 41.667 0.00 0.00 40.98 2.66
5659 6063 3.823304 GCCAGATCCTCAAAAGACAAACT 59.177 43.478 0.00 0.00 0.00 2.66
5660 6064 3.569701 TGCCAGATCCTCAAAAGACAAAC 59.430 43.478 0.00 0.00 0.00 2.93
5661 6065 3.831323 TGCCAGATCCTCAAAAGACAAA 58.169 40.909 0.00 0.00 0.00 2.83
5662 6066 3.507162 TGCCAGATCCTCAAAAGACAA 57.493 42.857 0.00 0.00 0.00 3.18
5663 6067 3.009363 TCATGCCAGATCCTCAAAAGACA 59.991 43.478 0.00 0.00 0.00 3.41
5664 6068 3.614092 TCATGCCAGATCCTCAAAAGAC 58.386 45.455 0.00 0.00 0.00 3.01
5665 6069 4.080186 TGATCATGCCAGATCCTCAAAAGA 60.080 41.667 11.58 0.00 42.95 2.52
5666 6070 4.204799 TGATCATGCCAGATCCTCAAAAG 58.795 43.478 11.58 0.00 42.95 2.27
5667 6071 4.239428 TGATCATGCCAGATCCTCAAAA 57.761 40.909 11.58 0.00 42.95 2.44
5668 6072 3.937778 TGATCATGCCAGATCCTCAAA 57.062 42.857 11.58 0.00 42.95 2.69
5669 6073 3.937778 TTGATCATGCCAGATCCTCAA 57.062 42.857 11.58 0.97 42.95 3.02
5670 6074 3.201487 AGTTTGATCATGCCAGATCCTCA 59.799 43.478 11.58 0.00 42.95 3.86
5671 6075 3.818180 AGTTTGATCATGCCAGATCCTC 58.182 45.455 11.58 4.29 42.95 3.71
5672 6076 3.947612 AGTTTGATCATGCCAGATCCT 57.052 42.857 11.58 1.54 42.95 3.24
5673 6077 6.455360 TTTAAGTTTGATCATGCCAGATCC 57.545 37.500 11.58 0.00 42.95 3.36
5674 6078 6.420008 GCATTTAAGTTTGATCATGCCAGATC 59.580 38.462 0.00 8.18 43.69 2.75
5675 6079 6.097839 AGCATTTAAGTTTGATCATGCCAGAT 59.902 34.615 9.44 0.00 38.22 2.90
5676 6080 5.419788 AGCATTTAAGTTTGATCATGCCAGA 59.580 36.000 9.44 0.00 38.22 3.86
5677 6081 5.657474 AGCATTTAAGTTTGATCATGCCAG 58.343 37.500 9.44 0.00 38.22 4.85
5678 6082 5.664294 AGCATTTAAGTTTGATCATGCCA 57.336 34.783 9.44 0.00 38.22 4.92
5679 6083 6.673796 GCAAAGCATTTAAGTTTGATCATGCC 60.674 38.462 9.44 0.00 35.03 4.40
5680 6084 6.245724 GCAAAGCATTTAAGTTTGATCATGC 58.754 36.000 0.00 0.27 35.03 4.06
5681 6085 6.183360 GGGCAAAGCATTTAAGTTTGATCATG 60.183 38.462 0.00 0.00 35.03 3.07
5682 6086 5.876460 GGGCAAAGCATTTAAGTTTGATCAT 59.124 36.000 0.00 0.00 35.03 2.45
5683 6087 5.237048 GGGCAAAGCATTTAAGTTTGATCA 58.763 37.500 0.00 0.00 35.03 2.92
5684 6088 4.631377 GGGGCAAAGCATTTAAGTTTGATC 59.369 41.667 0.00 0.00 35.03 2.92
5685 6089 4.041444 TGGGGCAAAGCATTTAAGTTTGAT 59.959 37.500 0.00 0.00 35.03 2.57
5686 6090 3.389329 TGGGGCAAAGCATTTAAGTTTGA 59.611 39.130 0.00 0.00 35.03 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.