Multiple sequence alignment - TraesCS3A01G151600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G151600 chr3A 100.000 4516 0 0 1 4516 141007490 141012005 0.000000e+00 8340.0
1 TraesCS3A01G151600 chr3A 89.892 277 23 4 2713 2988 51264616 51264888 7.190000e-93 351.0
2 TraesCS3A01G151600 chr3A 73.302 427 71 25 333 724 653848202 653847784 2.850000e-22 117.0
3 TraesCS3A01G151600 chr3D 94.284 1627 59 16 884 2491 128997730 128996119 0.000000e+00 2459.0
4 TraesCS3A01G151600 chr3D 90.967 941 51 11 2956 3885 128995928 128995011 0.000000e+00 1236.0
5 TraesCS3A01G151600 chr3D 81.722 662 71 26 3881 4516 125686865 125686228 1.450000e-139 507.0
6 TraesCS3A01G151600 chr3D 95.876 194 8 0 2525 2718 128996120 128995927 9.430000e-82 315.0
7 TraesCS3A01G151600 chr3D 81.169 308 44 10 422 722 488388565 488388265 7.550000e-58 235.0
8 TraesCS3A01G151600 chr3D 82.700 237 21 11 3881 4097 561469610 561469846 4.610000e-45 193.0
9 TraesCS3A01G151600 chr3D 91.803 61 4 1 287 347 161980458 161980517 2.900000e-12 84.2
10 TraesCS3A01G151600 chr3B 85.633 1761 137 64 287 2016 182748840 182747165 0.000000e+00 1744.0
11 TraesCS3A01G151600 chr3B 91.267 584 41 9 2953 3530 182746445 182745866 0.000000e+00 787.0
12 TraesCS3A01G151600 chr3B 85.630 341 27 10 3558 3887 182745872 182745543 5.600000e-89 339.0
13 TraesCS3A01G151600 chr3B 81.733 427 45 8 4023 4445 447973475 447973078 4.360000e-85 326.0
14 TraesCS3A01G151600 chr3B 89.759 166 16 1 4334 4499 770661486 770661650 1.270000e-50 211.0
15 TraesCS3A01G151600 chr3B 89.571 163 16 1 4336 4498 706246491 706246652 5.920000e-49 206.0
16 TraesCS3A01G151600 chr3B 82.902 193 20 4 3879 4058 805130068 805130260 1.300000e-35 161.0
17 TraesCS3A01G151600 chr3B 85.350 157 20 2 87 240 182749300 182749144 4.680000e-35 159.0
18 TraesCS3A01G151600 chr2D 90.323 496 44 4 4022 4516 79529439 79528947 0.000000e+00 647.0
19 TraesCS3A01G151600 chr6D 90.045 442 41 3 4077 4516 463616101 463615661 1.820000e-158 569.0
20 TraesCS3A01G151600 chr6D 80.695 259 42 8 470 725 130478173 130478426 1.280000e-45 195.0
21 TraesCS3A01G151600 chr6D 82.990 194 18 8 3884 4063 447243508 447243700 1.300000e-35 161.0
22 TraesCS3A01G151600 chr6D 91.209 91 7 1 4086 4175 448160755 448160845 6.130000e-24 122.0
23 TraesCS3A01G151600 chr2B 88.579 394 42 3 4104 4496 165096246 165095855 4.090000e-130 475.0
24 TraesCS3A01G151600 chr2B 81.818 198 17 10 3879 4063 594201341 594201532 1.010000e-31 148.0
25 TraesCS3A01G151600 chr2B 80.296 203 19 14 3880 4069 104950179 104949985 2.830000e-27 134.0
26 TraesCS3A01G151600 chr4A 99.174 242 2 0 2717 2958 331123774 331124015 1.930000e-118 436.0
27 TraesCS3A01G151600 chr4A 98.755 241 3 0 2717 2957 588934493 588934733 3.230000e-116 429.0
28 TraesCS3A01G151600 chr4A 79.848 526 89 10 1597 2112 40451396 40450878 7.140000e-98 368.0
29 TraesCS3A01G151600 chr4A 84.984 313 39 5 2963 3267 40446056 40445744 1.220000e-80 311.0
30 TraesCS3A01G151600 chr4D 81.714 525 77 14 1599 2111 423599314 423599831 1.940000e-113 420.0
31 TraesCS3A01G151600 chr4D 87.291 299 30 5 2973 3263 423600404 423600702 7.240000e-88 335.0
32 TraesCS3A01G151600 chr4D 89.634 164 16 1 4335 4498 481970200 481970362 1.650000e-49 207.0
33 TraesCS3A01G151600 chr4D 83.092 207 18 8 3882 4074 350384974 350385177 6.010000e-39 172.0
34 TraesCS3A01G151600 chr4D 80.488 205 16 11 3882 4063 450013684 450013887 7.880000e-28 135.0
35 TraesCS3A01G151600 chr4D 93.182 88 6 0 1 88 500549859 500549946 3.670000e-26 130.0
36 TraesCS3A01G151600 chr4D 90.426 94 9 0 1 94 10966008 10965915 1.710000e-24 124.0
37 TraesCS3A01G151600 chr6A 97.095 241 6 1 2717 2957 21741332 21741093 5.440000e-109 405.0
38 TraesCS3A01G151600 chr6A 95.851 241 10 0 2717 2957 14391291 14391051 1.520000e-104 390.0
39 TraesCS3A01G151600 chr6A 77.814 613 67 31 3883 4464 7716262 7715688 9.430000e-82 315.0
40 TraesCS3A01G151600 chr6A 94.186 86 5 0 1 86 552773933 552774018 1.020000e-26 132.0
41 TraesCS3A01G151600 chr5A 94.286 245 14 0 2716 2960 536150295 536150051 4.270000e-100 375.0
42 TraesCS3A01G151600 chr5A 93.548 248 16 0 2717 2964 90622963 90623210 1.980000e-98 370.0
43 TraesCS3A01G151600 chr5A 86.977 215 22 5 3882 4095 42284931 42284722 2.100000e-58 237.0
44 TraesCS3A01G151600 chr5A 80.696 316 39 15 419 731 680119587 680119883 4.550000e-55 226.0
45 TraesCS3A01G151600 chr5A 78.526 312 54 11 419 726 502392095 502392397 4.610000e-45 193.0
46 TraesCS3A01G151600 chr5A 78.972 214 20 16 327 520 661218549 661218341 6.130000e-24 122.0
47 TraesCS3A01G151600 chr5A 84.466 103 14 2 419 521 661218268 661218168 2.870000e-17 100.0
48 TraesCS3A01G151600 chr5A 90.164 61 4 2 287 347 596362780 596362722 1.350000e-10 78.7
49 TraesCS3A01G151600 chr2A 94.628 242 13 0 2716 2957 645960175 645960416 4.270000e-100 375.0
50 TraesCS3A01G151600 chr2A 94.186 86 5 0 1 86 84005139 84005224 1.020000e-26 132.0
51 TraesCS3A01G151600 chr2A 91.398 93 8 0 9 101 654884035 654884127 1.320000e-25 128.0
52 TraesCS3A01G151600 chr7A 93.548 248 16 0 2717 2964 694023375 694023128 1.980000e-98 370.0
53 TraesCS3A01G151600 chr7A 86.667 180 23 1 4337 4516 483652093 483651915 9.910000e-47 198.0
54 TraesCS3A01G151600 chr7A 91.667 96 6 2 4082 4175 232391382 232391287 1.020000e-26 132.0
55 TraesCS3A01G151600 chr7A 88.710 62 4 3 288 348 33311790 33311849 6.270000e-09 73.1
56 TraesCS3A01G151600 chr7A 89.474 57 5 1 287 343 522929053 522929108 2.250000e-08 71.3
57 TraesCS3A01G151600 chr7A 88.525 61 3 3 287 347 589284887 589284831 2.250000e-08 71.3
58 TraesCS3A01G151600 chr4B 82.133 375 56 8 1597 1966 520220415 520220783 1.220000e-80 311.0
59 TraesCS3A01G151600 chr4B 91.943 211 17 0 2960 3170 520221650 520221860 3.420000e-76 296.0
60 TraesCS3A01G151600 chr4B 91.346 104 9 0 2953 3056 485318017 485318120 4.710000e-30 143.0
61 TraesCS3A01G151600 chr4B 81.481 189 20 9 3880 4066 640459466 640459291 1.690000e-29 141.0
62 TraesCS3A01G151600 chr4B 79.348 92 15 3 426 517 637982176 637982263 1.360000e-05 62.1
63 TraesCS3A01G151600 chr5B 84.074 270 31 11 459 724 530645986 530645725 2.700000e-62 250.0
64 TraesCS3A01G151600 chr5B 86.310 168 22 1 4349 4516 648739765 648739599 9.980000e-42 182.0
65 TraesCS3A01G151600 chr5B 81.347 193 22 7 3884 4063 477431630 477431821 1.310000e-30 145.0
66 TraesCS3A01G151600 chr5B 91.346 104 7 2 2953 3056 688536133 688536234 1.690000e-29 141.0
67 TraesCS3A01G151600 chr5B 80.102 196 25 8 3881 4063 648029901 648030095 2.830000e-27 134.0
68 TraesCS3A01G151600 chr5B 90.141 71 6 1 4104 4174 665816171 665816240 1.730000e-14 91.6
69 TraesCS3A01G151600 chr1D 86.275 204 24 4 522 723 6667497 6667296 7.610000e-53 219.0
70 TraesCS3A01G151600 chr1D 82.627 236 35 5 493 726 375364203 375363972 2.130000e-48 204.0
71 TraesCS3A01G151600 chr5D 79.321 324 44 13 457 772 541525618 541525310 5.920000e-49 206.0
72 TraesCS3A01G151600 chr5D 93.103 87 6 0 1 87 1870570 1870484 1.320000e-25 128.0
73 TraesCS3A01G151600 chr5D 89.691 97 8 2 1 97 460063676 460063770 6.130000e-24 122.0
74 TraesCS3A01G151600 chr7D 86.339 183 23 2 4335 4516 64176052 64176233 9.910000e-47 198.0
75 TraesCS3A01G151600 chr7D 94.186 86 5 0 1 86 18780893 18780978 1.020000e-26 132.0
76 TraesCS3A01G151600 chr7D 90.323 62 4 2 287 347 593672557 593672617 3.740000e-11 80.5
77 TraesCS3A01G151600 chr7D 88.525 61 6 1 287 347 226499339 226499398 6.270000e-09 73.1
78 TraesCS3A01G151600 chrUn 82.902 193 20 4 3879 4058 291742594 291742402 1.300000e-35 161.0
79 TraesCS3A01G151600 chr6B 92.308 104 8 0 2953 3056 696867217 696867114 1.010000e-31 148.0
80 TraesCS3A01G151600 chr6B 88.525 61 5 2 287 347 234676935 234676993 6.270000e-09 73.1
81 TraesCS3A01G151600 chr7B 90.385 104 10 0 2953 3056 412564672 412564569 2.190000e-28 137.0
82 TraesCS3A01G151600 chr1A 93.182 88 6 0 1 88 516383210 516383123 3.670000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G151600 chr3A 141007490 141012005 4515 False 8340.000000 8340 100.0000 1 4516 1 chr3A.!!$F2 4515
1 TraesCS3A01G151600 chr3D 128995011 128997730 2719 True 1336.666667 2459 93.7090 884 3885 3 chr3D.!!$R3 3001
2 TraesCS3A01G151600 chr3D 125686228 125686865 637 True 507.000000 507 81.7220 3881 4516 1 chr3D.!!$R1 635
3 TraesCS3A01G151600 chr3B 182745543 182749300 3757 True 757.250000 1744 86.9700 87 3887 4 chr3B.!!$R2 3800
4 TraesCS3A01G151600 chr4A 40450878 40451396 518 True 368.000000 368 79.8480 1597 2112 1 chr4A.!!$R2 515
5 TraesCS3A01G151600 chr4D 423599314 423600702 1388 False 377.500000 420 84.5025 1599 3263 2 chr4D.!!$F5 1664
6 TraesCS3A01G151600 chr6A 7715688 7716262 574 True 315.000000 315 77.8140 3883 4464 1 chr6A.!!$R1 581
7 TraesCS3A01G151600 chr4B 520220415 520221860 1445 False 303.500000 311 87.0380 1597 3170 2 chr4B.!!$F3 1573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 0.035317 AATGGCTGAGAGCACGTCAA 59.965 50.0 0.00 0.00 44.75 3.18 F
49 50 0.036105 AGTGGCGCTGATCATTGTGA 60.036 50.0 7.64 0.00 0.00 3.58 F
73 74 0.108804 CCTGAAGGAGCGCTCGTTAA 60.109 55.0 36.96 30.77 37.75 2.01 F
677 964 0.169009 GGCTTGAGATTTGGACGCAC 59.831 55.0 0.00 0.00 0.00 5.34 F
678 965 0.179215 GCTTGAGATTTGGACGCACG 60.179 55.0 0.00 0.00 0.00 5.34 F
680 967 0.250124 TTGAGATTTGGACGCACGGT 60.250 50.0 0.00 0.00 0.00 4.83 F
866 1160 0.252239 GGGGGCCACTGGATCTTTTT 60.252 55.0 4.16 0.00 0.00 1.94 F
2148 2692 0.320596 ACGCATTTTTGCCACCCATG 60.321 50.0 0.00 0.00 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1050 1362 0.108615 CCAGACCAGACCAGTAAGCG 60.109 60.000 0.00 0.00 0.00 4.68 R
1577 1896 1.003355 CAACAGCCCACTCATCCGT 60.003 57.895 0.00 0.00 0.00 4.69 R
1926 2254 1.352352 ACACAAAGATCCCCCTCACTG 59.648 52.381 0.00 0.00 0.00 3.66 R
2130 2674 0.320596 ACATGGGTGGCAAAAATGCG 60.321 50.000 0.00 0.00 35.24 4.73 R
2305 2853 1.765904 TGTCCTAGAACAAGTGCACCA 59.234 47.619 14.63 0.00 0.00 4.17 R
2466 3131 3.072038 CCTCCTCCTGCAATCATCACATA 59.928 47.826 0.00 0.00 0.00 2.29 R
2758 3509 2.301870 TGCCAATAGTCAAAGACGGTCT 59.698 45.455 4.45 4.45 37.67 3.85 R
3945 4720 0.179124 GAGCTGTGATCTGACGGTCC 60.179 60.000 5.55 0.00 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.909662 GACACATGGCGAATGGCT 58.090 55.556 0.00 0.00 40.94 4.75
18 19 1.430632 GACACATGGCGAATGGCTG 59.569 57.895 0.00 0.00 40.94 4.85
19 20 1.002257 ACACATGGCGAATGGCTGA 60.002 52.632 0.00 0.00 40.94 4.26
20 21 1.028330 ACACATGGCGAATGGCTGAG 61.028 55.000 0.00 0.00 40.94 3.35
21 22 0.745486 CACATGGCGAATGGCTGAGA 60.745 55.000 0.00 0.00 40.94 3.27
22 23 0.463295 ACATGGCGAATGGCTGAGAG 60.463 55.000 0.00 0.00 40.94 3.20
23 24 1.525535 ATGGCGAATGGCTGAGAGC 60.526 57.895 0.00 0.00 42.94 4.09
24 25 2.124983 GGCGAATGGCTGAGAGCA 60.125 61.111 0.00 0.00 44.75 4.26
25 26 2.467826 GGCGAATGGCTGAGAGCAC 61.468 63.158 0.00 0.00 44.75 4.40
26 27 2.806856 GCGAATGGCTGAGAGCACG 61.807 63.158 0.00 0.00 44.75 5.34
27 28 1.446792 CGAATGGCTGAGAGCACGT 60.447 57.895 0.00 0.00 44.75 4.49
28 29 1.416813 CGAATGGCTGAGAGCACGTC 61.417 60.000 0.00 0.00 44.75 4.34
29 30 0.390340 GAATGGCTGAGAGCACGTCA 60.390 55.000 0.00 0.00 44.75 4.35
30 31 0.035317 AATGGCTGAGAGCACGTCAA 59.965 50.000 0.00 0.00 44.75 3.18
31 32 0.390866 ATGGCTGAGAGCACGTCAAG 60.391 55.000 0.00 0.00 44.75 3.02
32 33 1.005630 GGCTGAGAGCACGTCAAGT 60.006 57.895 0.00 0.00 44.75 3.16
42 43 3.084579 CGTCAAGTGGCGCTGATC 58.915 61.111 7.64 0.00 35.94 2.92
43 44 1.737735 CGTCAAGTGGCGCTGATCA 60.738 57.895 7.64 0.00 35.94 2.92
44 45 1.086067 CGTCAAGTGGCGCTGATCAT 61.086 55.000 7.64 0.00 35.94 2.45
45 46 1.089920 GTCAAGTGGCGCTGATCATT 58.910 50.000 7.64 0.00 0.00 2.57
46 47 1.089112 TCAAGTGGCGCTGATCATTG 58.911 50.000 7.64 4.75 0.00 2.82
47 48 0.806868 CAAGTGGCGCTGATCATTGT 59.193 50.000 7.64 0.00 0.00 2.71
48 49 0.806868 AAGTGGCGCTGATCATTGTG 59.193 50.000 7.64 0.00 0.00 3.33
49 50 0.036105 AGTGGCGCTGATCATTGTGA 60.036 50.000 7.64 0.00 0.00 3.58
50 51 0.376152 GTGGCGCTGATCATTGTGAG 59.624 55.000 7.64 0.00 0.00 3.51
51 52 0.745486 TGGCGCTGATCATTGTGAGG 60.745 55.000 7.64 0.00 0.00 3.86
52 53 0.745845 GGCGCTGATCATTGTGAGGT 60.746 55.000 7.64 0.00 0.00 3.85
53 54 1.089920 GCGCTGATCATTGTGAGGTT 58.910 50.000 0.00 0.00 0.00 3.50
54 55 1.063174 GCGCTGATCATTGTGAGGTTC 59.937 52.381 0.00 0.00 0.00 3.62
55 56 1.667724 CGCTGATCATTGTGAGGTTCC 59.332 52.381 0.00 0.00 0.00 3.62
56 57 2.679059 CGCTGATCATTGTGAGGTTCCT 60.679 50.000 0.00 0.00 0.00 3.36
57 58 2.681848 GCTGATCATTGTGAGGTTCCTG 59.318 50.000 0.00 0.00 0.00 3.86
58 59 3.620719 GCTGATCATTGTGAGGTTCCTGA 60.621 47.826 0.00 0.00 0.00 3.86
59 60 4.582869 CTGATCATTGTGAGGTTCCTGAA 58.417 43.478 0.00 0.00 0.00 3.02
60 61 4.582869 TGATCATTGTGAGGTTCCTGAAG 58.417 43.478 0.00 0.00 0.00 3.02
61 62 3.423539 TCATTGTGAGGTTCCTGAAGG 57.576 47.619 0.00 0.00 0.00 3.46
62 63 2.978978 TCATTGTGAGGTTCCTGAAGGA 59.021 45.455 0.00 0.00 43.73 3.36
63 64 3.008375 TCATTGTGAGGTTCCTGAAGGAG 59.992 47.826 0.00 0.00 46.36 3.69
64 65 0.687354 TGTGAGGTTCCTGAAGGAGC 59.313 55.000 4.70 4.70 46.36 4.70
65 66 0.390472 GTGAGGTTCCTGAAGGAGCG 60.390 60.000 7.07 0.00 46.36 5.03
66 67 1.448717 GAGGTTCCTGAAGGAGCGC 60.449 63.158 0.00 0.00 46.36 5.92
67 68 1.893919 GAGGTTCCTGAAGGAGCGCT 61.894 60.000 11.27 11.27 46.36 5.92
68 69 1.448717 GGTTCCTGAAGGAGCGCTC 60.449 63.158 29.38 29.38 46.36 5.03
69 70 1.807573 GTTCCTGAAGGAGCGCTCG 60.808 63.158 29.81 16.08 46.36 5.03
70 71 2.276116 TTCCTGAAGGAGCGCTCGT 61.276 57.895 29.81 27.91 46.36 4.18
71 72 1.816863 TTCCTGAAGGAGCGCTCGTT 61.817 55.000 37.37 37.37 46.36 3.85
72 73 0.963856 TCCTGAAGGAGCGCTCGTTA 60.964 55.000 36.96 23.11 39.78 3.18
73 74 0.108804 CCTGAAGGAGCGCTCGTTAA 60.109 55.000 36.96 30.77 37.75 2.01
74 75 0.992802 CTGAAGGAGCGCTCGTTAAC 59.007 55.000 36.96 27.51 37.75 2.01
75 76 0.601558 TGAAGGAGCGCTCGTTAACT 59.398 50.000 36.96 23.16 37.75 2.24
76 77 1.814394 TGAAGGAGCGCTCGTTAACTA 59.186 47.619 36.96 23.37 37.75 2.24
77 78 2.159421 TGAAGGAGCGCTCGTTAACTAG 60.159 50.000 36.96 3.24 37.75 2.57
78 79 1.461559 AGGAGCGCTCGTTAACTAGT 58.538 50.000 29.81 3.95 0.00 2.57
79 80 1.817447 AGGAGCGCTCGTTAACTAGTT 59.183 47.619 29.81 13.68 0.00 2.24
80 81 1.918609 GGAGCGCTCGTTAACTAGTTG 59.081 52.381 29.81 1.62 0.00 3.16
81 82 1.320852 GAGCGCTCGTTAACTAGTTGC 59.679 52.381 23.61 11.18 0.00 4.17
82 83 1.067776 AGCGCTCGTTAACTAGTTGCT 60.068 47.619 18.56 17.34 0.00 3.91
83 84 1.320852 GCGCTCGTTAACTAGTTGCTC 59.679 52.381 18.56 3.86 0.00 4.26
84 85 2.864968 CGCTCGTTAACTAGTTGCTCT 58.135 47.619 18.56 0.00 0.00 4.09
85 86 2.847133 CGCTCGTTAACTAGTTGCTCTC 59.153 50.000 18.56 2.53 0.00 3.20
114 115 8.500837 TTTTCGTGTATTTTTCATGTGTGATC 57.499 30.769 0.00 0.00 33.56 2.92
119 120 1.902938 TTTTCATGTGTGATCGGCCA 58.097 45.000 2.24 0.00 33.56 5.36
126 127 3.499737 GTGATCGGCCAAGCGGTG 61.500 66.667 2.24 0.00 33.28 4.94
137 138 1.374758 AAGCGGTGAAGAGGCTTCG 60.375 57.895 0.00 0.00 43.02 3.79
141 142 0.790814 CGGTGAAGAGGCTTCGTTTC 59.209 55.000 0.00 0.00 0.00 2.78
152 153 3.004734 AGGCTTCGTTTCTTGTGATTTGG 59.995 43.478 0.00 0.00 0.00 3.28
158 159 3.815401 CGTTTCTTGTGATTTGGACTCCT 59.185 43.478 0.00 0.00 0.00 3.69
160 161 4.705110 TTCTTGTGATTTGGACTCCTCA 57.295 40.909 0.00 0.00 0.00 3.86
161 162 4.008074 TCTTGTGATTTGGACTCCTCAC 57.992 45.455 8.42 8.42 38.74 3.51
204 208 0.716666 GAACGCTCTTCGAAAGCCTC 59.283 55.000 19.64 14.75 41.67 4.70
205 209 0.670854 AACGCTCTTCGAAAGCCTCC 60.671 55.000 19.64 0.00 41.67 4.30
206 210 1.811679 CGCTCTTCGAAAGCCTCCC 60.812 63.158 19.64 1.58 41.67 4.30
209 213 1.680249 GCTCTTCGAAAGCCTCCCAAT 60.680 52.381 16.62 0.00 33.53 3.16
215 219 3.541632 TCGAAAGCCTCCCAATGATTAC 58.458 45.455 0.00 0.00 0.00 1.89
220 224 5.717119 AAGCCTCCCAATGATTACTTAGT 57.283 39.130 0.00 0.00 0.00 2.24
228 232 5.397447 CCCAATGATTACTTAGTGTGGGCTA 60.397 44.000 0.00 0.00 38.19 3.93
234 238 2.257207 ACTTAGTGTGGGCTAAGAGCA 58.743 47.619 16.70 0.00 46.55 4.26
235 239 2.637872 ACTTAGTGTGGGCTAAGAGCAA 59.362 45.455 16.70 0.00 46.55 3.91
243 247 2.378028 GCTAAGAGCAAGCCACTCG 58.622 57.895 0.00 0.00 41.89 4.18
244 248 1.086634 GCTAAGAGCAAGCCACTCGG 61.087 60.000 0.00 0.00 41.89 4.63
254 258 2.571757 CCACTCGGCGCACTCTTA 59.428 61.111 10.83 0.00 0.00 2.10
260 264 4.821589 GGCGCACTCTTAGCCGCT 62.822 66.667 10.83 0.00 41.53 5.52
262 266 2.125912 CGCACTCTTAGCCGCTGT 60.126 61.111 2.16 0.00 0.00 4.40
265 269 0.460987 GCACTCTTAGCCGCTGTCAT 60.461 55.000 2.16 0.00 0.00 3.06
267 271 0.176680 ACTCTTAGCCGCTGTCATGG 59.823 55.000 2.16 0.00 0.00 3.66
271 275 1.549243 TTAGCCGCTGTCATGGGTCA 61.549 55.000 2.16 0.00 37.19 4.02
272 276 1.337384 TAGCCGCTGTCATGGGTCAT 61.337 55.000 2.16 0.00 37.19 3.06
276 280 1.028330 CGCTGTCATGGGTCATGCTT 61.028 55.000 3.23 0.00 41.18 3.91
279 283 2.754552 GCTGTCATGGGTCATGCTTTTA 59.245 45.455 3.23 0.00 41.18 1.52
314 590 5.626955 GCCTCTTCGAAACAGAAAGAAAATG 59.373 40.000 0.00 0.00 0.00 2.32
315 591 6.729187 CCTCTTCGAAACAGAAAGAAAATGT 58.271 36.000 0.00 0.00 0.00 2.71
316 592 6.634436 CCTCTTCGAAACAGAAAGAAAATGTG 59.366 38.462 0.00 0.00 0.00 3.21
317 593 7.083875 TCTTCGAAACAGAAAGAAAATGTGT 57.916 32.000 0.00 0.00 0.00 3.72
365 648 0.673644 CACCCGTGCCTCTCGAAAAT 60.674 55.000 0.00 0.00 0.00 1.82
426 710 6.866770 CGGTTTTACTTTCACTATGTCTCTCA 59.133 38.462 0.00 0.00 0.00 3.27
433 717 7.901029 ACTTTCACTATGTCTCTCAGAAATGA 58.099 34.615 0.00 0.00 0.00 2.57
487 771 1.975660 TAGAGGCACGGTTTTGCTTT 58.024 45.000 0.00 0.00 42.56 3.51
489 773 0.660300 GAGGCACGGTTTTGCTTTCG 60.660 55.000 0.00 0.00 42.56 3.46
496 780 6.307055 GCACGGTTTTGCTTTCGTAAGAGA 62.307 45.833 5.91 0.00 43.45 3.10
518 802 1.807226 GGGCGTGCCTATTGGAAAC 59.193 57.895 11.25 0.00 36.10 2.78
519 803 1.427819 GGCGTGCCTATTGGAAACG 59.572 57.895 14.45 14.45 43.37 3.60
525 810 1.816224 TGCCTATTGGAAACGGCTTTC 59.184 47.619 0.00 2.13 43.76 2.62
532 817 1.335496 TGGAAACGGCTTTCGAAAAGG 59.665 47.619 12.41 6.51 42.43 3.11
533 818 1.335597 GGAAACGGCTTTCGAAAAGGG 60.336 52.381 12.41 6.16 42.43 3.95
534 819 0.671796 AAACGGCTTTCGAAAAGGGG 59.328 50.000 12.41 1.19 42.43 4.79
541 826 3.128349 GCTTTCGAAAAGGGGGAAAAAC 58.872 45.455 12.41 0.00 0.00 2.43
544 829 5.510009 GCTTTCGAAAAGGGGGAAAAACATA 60.510 40.000 12.41 0.00 0.00 2.29
569 855 3.681593 TCTATTCGGGTTTTTGTCTGGG 58.318 45.455 0.00 0.00 0.00 4.45
570 856 2.375014 ATTCGGGTTTTTGTCTGGGT 57.625 45.000 0.00 0.00 0.00 4.51
610 896 5.912528 ACGTTCGTCAAAATCTATCAACAC 58.087 37.500 0.00 0.00 0.00 3.32
612 898 5.313623 GTTCGTCAAAATCTATCAACACGG 58.686 41.667 0.00 0.00 0.00 4.94
623 909 5.902681 TCTATCAACACGGGATCTAGTTTG 58.097 41.667 0.00 2.29 0.00 2.93
624 910 4.819105 ATCAACACGGGATCTAGTTTGA 57.181 40.909 0.00 14.10 0.00 2.69
626 912 4.566004 TCAACACGGGATCTAGTTTGAAG 58.434 43.478 0.00 0.00 0.00 3.02
627 913 4.282449 TCAACACGGGATCTAGTTTGAAGA 59.718 41.667 0.00 0.00 0.00 2.87
628 914 5.046591 TCAACACGGGATCTAGTTTGAAGAT 60.047 40.000 0.00 0.00 36.40 2.40
629 915 5.012328 ACACGGGATCTAGTTTGAAGATC 57.988 43.478 0.00 4.81 45.74 2.75
630 916 4.712337 ACACGGGATCTAGTTTGAAGATCT 59.288 41.667 11.65 0.00 45.74 2.75
631 917 5.163499 ACACGGGATCTAGTTTGAAGATCTC 60.163 44.000 11.65 7.73 45.74 2.75
632 918 4.956700 ACGGGATCTAGTTTGAAGATCTCA 59.043 41.667 12.19 0.00 46.94 3.27
649 936 1.128692 CTCAACGCGAGAAATCCAACC 59.871 52.381 15.93 0.00 45.45 3.77
652 939 1.289109 ACGCGAGAAATCCAACCGTG 61.289 55.000 15.93 0.00 36.88 4.94
674 961 1.156736 AACGGCTTGAGATTTGGACG 58.843 50.000 0.00 0.00 36.17 4.79
675 962 1.298859 ACGGCTTGAGATTTGGACGC 61.299 55.000 0.00 0.00 33.00 5.19
676 963 1.298157 CGGCTTGAGATTTGGACGCA 61.298 55.000 0.00 0.00 0.00 5.24
677 964 0.169009 GGCTTGAGATTTGGACGCAC 59.831 55.000 0.00 0.00 0.00 5.34
678 965 0.179215 GCTTGAGATTTGGACGCACG 60.179 55.000 0.00 0.00 0.00 5.34
679 966 0.443869 CTTGAGATTTGGACGCACGG 59.556 55.000 0.00 0.00 0.00 4.94
680 967 0.250124 TTGAGATTTGGACGCACGGT 60.250 50.000 0.00 0.00 0.00 4.83
681 968 0.250124 TGAGATTTGGACGCACGGTT 60.250 50.000 0.00 0.00 0.00 4.44
682 969 0.872388 GAGATTTGGACGCACGGTTT 59.128 50.000 0.00 0.00 0.00 3.27
683 970 2.070783 GAGATTTGGACGCACGGTTTA 58.929 47.619 0.00 0.00 0.00 2.01
684 971 2.481185 GAGATTTGGACGCACGGTTTAA 59.519 45.455 0.00 0.00 0.00 1.52
685 972 2.482721 AGATTTGGACGCACGGTTTAAG 59.517 45.455 0.00 0.00 0.00 1.85
686 973 1.950828 TTTGGACGCACGGTTTAAGA 58.049 45.000 0.00 0.00 0.00 2.10
687 974 1.504359 TTGGACGCACGGTTTAAGAG 58.496 50.000 0.00 0.00 0.00 2.85
694 981 5.064325 GGACGCACGGTTTAAGAGATAAAAT 59.936 40.000 0.00 0.00 35.33 1.82
770 1058 8.316640 AGATACTCCTCAATTAATGATTTCGC 57.683 34.615 0.00 0.00 37.44 4.70
771 1059 5.757850 ACTCCTCAATTAATGATTTCGCC 57.242 39.130 0.00 0.00 37.44 5.54
822 1116 3.006940 TCATTCATTTCGTGTAGCCACC 58.993 45.455 0.00 0.00 38.41 4.61
864 1158 3.100111 GGGGGCCACTGGATCTTT 58.900 61.111 4.16 0.00 0.00 2.52
865 1159 1.388133 GGGGGCCACTGGATCTTTT 59.612 57.895 4.16 0.00 0.00 2.27
866 1160 0.252239 GGGGGCCACTGGATCTTTTT 60.252 55.000 4.16 0.00 0.00 1.94
947 1244 3.370103 CCTCGAAACTGGGCCTAATGTTA 60.370 47.826 4.53 0.00 0.00 2.41
952 1249 0.535102 CTGGGCCTAATGTTAGCCCG 60.535 60.000 14.23 5.88 43.79 6.13
1035 1347 4.896829 CTCCTCCGCCCTCGCCTA 62.897 72.222 0.00 0.00 0.00 3.93
1050 1362 2.027751 CTACTTCCTAGCCGCGCC 59.972 66.667 0.00 0.00 0.00 6.53
1283 1595 7.894708 TCTTTTCATTCTTAATTGTGCATGGA 58.105 30.769 0.00 0.00 0.00 3.41
1285 1597 5.252969 TCATTCTTAATTGTGCATGGAGC 57.747 39.130 0.00 0.00 45.96 4.70
1341 1659 3.731855 CGTGTGATTATGTGTCGGTTTG 58.268 45.455 0.00 0.00 0.00 2.93
1342 1660 3.430556 CGTGTGATTATGTGTCGGTTTGA 59.569 43.478 0.00 0.00 0.00 2.69
1364 1683 3.933332 ACGAAAAAGGAAGAGCTATTCGG 59.067 43.478 14.57 1.37 41.59 4.30
1460 1779 2.852449 TGGAAGAATGGCCCATTAGACT 59.148 45.455 9.43 0.00 33.90 3.24
1461 1780 4.044308 TGGAAGAATGGCCCATTAGACTA 58.956 43.478 9.43 0.00 33.90 2.59
1462 1781 4.103153 TGGAAGAATGGCCCATTAGACTAG 59.897 45.833 9.43 0.00 33.90 2.57
1463 1782 4.505742 GGAAGAATGGCCCATTAGACTAGG 60.506 50.000 9.43 0.00 33.90 3.02
1464 1783 2.373502 AGAATGGCCCATTAGACTAGGC 59.626 50.000 9.43 3.18 44.99 3.93
1592 1911 0.824109 TCTTACGGATGAGTGGGCTG 59.176 55.000 0.00 0.00 0.00 4.85
1627 1946 7.221452 GCATAAACTGTATGATTTTGGAGCTTG 59.779 37.037 0.00 0.00 0.00 4.01
1657 1977 6.818644 TGCTTGACTCCATACTTTAGTCATTC 59.181 38.462 5.33 2.21 46.53 2.67
1820 2142 2.125106 GTCCGTGGTCAGCATCCC 60.125 66.667 0.00 0.00 0.00 3.85
1935 2263 0.984230 TACTTTCTGGCAGTGAGGGG 59.016 55.000 15.27 3.17 0.00 4.79
2130 2674 2.223377 CAGGTGAAGTCGCTTGGTTTAC 59.777 50.000 0.00 0.00 30.95 2.01
2148 2692 0.320596 ACGCATTTTTGCCACCCATG 60.321 50.000 0.00 0.00 0.00 3.66
2169 2714 5.794687 TGTCTTCCATGTGCTTAAATACG 57.205 39.130 0.00 0.00 0.00 3.06
2180 2725 6.771076 TGTGCTTAAATACGTGTGATGAATC 58.229 36.000 0.00 0.00 0.00 2.52
2302 2850 5.575218 AGGAAACGTTGACATGTTTTGTTTC 59.425 36.000 23.99 23.99 41.41 2.78
2305 2853 5.054390 ACGTTGACATGTTTTGTTTCAGT 57.946 34.783 0.00 0.00 39.18 3.41
2450 3070 8.633075 AATAATTCCATTTCATTGCACTAACG 57.367 30.769 0.00 0.00 0.00 3.18
2466 3131 5.640783 GCACTAACGAAACCAACCTTATAGT 59.359 40.000 0.00 0.00 0.00 2.12
2508 3186 5.061721 AGGTTACTCCTCAAACCAAACAT 57.938 39.130 6.97 0.00 46.29 2.71
2513 3191 4.082125 ACTCCTCAAACCAAACATCCATC 58.918 43.478 0.00 0.00 0.00 3.51
2514 3192 3.430453 TCCTCAAACCAAACATCCATCC 58.570 45.455 0.00 0.00 0.00 3.51
2518 3196 4.478203 TCAAACCAAACATCCATCCAGAA 58.522 39.130 0.00 0.00 0.00 3.02
2523 3260 3.067742 CCAAACATCCATCCAGAATCTGC 59.932 47.826 4.40 0.00 0.00 4.26
2718 3469 8.381387 GCTGTAGTTGCTTATGTTCTAAGTTAC 58.619 37.037 0.00 0.00 0.00 2.50
2719 3470 9.640963 CTGTAGTTGCTTATGTTCTAAGTTACT 57.359 33.333 0.00 0.00 0.00 2.24
2720 3471 9.635520 TGTAGTTGCTTATGTTCTAAGTTACTC 57.364 33.333 0.00 0.00 0.00 2.59
2721 3472 9.085250 GTAGTTGCTTATGTTCTAAGTTACTCC 57.915 37.037 0.00 0.00 0.00 3.85
2723 3474 6.869206 TGCTTATGTTCTAAGTTACTCCCT 57.131 37.500 0.00 0.00 0.00 4.20
2724 3475 6.875076 TGCTTATGTTCTAAGTTACTCCCTC 58.125 40.000 0.00 0.00 0.00 4.30
2725 3476 6.127140 TGCTTATGTTCTAAGTTACTCCCTCC 60.127 42.308 0.00 0.00 0.00 4.30
2726 3477 6.098552 GCTTATGTTCTAAGTTACTCCCTCCT 59.901 42.308 0.00 0.00 0.00 3.69
2727 3478 7.364851 GCTTATGTTCTAAGTTACTCCCTCCTT 60.365 40.741 0.00 0.00 0.00 3.36
2728 3479 5.997384 TGTTCTAAGTTACTCCCTCCTTC 57.003 43.478 0.00 0.00 0.00 3.46
2729 3480 4.776308 TGTTCTAAGTTACTCCCTCCTTCC 59.224 45.833 0.00 0.00 0.00 3.46
2730 3481 4.687262 TCTAAGTTACTCCCTCCTTCCA 57.313 45.455 0.00 0.00 0.00 3.53
2731 3482 5.222278 TCTAAGTTACTCCCTCCTTCCAT 57.778 43.478 0.00 0.00 0.00 3.41
2732 3483 5.209659 TCTAAGTTACTCCCTCCTTCCATC 58.790 45.833 0.00 0.00 0.00 3.51
2733 3484 3.786213 AGTTACTCCCTCCTTCCATCT 57.214 47.619 0.00 0.00 0.00 2.90
2734 3485 4.901785 AGTTACTCCCTCCTTCCATCTA 57.098 45.455 0.00 0.00 0.00 1.98
2735 3486 5.426325 AGTTACTCCCTCCTTCCATCTAT 57.574 43.478 0.00 0.00 0.00 1.98
2736 3487 6.547396 AGTTACTCCCTCCTTCCATCTATA 57.453 41.667 0.00 0.00 0.00 1.31
2737 3488 7.122311 AGTTACTCCCTCCTTCCATCTATAT 57.878 40.000 0.00 0.00 0.00 0.86
2738 3489 8.245929 AGTTACTCCCTCCTTCCATCTATATA 57.754 38.462 0.00 0.00 0.00 0.86
2739 3490 8.340757 AGTTACTCCCTCCTTCCATCTATATAG 58.659 40.741 3.10 3.10 0.00 1.31
2740 3491 6.098716 ACTCCCTCCTTCCATCTATATAGG 57.901 45.833 9.89 0.00 0.00 2.57
2741 3492 5.042979 ACTCCCTCCTTCCATCTATATAGGG 60.043 48.000 9.89 4.49 43.23 3.53
2742 3493 4.870361 TCCCTCCTTCCATCTATATAGGGT 59.130 45.833 9.89 0.00 42.58 4.34
2743 3494 5.043281 TCCCTCCTTCCATCTATATAGGGTC 60.043 48.000 9.89 0.00 42.58 4.46
2744 3495 5.042979 CCCTCCTTCCATCTATATAGGGTCT 60.043 48.000 9.89 0.00 38.09 3.85
2745 3496 6.162420 CCCTCCTTCCATCTATATAGGGTCTA 59.838 46.154 9.89 0.00 38.09 2.59
2746 3497 7.313276 CCCTCCTTCCATCTATATAGGGTCTAA 60.313 44.444 9.89 0.00 38.09 2.10
2747 3498 8.293216 CCTCCTTCCATCTATATAGGGTCTAAT 58.707 40.741 9.89 0.00 0.00 1.73
2748 3499 9.142014 CTCCTTCCATCTATATAGGGTCTAATG 57.858 40.741 9.89 5.15 0.00 1.90
2749 3500 7.565398 TCCTTCCATCTATATAGGGTCTAATGC 59.435 40.741 9.89 0.00 0.00 3.56
2750 3501 6.961360 TCCATCTATATAGGGTCTAATGCG 57.039 41.667 9.89 1.15 0.00 4.73
2751 3502 6.432581 TCCATCTATATAGGGTCTAATGCGT 58.567 40.000 9.89 0.00 0.00 5.24
2752 3503 6.895756 TCCATCTATATAGGGTCTAATGCGTT 59.104 38.462 9.89 0.00 0.00 4.84
2753 3504 7.399191 TCCATCTATATAGGGTCTAATGCGTTT 59.601 37.037 9.89 0.00 0.00 3.60
2754 3505 8.041323 CCATCTATATAGGGTCTAATGCGTTTT 58.959 37.037 9.89 0.00 0.00 2.43
2755 3506 9.436957 CATCTATATAGGGTCTAATGCGTTTTT 57.563 33.333 9.89 0.00 0.00 1.94
2777 3528 7.429636 TTTTAAGACCGTCTTTGACTATTGG 57.570 36.000 18.73 0.00 37.89 3.16
2778 3529 2.973945 AGACCGTCTTTGACTATTGGC 58.026 47.619 0.00 0.00 0.00 4.52
2779 3530 2.301870 AGACCGTCTTTGACTATTGGCA 59.698 45.455 0.00 0.00 0.00 4.92
2780 3531 3.071479 GACCGTCTTTGACTATTGGCAA 58.929 45.455 0.68 0.68 0.00 4.52
2781 3532 3.074412 ACCGTCTTTGACTATTGGCAAG 58.926 45.455 5.96 0.00 0.00 4.01
2782 3533 2.420022 CCGTCTTTGACTATTGGCAAGG 59.580 50.000 5.96 0.00 0.00 3.61
2783 3534 3.074412 CGTCTTTGACTATTGGCAAGGT 58.926 45.455 5.96 7.21 0.00 3.50
2784 3535 3.502211 CGTCTTTGACTATTGGCAAGGTT 59.498 43.478 5.96 0.00 0.00 3.50
2785 3536 4.693566 CGTCTTTGACTATTGGCAAGGTTA 59.306 41.667 5.96 1.39 0.00 2.85
2786 3537 5.180492 CGTCTTTGACTATTGGCAAGGTTAA 59.820 40.000 5.96 7.55 0.00 2.01
2787 3538 6.128007 CGTCTTTGACTATTGGCAAGGTTAAT 60.128 38.462 5.96 0.00 0.00 1.40
2788 3539 7.065324 CGTCTTTGACTATTGGCAAGGTTAATA 59.935 37.037 5.96 0.45 0.00 0.98
2789 3540 8.398665 GTCTTTGACTATTGGCAAGGTTAATAG 58.601 37.037 5.96 3.95 39.26 1.73
2790 3541 8.107095 TCTTTGACTATTGGCAAGGTTAATAGT 58.893 33.333 5.96 7.34 45.37 2.12
2791 3542 9.391006 CTTTGACTATTGGCAAGGTTAATAGTA 57.609 33.333 5.96 0.00 43.74 1.82
2792 3543 8.726870 TTGACTATTGGCAAGGTTAATAGTAC 57.273 34.615 5.96 3.32 43.74 2.73
2793 3544 7.853299 TGACTATTGGCAAGGTTAATAGTACA 58.147 34.615 5.96 5.55 43.74 2.90
2794 3545 8.491134 TGACTATTGGCAAGGTTAATAGTACAT 58.509 33.333 5.96 0.00 43.74 2.29
2795 3546 8.677148 ACTATTGGCAAGGTTAATAGTACATG 57.323 34.615 5.96 0.00 42.61 3.21
2796 3547 8.491134 ACTATTGGCAAGGTTAATAGTACATGA 58.509 33.333 5.96 0.00 42.61 3.07
2797 3548 6.995511 TTGGCAAGGTTAATAGTACATGAC 57.004 37.500 0.00 0.00 0.00 3.06
2798 3549 6.056090 TGGCAAGGTTAATAGTACATGACA 57.944 37.500 0.00 0.00 0.00 3.58
2799 3550 6.658849 TGGCAAGGTTAATAGTACATGACAT 58.341 36.000 0.00 0.00 0.00 3.06
2800 3551 6.542005 TGGCAAGGTTAATAGTACATGACATG 59.458 38.462 14.02 14.02 0.00 3.21
2801 3552 6.430451 GCAAGGTTAATAGTACATGACATGC 58.570 40.000 15.49 0.11 0.00 4.06
2802 3553 6.038161 GCAAGGTTAATAGTACATGACATGCA 59.962 38.462 15.49 0.00 0.00 3.96
2803 3554 7.255242 GCAAGGTTAATAGTACATGACATGCAT 60.255 37.037 15.49 0.00 37.85 3.96
2804 3555 9.271828 CAAGGTTAATAGTACATGACATGCATA 57.728 33.333 15.49 6.36 34.82 3.14
2805 3556 9.845740 AAGGTTAATAGTACATGACATGCATAA 57.154 29.630 15.49 3.82 34.82 1.90
2849 3600 9.045223 TGAAATCTCCTTTCACATACGAATATG 57.955 33.333 0.00 0.00 46.45 1.78
2850 3601 9.261180 GAAATCTCCTTTCACATACGAATATGA 57.739 33.333 1.40 0.00 42.42 2.15
2851 3602 8.594881 AATCTCCTTTCACATACGAATATGAC 57.405 34.615 1.40 0.00 40.75 3.06
2852 3603 6.206498 TCTCCTTTCACATACGAATATGACG 58.794 40.000 1.40 0.00 40.75 4.35
2853 3604 5.286438 TCCTTTCACATACGAATATGACGG 58.714 41.667 1.40 0.00 40.75 4.79
2854 3605 5.047847 CCTTTCACATACGAATATGACGGT 58.952 41.667 1.40 0.00 40.75 4.83
2855 3606 6.039605 TCCTTTCACATACGAATATGACGGTA 59.960 38.462 1.40 0.00 40.75 4.02
2865 3616 4.270084 CGAATATGACGGTATGCTTTGTGT 59.730 41.667 0.00 0.00 0.00 3.72
2866 3617 5.460748 CGAATATGACGGTATGCTTTGTGTA 59.539 40.000 0.00 0.00 0.00 2.90
2867 3618 6.019398 CGAATATGACGGTATGCTTTGTGTAA 60.019 38.462 0.00 0.00 0.00 2.41
2868 3619 6.844696 ATATGACGGTATGCTTTGTGTAAG 57.155 37.500 0.00 0.00 36.90 2.34
2871 3622 4.212425 TGACGGTATGCTTTGTGTAAGTTG 59.788 41.667 0.00 0.00 36.19 3.16
2872 3623 3.058501 ACGGTATGCTTTGTGTAAGTTGC 60.059 43.478 0.00 0.00 36.19 4.17
2873 3624 3.058570 CGGTATGCTTTGTGTAAGTTGCA 60.059 43.478 0.00 0.00 36.19 4.08
2876 3627 4.589216 ATGCTTTGTGTAAGTTGCATGT 57.411 36.364 0.00 0.00 39.30 3.21
2877 3628 3.963665 TGCTTTGTGTAAGTTGCATGTC 58.036 40.909 0.00 0.00 36.19 3.06
2880 3631 5.240403 TGCTTTGTGTAAGTTGCATGTCATA 59.760 36.000 0.00 0.00 36.19 2.15
2913 3664 9.638239 TGTTCAAATATTTGATCAAAGTTAGCC 57.362 29.630 27.88 9.82 45.65 3.93
2914 3665 9.860898 GTTCAAATATTTGATCAAAGTTAGCCT 57.139 29.630 27.11 9.75 45.65 4.58
2916 3667 8.397906 TCAAATATTTGATCAAAGTTAGCCTCG 58.602 33.333 23.86 8.21 41.88 4.63
2917 3668 8.397906 CAAATATTTGATCAAAGTTAGCCTCGA 58.602 33.333 24.17 0.00 40.55 4.04
2918 3669 8.506168 AATATTTGATCAAAGTTAGCCTCGAA 57.494 30.769 24.17 0.00 33.32 3.71
2919 3670 6.817765 ATTTGATCAAAGTTAGCCTCGAAA 57.182 33.333 24.17 0.00 33.32 3.46
2920 3671 6.627395 TTTGATCAAAGTTAGCCTCGAAAA 57.373 33.333 16.91 0.00 0.00 2.29
2921 3672 6.627395 TTGATCAAAGTTAGCCTCGAAAAA 57.373 33.333 5.45 0.00 0.00 1.94
2922 3673 5.997385 TGATCAAAGTTAGCCTCGAAAAAC 58.003 37.500 0.00 0.00 0.00 2.43
2923 3674 4.461992 TCAAAGTTAGCCTCGAAAAACG 57.538 40.909 0.00 0.00 44.09 3.60
2924 3675 2.963498 AAGTTAGCCTCGAAAAACGC 57.037 45.000 0.00 0.00 42.26 4.84
2925 3676 1.873698 AGTTAGCCTCGAAAAACGCA 58.126 45.000 0.00 0.00 42.26 5.24
2926 3677 2.423577 AGTTAGCCTCGAAAAACGCAT 58.576 42.857 0.00 0.00 42.26 4.73
2927 3678 2.812011 AGTTAGCCTCGAAAAACGCATT 59.188 40.909 0.00 0.00 42.26 3.56
2928 3679 3.998341 AGTTAGCCTCGAAAAACGCATTA 59.002 39.130 0.00 0.00 42.26 1.90
2929 3680 4.092968 AGTTAGCCTCGAAAAACGCATTAG 59.907 41.667 0.00 0.00 42.26 1.73
2930 3681 1.737793 AGCCTCGAAAAACGCATTAGG 59.262 47.619 0.00 0.00 42.26 2.69
2931 3682 1.794076 GCCTCGAAAAACGCATTAGGC 60.794 52.381 0.00 0.00 45.73 3.93
2932 3683 1.202143 CCTCGAAAAACGCATTAGGCC 60.202 52.381 0.00 0.00 42.26 5.19
2933 3684 0.806241 TCGAAAAACGCATTAGGCCC 59.194 50.000 0.00 0.00 42.26 5.80
2934 3685 0.808755 CGAAAAACGCATTAGGCCCT 59.191 50.000 0.00 0.00 40.31 5.19
2935 3686 2.011222 CGAAAAACGCATTAGGCCCTA 58.989 47.619 0.00 0.00 40.31 3.53
2936 3687 2.616842 CGAAAAACGCATTAGGCCCTAT 59.383 45.455 0.00 0.00 40.31 2.57
2937 3688 3.810941 CGAAAAACGCATTAGGCCCTATA 59.189 43.478 0.00 0.00 40.31 1.31
2938 3689 4.454504 CGAAAAACGCATTAGGCCCTATAT 59.545 41.667 0.00 0.00 40.31 0.86
2939 3690 5.640357 CGAAAAACGCATTAGGCCCTATATA 59.360 40.000 0.00 0.00 40.31 0.86
2940 3691 6.183360 CGAAAAACGCATTAGGCCCTATATAG 60.183 42.308 0.00 2.46 40.31 1.31
2941 3692 6.368779 AAAACGCATTAGGCCCTATATAGA 57.631 37.500 11.53 0.00 40.31 1.98
2942 3693 6.561519 AAACGCATTAGGCCCTATATAGAT 57.438 37.500 11.53 0.00 40.31 1.98
2943 3694 7.670605 AAACGCATTAGGCCCTATATAGATA 57.329 36.000 11.53 0.00 40.31 1.98
2944 3695 6.902771 ACGCATTAGGCCCTATATAGATAG 57.097 41.667 11.53 0.00 40.31 2.08
2945 3696 6.611785 ACGCATTAGGCCCTATATAGATAGA 58.388 40.000 11.53 0.00 37.21 1.98
2946 3697 7.067421 ACGCATTAGGCCCTATATAGATAGAA 58.933 38.462 11.53 0.00 37.21 2.10
2947 3698 7.231722 ACGCATTAGGCCCTATATAGATAGAAG 59.768 40.741 11.53 0.00 37.21 2.85
2948 3699 7.309499 CGCATTAGGCCCTATATAGATAGAAGG 60.309 44.444 11.53 3.94 37.21 3.46
2949 3700 7.730784 GCATTAGGCCCTATATAGATAGAAGGA 59.269 40.741 11.53 0.00 35.66 3.36
2950 3701 9.308000 CATTAGGCCCTATATAGATAGAAGGAG 57.692 40.741 11.53 0.00 37.81 3.69
2951 3702 6.288096 AGGCCCTATATAGATAGAAGGAGG 57.712 45.833 11.53 1.87 37.81 4.30
2952 3703 5.137082 AGGCCCTATATAGATAGAAGGAGGG 59.863 48.000 11.53 3.52 44.52 4.30
2953 3704 5.136392 GGCCCTATATAGATAGAAGGAGGGA 59.864 48.000 11.53 0.00 44.48 4.20
2954 3705 6.311735 GCCCTATATAGATAGAAGGAGGGAG 58.688 48.000 11.53 0.00 44.48 4.30
2955 3706 6.126008 GCCCTATATAGATAGAAGGAGGGAGT 60.126 46.154 11.53 0.00 44.48 3.85
2956 3707 7.073981 GCCCTATATAGATAGAAGGAGGGAGTA 59.926 44.444 11.53 0.00 44.48 2.59
3232 3993 4.393062 GCAAGAACTCTGTGCTGCTATTAA 59.607 41.667 0.00 0.00 35.36 1.40
3254 4015 8.891671 TTAAACCTATGTTTCGTCAGTAGTTT 57.108 30.769 0.00 0.00 43.50 2.66
3269 4030 7.402640 GTCAGTAGTTTCAGTTTCAGTTTCAG 58.597 38.462 0.00 0.00 0.00 3.02
3496 4260 5.773239 AAAACCGTCATGAACTGTATACG 57.227 39.130 0.00 0.00 0.00 3.06
3547 4312 5.357314 TGCATCAGGTGAGTAACTAGAGTAC 59.643 44.000 0.00 0.00 0.00 2.73
3572 4337 2.663188 GGGCACTCATCGATCGGC 60.663 66.667 16.41 9.27 0.00 5.54
3602 4367 1.239347 GTCTGAAACTGAAGGCACCC 58.761 55.000 0.00 0.00 0.00 4.61
3622 4387 3.312421 CCCGTTATTCAGTTGGTGCTATG 59.688 47.826 0.00 0.00 0.00 2.23
3632 4397 0.330941 TGGTGCTATGCCATGAACCA 59.669 50.000 0.00 3.62 35.39 3.67
3649 4414 8.662141 CCATGAACCATTTCAGATTCATTTTTC 58.338 33.333 0.00 0.00 45.07 2.29
3720 4485 6.845302 TCAATCAAGAATGTTGTGCTGATAC 58.155 36.000 0.00 0.00 0.00 2.24
3766 4531 2.612672 TGTACTAGCTCCGATGAGAACG 59.387 50.000 0.00 0.00 41.42 3.95
3800 4565 1.610624 GGGTCGACCTTGAAGATGCAA 60.611 52.381 32.52 0.00 35.85 4.08
3840 4615 2.202892 CGGCTTCTTCGGCCTACC 60.203 66.667 0.00 0.00 46.73 3.18
3856 4631 0.671251 TACCTTTTGCCCAACTTGCG 59.329 50.000 0.00 0.00 0.00 4.85
3939 4714 3.971702 GTTGGTCTGCCCCCAGCT 61.972 66.667 0.00 0.00 44.23 4.24
3943 4718 4.437587 GTCTGCCCCCAGCTGCAT 62.438 66.667 8.66 0.00 44.23 3.96
3953 4741 3.321648 AGCTGCATGGGACCGTCA 61.322 61.111 1.02 0.00 0.00 4.35
3958 4746 1.264045 TGCATGGGACCGTCAGATCA 61.264 55.000 0.00 0.00 0.00 2.92
3978 4766 3.511934 TCACAGCTCCTCTTCTACCTTTC 59.488 47.826 0.00 0.00 0.00 2.62
3983 4771 4.466015 AGCTCCTCTTCTACCTTTCTCTTG 59.534 45.833 0.00 0.00 0.00 3.02
4008 4796 2.267006 CTCGCCTCCAGCACACAT 59.733 61.111 0.00 0.00 44.04 3.21
4116 4928 2.281484 GCCACTCGCCAGTTGGAA 60.281 61.111 1.45 0.00 37.39 3.53
4119 4931 1.507141 CCACTCGCCAGTTGGAACAC 61.507 60.000 1.45 0.00 39.29 3.32
4184 4997 4.444164 GGACCCAGCAAAAAGGAAAAATCA 60.444 41.667 0.00 0.00 0.00 2.57
4191 5004 4.642437 GCAAAAAGGAAAAATCAAACCCCA 59.358 37.500 0.00 0.00 0.00 4.96
4193 5006 5.708736 AAAAGGAAAAATCAAACCCCACT 57.291 34.783 0.00 0.00 0.00 4.00
4212 5025 3.335729 GTCCCGACCACCCCCAAT 61.336 66.667 0.00 0.00 0.00 3.16
4226 5039 1.153369 CCAATGCCGATGACCTCGT 60.153 57.895 0.00 0.00 46.18 4.18
4248 5061 2.599281 TAGCCGCCGCTAGCCATA 60.599 61.111 9.66 0.00 46.08 2.74
4259 5072 1.269831 GCTAGCCATACTCGTTCCTGG 60.270 57.143 2.29 0.00 0.00 4.45
4275 5088 1.074775 TGGAAAGCCGCAGTTCCAT 59.925 52.632 19.50 0.00 46.58 3.41
4280 5093 1.032114 AAGCCGCAGTTCCATAAGCC 61.032 55.000 0.00 0.00 0.00 4.35
4293 5106 0.687427 ATAAGCCCACCCATGGTTGC 60.687 55.000 11.73 7.43 45.66 4.17
4327 5144 0.108945 GCCAGTGGAAGCTTTCATGC 60.109 55.000 15.20 10.62 0.00 4.06
4357 5174 1.275010 TGTAGCAAATCTGAGTGCCGA 59.725 47.619 11.30 0.00 41.88 5.54
4422 5239 3.512516 GACCGCCATTGCAGCTCC 61.513 66.667 0.00 0.00 37.32 4.70
4426 5243 2.514592 GCCATTGCAGCTCCGCTA 60.515 61.111 0.00 0.00 36.40 4.26
4433 5250 1.009449 GCAGCTCCGCTAGACTACG 60.009 63.158 0.00 0.00 36.40 3.51
4472 5289 2.085343 ATGGTTGCAGCTCCCCTTGT 62.085 55.000 0.00 0.00 0.00 3.16
4475 5292 0.324943 GTTGCAGCTCCCCTTGTCTA 59.675 55.000 0.00 0.00 0.00 2.59
4477 5294 1.153269 GCAGCTCCCCTTGTCTAGC 60.153 63.158 0.00 0.00 35.16 3.42
4486 5303 1.134670 CCCTTGTCTAGCTGTAGCACC 60.135 57.143 6.65 0.00 45.16 5.01
4506 5323 4.634703 ATGCCGGCGGTTGTGTCA 62.635 61.111 28.82 16.04 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.026182 TCAGCCATTCGCCATGTGTC 61.026 55.000 0.00 0.00 38.78 3.67
1 2 1.002257 TCAGCCATTCGCCATGTGT 60.002 52.632 0.00 0.00 38.78 3.72
2 3 0.745486 TCTCAGCCATTCGCCATGTG 60.745 55.000 0.00 0.00 38.78 3.21
3 4 0.463295 CTCTCAGCCATTCGCCATGT 60.463 55.000 0.00 0.00 38.78 3.21
4 5 1.783031 GCTCTCAGCCATTCGCCATG 61.783 60.000 0.00 0.00 38.78 3.66
5 6 1.525535 GCTCTCAGCCATTCGCCAT 60.526 57.895 0.00 0.00 38.78 4.40
6 7 2.124983 GCTCTCAGCCATTCGCCA 60.125 61.111 0.00 0.00 38.78 5.69
7 8 2.124983 TGCTCTCAGCCATTCGCC 60.125 61.111 0.00 0.00 41.51 5.54
8 9 2.806856 CGTGCTCTCAGCCATTCGC 61.807 63.158 0.00 0.00 41.51 4.70
9 10 1.416813 GACGTGCTCTCAGCCATTCG 61.417 60.000 0.00 0.00 41.51 3.34
10 11 0.390340 TGACGTGCTCTCAGCCATTC 60.390 55.000 0.00 0.00 41.51 2.67
11 12 0.035317 TTGACGTGCTCTCAGCCATT 59.965 50.000 0.00 0.00 41.51 3.16
12 13 0.390866 CTTGACGTGCTCTCAGCCAT 60.391 55.000 0.00 0.00 41.51 4.40
13 14 1.005748 CTTGACGTGCTCTCAGCCA 60.006 57.895 0.00 0.00 41.51 4.75
14 15 1.005630 ACTTGACGTGCTCTCAGCC 60.006 57.895 0.00 0.00 41.51 4.85
15 16 1.287730 CCACTTGACGTGCTCTCAGC 61.288 60.000 0.00 0.00 42.42 4.26
16 17 1.287730 GCCACTTGACGTGCTCTCAG 61.288 60.000 0.00 0.00 42.42 3.35
17 18 1.300931 GCCACTTGACGTGCTCTCA 60.301 57.895 0.00 0.00 42.42 3.27
18 19 2.375766 CGCCACTTGACGTGCTCTC 61.376 63.158 0.00 0.00 42.42 3.20
19 20 2.356313 CGCCACTTGACGTGCTCT 60.356 61.111 0.00 0.00 42.42 4.09
20 21 4.077188 GCGCCACTTGACGTGCTC 62.077 66.667 0.00 0.00 42.42 4.26
21 22 4.609018 AGCGCCACTTGACGTGCT 62.609 61.111 2.29 0.00 42.42 4.40
22 23 4.374702 CAGCGCCACTTGACGTGC 62.375 66.667 2.29 0.00 42.42 5.34
23 24 1.959899 GATCAGCGCCACTTGACGTG 61.960 60.000 2.29 0.00 43.41 4.49
24 25 1.738099 GATCAGCGCCACTTGACGT 60.738 57.895 2.29 0.00 0.00 4.34
25 26 1.086067 ATGATCAGCGCCACTTGACG 61.086 55.000 2.29 0.00 0.00 4.35
26 27 1.089920 AATGATCAGCGCCACTTGAC 58.910 50.000 2.29 0.00 0.00 3.18
27 28 1.089112 CAATGATCAGCGCCACTTGA 58.911 50.000 2.29 0.40 0.00 3.02
28 29 0.806868 ACAATGATCAGCGCCACTTG 59.193 50.000 2.29 1.38 0.00 3.16
29 30 0.806868 CACAATGATCAGCGCCACTT 59.193 50.000 2.29 0.00 0.00 3.16
30 31 0.036105 TCACAATGATCAGCGCCACT 60.036 50.000 2.29 0.00 0.00 4.00
31 32 0.376152 CTCACAATGATCAGCGCCAC 59.624 55.000 2.29 0.00 0.00 5.01
32 33 0.745486 CCTCACAATGATCAGCGCCA 60.745 55.000 2.29 0.00 0.00 5.69
33 34 0.745845 ACCTCACAATGATCAGCGCC 60.746 55.000 2.29 0.00 0.00 6.53
34 35 1.063174 GAACCTCACAATGATCAGCGC 59.937 52.381 0.00 0.00 0.00 5.92
35 36 1.667724 GGAACCTCACAATGATCAGCG 59.332 52.381 0.09 0.00 0.00 5.18
36 37 2.681848 CAGGAACCTCACAATGATCAGC 59.318 50.000 0.09 0.00 0.00 4.26
37 38 4.212143 TCAGGAACCTCACAATGATCAG 57.788 45.455 0.09 0.00 0.00 2.90
38 39 4.566278 CCTTCAGGAACCTCACAATGATCA 60.566 45.833 0.00 0.00 37.39 2.92
39 40 3.944015 CCTTCAGGAACCTCACAATGATC 59.056 47.826 0.00 0.00 37.39 2.92
40 41 3.588842 TCCTTCAGGAACCTCACAATGAT 59.411 43.478 0.00 0.00 42.18 2.45
41 42 2.978978 TCCTTCAGGAACCTCACAATGA 59.021 45.455 0.00 0.00 42.18 2.57
42 43 3.341823 CTCCTTCAGGAACCTCACAATG 58.658 50.000 0.00 0.00 44.91 2.82
43 44 2.290577 GCTCCTTCAGGAACCTCACAAT 60.291 50.000 0.00 0.00 44.91 2.71
44 45 1.072331 GCTCCTTCAGGAACCTCACAA 59.928 52.381 0.00 0.00 44.91 3.33
45 46 0.687354 GCTCCTTCAGGAACCTCACA 59.313 55.000 0.00 0.00 44.91 3.58
46 47 0.390472 CGCTCCTTCAGGAACCTCAC 60.390 60.000 0.00 0.00 44.91 3.51
47 48 1.975327 CGCTCCTTCAGGAACCTCA 59.025 57.895 0.00 0.00 44.91 3.86
48 49 1.448717 GCGCTCCTTCAGGAACCTC 60.449 63.158 0.00 0.00 44.91 3.85
49 50 1.893919 GAGCGCTCCTTCAGGAACCT 61.894 60.000 27.22 0.00 44.91 3.50
50 51 1.448717 GAGCGCTCCTTCAGGAACC 60.449 63.158 27.22 0.00 44.91 3.62
51 52 1.807573 CGAGCGCTCCTTCAGGAAC 60.808 63.158 30.66 3.44 44.91 3.62
52 53 1.816863 AACGAGCGCTCCTTCAGGAA 61.817 55.000 30.66 0.00 44.91 3.36
53 54 0.963856 TAACGAGCGCTCCTTCAGGA 60.964 55.000 30.66 8.40 43.08 3.86
54 55 0.108804 TTAACGAGCGCTCCTTCAGG 60.109 55.000 30.66 17.99 0.00 3.86
55 56 0.992802 GTTAACGAGCGCTCCTTCAG 59.007 55.000 30.66 18.71 0.00 3.02
56 57 0.601558 AGTTAACGAGCGCTCCTTCA 59.398 50.000 30.66 14.71 0.00 3.02
57 58 2.159407 ACTAGTTAACGAGCGCTCCTTC 60.159 50.000 30.66 14.44 0.00 3.46
58 59 1.817447 ACTAGTTAACGAGCGCTCCTT 59.183 47.619 30.66 26.03 0.00 3.36
59 60 1.461559 ACTAGTTAACGAGCGCTCCT 58.538 50.000 30.66 22.52 0.00 3.69
60 61 1.918609 CAACTAGTTAACGAGCGCTCC 59.081 52.381 30.66 16.60 0.00 4.70
61 62 1.320852 GCAACTAGTTAACGAGCGCTC 59.679 52.381 27.64 27.64 0.00 5.03
62 63 1.067776 AGCAACTAGTTAACGAGCGCT 60.068 47.619 20.45 20.45 0.00 5.92
63 64 1.320852 GAGCAACTAGTTAACGAGCGC 59.679 52.381 14.82 16.38 0.00 5.92
64 65 2.847133 GAGAGCAACTAGTTAACGAGCG 59.153 50.000 14.82 8.20 0.00 5.03
65 66 4.099380 AGAGAGCAACTAGTTAACGAGC 57.901 45.455 14.82 7.28 0.00 5.03
66 67 5.298197 TGAGAGAGCAACTAGTTAACGAG 57.702 43.478 13.50 13.50 0.00 4.18
67 68 5.899120 ATGAGAGAGCAACTAGTTAACGA 57.101 39.130 8.04 0.00 0.00 3.85
68 69 6.952935 AAATGAGAGAGCAACTAGTTAACG 57.047 37.500 8.04 0.00 0.00 3.18
69 70 7.116519 ACGAAAATGAGAGAGCAACTAGTTAAC 59.883 37.037 8.04 3.72 0.00 2.01
70 71 7.116376 CACGAAAATGAGAGAGCAACTAGTTAA 59.884 37.037 8.04 0.00 0.00 2.01
71 72 6.586463 CACGAAAATGAGAGAGCAACTAGTTA 59.414 38.462 8.04 0.00 0.00 2.24
72 73 5.406780 CACGAAAATGAGAGAGCAACTAGTT 59.593 40.000 1.12 1.12 0.00 2.24
73 74 4.926238 CACGAAAATGAGAGAGCAACTAGT 59.074 41.667 0.00 0.00 0.00 2.57
74 75 4.926238 ACACGAAAATGAGAGAGCAACTAG 59.074 41.667 0.00 0.00 0.00 2.57
75 76 4.883083 ACACGAAAATGAGAGAGCAACTA 58.117 39.130 0.00 0.00 0.00 2.24
76 77 3.733337 ACACGAAAATGAGAGAGCAACT 58.267 40.909 0.00 0.00 0.00 3.16
77 78 5.786401 ATACACGAAAATGAGAGAGCAAC 57.214 39.130 0.00 0.00 0.00 4.17
78 79 6.801539 AAATACACGAAAATGAGAGAGCAA 57.198 33.333 0.00 0.00 0.00 3.91
79 80 6.801539 AAAATACACGAAAATGAGAGAGCA 57.198 33.333 0.00 0.00 0.00 4.26
80 81 7.298122 TGAAAAATACACGAAAATGAGAGAGC 58.702 34.615 0.00 0.00 0.00 4.09
81 82 9.270576 CATGAAAAATACACGAAAATGAGAGAG 57.729 33.333 0.00 0.00 0.00 3.20
82 83 8.783093 ACATGAAAAATACACGAAAATGAGAGA 58.217 29.630 0.00 0.00 0.00 3.10
83 84 8.843733 CACATGAAAAATACACGAAAATGAGAG 58.156 33.333 0.00 0.00 0.00 3.20
84 85 8.349245 ACACATGAAAAATACACGAAAATGAGA 58.651 29.630 0.00 0.00 0.00 3.27
85 86 8.419435 CACACATGAAAAATACACGAAAATGAG 58.581 33.333 0.00 0.00 0.00 2.90
114 115 3.121030 CTCTTCACCGCTTGGCCG 61.121 66.667 0.00 0.00 35.53 6.13
119 120 1.374758 CGAAGCCTCTTCACCGCTT 60.375 57.895 7.27 0.00 45.24 4.68
126 127 3.131396 TCACAAGAAACGAAGCCTCTTC 58.869 45.455 0.00 0.00 30.63 2.87
137 138 4.821805 TGAGGAGTCCAAATCACAAGAAAC 59.178 41.667 12.86 0.00 0.00 2.78
141 142 4.013267 AGTGAGGAGTCCAAATCACAAG 57.987 45.455 24.41 0.00 43.55 3.16
167 171 4.153475 GCGTTCATTAACTAGTTGCTCCAA 59.847 41.667 18.56 4.31 33.15 3.53
168 172 3.682858 GCGTTCATTAACTAGTTGCTCCA 59.317 43.478 18.56 0.00 33.15 3.86
176 180 6.627690 TTTCGAAGAGCGTTCATTAACTAG 57.372 37.500 1.01 0.00 41.80 2.57
184 188 0.033504 AGGCTTTCGAAGAGCGTTCA 59.966 50.000 19.18 0.00 41.03 3.18
187 191 1.079750 GGAGGCTTTCGAAGAGCGT 60.080 57.895 19.90 19.90 41.03 5.07
204 208 3.632145 GCCCACACTAAGTAATCATTGGG 59.368 47.826 0.00 0.00 44.65 4.12
205 209 4.526970 AGCCCACACTAAGTAATCATTGG 58.473 43.478 0.00 0.00 0.00 3.16
206 210 7.047891 TCTTAGCCCACACTAAGTAATCATTG 58.952 38.462 10.25 0.00 46.13 2.82
209 213 5.395324 GCTCTTAGCCCACACTAAGTAATCA 60.395 44.000 10.25 0.00 46.13 2.57
215 219 3.265791 CTTGCTCTTAGCCCACACTAAG 58.734 50.000 5.19 5.19 46.99 2.18
220 224 4.722193 GCTTGCTCTTAGCCCACA 57.278 55.556 0.00 0.00 41.51 4.17
240 244 2.583593 GGCTAAGAGTGCGCCGAG 60.584 66.667 4.18 0.00 33.64 4.63
243 247 4.821589 AGCGGCTAAGAGTGCGCC 62.822 66.667 4.18 0.00 40.40 6.53
244 248 3.558411 CAGCGGCTAAGAGTGCGC 61.558 66.667 0.26 0.00 0.00 6.09
245 249 2.125912 ACAGCGGCTAAGAGTGCG 60.126 61.111 0.26 0.00 0.00 5.34
246 250 0.460987 ATGACAGCGGCTAAGAGTGC 60.461 55.000 0.26 0.00 0.00 4.40
247 251 1.284657 CATGACAGCGGCTAAGAGTG 58.715 55.000 0.26 0.00 0.00 3.51
248 252 0.176680 CCATGACAGCGGCTAAGAGT 59.823 55.000 0.26 0.00 0.00 3.24
249 253 0.531532 CCCATGACAGCGGCTAAGAG 60.532 60.000 0.26 0.00 0.00 2.85
250 254 1.264749 ACCCATGACAGCGGCTAAGA 61.265 55.000 0.26 0.00 0.00 2.10
251 255 0.811616 GACCCATGACAGCGGCTAAG 60.812 60.000 0.26 0.00 0.00 2.18
252 256 1.220749 GACCCATGACAGCGGCTAA 59.779 57.895 0.26 0.00 0.00 3.09
253 257 1.337384 ATGACCCATGACAGCGGCTA 61.337 55.000 0.26 0.00 0.00 3.93
254 258 2.673200 ATGACCCATGACAGCGGCT 61.673 57.895 0.00 0.00 0.00 5.52
260 264 2.754552 GCTAAAAGCATGACCCATGACA 59.245 45.455 10.77 0.00 43.81 3.58
262 266 2.016318 CGCTAAAAGCATGACCCATGA 58.984 47.619 10.77 0.00 43.81 3.07
265 269 0.322456 AGCGCTAAAAGCATGACCCA 60.322 50.000 8.99 0.00 42.58 4.51
267 271 0.378610 GGAGCGCTAAAAGCATGACC 59.621 55.000 11.50 0.00 42.58 4.02
271 275 1.078426 ACGGGAGCGCTAAAAGCAT 60.078 52.632 11.50 0.00 42.58 3.79
272 276 2.032634 CACGGGAGCGCTAAAAGCA 61.033 57.895 11.50 0.00 42.58 3.91
276 280 3.659089 GAGGCACGGGAGCGCTAAA 62.659 63.158 11.50 0.00 38.16 1.85
346 628 0.673644 ATTTTCGAGAGGCACGGGTG 60.674 55.000 0.00 0.00 0.00 4.61
347 629 0.899720 TATTTTCGAGAGGCACGGGT 59.100 50.000 0.00 0.00 0.00 5.28
375 658 5.066505 GCCTCTCACAGAAGAAAAAGAAACA 59.933 40.000 0.00 0.00 0.00 2.83
376 659 5.066505 TGCCTCTCACAGAAGAAAAAGAAAC 59.933 40.000 0.00 0.00 0.00 2.78
377 660 5.066505 GTGCCTCTCACAGAAGAAAAAGAAA 59.933 40.000 0.00 0.00 44.98 2.52
378 661 4.576463 GTGCCTCTCACAGAAGAAAAAGAA 59.424 41.667 0.00 0.00 44.98 2.52
380 663 3.059325 CGTGCCTCTCACAGAAGAAAAAG 60.059 47.826 0.00 0.00 45.92 2.27
388 672 0.468226 AAAACCGTGCCTCTCACAGA 59.532 50.000 0.00 0.00 45.92 3.41
401 685 6.866770 TGAGAGACATAGTGAAAGTAAAACCG 59.133 38.462 0.00 0.00 0.00 4.44
408 692 7.901029 TCATTTCTGAGAGACATAGTGAAAGT 58.099 34.615 0.00 0.00 0.00 2.66
458 742 4.015872 ACCGTGCCTCTAATGAAAGAAA 57.984 40.909 0.00 0.00 0.00 2.52
461 745 4.475944 CAAAACCGTGCCTCTAATGAAAG 58.524 43.478 0.00 0.00 0.00 2.62
464 748 1.810151 GCAAAACCGTGCCTCTAATGA 59.190 47.619 0.00 0.00 38.66 2.57
465 749 1.812571 AGCAAAACCGTGCCTCTAATG 59.187 47.619 0.00 0.00 46.14 1.90
466 750 2.200373 AGCAAAACCGTGCCTCTAAT 57.800 45.000 0.00 0.00 46.14 1.73
467 751 1.975660 AAGCAAAACCGTGCCTCTAA 58.024 45.000 0.00 0.00 46.14 2.10
468 752 1.877443 GAAAGCAAAACCGTGCCTCTA 59.123 47.619 0.00 0.00 46.14 2.43
470 754 0.660300 CGAAAGCAAAACCGTGCCTC 60.660 55.000 0.00 0.00 46.14 4.70
474 758 3.246699 TCTCTTACGAAAGCAAAACCGTG 59.753 43.478 0.00 0.00 36.58 4.94
487 771 1.968017 ACGCCCGTGTCTCTTACGA 60.968 57.895 0.00 0.00 43.82 3.43
489 773 2.092882 GCACGCCCGTGTCTCTTAC 61.093 63.158 20.25 0.36 46.90 2.34
496 780 2.435938 CAATAGGCACGCCCGTGT 60.436 61.111 20.25 6.00 46.90 4.49
500 784 1.807226 GTTTCCAATAGGCACGCCC 59.193 57.895 3.95 0.00 36.58 6.13
507 791 2.352388 TCGAAAGCCGTTTCCAATAGG 58.648 47.619 0.00 0.00 39.22 2.57
508 792 4.413495 TTTCGAAAGCCGTTTCCAATAG 57.587 40.909 6.47 0.00 39.22 1.73
510 794 3.552068 CCTTTTCGAAAGCCGTTTCCAAT 60.552 43.478 10.98 0.00 39.22 3.16
518 802 0.891904 TTCCCCCTTTTCGAAAGCCG 60.892 55.000 10.98 4.07 40.25 5.52
519 803 1.334160 TTTCCCCCTTTTCGAAAGCC 58.666 50.000 10.98 0.00 0.00 4.35
525 810 6.152831 AGAGAATATGTTTTTCCCCCTTTTCG 59.847 38.462 0.00 0.00 0.00 3.46
532 817 6.206829 CCCGAATAGAGAATATGTTTTTCCCC 59.793 42.308 0.00 0.00 0.00 4.81
533 818 6.771267 ACCCGAATAGAGAATATGTTTTTCCC 59.229 38.462 0.00 0.00 0.00 3.97
534 819 7.803279 ACCCGAATAGAGAATATGTTTTTCC 57.197 36.000 0.00 0.00 0.00 3.13
541 826 8.338259 CAGACAAAAACCCGAATAGAGAATATG 58.662 37.037 0.00 0.00 0.00 1.78
544 829 5.648092 CCAGACAAAAACCCGAATAGAGAAT 59.352 40.000 0.00 0.00 0.00 2.40
588 874 5.007039 CGTGTTGATAGATTTTGACGAACG 58.993 41.667 0.00 0.00 0.00 3.95
589 875 5.313623 CCGTGTTGATAGATTTTGACGAAC 58.686 41.667 0.00 0.00 0.00 3.95
593 879 5.817816 AGATCCCGTGTTGATAGATTTTGAC 59.182 40.000 0.00 0.00 0.00 3.18
600 886 5.655090 TCAAACTAGATCCCGTGTTGATAGA 59.345 40.000 0.00 0.00 0.00 1.98
610 896 5.521906 TGAGATCTTCAAACTAGATCCCG 57.478 43.478 0.00 0.00 45.92 5.14
612 898 5.233263 GCGTTGAGATCTTCAAACTAGATCC 59.767 44.000 0.00 3.06 46.85 3.36
629 915 1.128692 GGTTGGATTTCTCGCGTTGAG 59.871 52.381 5.77 0.00 46.72 3.02
630 916 1.153353 GGTTGGATTTCTCGCGTTGA 58.847 50.000 5.77 2.87 0.00 3.18
631 917 0.179225 CGGTTGGATTTCTCGCGTTG 60.179 55.000 5.77 0.00 0.00 4.10
632 918 0.601841 ACGGTTGGATTTCTCGCGTT 60.602 50.000 5.77 0.00 0.00 4.84
649 936 2.969443 AATCTCAAGCCGTTTTCACG 57.031 45.000 0.00 0.00 46.71 4.35
652 939 3.565516 GTCCAAATCTCAAGCCGTTTTC 58.434 45.455 0.00 0.00 0.00 2.29
660 947 0.443869 CCGTGCGTCCAAATCTCAAG 59.556 55.000 0.00 0.00 0.00 3.02
747 1035 7.227156 AGGCGAAATCATTAATTGAGGAGTAT 58.773 34.615 0.00 0.00 37.89 2.12
752 1040 7.832503 AAAAAGGCGAAATCATTAATTGAGG 57.167 32.000 0.00 0.00 37.89 3.86
786 1074 9.624697 CGAAATGAATGAAAAAGAAGGATGTAA 57.375 29.630 0.00 0.00 0.00 2.41
871 1165 2.687935 GGAGCCAGTGTTGTCTCAAAAA 59.312 45.455 0.00 0.00 0.00 1.94
872 1166 2.092429 AGGAGCCAGTGTTGTCTCAAAA 60.092 45.455 0.00 0.00 0.00 2.44
873 1167 1.490490 AGGAGCCAGTGTTGTCTCAAA 59.510 47.619 0.00 0.00 0.00 2.69
874 1168 1.131638 AGGAGCCAGTGTTGTCTCAA 58.868 50.000 0.00 0.00 0.00 3.02
875 1169 1.131638 AAGGAGCCAGTGTTGTCTCA 58.868 50.000 0.00 0.00 0.00 3.27
876 1170 2.147150 GAAAGGAGCCAGTGTTGTCTC 58.853 52.381 0.00 0.00 0.00 3.36
877 1171 1.771255 AGAAAGGAGCCAGTGTTGTCT 59.229 47.619 0.00 0.00 0.00 3.41
878 1172 2.262423 AGAAAGGAGCCAGTGTTGTC 57.738 50.000 0.00 0.00 0.00 3.18
879 1173 3.477530 GTTAGAAAGGAGCCAGTGTTGT 58.522 45.455 0.00 0.00 0.00 3.32
880 1174 2.814336 GGTTAGAAAGGAGCCAGTGTTG 59.186 50.000 0.00 0.00 0.00 3.33
881 1175 2.550208 CGGTTAGAAAGGAGCCAGTGTT 60.550 50.000 0.00 0.00 0.00 3.32
882 1176 1.002087 CGGTTAGAAAGGAGCCAGTGT 59.998 52.381 0.00 0.00 0.00 3.55
952 1249 2.407428 GGTTTAGCCCAAGGAGCGC 61.407 63.158 0.00 0.00 34.64 5.92
1050 1362 0.108615 CCAGACCAGACCAGTAAGCG 60.109 60.000 0.00 0.00 0.00 4.68
1238 1550 1.154131 CACTCCAGCTCAGTCGACG 60.154 63.158 10.46 5.48 0.00 5.12
1261 1573 6.101332 GCTCCATGCACAATTAAGAATGAAA 58.899 36.000 0.00 0.00 42.31 2.69
1283 1595 4.458295 CAGAGAAGACAATTCCACATTGCT 59.542 41.667 0.00 0.00 32.55 3.91
1285 1597 6.349115 CCTTCAGAGAAGACAATTCCACATTG 60.349 42.308 8.26 0.00 35.29 2.82
1341 1659 4.033014 CCGAATAGCTCTTCCTTTTTCGTC 59.967 45.833 6.28 0.00 0.00 4.20
1342 1660 3.933332 CCGAATAGCTCTTCCTTTTTCGT 59.067 43.478 6.28 0.00 0.00 3.85
1343 1661 4.181578 TCCGAATAGCTCTTCCTTTTTCG 58.818 43.478 6.28 0.00 0.00 3.46
1344 1662 5.817816 TCATCCGAATAGCTCTTCCTTTTTC 59.182 40.000 6.28 0.00 0.00 2.29
1345 1663 5.586643 GTCATCCGAATAGCTCTTCCTTTTT 59.413 40.000 6.28 0.00 0.00 1.94
1364 1683 4.713792 ACTCCTATTCAATGGGGTCATC 57.286 45.455 0.00 0.00 29.66 2.92
1460 1779 2.698274 TCAACTGTGACTGAACTGCCTA 59.302 45.455 0.00 0.00 0.00 3.93
1461 1780 1.486310 TCAACTGTGACTGAACTGCCT 59.514 47.619 0.00 0.00 0.00 4.75
1462 1781 1.869767 CTCAACTGTGACTGAACTGCC 59.130 52.381 0.00 0.00 0.00 4.85
1463 1782 1.262683 GCTCAACTGTGACTGAACTGC 59.737 52.381 0.00 0.00 0.00 4.40
1464 1783 1.869767 GGCTCAACTGTGACTGAACTG 59.130 52.381 0.00 0.00 0.00 3.16
1568 1887 2.500098 CCCACTCATCCGTAAGAAAGGA 59.500 50.000 0.00 0.00 41.30 3.36
1577 1896 1.003355 CAACAGCCCACTCATCCGT 60.003 57.895 0.00 0.00 0.00 4.69
1627 1946 5.886960 AAAGTATGGAGTCAAGCACAATC 57.113 39.130 0.00 0.00 0.00 2.67
1820 2142 4.853924 ACTGTAAATGCCCTTCAAGTTG 57.146 40.909 0.00 0.00 0.00 3.16
1926 2254 1.352352 ACACAAAGATCCCCCTCACTG 59.648 52.381 0.00 0.00 0.00 3.66
1935 2263 5.874895 GGTAAGTACCAACACAAAGATCC 57.125 43.478 2.47 0.00 45.73 3.36
2130 2674 0.320596 ACATGGGTGGCAAAAATGCG 60.321 50.000 0.00 0.00 35.24 4.73
2148 2692 5.121768 ACACGTATTTAAGCACATGGAAGAC 59.878 40.000 0.00 0.00 0.00 3.01
2229 2774 6.768861 GGCACACAGTTAACCATAATACCATA 59.231 38.462 0.88 0.00 0.00 2.74
2302 2850 2.146342 CCTAGAACAAGTGCACCACTG 58.854 52.381 14.63 11.32 44.62 3.66
2305 2853 1.765904 TGTCCTAGAACAAGTGCACCA 59.234 47.619 14.63 0.00 0.00 4.17
2450 3070 8.958119 TCATCACATACTATAAGGTTGGTTTC 57.042 34.615 0.00 0.00 0.00 2.78
2466 3131 3.072038 CCTCCTCCTGCAATCATCACATA 59.928 47.826 0.00 0.00 0.00 2.29
2500 3178 4.275810 CAGATTCTGGATGGATGTTTGGT 58.724 43.478 5.73 0.00 0.00 3.67
2508 3186 4.581309 AGAAAAGCAGATTCTGGATGGA 57.419 40.909 15.28 0.00 35.85 3.41
2513 3191 4.986659 CACCAAAAGAAAAGCAGATTCTGG 59.013 41.667 15.28 0.00 37.22 3.86
2514 3192 5.594926 ACACCAAAAGAAAAGCAGATTCTG 58.405 37.500 9.40 9.40 37.22 3.02
2518 3196 6.655078 ACATACACCAAAAGAAAAGCAGAT 57.345 33.333 0.00 0.00 0.00 2.90
2646 3397 4.287067 AGGGTGGCGTATTGATATGAATCT 59.713 41.667 0.00 0.00 32.93 2.40
2718 3469 5.042979 ACCCTATATAGATGGAAGGAGGGAG 60.043 48.000 11.53 0.00 44.48 4.30
2719 3470 4.870361 ACCCTATATAGATGGAAGGAGGGA 59.130 45.833 11.53 0.00 44.48 4.20
2720 3471 5.042979 AGACCCTATATAGATGGAAGGAGGG 60.043 48.000 11.53 4.91 46.66 4.30
2721 3472 6.098716 AGACCCTATATAGATGGAAGGAGG 57.901 45.833 11.53 3.20 0.00 4.30
2723 3474 7.565398 GCATTAGACCCTATATAGATGGAAGGA 59.435 40.741 11.53 0.00 0.00 3.36
2724 3475 7.470702 CGCATTAGACCCTATATAGATGGAAGG 60.471 44.444 11.53 5.26 0.00 3.46
2725 3476 7.068839 ACGCATTAGACCCTATATAGATGGAAG 59.931 40.741 11.53 0.00 0.00 3.46
2726 3477 6.895756 ACGCATTAGACCCTATATAGATGGAA 59.104 38.462 11.53 0.00 0.00 3.53
2727 3478 6.432581 ACGCATTAGACCCTATATAGATGGA 58.567 40.000 11.53 0.00 0.00 3.41
2728 3479 6.716934 ACGCATTAGACCCTATATAGATGG 57.283 41.667 11.53 7.34 0.00 3.51
2729 3480 9.436957 AAAAACGCATTAGACCCTATATAGATG 57.563 33.333 11.53 6.87 0.00 2.90
2752 3503 7.520937 GCCAATAGTCAAAGACGGTCTTAAAAA 60.521 37.037 22.67 9.07 35.27 1.94
2753 3504 6.072893 GCCAATAGTCAAAGACGGTCTTAAAA 60.073 38.462 22.67 9.31 35.27 1.52
2754 3505 5.410439 GCCAATAGTCAAAGACGGTCTTAAA 59.590 40.000 22.67 11.65 35.27 1.52
2755 3506 4.933400 GCCAATAGTCAAAGACGGTCTTAA 59.067 41.667 22.67 11.99 35.27 1.85
2756 3507 4.020928 TGCCAATAGTCAAAGACGGTCTTA 60.021 41.667 22.67 8.18 35.27 2.10
2757 3508 3.244422 TGCCAATAGTCAAAGACGGTCTT 60.244 43.478 17.38 17.38 38.59 3.01
2758 3509 2.301870 TGCCAATAGTCAAAGACGGTCT 59.698 45.455 4.45 4.45 37.67 3.85
2759 3510 2.695359 TGCCAATAGTCAAAGACGGTC 58.305 47.619 0.00 0.00 37.67 4.79
2760 3511 2.851263 TGCCAATAGTCAAAGACGGT 57.149 45.000 0.00 0.00 37.67 4.83
2761 3512 2.420022 CCTTGCCAATAGTCAAAGACGG 59.580 50.000 0.00 0.00 37.67 4.79
2762 3513 3.074412 ACCTTGCCAATAGTCAAAGACG 58.926 45.455 0.00 0.00 37.67 4.18
2763 3514 6.569179 TTAACCTTGCCAATAGTCAAAGAC 57.431 37.500 0.00 0.00 0.00 3.01
2764 3515 8.107095 ACTATTAACCTTGCCAATAGTCAAAGA 58.893 33.333 0.00 0.00 39.96 2.52
2765 3516 8.281212 ACTATTAACCTTGCCAATAGTCAAAG 57.719 34.615 0.00 0.00 39.96 2.77
2766 3517 9.169592 GTACTATTAACCTTGCCAATAGTCAAA 57.830 33.333 8.94 0.00 41.97 2.69
2767 3518 8.322828 TGTACTATTAACCTTGCCAATAGTCAA 58.677 33.333 8.94 0.00 41.97 3.18
2768 3519 7.853299 TGTACTATTAACCTTGCCAATAGTCA 58.147 34.615 8.94 5.93 41.97 3.41
2769 3520 8.774586 CATGTACTATTAACCTTGCCAATAGTC 58.225 37.037 8.94 4.01 41.97 2.59
2770 3521 8.491134 TCATGTACTATTAACCTTGCCAATAGT 58.509 33.333 10.17 10.17 44.01 2.12
2771 3522 8.774586 GTCATGTACTATTAACCTTGCCAATAG 58.225 37.037 0.00 0.00 37.95 1.73
2772 3523 8.268605 TGTCATGTACTATTAACCTTGCCAATA 58.731 33.333 0.00 0.00 0.00 1.90
2773 3524 7.116075 TGTCATGTACTATTAACCTTGCCAAT 58.884 34.615 0.00 0.00 0.00 3.16
2774 3525 6.477253 TGTCATGTACTATTAACCTTGCCAA 58.523 36.000 0.00 0.00 0.00 4.52
2775 3526 6.056090 TGTCATGTACTATTAACCTTGCCA 57.944 37.500 0.00 0.00 0.00 4.92
2776 3527 6.513393 GCATGTCATGTACTATTAACCTTGCC 60.513 42.308 14.26 0.00 0.00 4.52
2777 3528 6.038161 TGCATGTCATGTACTATTAACCTTGC 59.962 38.462 14.26 0.00 0.00 4.01
2778 3529 7.552458 TGCATGTCATGTACTATTAACCTTG 57.448 36.000 14.26 0.00 0.00 3.61
2779 3530 9.845740 TTATGCATGTCATGTACTATTAACCTT 57.154 29.630 10.16 0.00 36.63 3.50
2784 3535 9.995003 TCACATTATGCATGTCATGTACTATTA 57.005 29.630 10.16 0.00 43.17 0.98
2785 3536 8.907222 TCACATTATGCATGTCATGTACTATT 57.093 30.769 10.16 0.00 43.17 1.73
2786 3537 8.907222 TTCACATTATGCATGTCATGTACTAT 57.093 30.769 10.16 4.57 43.17 2.12
2787 3538 8.729805 TTTCACATTATGCATGTCATGTACTA 57.270 30.769 10.16 2.43 43.17 1.82
2788 3539 7.628769 TTTCACATTATGCATGTCATGTACT 57.371 32.000 10.16 3.51 43.17 2.73
2789 3540 8.861033 ATTTTCACATTATGCATGTCATGTAC 57.139 30.769 10.16 0.00 43.17 2.90
2824 3575 9.261180 TCATATTCGTATGTGAAAGGAGATTTC 57.739 33.333 0.00 0.00 46.37 2.17
2825 3576 9.046296 GTCATATTCGTATGTGAAAGGAGATTT 57.954 33.333 3.13 0.00 34.24 2.17
2826 3577 7.382488 CGTCATATTCGTATGTGAAAGGAGATT 59.618 37.037 3.13 0.00 34.24 2.40
2827 3578 6.863645 CGTCATATTCGTATGTGAAAGGAGAT 59.136 38.462 3.13 0.00 34.24 2.75
2828 3579 6.206498 CGTCATATTCGTATGTGAAAGGAGA 58.794 40.000 3.13 0.00 34.24 3.71
2829 3580 5.402568 CCGTCATATTCGTATGTGAAAGGAG 59.597 44.000 14.55 2.60 35.69 3.69
2830 3581 5.163488 ACCGTCATATTCGTATGTGAAAGGA 60.163 40.000 21.56 0.00 36.42 3.36
2831 3582 5.047847 ACCGTCATATTCGTATGTGAAAGG 58.952 41.667 16.64 16.64 37.66 3.11
2832 3583 7.619366 GCATACCGTCATATTCGTATGTGAAAG 60.619 40.741 3.13 1.45 34.24 2.62
2833 3584 6.144886 GCATACCGTCATATTCGTATGTGAAA 59.855 38.462 3.13 0.00 34.24 2.69
2834 3585 5.631929 GCATACCGTCATATTCGTATGTGAA 59.368 40.000 3.13 0.00 34.24 3.18
2835 3586 5.048294 AGCATACCGTCATATTCGTATGTGA 60.048 40.000 0.00 0.00 31.72 3.58
2836 3587 5.161358 AGCATACCGTCATATTCGTATGTG 58.839 41.667 0.00 0.00 31.72 3.21
2837 3588 5.386958 AGCATACCGTCATATTCGTATGT 57.613 39.130 0.00 0.00 31.72 2.29
2838 3589 6.145534 ACAAAGCATACCGTCATATTCGTATG 59.854 38.462 0.00 0.00 0.00 2.39
2839 3590 6.145534 CACAAAGCATACCGTCATATTCGTAT 59.854 38.462 0.00 0.00 0.00 3.06
2840 3591 5.460748 CACAAAGCATACCGTCATATTCGTA 59.539 40.000 0.00 0.00 0.00 3.43
2841 3592 4.270084 CACAAAGCATACCGTCATATTCGT 59.730 41.667 0.00 0.00 0.00 3.85
2842 3593 4.270084 ACACAAAGCATACCGTCATATTCG 59.730 41.667 0.00 0.00 0.00 3.34
2843 3594 5.734855 ACACAAAGCATACCGTCATATTC 57.265 39.130 0.00 0.00 0.00 1.75
2844 3595 6.821665 ACTTACACAAAGCATACCGTCATATT 59.178 34.615 0.00 0.00 38.93 1.28
2845 3596 6.346096 ACTTACACAAAGCATACCGTCATAT 58.654 36.000 0.00 0.00 38.93 1.78
2846 3597 5.726397 ACTTACACAAAGCATACCGTCATA 58.274 37.500 0.00 0.00 38.93 2.15
2847 3598 4.575885 ACTTACACAAAGCATACCGTCAT 58.424 39.130 0.00 0.00 38.93 3.06
2848 3599 3.997762 ACTTACACAAAGCATACCGTCA 58.002 40.909 0.00 0.00 38.93 4.35
2849 3600 4.708601 CAACTTACACAAAGCATACCGTC 58.291 43.478 0.00 0.00 38.93 4.79
2850 3601 3.058501 GCAACTTACACAAAGCATACCGT 60.059 43.478 0.00 0.00 38.93 4.83
2851 3602 3.058570 TGCAACTTACACAAAGCATACCG 60.059 43.478 0.00 0.00 38.93 4.02
2852 3603 4.497473 TGCAACTTACACAAAGCATACC 57.503 40.909 0.00 0.00 38.93 2.73
2853 3604 5.460646 ACATGCAACTTACACAAAGCATAC 58.539 37.500 0.00 0.00 40.38 2.39
2854 3605 5.240403 TGACATGCAACTTACACAAAGCATA 59.760 36.000 0.00 0.00 40.38 3.14
2855 3606 4.037803 TGACATGCAACTTACACAAAGCAT 59.962 37.500 0.00 0.00 42.82 3.79
2891 3642 8.397906 TCGAGGCTAACTTTGATCAAATATTTG 58.602 33.333 20.76 20.13 39.48 2.32
2892 3643 8.506168 TCGAGGCTAACTTTGATCAAATATTT 57.494 30.769 20.76 15.60 0.00 1.40
2893 3644 8.506168 TTCGAGGCTAACTTTGATCAAATATT 57.494 30.769 20.76 18.70 0.00 1.28
2894 3645 8.506168 TTTCGAGGCTAACTTTGATCAAATAT 57.494 30.769 20.76 14.55 0.00 1.28
2895 3646 7.915293 TTTCGAGGCTAACTTTGATCAAATA 57.085 32.000 20.76 10.73 0.00 1.40
2896 3647 6.817765 TTTCGAGGCTAACTTTGATCAAAT 57.182 33.333 20.76 10.14 0.00 2.32
2897 3648 6.627395 TTTTCGAGGCTAACTTTGATCAAA 57.373 33.333 19.45 19.45 0.00 2.69
2898 3649 6.435428 GTTTTTCGAGGCTAACTTTGATCAA 58.565 36.000 3.38 3.38 0.00 2.57
2899 3650 5.333798 CGTTTTTCGAGGCTAACTTTGATCA 60.334 40.000 0.00 0.00 42.86 2.92
2900 3651 5.080068 CGTTTTTCGAGGCTAACTTTGATC 58.920 41.667 0.00 0.00 42.86 2.92
2901 3652 4.612939 GCGTTTTTCGAGGCTAACTTTGAT 60.613 41.667 0.00 0.00 42.86 2.57
2902 3653 3.303526 GCGTTTTTCGAGGCTAACTTTGA 60.304 43.478 0.00 0.00 42.86 2.69
2903 3654 2.971261 GCGTTTTTCGAGGCTAACTTTG 59.029 45.455 0.00 0.00 42.86 2.77
2904 3655 2.614983 TGCGTTTTTCGAGGCTAACTTT 59.385 40.909 0.00 0.00 42.86 2.66
2905 3656 2.215196 TGCGTTTTTCGAGGCTAACTT 58.785 42.857 0.00 0.00 42.86 2.66
2906 3657 1.873698 TGCGTTTTTCGAGGCTAACT 58.126 45.000 0.00 0.00 42.86 2.24
2907 3658 2.894307 ATGCGTTTTTCGAGGCTAAC 57.106 45.000 0.00 0.00 42.86 2.34
2908 3659 3.372822 CCTAATGCGTTTTTCGAGGCTAA 59.627 43.478 0.00 0.00 42.86 3.09
2909 3660 2.933906 CCTAATGCGTTTTTCGAGGCTA 59.066 45.455 0.00 0.00 42.86 3.93
2910 3661 1.737793 CCTAATGCGTTTTTCGAGGCT 59.262 47.619 0.00 0.00 42.86 4.58
2911 3662 1.794076 GCCTAATGCGTTTTTCGAGGC 60.794 52.381 12.47 12.47 44.30 4.70
2912 3663 1.202143 GGCCTAATGCGTTTTTCGAGG 60.202 52.381 0.00 0.00 42.61 4.63
2913 3664 1.202143 GGGCCTAATGCGTTTTTCGAG 60.202 52.381 0.84 0.00 42.61 4.04
2914 3665 0.806241 GGGCCTAATGCGTTTTTCGA 59.194 50.000 0.84 0.00 42.61 3.71
2915 3666 0.808755 AGGGCCTAATGCGTTTTTCG 59.191 50.000 2.82 0.00 42.61 3.46
2916 3667 5.959618 ATATAGGGCCTAATGCGTTTTTC 57.040 39.130 18.91 0.00 42.61 2.29
2917 3668 6.775708 TCTATATAGGGCCTAATGCGTTTTT 58.224 36.000 18.91 0.00 42.61 1.94
2918 3669 6.368779 TCTATATAGGGCCTAATGCGTTTT 57.631 37.500 18.91 0.30 42.61 2.43
2919 3670 6.561519 ATCTATATAGGGCCTAATGCGTTT 57.438 37.500 18.91 1.12 42.61 3.60
2920 3671 7.067421 TCTATCTATATAGGGCCTAATGCGTT 58.933 38.462 18.91 1.94 36.27 4.84
2921 3672 6.611785 TCTATCTATATAGGGCCTAATGCGT 58.388 40.000 18.91 2.76 36.27 5.24
2922 3673 7.309499 CCTTCTATCTATATAGGGCCTAATGCG 60.309 44.444 18.91 7.12 36.27 4.73
2923 3674 7.730784 TCCTTCTATCTATATAGGGCCTAATGC 59.269 40.741 18.91 0.00 36.49 3.56
2924 3675 9.308000 CTCCTTCTATCTATATAGGGCCTAATG 57.692 40.741 18.91 8.11 36.49 1.90
2925 3676 8.461033 CCTCCTTCTATCTATATAGGGCCTAAT 58.539 40.741 18.91 14.19 36.49 1.73
2926 3677 7.146924 CCCTCCTTCTATCTATATAGGGCCTAA 60.147 44.444 18.91 7.61 36.30 2.69
2927 3678 6.335850 CCCTCCTTCTATCTATATAGGGCCTA 59.664 46.154 17.16 17.16 36.30 3.93
2928 3679 5.137082 CCCTCCTTCTATCTATATAGGGCCT 59.863 48.000 12.58 12.58 36.30 5.19
2929 3680 5.136392 TCCCTCCTTCTATCTATATAGGGCC 59.864 48.000 9.89 0.00 41.88 5.80
2930 3681 6.126008 ACTCCCTCCTTCTATCTATATAGGGC 60.126 46.154 9.89 0.00 41.88 5.19
2931 3682 7.474474 ACTCCCTCCTTCTATCTATATAGGG 57.526 44.000 9.89 0.00 43.23 3.53
2937 3688 9.851267 AAAATGATACTCCCTCCTTCTATCTAT 57.149 33.333 0.00 0.00 0.00 1.98
2938 3689 9.676129 AAAAATGATACTCCCTCCTTCTATCTA 57.324 33.333 0.00 0.00 0.00 1.98
2939 3690 8.574309 AAAAATGATACTCCCTCCTTCTATCT 57.426 34.615 0.00 0.00 0.00 1.98
2942 3693 8.211629 GCTTAAAAATGATACTCCCTCCTTCTA 58.788 37.037 0.00 0.00 0.00 2.10
2943 3694 7.057264 GCTTAAAAATGATACTCCCTCCTTCT 58.943 38.462 0.00 0.00 0.00 2.85
2944 3695 6.828785 TGCTTAAAAATGATACTCCCTCCTTC 59.171 38.462 0.00 0.00 0.00 3.46
2945 3696 6.731467 TGCTTAAAAATGATACTCCCTCCTT 58.269 36.000 0.00 0.00 0.00 3.36
2946 3697 6.327386 TGCTTAAAAATGATACTCCCTCCT 57.673 37.500 0.00 0.00 0.00 3.69
2947 3698 7.068716 ACATTGCTTAAAAATGATACTCCCTCC 59.931 37.037 14.44 0.00 38.21 4.30
2948 3699 8.000780 ACATTGCTTAAAAATGATACTCCCTC 57.999 34.615 14.44 0.00 38.21 4.30
2949 3700 7.615365 TGACATTGCTTAAAAATGATACTCCCT 59.385 33.333 14.44 0.00 38.21 4.20
2950 3701 7.771183 TGACATTGCTTAAAAATGATACTCCC 58.229 34.615 14.44 0.00 38.21 4.30
2951 3702 9.807649 AATGACATTGCTTAAAAATGATACTCC 57.192 29.630 14.44 2.00 38.21 3.85
2956 3707 9.715121 ACAAGAATGACATTGCTTAAAAATGAT 57.285 25.926 5.14 3.01 38.21 2.45
3197 3956 6.917477 CACAGAGTTCTTGCTATAGATCTGAC 59.083 42.308 5.18 0.00 35.93 3.51
3232 3993 6.518493 TGAAACTACTGACGAAACATAGGTT 58.482 36.000 0.00 0.00 39.43 3.50
3254 4015 3.206150 GGCAGACTGAAACTGAAACTGA 58.794 45.455 6.65 0.00 37.54 3.41
3269 4030 2.294512 CTCAAACAAAAGGAGGGCAGAC 59.705 50.000 0.00 0.00 0.00 3.51
3297 4058 8.220755 TCCCAAGTTTACATGTTATTATCAGC 57.779 34.615 2.30 0.00 0.00 4.26
3326 4089 3.560068 AGACAGGCGACACTAACAAAAAG 59.440 43.478 0.00 0.00 0.00 2.27
3382 4145 2.933769 CTTCAACGAAAGCAATGGTCC 58.066 47.619 0.00 0.00 0.00 4.46
3418 4181 6.216456 AGACATTCCTCCTTCCTTTAGAACAT 59.784 38.462 0.00 0.00 0.00 2.71
3479 4243 5.343860 TGAACAACGTATACAGTTCATGACG 59.656 40.000 21.83 0.00 43.66 4.35
3496 4260 5.587844 AGATGGACAGCAAGATATGAACAAC 59.412 40.000 0.00 0.00 0.00 3.32
3505 4270 2.502947 TGCACTAGATGGACAGCAAGAT 59.497 45.455 0.00 0.00 0.00 2.40
3572 4337 7.064016 GCCTTCAGTTTCAGACACTTATAGAAG 59.936 40.741 0.00 0.00 38.76 2.85
3602 4367 3.242739 GGCATAGCACCAACTGAATAACG 60.243 47.826 0.00 0.00 0.00 3.18
3622 4387 4.724074 TGAATCTGAAATGGTTCATGGC 57.276 40.909 0.00 0.00 42.85 4.40
3688 4453 9.533983 GCACAACATTCTTGATTGATATATACG 57.466 33.333 0.00 0.00 0.00 3.06
3720 4485 1.741706 AGCTGTCGATGCTGAAAATGG 59.258 47.619 13.79 0.00 39.56 3.16
3766 4531 2.031420 GTCGACCCAAAGGCTTTTACAC 60.031 50.000 10.36 2.19 36.11 2.90
3800 4565 6.094048 CCGAGTATGAGTGAAATTCCAAATGT 59.906 38.462 0.00 0.00 0.00 2.71
3840 4615 1.208259 GTTCGCAAGTTGGGCAAAAG 58.792 50.000 14.76 0.00 39.48 2.27
3856 4631 3.003275 TCAAAGTCCAGTCATTTGCGTTC 59.997 43.478 0.00 0.00 34.63 3.95
3870 4645 1.412343 TGCTGCCCTTTTTCAAAGTCC 59.588 47.619 0.00 0.00 0.00 3.85
3923 4698 3.970410 CAGCTGGGGGCAGACCAA 61.970 66.667 5.57 0.00 44.79 3.67
3939 4714 1.264045 TGATCTGACGGTCCCATGCA 61.264 55.000 5.55 0.00 0.00 3.96
3942 4717 0.826715 CTGTGATCTGACGGTCCCAT 59.173 55.000 5.55 0.00 0.00 4.00
3943 4718 1.888436 GCTGTGATCTGACGGTCCCA 61.888 60.000 5.55 0.00 0.00 4.37
3945 4720 0.179124 GAGCTGTGATCTGACGGTCC 60.179 60.000 5.55 0.00 0.00 4.46
3953 4741 3.052944 AGGTAGAAGAGGAGCTGTGATCT 60.053 47.826 0.00 0.00 0.00 2.75
3958 4746 3.767131 GAGAAAGGTAGAAGAGGAGCTGT 59.233 47.826 0.00 0.00 0.00 4.40
3978 4766 0.755686 AGGCGAGGATAAGGCAAGAG 59.244 55.000 0.00 0.00 35.18 2.85
3983 4771 1.369321 CTGGAGGCGAGGATAAGGC 59.631 63.158 0.00 0.00 0.00 4.35
4008 4796 0.464735 GACTGGCTCGCTCCTCTCTA 60.465 60.000 0.00 0.00 0.00 2.43
4035 4823 2.511373 GTGGTCGCGCATCCATGA 60.511 61.111 20.55 0.00 36.09 3.07
4097 4909 4.680237 CCAACTGGCGAGTGGCGA 62.680 66.667 0.71 0.00 44.92 5.54
4098 4910 4.680237 TCCAACTGGCGAGTGGCG 62.680 66.667 0.71 0.00 44.92 5.69
4099 4911 2.281484 TTCCAACTGGCGAGTGGC 60.281 61.111 0.71 0.00 42.51 5.01
4100 4912 1.227823 TGTTCCAACTGGCGAGTGG 60.228 57.895 0.71 6.58 34.44 4.00
4101 4913 0.532862 AGTGTTCCAACTGGCGAGTG 60.533 55.000 0.71 0.00 34.44 3.51
4102 4914 0.532862 CAGTGTTCCAACTGGCGAGT 60.533 55.000 0.00 0.00 43.22 4.18
4109 4921 4.579127 GGCACCAGTGTTCCAACT 57.421 55.556 0.00 0.00 0.00 3.16
4175 4988 3.401033 CCAGTGGGGTTTGATTTTTCC 57.599 47.619 0.00 0.00 0.00 3.13
4242 5055 1.568504 TTCCAGGAACGAGTATGGCT 58.431 50.000 0.00 0.00 32.63 4.75
4248 5061 1.004918 CGGCTTTCCAGGAACGAGT 60.005 57.895 9.92 0.00 0.00 4.18
4259 5072 1.202188 GCTTATGGAACTGCGGCTTTC 60.202 52.381 0.00 3.99 0.00 2.62
4327 5144 4.022935 TCAGATTTGCTACAAACAGGCAAG 60.023 41.667 0.00 0.00 44.83 4.01
4334 5151 3.667960 CGGCACTCAGATTTGCTACAAAC 60.668 47.826 4.54 0.00 38.85 2.93
4357 5174 1.467920 GGCAGCAGGAAAGCTACAAT 58.532 50.000 0.00 0.00 44.54 2.71
4422 5239 0.381089 CTGGAACCCGTAGTCTAGCG 59.619 60.000 0.00 0.00 0.00 4.26
4426 5243 0.039911 AGAGCTGGAACCCGTAGTCT 59.960 55.000 0.00 0.00 0.00 3.24
4433 5250 1.973812 GCCACAAGAGCTGGAACCC 60.974 63.158 0.00 0.00 0.00 4.11
4472 5289 1.123077 CATGGGGTGCTACAGCTAGA 58.877 55.000 2.44 0.00 42.66 2.43
4494 5311 2.690778 GGCAGATGACACAACCGCC 61.691 63.158 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.