Multiple sequence alignment - TraesCS3A01G150700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G150700 chr3A 100.000 3179 0 0 1 3179 137784745 137787923 0.000000e+00 5871.0
1 TraesCS3A01G150700 chr3A 90.670 761 65 3 1122 1882 738755381 738754627 0.000000e+00 1007.0
2 TraesCS3A01G150700 chr3A 94.495 109 6 0 636 744 738755784 738755676 5.450000e-38 169.0
3 TraesCS3A01G150700 chr3A 93.578 109 7 0 636 744 601661886 601661778 2.540000e-36 163.0
4 TraesCS3A01G150700 chr3A 98.246 57 1 0 904 960 137785592 137785648 2.020000e-17 100.0
5 TraesCS3A01G150700 chr3A 98.246 57 1 0 848 904 137785648 137785704 2.020000e-17 100.0
6 TraesCS3A01G150700 chr3D 93.675 996 41 12 2150 3136 127329029 127330011 0.000000e+00 1471.0
7 TraesCS3A01G150700 chr3D 91.275 596 37 10 19 611 15132931 15132348 0.000000e+00 798.0
8 TraesCS3A01G150700 chr3D 91.599 369 25 3 19 386 609616431 609616068 3.660000e-139 505.0
9 TraesCS3A01G150700 chr3D 90.625 224 17 1 1908 2127 127297307 127297530 8.620000e-76 294.0
10 TraesCS3A01G150700 chr3B 93.159 994 48 9 2150 3139 181470640 181471617 0.000000e+00 1441.0
11 TraesCS3A01G150700 chr3B 91.076 762 60 5 1122 1882 151116052 151115298 0.000000e+00 1024.0
12 TraesCS3A01G150700 chr3B 89.762 547 34 14 76 619 779681028 779681555 0.000000e+00 680.0
13 TraesCS3A01G150700 chr1D 89.893 841 68 11 1055 1882 492938716 492939552 0.000000e+00 1066.0
14 TraesCS3A01G150700 chr1D 93.578 109 7 0 636 744 492938388 492938496 2.540000e-36 163.0
15 TraesCS3A01G150700 chr1A 89.531 831 72 9 1064 1882 406151541 406152368 0.000000e+00 1038.0
16 TraesCS3A01G150700 chr1A 88.503 835 76 10 1064 1882 13802572 13801742 0.000000e+00 992.0
17 TraesCS3A01G150700 chr1A 91.606 548 32 10 64 608 206801974 206802510 0.000000e+00 745.0
18 TraesCS3A01G150700 chr2A 89.049 831 72 11 1064 1882 191975324 191976147 0.000000e+00 1013.0
19 TraesCS3A01G150700 chr2A 90.646 759 64 4 1122 1880 77761260 77760509 0.000000e+00 1002.0
20 TraesCS3A01G150700 chr2A 94.495 109 6 0 636 744 77761663 77761555 5.450000e-38 169.0
21 TraesCS3A01G150700 chr2A 94.495 109 6 0 636 744 752439133 752439241 5.450000e-38 169.0
22 TraesCS3A01G150700 chr2A 93.519 108 6 1 637 744 191974996 191975102 3.280000e-35 159.0
23 TraesCS3A01G150700 chr5B 90.327 765 66 5 1119 1882 108859154 108859911 0.000000e+00 996.0
24 TraesCS3A01G150700 chr7B 90.276 761 68 3 1122 1882 671264592 671263838 0.000000e+00 990.0
25 TraesCS3A01G150700 chr5D 90.682 601 42 9 19 616 352451871 352452460 0.000000e+00 787.0
26 TraesCS3A01G150700 chr5D 90.863 591 39 9 19 606 276932433 276933011 0.000000e+00 778.0
27 TraesCS3A01G150700 chr5D 91.525 59 5 0 765 823 408345817 408345875 7.310000e-12 82.4
28 TraesCS3A01G150700 chr7D 90.694 591 40 9 19 607 118341891 118342468 0.000000e+00 773.0
29 TraesCS3A01G150700 chr7D 90.525 591 42 11 19 607 335478682 335478104 0.000000e+00 769.0
30 TraesCS3A01G150700 chr4A 90.725 593 35 12 19 610 492535345 492534772 0.000000e+00 773.0
31 TraesCS3A01G150700 chr1B 90.268 596 36 13 19 612 305298848 305299423 0.000000e+00 760.0
32 TraesCS3A01G150700 chr6A 88.804 393 33 8 217 607 70198223 70198606 3.710000e-129 472.0
33 TraesCS3A01G150700 chr7A 94.495 109 6 0 636 744 217689578 217689470 5.450000e-38 169.0
34 TraesCS3A01G150700 chr6B 93.694 111 7 0 635 745 678821782 678821892 1.960000e-37 167.0
35 TraesCS3A01G150700 chr6B 93.636 110 7 0 636 745 678841014 678841123 7.050000e-37 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G150700 chr3A 137784745 137787923 3178 False 2023.666667 5871 98.830667 1 3179 3 chr3A.!!$F1 3178
1 TraesCS3A01G150700 chr3A 738754627 738755784 1157 True 588.000000 1007 92.582500 636 1882 2 chr3A.!!$R2 1246
2 TraesCS3A01G150700 chr3D 127329029 127330011 982 False 1471.000000 1471 93.675000 2150 3136 1 chr3D.!!$F2 986
3 TraesCS3A01G150700 chr3D 15132348 15132931 583 True 798.000000 798 91.275000 19 611 1 chr3D.!!$R1 592
4 TraesCS3A01G150700 chr3B 181470640 181471617 977 False 1441.000000 1441 93.159000 2150 3139 1 chr3B.!!$F1 989
5 TraesCS3A01G150700 chr3B 151115298 151116052 754 True 1024.000000 1024 91.076000 1122 1882 1 chr3B.!!$R1 760
6 TraesCS3A01G150700 chr3B 779681028 779681555 527 False 680.000000 680 89.762000 76 619 1 chr3B.!!$F2 543
7 TraesCS3A01G150700 chr1D 492938388 492939552 1164 False 614.500000 1066 91.735500 636 1882 2 chr1D.!!$F1 1246
8 TraesCS3A01G150700 chr1A 406151541 406152368 827 False 1038.000000 1038 89.531000 1064 1882 1 chr1A.!!$F2 818
9 TraesCS3A01G150700 chr1A 13801742 13802572 830 True 992.000000 992 88.503000 1064 1882 1 chr1A.!!$R1 818
10 TraesCS3A01G150700 chr1A 206801974 206802510 536 False 745.000000 745 91.606000 64 608 1 chr1A.!!$F1 544
11 TraesCS3A01G150700 chr2A 191974996 191976147 1151 False 586.000000 1013 91.284000 637 1882 2 chr2A.!!$F2 1245
12 TraesCS3A01G150700 chr2A 77760509 77761663 1154 True 585.500000 1002 92.570500 636 1880 2 chr2A.!!$R1 1244
13 TraesCS3A01G150700 chr5B 108859154 108859911 757 False 996.000000 996 90.327000 1119 1882 1 chr5B.!!$F1 763
14 TraesCS3A01G150700 chr7B 671263838 671264592 754 True 990.000000 990 90.276000 1122 1882 1 chr7B.!!$R1 760
15 TraesCS3A01G150700 chr5D 352451871 352452460 589 False 787.000000 787 90.682000 19 616 1 chr5D.!!$F2 597
16 TraesCS3A01G150700 chr5D 276932433 276933011 578 False 778.000000 778 90.863000 19 606 1 chr5D.!!$F1 587
17 TraesCS3A01G150700 chr7D 118341891 118342468 577 False 773.000000 773 90.694000 19 607 1 chr7D.!!$F1 588
18 TraesCS3A01G150700 chr7D 335478104 335478682 578 True 769.000000 769 90.525000 19 607 1 chr7D.!!$R1 588
19 TraesCS3A01G150700 chr4A 492534772 492535345 573 True 773.000000 773 90.725000 19 610 1 chr4A.!!$R1 591
20 TraesCS3A01G150700 chr1B 305298848 305299423 575 False 760.000000 760 90.268000 19 612 1 chr1B.!!$F1 593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
986 999 0.242825 CTCGGCCAACACTCTCGTTA 59.757 55.0 2.24 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2849 2960 0.027194 TCGTCGTTCGATCCGTCATC 59.973 55.0 0.0 0.0 44.01 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.831685 TACGCTCAACAGTGTCCATT 57.168 45.000 0.00 0.00 42.66 3.16
59 60 0.946528 CCACCGTCGTCGTCCATATA 59.053 55.000 0.71 0.00 35.01 0.86
73 74 4.519350 CGTCCATATACTCCAGCTTCTACA 59.481 45.833 0.00 0.00 0.00 2.74
85 86 1.716186 CTTCTACATCGTCGTCGTCG 58.284 55.000 5.50 5.50 38.33 5.12
126 127 1.228124 TGCTTTGCTGTTACCGGCT 60.228 52.632 0.00 0.00 43.76 5.52
186 187 2.159338 CGGCTTGTGAATCAATCAAGGG 60.159 50.000 13.26 0.00 40.50 3.95
193 194 5.083122 TGTGAATCAATCAAGGGGCTTTAA 58.917 37.500 0.00 0.00 40.50 1.52
418 428 1.310933 CCAAGAGCAAGCCGAAGCAT 61.311 55.000 0.00 0.00 43.56 3.79
440 450 2.409378 CGCACCTTCATGAATTGTTTGC 59.591 45.455 8.96 11.62 0.00 3.68
486 497 9.686683 TTTTTCTAATTTTCCCATCCAAACAAA 57.313 25.926 0.00 0.00 0.00 2.83
507 518 7.618137 ACAAAGTACTGGGTATACTTACCTTG 58.382 38.462 0.00 8.04 46.22 3.61
513 524 5.657302 ACTGGGTATACTTACCTTGACAGAG 59.343 44.000 2.25 0.00 46.22 3.35
525 536 5.608449 ACCTTGACAGAGTAACTAACCAAC 58.392 41.667 0.00 0.00 0.00 3.77
526 537 4.995487 CCTTGACAGAGTAACTAACCAACC 59.005 45.833 0.00 0.00 0.00 3.77
527 538 5.454187 CCTTGACAGAGTAACTAACCAACCA 60.454 44.000 0.00 0.00 0.00 3.67
528 539 5.617528 TGACAGAGTAACTAACCAACCAA 57.382 39.130 0.00 0.00 0.00 3.67
529 540 5.991861 TGACAGAGTAACTAACCAACCAAA 58.008 37.500 0.00 0.00 0.00 3.28
531 542 6.316890 TGACAGAGTAACTAACCAACCAAAAC 59.683 38.462 0.00 0.00 0.00 2.43
532 543 6.420638 ACAGAGTAACTAACCAACCAAAACT 58.579 36.000 0.00 0.00 0.00 2.66
533 544 6.317893 ACAGAGTAACTAACCAACCAAAACTG 59.682 38.462 0.00 0.00 0.00 3.16
534 545 5.826208 AGAGTAACTAACCAACCAAAACTGG 59.174 40.000 0.00 0.00 38.77 4.00
611 624 6.001460 CCAGTATCCAAACAACCACTTAAGA 58.999 40.000 10.09 0.00 0.00 2.10
615 628 8.630037 AGTATCCAAACAACCACTTAAGAAAAG 58.370 33.333 10.09 0.00 0.00 2.27
616 629 7.654022 ATCCAAACAACCACTTAAGAAAAGA 57.346 32.000 10.09 0.00 0.00 2.52
617 630 7.469537 TCCAAACAACCACTTAAGAAAAGAA 57.530 32.000 10.09 0.00 0.00 2.52
618 631 7.543756 TCCAAACAACCACTTAAGAAAAGAAG 58.456 34.615 10.09 0.00 0.00 2.85
619 632 6.756542 CCAAACAACCACTTAAGAAAAGAAGG 59.243 38.462 10.09 2.07 0.00 3.46
620 633 6.465439 AACAACCACTTAAGAAAAGAAGGG 57.535 37.500 10.09 0.38 0.00 3.95
621 634 5.762279 ACAACCACTTAAGAAAAGAAGGGA 58.238 37.500 10.09 0.00 0.00 4.20
622 635 6.192044 ACAACCACTTAAGAAAAGAAGGGAA 58.808 36.000 10.09 0.00 0.00 3.97
623 636 6.321435 ACAACCACTTAAGAAAAGAAGGGAAG 59.679 38.462 10.09 0.00 0.00 3.46
624 637 5.386060 ACCACTTAAGAAAAGAAGGGAAGG 58.614 41.667 10.09 0.00 0.00 3.46
625 638 5.103643 ACCACTTAAGAAAAGAAGGGAAGGT 60.104 40.000 10.09 0.00 0.00 3.50
626 639 5.473846 CCACTTAAGAAAAGAAGGGAAGGTC 59.526 44.000 10.09 0.00 0.00 3.85
627 640 6.299922 CACTTAAGAAAAGAAGGGAAGGTCT 58.700 40.000 10.09 0.00 0.00 3.85
628 641 6.428465 CACTTAAGAAAAGAAGGGAAGGTCTC 59.572 42.308 10.09 0.00 0.00 3.36
629 642 3.686916 AGAAAAGAAGGGAAGGTCTCG 57.313 47.619 0.00 0.00 0.00 4.04
630 643 2.973406 AGAAAAGAAGGGAAGGTCTCGT 59.027 45.455 0.00 0.00 0.00 4.18
631 644 2.841442 AAAGAAGGGAAGGTCTCGTG 57.159 50.000 0.00 0.00 0.00 4.35
632 645 1.718280 AAGAAGGGAAGGTCTCGTGT 58.282 50.000 0.00 0.00 0.00 4.49
633 646 1.718280 AGAAGGGAAGGTCTCGTGTT 58.282 50.000 0.00 0.00 0.00 3.32
634 647 2.047830 AGAAGGGAAGGTCTCGTGTTT 58.952 47.619 0.00 0.00 0.00 2.83
645 658 3.139077 GTCTCGTGTTTGTTTCCCTCAT 58.861 45.455 0.00 0.00 0.00 2.90
696 709 2.019984 GCAGGAATCCATCACCAAGTC 58.980 52.381 0.61 0.00 0.00 3.01
716 729 2.014857 CGGATCAGTAGTTCCGTCTCA 58.985 52.381 3.28 0.00 46.87 3.27
732 745 3.370978 CGTCTCAAATCGGTTATGTTGCT 59.629 43.478 0.00 0.00 0.00 3.91
752 765 4.360951 CTAGTCCTAGCTAGCTGGTAGT 57.639 50.000 27.68 16.42 43.23 2.73
753 766 3.217681 AGTCCTAGCTAGCTGGTAGTC 57.782 52.381 27.68 12.95 43.23 2.59
754 767 2.158579 AGTCCTAGCTAGCTGGTAGTCC 60.159 54.545 27.68 8.90 43.23 3.85
755 768 1.145325 TCCTAGCTAGCTGGTAGTCCC 59.855 57.143 27.68 0.00 43.23 4.46
756 769 1.146152 CCTAGCTAGCTGGTAGTCCCT 59.854 57.143 27.68 6.72 43.23 4.20
757 770 2.425102 CCTAGCTAGCTGGTAGTCCCTT 60.425 54.545 27.68 0.00 43.23 3.95
758 771 2.255770 AGCTAGCTGGTAGTCCCTTT 57.744 50.000 18.57 0.00 0.00 3.11
759 772 1.834263 AGCTAGCTGGTAGTCCCTTTG 59.166 52.381 18.57 0.00 0.00 2.77
760 773 1.555533 GCTAGCTGGTAGTCCCTTTGT 59.444 52.381 7.70 0.00 0.00 2.83
761 774 2.418884 GCTAGCTGGTAGTCCCTTTGTC 60.419 54.545 7.70 0.00 0.00 3.18
762 775 2.031495 AGCTGGTAGTCCCTTTGTCT 57.969 50.000 0.00 0.00 0.00 3.41
763 776 2.339769 AGCTGGTAGTCCCTTTGTCTT 58.660 47.619 0.00 0.00 0.00 3.01
764 777 3.517612 AGCTGGTAGTCCCTTTGTCTTA 58.482 45.455 0.00 0.00 0.00 2.10
765 778 4.104831 AGCTGGTAGTCCCTTTGTCTTAT 58.895 43.478 0.00 0.00 0.00 1.73
766 779 5.278061 AGCTGGTAGTCCCTTTGTCTTATA 58.722 41.667 0.00 0.00 0.00 0.98
767 780 5.724854 AGCTGGTAGTCCCTTTGTCTTATAA 59.275 40.000 0.00 0.00 0.00 0.98
768 781 6.387220 AGCTGGTAGTCCCTTTGTCTTATAAT 59.613 38.462 0.00 0.00 0.00 1.28
769 782 7.567622 AGCTGGTAGTCCCTTTGTCTTATAATA 59.432 37.037 0.00 0.00 0.00 0.98
770 783 8.376270 GCTGGTAGTCCCTTTGTCTTATAATAT 58.624 37.037 0.00 0.00 0.00 1.28
854 867 1.304282 CAGGTATTGCCCTGCACCT 59.696 57.895 0.00 0.00 45.19 4.00
872 885 4.161754 GCACCTCTATAAACAGTACACCCT 59.838 45.833 0.00 0.00 0.00 4.34
873 886 5.661458 CACCTCTATAAACAGTACACCCTG 58.339 45.833 0.00 0.00 38.45 4.45
874 887 5.421056 CACCTCTATAAACAGTACACCCTGA 59.579 44.000 0.00 0.00 36.30 3.86
875 888 5.657302 ACCTCTATAAACAGTACACCCTGAG 59.343 44.000 0.00 0.00 36.30 3.35
876 889 5.892119 CCTCTATAAACAGTACACCCTGAGA 59.108 44.000 0.00 0.00 36.30 3.27
877 890 6.551601 CCTCTATAAACAGTACACCCTGAGAT 59.448 42.308 0.00 0.00 36.30 2.75
878 891 7.255660 CCTCTATAAACAGTACACCCTGAGATC 60.256 44.444 0.00 0.00 36.30 2.75
879 892 7.123383 TCTATAAACAGTACACCCTGAGATCA 58.877 38.462 0.00 0.00 36.30 2.92
880 893 4.543590 AAACAGTACACCCTGAGATCAG 57.456 45.455 2.72 2.72 43.40 2.90
881 894 3.176924 ACAGTACACCCTGAGATCAGT 57.823 47.619 8.93 0.00 42.27 3.41
882 895 4.317530 ACAGTACACCCTGAGATCAGTA 57.682 45.455 8.93 0.00 42.27 2.74
883 896 4.274147 ACAGTACACCCTGAGATCAGTAG 58.726 47.826 8.93 2.88 42.27 2.57
884 897 4.018324 ACAGTACACCCTGAGATCAGTAGA 60.018 45.833 8.93 0.00 42.27 2.59
885 898 4.950475 CAGTACACCCTGAGATCAGTAGAA 59.050 45.833 8.93 0.00 42.27 2.10
886 899 5.419155 CAGTACACCCTGAGATCAGTAGAAA 59.581 44.000 8.93 0.00 42.27 2.52
887 900 5.654650 AGTACACCCTGAGATCAGTAGAAAG 59.345 44.000 8.93 0.00 42.27 2.62
888 901 4.678256 ACACCCTGAGATCAGTAGAAAGA 58.322 43.478 8.93 0.00 42.27 2.52
889 902 5.276440 ACACCCTGAGATCAGTAGAAAGAT 58.724 41.667 8.93 0.00 42.27 2.40
890 903 5.362430 ACACCCTGAGATCAGTAGAAAGATC 59.638 44.000 8.93 0.00 42.27 2.75
891 904 5.362143 CACCCTGAGATCAGTAGAAAGATCA 59.638 44.000 8.93 0.00 42.36 2.92
892 905 5.598005 ACCCTGAGATCAGTAGAAAGATCAG 59.402 44.000 8.93 0.00 42.36 2.90
893 906 5.598005 CCCTGAGATCAGTAGAAAGATCAGT 59.402 44.000 8.93 0.00 42.36 3.41
894 907 6.461370 CCCTGAGATCAGTAGAAAGATCAGTG 60.461 46.154 8.93 0.00 42.36 3.66
895 908 6.461370 CCTGAGATCAGTAGAAAGATCAGTGG 60.461 46.154 8.93 0.00 42.36 4.00
896 909 5.362143 TGAGATCAGTAGAAAGATCAGTGGG 59.638 44.000 0.00 0.00 42.36 4.61
897 910 5.523588 AGATCAGTAGAAAGATCAGTGGGA 58.476 41.667 0.00 0.00 42.36 4.37
898 911 5.362430 AGATCAGTAGAAAGATCAGTGGGAC 59.638 44.000 0.00 0.00 42.36 4.46
899 912 4.416516 TCAGTAGAAAGATCAGTGGGACA 58.583 43.478 0.00 0.00 0.00 4.02
900 913 6.902824 GATCAGTAGAAAGATCAGTGGGACAC 60.903 46.154 0.00 0.00 45.15 3.67
901 914 9.952124 GATCAGTAGAAAGATCAGTGGGACACG 62.952 48.148 0.00 0.00 46.40 4.49
912 925 4.008933 GGACACGGCTGCACCTCT 62.009 66.667 0.50 0.00 35.61 3.69
913 926 2.646175 GGACACGGCTGCACCTCTA 61.646 63.158 0.50 0.00 35.61 2.43
914 927 1.517832 GACACGGCTGCACCTCTAT 59.482 57.895 0.50 0.00 35.61 1.98
915 928 0.744874 GACACGGCTGCACCTCTATA 59.255 55.000 0.50 0.00 35.61 1.31
916 929 1.136305 GACACGGCTGCACCTCTATAA 59.864 52.381 0.50 0.00 35.61 0.98
917 930 1.553248 ACACGGCTGCACCTCTATAAA 59.447 47.619 0.50 0.00 35.61 1.40
918 931 1.933853 CACGGCTGCACCTCTATAAAC 59.066 52.381 0.50 0.00 35.61 2.01
919 932 1.553248 ACGGCTGCACCTCTATAAACA 59.447 47.619 0.50 0.00 35.61 2.83
920 933 2.205074 CGGCTGCACCTCTATAAACAG 58.795 52.381 0.50 0.00 35.61 3.16
921 934 2.418746 CGGCTGCACCTCTATAAACAGT 60.419 50.000 0.50 0.00 35.61 3.55
922 935 3.181479 CGGCTGCACCTCTATAAACAGTA 60.181 47.826 0.50 0.00 35.61 2.74
923 936 4.120589 GGCTGCACCTCTATAAACAGTAC 58.879 47.826 0.50 0.00 34.51 2.73
924 937 4.382685 GGCTGCACCTCTATAAACAGTACA 60.383 45.833 0.50 0.00 34.51 2.90
925 938 4.567159 GCTGCACCTCTATAAACAGTACAC 59.433 45.833 0.00 0.00 0.00 2.90
926 939 5.080969 TGCACCTCTATAAACAGTACACC 57.919 43.478 0.00 0.00 0.00 4.16
927 940 4.081309 TGCACCTCTATAAACAGTACACCC 60.081 45.833 0.00 0.00 0.00 4.61
928 941 4.161754 GCACCTCTATAAACAGTACACCCT 59.838 45.833 0.00 0.00 0.00 4.34
933 946 6.551601 CCTCTATAAACAGTACACCCTGAGAT 59.448 42.308 0.00 0.00 36.30 2.75
936 949 4.543590 AAACAGTACACCCTGAGATCAG 57.456 45.455 2.72 2.72 43.40 2.90
953 966 2.735151 TCAGTAGAAAGATCAGCGGGA 58.265 47.619 0.00 0.00 0.00 5.14
954 967 2.427453 TCAGTAGAAAGATCAGCGGGAC 59.573 50.000 0.00 0.00 0.00 4.46
955 968 2.166459 CAGTAGAAAGATCAGCGGGACA 59.834 50.000 0.00 0.00 0.00 4.02
956 969 2.166664 AGTAGAAAGATCAGCGGGACAC 59.833 50.000 0.00 0.00 0.00 3.67
959 972 3.665675 AAGATCAGCGGGACACGGC 62.666 63.158 0.00 0.00 44.51 5.68
969 982 2.126424 GACACGGCGTCAGGACTC 60.126 66.667 10.85 0.00 44.69 3.36
970 983 3.948086 GACACGGCGTCAGGACTCG 62.948 68.421 10.85 0.00 44.69 4.18
975 988 4.373116 GCGTCAGGACTCGGCCAA 62.373 66.667 2.24 0.00 0.00 4.52
976 989 2.432628 CGTCAGGACTCGGCCAAC 60.433 66.667 2.24 0.00 0.00 3.77
977 990 2.741092 GTCAGGACTCGGCCAACA 59.259 61.111 2.24 0.00 0.00 3.33
978 991 1.668151 GTCAGGACTCGGCCAACAC 60.668 63.158 2.24 0.00 0.00 3.32
979 992 1.837051 TCAGGACTCGGCCAACACT 60.837 57.895 2.24 0.00 0.00 3.55
980 993 1.374758 CAGGACTCGGCCAACACTC 60.375 63.158 2.24 0.00 0.00 3.51
981 994 1.534235 AGGACTCGGCCAACACTCT 60.534 57.895 2.24 0.00 0.00 3.24
982 995 1.079750 GGACTCGGCCAACACTCTC 60.080 63.158 2.24 0.00 0.00 3.20
983 996 1.444553 GACTCGGCCAACACTCTCG 60.445 63.158 2.24 0.00 0.00 4.04
984 997 2.143594 GACTCGGCCAACACTCTCGT 62.144 60.000 2.24 0.00 0.00 4.18
985 998 1.006102 CTCGGCCAACACTCTCGTT 60.006 57.895 2.24 0.00 0.00 3.85
986 999 0.242825 CTCGGCCAACACTCTCGTTA 59.757 55.000 2.24 0.00 0.00 3.18
987 1000 0.675083 TCGGCCAACACTCTCGTTAA 59.325 50.000 2.24 0.00 0.00 2.01
988 1001 1.068895 TCGGCCAACACTCTCGTTAAA 59.931 47.619 2.24 0.00 0.00 1.52
989 1002 1.459592 CGGCCAACACTCTCGTTAAAG 59.540 52.381 2.24 0.00 0.00 1.85
990 1003 1.197036 GGCCAACACTCTCGTTAAAGC 59.803 52.381 0.00 0.00 0.00 3.51
991 1004 1.197036 GCCAACACTCTCGTTAAAGCC 59.803 52.381 0.00 0.00 0.00 4.35
992 1005 1.804748 CCAACACTCTCGTTAAAGCCC 59.195 52.381 0.00 0.00 0.00 5.19
993 1006 1.804748 CAACACTCTCGTTAAAGCCCC 59.195 52.381 0.00 0.00 0.00 5.80
994 1007 0.323957 ACACTCTCGTTAAAGCCCCC 59.676 55.000 0.00 0.00 0.00 5.40
995 1008 0.739813 CACTCTCGTTAAAGCCCCCG 60.740 60.000 0.00 0.00 0.00 5.73
996 1009 1.814169 CTCTCGTTAAAGCCCCCGC 60.814 63.158 0.00 0.00 0.00 6.13
1007 1020 4.785453 CCCCCGCTCCACTGCTTC 62.785 72.222 0.00 0.00 0.00 3.86
1008 1021 3.710722 CCCCGCTCCACTGCTTCT 61.711 66.667 0.00 0.00 0.00 2.85
1009 1022 2.348998 CCCGCTCCACTGCTTCTT 59.651 61.111 0.00 0.00 0.00 2.52
1010 1023 2.037136 CCCGCTCCACTGCTTCTTG 61.037 63.158 0.00 0.00 0.00 3.02
1012 1025 2.684843 CGCTCCACTGCTTCTTGGC 61.685 63.158 0.00 0.00 32.37 4.52
1016 1029 0.694771 TCCACTGCTTCTTGGCATCT 59.305 50.000 0.00 0.00 41.63 2.90
1018 1031 1.612462 CCACTGCTTCTTGGCATCTGA 60.612 52.381 0.00 0.00 41.63 3.27
1019 1032 2.156917 CACTGCTTCTTGGCATCTGAA 58.843 47.619 0.00 0.00 41.63 3.02
1023 1036 3.159472 TGCTTCTTGGCATCTGAATTGT 58.841 40.909 0.00 0.00 37.29 2.71
1025 1038 4.766373 TGCTTCTTGGCATCTGAATTGTTA 59.234 37.500 0.00 0.00 37.29 2.41
1026 1039 5.243507 TGCTTCTTGGCATCTGAATTGTTAA 59.756 36.000 0.00 0.00 37.29 2.01
1027 1040 5.803967 GCTTCTTGGCATCTGAATTGTTAAG 59.196 40.000 0.00 0.00 0.00 1.85
1029 1042 7.630082 GCTTCTTGGCATCTGAATTGTTAAGAT 60.630 37.037 0.00 0.00 0.00 2.40
1032 1045 9.412460 TCTTGGCATCTGAATTGTTAAGATTAT 57.588 29.630 0.00 0.00 0.00 1.28
1060 1136 6.542821 TCAACCTGTTCTTCTGGTAATTCAT 58.457 36.000 0.00 0.00 45.51 2.57
1061 1145 6.430925 TCAACCTGTTCTTCTGGTAATTCATG 59.569 38.462 0.00 0.00 45.51 3.07
1062 1146 5.256474 ACCTGTTCTTCTGGTAATTCATGG 58.744 41.667 0.00 0.00 44.65 3.66
1074 1158 5.221823 TGGTAATTCATGGTTCAGTCAGTCA 60.222 40.000 0.00 0.00 0.00 3.41
1077 1161 2.608623 TCATGGTTCAGTCAGTCAGGA 58.391 47.619 0.00 0.00 0.00 3.86
1104 1188 1.893137 TGTCTAAGCGAAGAAGGCAGA 59.107 47.619 0.00 0.00 0.00 4.26
1112 1196 0.463620 GAAGAAGGCAGAGCGAGGAT 59.536 55.000 0.00 0.00 0.00 3.24
1113 1197 0.463620 AAGAAGGCAGAGCGAGGATC 59.536 55.000 0.00 0.00 0.00 3.36
1115 1199 0.249405 GAAGGCAGAGCGAGGATCAG 60.249 60.000 0.00 0.00 33.17 2.90
1116 1200 2.280052 GGCAGAGCGAGGATCAGC 60.280 66.667 0.00 0.00 35.44 4.26
1117 1201 2.280052 GCAGAGCGAGGATCAGCC 60.280 66.667 0.00 0.00 35.73 4.85
1120 1219 4.292178 GAGCGAGGATCAGCCCGG 62.292 72.222 0.00 0.00 35.73 5.73
1169 1268 4.076394 GCCTCTATCTGGTTCTAGACGAT 58.924 47.826 0.00 0.00 0.00 3.73
1245 1350 3.155167 CCCCTGTCCTCCGGCTAC 61.155 72.222 0.00 0.00 0.00 3.58
1252 1357 0.966370 GTCCTCCGGCTACTGTCACT 60.966 60.000 0.00 0.00 0.00 3.41
1259 1364 1.355066 GGCTACTGTCACTTGAGCGC 61.355 60.000 0.00 0.00 33.85 5.92
1325 1430 2.435938 AGCAACATACACGCCGGG 60.436 61.111 2.18 0.00 0.00 5.73
1343 1448 0.450983 GGACCCTCTTCTACGACACG 59.549 60.000 0.00 0.00 0.00 4.49
1391 1496 3.112709 GTTCCAGACGCACCGCTC 61.113 66.667 0.00 0.00 0.00 5.03
1392 1497 4.717629 TTCCAGACGCACCGCTCG 62.718 66.667 0.00 0.00 0.00 5.03
1454 1559 2.047655 TTCGCGTTCGCCTTCCAT 60.048 55.556 5.77 0.00 35.26 3.41
1455 1560 2.098233 TTCGCGTTCGCCTTCCATC 61.098 57.895 5.77 0.00 35.26 3.51
1488 1593 1.248101 TGTGTCCTTCGAGGCGATGA 61.248 55.000 0.00 0.00 35.23 2.92
1492 1597 1.298713 CCTTCGAGGCGATGACGAG 60.299 63.158 0.00 0.00 42.66 4.18
1501 1606 4.286320 GATGACGAGGCCGCCGAT 62.286 66.667 23.79 10.26 39.95 4.18
1591 1699 3.810941 GACGAGATGATCTTCTCCTACGT 59.189 47.826 25.14 21.22 39.19 3.57
1674 1782 3.680786 CCGTCGACACCAGGAGCA 61.681 66.667 17.16 0.00 0.00 4.26
1679 1787 1.597854 CGACACCAGGAGCAGCAAA 60.598 57.895 0.00 0.00 0.00 3.68
1688 1796 2.753043 AGCAGCAAATGGAGGCGG 60.753 61.111 0.00 0.00 34.54 6.13
1691 1799 2.753043 AGCAAATGGAGGCGGCAG 60.753 61.111 13.08 0.00 34.54 4.85
1742 1850 1.583967 CTACTTCGACGCCGAGCTG 60.584 63.158 0.00 0.00 46.39 4.24
1776 1884 2.986979 TGCACGAGGACGGCTACA 60.987 61.111 0.00 0.00 44.46 2.74
1793 1901 1.153208 CATCTGCTCCTGCCAGGTC 60.153 63.158 11.27 4.76 36.53 3.85
1853 1961 1.880340 GAAGATGGCCGACGAGCAG 60.880 63.158 0.00 0.00 0.00 4.24
1877 1985 1.077787 GTGGATCCCGTGCCATCAA 60.078 57.895 9.90 0.00 36.41 2.57
1889 1997 2.183409 CCATCAACTGGCGAAAGGG 58.817 57.895 0.00 0.00 38.47 3.95
1890 1998 1.315257 CCATCAACTGGCGAAAGGGG 61.315 60.000 0.00 0.00 38.47 4.79
1891 1999 0.322456 CATCAACTGGCGAAAGGGGA 60.322 55.000 0.00 0.00 0.00 4.81
1892 2000 0.035056 ATCAACTGGCGAAAGGGGAG 60.035 55.000 0.00 0.00 0.00 4.30
1893 2001 1.675641 CAACTGGCGAAAGGGGAGG 60.676 63.158 0.00 0.00 0.00 4.30
1894 2002 2.907179 AACTGGCGAAAGGGGAGGG 61.907 63.158 0.00 0.00 0.00 4.30
1895 2003 3.009115 CTGGCGAAAGGGGAGGGA 61.009 66.667 0.00 0.00 0.00 4.20
1896 2004 3.009115 TGGCGAAAGGGGAGGGAG 61.009 66.667 0.00 0.00 0.00 4.30
1897 2005 4.491409 GGCGAAAGGGGAGGGAGC 62.491 72.222 0.00 0.00 0.00 4.70
1898 2006 3.403558 GCGAAAGGGGAGGGAGCT 61.404 66.667 0.00 0.00 0.00 4.09
1899 2007 2.064581 GCGAAAGGGGAGGGAGCTA 61.065 63.158 0.00 0.00 0.00 3.32
1900 2008 1.823976 CGAAAGGGGAGGGAGCTAC 59.176 63.158 0.00 0.00 0.00 3.58
1901 2009 0.688087 CGAAAGGGGAGGGAGCTACT 60.688 60.000 0.00 0.00 0.00 2.57
1902 2010 1.124780 GAAAGGGGAGGGAGCTACTC 58.875 60.000 8.95 8.95 0.00 2.59
1903 2011 0.719623 AAAGGGGAGGGAGCTACTCT 59.280 55.000 15.25 2.58 35.34 3.24
1904 2012 0.263468 AAGGGGAGGGAGCTACTCTC 59.737 60.000 15.25 12.25 44.82 3.20
1911 2019 1.747709 GGGAGCTACTCTCACGTACA 58.252 55.000 0.00 0.00 43.70 2.90
1912 2020 2.299521 GGGAGCTACTCTCACGTACAT 58.700 52.381 0.00 0.00 43.70 2.29
1913 2021 2.033550 GGGAGCTACTCTCACGTACATG 59.966 54.545 0.00 0.00 43.70 3.21
1914 2022 2.033550 GGAGCTACTCTCACGTACATGG 59.966 54.545 0.00 0.00 43.70 3.66
1915 2023 2.025155 AGCTACTCTCACGTACATGGG 58.975 52.381 0.00 0.00 0.00 4.00
1916 2024 1.536284 GCTACTCTCACGTACATGGGC 60.536 57.143 0.00 0.00 0.00 5.36
1917 2025 1.749063 CTACTCTCACGTACATGGGCA 59.251 52.381 0.00 0.00 0.00 5.36
1918 2026 0.973632 ACTCTCACGTACATGGGCAA 59.026 50.000 0.00 0.00 0.00 4.52
1919 2027 1.555075 ACTCTCACGTACATGGGCAAT 59.445 47.619 0.00 0.00 0.00 3.56
1920 2028 1.935873 CTCTCACGTACATGGGCAATG 59.064 52.381 0.00 0.00 42.48 2.82
1921 2029 0.378257 CTCACGTACATGGGCAATGC 59.622 55.000 0.56 0.00 40.22 3.56
1932 2040 3.970721 GCAATGCCAGGTTTTGCC 58.029 55.556 14.46 1.59 39.80 4.52
1942 2050 3.792716 GGTTTTGCCTGGTCGATTG 57.207 52.632 0.00 0.00 0.00 2.67
1943 2051 0.388520 GGTTTTGCCTGGTCGATTGC 60.389 55.000 0.00 0.00 0.00 3.56
1944 2052 0.729140 GTTTTGCCTGGTCGATTGCG 60.729 55.000 0.00 0.00 39.35 4.85
1945 2053 1.169661 TTTTGCCTGGTCGATTGCGT 61.170 50.000 0.00 0.00 38.98 5.24
1946 2054 1.851021 TTTGCCTGGTCGATTGCGTG 61.851 55.000 0.00 0.00 38.98 5.34
1947 2055 3.499737 GCCTGGTCGATTGCGTGG 61.500 66.667 0.00 0.00 38.98 4.94
1948 2056 3.499737 CCTGGTCGATTGCGTGGC 61.500 66.667 0.00 0.00 38.98 5.01
1949 2057 2.741985 CTGGTCGATTGCGTGGCA 60.742 61.111 0.00 0.00 38.98 4.92
1950 2058 2.741985 TGGTCGATTGCGTGGCAG 60.742 61.111 0.00 0.00 40.61 4.85
1951 2059 3.499737 GGTCGATTGCGTGGCAGG 61.500 66.667 2.14 2.14 40.61 4.85
1952 2060 4.166011 GTCGATTGCGTGGCAGGC 62.166 66.667 24.22 24.22 40.61 4.85
1955 2063 3.204827 GATTGCGTGGCAGGCGAT 61.205 61.111 29.50 29.50 40.61 4.58
1956 2064 3.459378 GATTGCGTGGCAGGCGATG 62.459 63.158 32.95 0.00 40.61 3.84
1960 2068 4.457496 CGTGGCAGGCGATGGAGT 62.457 66.667 0.00 0.00 0.00 3.85
1961 2069 2.512515 GTGGCAGGCGATGGAGTC 60.513 66.667 0.00 0.00 0.00 3.36
1973 2081 3.810310 GATGGAGTCGAGTTTCAGGAT 57.190 47.619 0.00 0.00 0.00 3.24
1974 2082 3.452474 GATGGAGTCGAGTTTCAGGATG 58.548 50.000 0.00 0.00 37.54 3.51
1975 2083 1.066858 TGGAGTCGAGTTTCAGGATGC 60.067 52.381 0.00 0.00 34.76 3.91
1976 2084 1.272781 GAGTCGAGTTTCAGGATGCG 58.727 55.000 0.00 0.00 34.76 4.73
1977 2085 0.603569 AGTCGAGTTTCAGGATGCGT 59.396 50.000 0.00 0.00 34.76 5.24
1978 2086 1.000955 AGTCGAGTTTCAGGATGCGTT 59.999 47.619 0.00 0.00 34.76 4.84
1979 2087 1.798813 GTCGAGTTTCAGGATGCGTTT 59.201 47.619 0.00 0.00 34.76 3.60
1980 2088 1.798223 TCGAGTTTCAGGATGCGTTTG 59.202 47.619 0.00 0.00 34.76 2.93
1981 2089 1.135972 CGAGTTTCAGGATGCGTTTGG 60.136 52.381 0.00 0.00 34.76 3.28
1982 2090 1.880027 GAGTTTCAGGATGCGTTTGGT 59.120 47.619 0.00 0.00 34.76 3.67
1983 2091 1.608590 AGTTTCAGGATGCGTTTGGTG 59.391 47.619 0.00 0.00 34.76 4.17
1984 2092 1.336755 GTTTCAGGATGCGTTTGGTGT 59.663 47.619 0.00 0.00 34.76 4.16
1985 2093 1.234821 TTCAGGATGCGTTTGGTGTC 58.765 50.000 0.00 0.00 34.76 3.67
1986 2094 0.948623 TCAGGATGCGTTTGGTGTCG 60.949 55.000 0.00 0.00 34.76 4.35
1992 2100 4.368808 CGTTTGGTGTCGCTGGCG 62.369 66.667 8.80 8.80 41.35 5.69
1993 2101 4.025401 GTTTGGTGTCGCTGGCGG 62.025 66.667 14.94 0.00 40.25 6.13
2008 2116 2.280389 CGGCTGCGTGCTCCATAT 60.280 61.111 0.00 0.00 42.39 1.78
2009 2117 2.313172 CGGCTGCGTGCTCCATATC 61.313 63.158 0.00 0.00 42.39 1.63
2010 2118 1.227645 GGCTGCGTGCTCCATATCA 60.228 57.895 0.00 0.00 42.39 2.15
2011 2119 1.502163 GGCTGCGTGCTCCATATCAC 61.502 60.000 0.00 0.00 42.39 3.06
2012 2120 1.502163 GCTGCGTGCTCCATATCACC 61.502 60.000 0.00 0.00 38.95 4.02
2013 2121 0.179076 CTGCGTGCTCCATATCACCA 60.179 55.000 0.00 0.00 0.00 4.17
2014 2122 0.461870 TGCGTGCTCCATATCACCAC 60.462 55.000 0.00 0.00 0.00 4.16
2015 2123 1.160329 GCGTGCTCCATATCACCACC 61.160 60.000 0.00 0.00 0.00 4.61
2016 2124 0.465705 CGTGCTCCATATCACCACCT 59.534 55.000 0.00 0.00 0.00 4.00
2017 2125 1.134401 CGTGCTCCATATCACCACCTT 60.134 52.381 0.00 0.00 0.00 3.50
2018 2126 2.565841 GTGCTCCATATCACCACCTTC 58.434 52.381 0.00 0.00 0.00 3.46
2019 2127 1.490490 TGCTCCATATCACCACCTTCC 59.510 52.381 0.00 0.00 0.00 3.46
2020 2128 1.541233 GCTCCATATCACCACCTTCCG 60.541 57.143 0.00 0.00 0.00 4.30
2021 2129 0.468226 TCCATATCACCACCTTCCGC 59.532 55.000 0.00 0.00 0.00 5.54
2022 2130 0.535102 CCATATCACCACCTTCCGCC 60.535 60.000 0.00 0.00 0.00 6.13
2023 2131 0.469917 CATATCACCACCTTCCGCCT 59.530 55.000 0.00 0.00 0.00 5.52
2024 2132 0.759346 ATATCACCACCTTCCGCCTC 59.241 55.000 0.00 0.00 0.00 4.70
2025 2133 1.335132 TATCACCACCTTCCGCCTCC 61.335 60.000 0.00 0.00 0.00 4.30
2026 2134 4.760047 CACCACCTTCCGCCTCCG 62.760 72.222 0.00 0.00 0.00 4.63
2045 2153 1.849097 GGTACGATCGTAAGGGCAAG 58.151 55.000 28.31 0.00 38.47 4.01
2046 2154 1.206523 GTACGATCGTAAGGGCAAGC 58.793 55.000 28.31 10.64 38.47 4.01
2047 2155 1.108776 TACGATCGTAAGGGCAAGCT 58.891 50.000 24.97 0.00 38.47 3.74
2048 2156 0.460284 ACGATCGTAAGGGCAAGCTG 60.460 55.000 21.32 0.00 38.47 4.24
2049 2157 1.766143 CGATCGTAAGGGCAAGCTGC 61.766 60.000 7.03 0.00 44.08 5.25
2050 2158 1.766143 GATCGTAAGGGCAAGCTGCG 61.766 60.000 0.00 0.00 46.21 5.18
2051 2159 3.499737 CGTAAGGGCAAGCTGCGG 61.500 66.667 0.00 0.00 46.21 5.69
2052 2160 2.046314 GTAAGGGCAAGCTGCGGA 60.046 61.111 0.00 0.00 46.21 5.54
2053 2161 1.452108 GTAAGGGCAAGCTGCGGAT 60.452 57.895 0.00 0.00 46.21 4.18
2054 2162 1.153168 TAAGGGCAAGCTGCGGATC 60.153 57.895 0.00 0.00 46.21 3.36
2055 2163 2.923426 TAAGGGCAAGCTGCGGATCG 62.923 60.000 0.00 0.00 46.21 3.69
2057 2165 3.567797 GGCAAGCTGCGGATCGTC 61.568 66.667 0.00 0.00 46.21 4.20
2058 2166 3.918220 GCAAGCTGCGGATCGTCG 61.918 66.667 0.00 0.00 31.71 5.12
2059 2167 2.202610 CAAGCTGCGGATCGTCGA 60.203 61.111 0.00 0.00 0.00 4.20
2060 2168 2.202623 AAGCTGCGGATCGTCGAC 60.203 61.111 5.18 5.18 0.00 4.20
2061 2169 3.701604 AAGCTGCGGATCGTCGACC 62.702 63.158 10.58 0.17 0.00 4.79
2066 2174 2.719979 CGGATCGTCGACCGGAAT 59.280 61.111 21.20 0.00 44.59 3.01
2067 2175 1.944035 CGGATCGTCGACCGGAATA 59.056 57.895 21.20 0.00 44.59 1.75
2068 2176 0.385223 CGGATCGTCGACCGGAATAC 60.385 60.000 21.20 1.00 44.59 1.89
2069 2177 0.950116 GGATCGTCGACCGGAATACT 59.050 55.000 9.46 0.00 37.11 2.12
2070 2178 2.146342 GGATCGTCGACCGGAATACTA 58.854 52.381 9.46 0.00 37.11 1.82
2071 2179 2.159234 GGATCGTCGACCGGAATACTAG 59.841 54.545 9.46 0.00 37.11 2.57
2072 2180 0.940126 TCGTCGACCGGAATACTAGC 59.060 55.000 9.46 0.00 37.11 3.42
2073 2181 0.942962 CGTCGACCGGAATACTAGCT 59.057 55.000 9.46 0.00 0.00 3.32
2074 2182 1.070041 CGTCGACCGGAATACTAGCTC 60.070 57.143 9.46 0.00 0.00 4.09
2075 2183 1.945394 GTCGACCGGAATACTAGCTCA 59.055 52.381 9.46 0.00 0.00 4.26
2076 2184 2.553172 GTCGACCGGAATACTAGCTCAT 59.447 50.000 9.46 0.00 0.00 2.90
2077 2185 2.552743 TCGACCGGAATACTAGCTCATG 59.447 50.000 9.46 0.00 0.00 3.07
2078 2186 2.678324 GACCGGAATACTAGCTCATGC 58.322 52.381 9.46 0.00 40.05 4.06
2079 2187 1.344763 ACCGGAATACTAGCTCATGCC 59.655 52.381 9.46 0.00 40.80 4.40
2080 2188 1.338200 CCGGAATACTAGCTCATGCCC 60.338 57.143 0.00 0.00 40.80 5.36
2081 2189 1.620819 CGGAATACTAGCTCATGCCCT 59.379 52.381 0.00 0.00 40.80 5.19
2082 2190 2.611473 CGGAATACTAGCTCATGCCCTG 60.611 54.545 0.00 0.00 40.80 4.45
2083 2191 2.370189 GGAATACTAGCTCATGCCCTGT 59.630 50.000 0.00 0.00 40.80 4.00
2084 2192 3.397482 GAATACTAGCTCATGCCCTGTG 58.603 50.000 0.00 0.00 40.80 3.66
2085 2193 1.866015 TACTAGCTCATGCCCTGTGT 58.134 50.000 0.00 0.00 40.80 3.72
2086 2194 0.539051 ACTAGCTCATGCCCTGTGTC 59.461 55.000 0.00 0.00 40.80 3.67
2087 2195 0.829333 CTAGCTCATGCCCTGTGTCT 59.171 55.000 0.00 0.00 40.80 3.41
2088 2196 2.034878 CTAGCTCATGCCCTGTGTCTA 58.965 52.381 0.00 0.00 40.80 2.59
2089 2197 1.279496 AGCTCATGCCCTGTGTCTAA 58.721 50.000 0.00 0.00 40.80 2.10
2090 2198 1.209019 AGCTCATGCCCTGTGTCTAAG 59.791 52.381 0.00 0.00 40.80 2.18
2091 2199 1.661341 CTCATGCCCTGTGTCTAAGC 58.339 55.000 0.00 0.00 0.00 3.09
2092 2200 0.983467 TCATGCCCTGTGTCTAAGCA 59.017 50.000 0.00 0.00 37.94 3.91
2093 2201 1.561076 TCATGCCCTGTGTCTAAGCAT 59.439 47.619 0.00 0.00 44.66 3.79
2094 2202 2.025981 TCATGCCCTGTGTCTAAGCATT 60.026 45.455 0.00 0.00 42.04 3.56
2095 2203 2.584835 TGCCCTGTGTCTAAGCATTT 57.415 45.000 0.00 0.00 0.00 2.32
2096 2204 2.436417 TGCCCTGTGTCTAAGCATTTC 58.564 47.619 0.00 0.00 0.00 2.17
2097 2205 2.224744 TGCCCTGTGTCTAAGCATTTCA 60.225 45.455 0.00 0.00 0.00 2.69
2098 2206 2.162408 GCCCTGTGTCTAAGCATTTCAC 59.838 50.000 0.00 0.00 0.00 3.18
2099 2207 2.416547 CCCTGTGTCTAAGCATTTCACG 59.583 50.000 0.00 0.00 32.55 4.35
2100 2208 3.067106 CCTGTGTCTAAGCATTTCACGT 58.933 45.455 0.00 0.00 32.55 4.49
2101 2209 3.123621 CCTGTGTCTAAGCATTTCACGTC 59.876 47.826 0.00 0.00 32.55 4.34
2102 2210 3.990092 TGTGTCTAAGCATTTCACGTCT 58.010 40.909 0.00 0.00 32.55 4.18
2103 2211 3.987868 TGTGTCTAAGCATTTCACGTCTC 59.012 43.478 0.00 0.00 32.55 3.36
2104 2212 4.238514 GTGTCTAAGCATTTCACGTCTCT 58.761 43.478 0.00 0.00 0.00 3.10
2105 2213 4.324936 GTGTCTAAGCATTTCACGTCTCTC 59.675 45.833 0.00 0.00 0.00 3.20
2106 2214 3.860536 GTCTAAGCATTTCACGTCTCTCC 59.139 47.826 0.00 0.00 0.00 3.71
2107 2215 3.764434 TCTAAGCATTTCACGTCTCTCCT 59.236 43.478 0.00 0.00 0.00 3.69
2108 2216 2.376808 AGCATTTCACGTCTCTCCTG 57.623 50.000 0.00 0.00 0.00 3.86
2109 2217 1.620819 AGCATTTCACGTCTCTCCTGT 59.379 47.619 0.00 0.00 0.00 4.00
2110 2218 1.728971 GCATTTCACGTCTCTCCTGTG 59.271 52.381 0.00 0.00 34.96 3.66
2111 2219 2.341257 CATTTCACGTCTCTCCTGTGG 58.659 52.381 0.00 0.00 34.43 4.17
2112 2220 0.033504 TTTCACGTCTCTCCTGTGGC 59.966 55.000 0.00 0.00 34.43 5.01
2113 2221 2.126307 CACGTCTCTCCTGTGGCG 60.126 66.667 0.00 0.00 40.13 5.69
2114 2222 2.597805 ACGTCTCTCCTGTGGCGT 60.598 61.111 0.00 0.00 42.07 5.68
2115 2223 2.201022 ACGTCTCTCCTGTGGCGTT 61.201 57.895 0.00 0.00 43.96 4.84
2116 2224 1.006102 CGTCTCTCCTGTGGCGTTT 60.006 57.895 0.00 0.00 31.27 3.60
2117 2225 0.600255 CGTCTCTCCTGTGGCGTTTT 60.600 55.000 0.00 0.00 31.27 2.43
2118 2226 0.868406 GTCTCTCCTGTGGCGTTTTG 59.132 55.000 0.00 0.00 0.00 2.44
2119 2227 0.250295 TCTCTCCTGTGGCGTTTTGG 60.250 55.000 0.00 0.00 0.00 3.28
2120 2228 0.250295 CTCTCCTGTGGCGTTTTGGA 60.250 55.000 0.00 0.00 0.00 3.53
2121 2229 0.400213 TCTCCTGTGGCGTTTTGGAT 59.600 50.000 0.00 0.00 0.00 3.41
2122 2230 0.523072 CTCCTGTGGCGTTTTGGATG 59.477 55.000 0.00 0.00 0.00 3.51
2123 2231 0.179004 TCCTGTGGCGTTTTGGATGT 60.179 50.000 0.00 0.00 0.00 3.06
2124 2232 1.072489 TCCTGTGGCGTTTTGGATGTA 59.928 47.619 0.00 0.00 0.00 2.29
2125 2233 1.468520 CCTGTGGCGTTTTGGATGTAG 59.531 52.381 0.00 0.00 0.00 2.74
2126 2234 0.878416 TGTGGCGTTTTGGATGTAGC 59.122 50.000 0.00 0.00 0.00 3.58
2127 2235 0.179200 GTGGCGTTTTGGATGTAGCG 60.179 55.000 0.00 0.00 0.00 4.26
2128 2236 1.226295 GGCGTTTTGGATGTAGCGC 60.226 57.895 0.00 0.00 43.46 5.92
2129 2237 1.499949 GCGTTTTGGATGTAGCGCA 59.500 52.632 11.47 0.00 43.62 6.09
2130 2238 0.793104 GCGTTTTGGATGTAGCGCAC 60.793 55.000 11.47 6.60 43.62 5.34
2131 2239 0.796312 CGTTTTGGATGTAGCGCACT 59.204 50.000 11.47 0.00 0.00 4.40
2132 2240 1.464023 CGTTTTGGATGTAGCGCACTG 60.464 52.381 11.47 0.00 0.00 3.66
2133 2241 0.521291 TTTTGGATGTAGCGCACTGC 59.479 50.000 11.47 0.00 46.98 4.40
2142 2250 3.782244 GCGCACTGCTCGAACAGG 61.782 66.667 19.38 9.76 42.21 4.00
2143 2251 2.356313 CGCACTGCTCGAACAGGT 60.356 61.111 19.38 3.31 42.21 4.00
2144 2252 1.956170 CGCACTGCTCGAACAGGTT 60.956 57.895 19.38 0.00 42.21 3.50
2145 2253 1.862806 GCACTGCTCGAACAGGTTC 59.137 57.895 19.38 4.90 42.21 3.62
2146 2254 0.601311 GCACTGCTCGAACAGGTTCT 60.601 55.000 19.38 0.00 42.21 3.01
2147 2255 1.143305 CACTGCTCGAACAGGTTCTG 58.857 55.000 19.38 5.40 42.21 3.02
2148 2256 0.034059 ACTGCTCGAACAGGTTCTGG 59.966 55.000 19.38 4.30 42.21 3.86
2158 2266 2.414612 ACAGGTTCTGGAGTAAACCCA 58.585 47.619 0.81 0.00 44.98 4.51
2163 2271 3.010420 GTTCTGGAGTAAACCCATCTGC 58.990 50.000 0.00 0.00 32.49 4.26
2205 2315 6.408858 AGTCTAGAAATACAACACGCATTG 57.591 37.500 0.00 0.00 35.59 2.82
2219 2329 3.358700 CACGCATTGCATCATTATTACGC 59.641 43.478 9.69 0.00 0.00 4.42
2223 2333 3.600717 TTGCATCATTATTACGCCGTG 57.399 42.857 0.00 0.00 0.00 4.94
2224 2334 1.262950 TGCATCATTATTACGCCGTGC 59.737 47.619 0.00 0.00 0.00 5.34
2225 2335 1.262950 GCATCATTATTACGCCGTGCA 59.737 47.619 0.00 0.00 0.00 4.57
2226 2336 2.903678 CATCATTATTACGCCGTGCAC 58.096 47.619 6.82 6.82 0.00 4.57
2227 2337 2.011540 TCATTATTACGCCGTGCACA 57.988 45.000 18.64 0.00 0.00 4.57
2228 2338 1.661617 TCATTATTACGCCGTGCACAC 59.338 47.619 18.64 7.25 0.00 3.82
2229 2339 1.395262 CATTATTACGCCGTGCACACA 59.605 47.619 18.64 0.00 0.00 3.72
2321 2431 1.334869 GTACTACCCATCACCCGTACG 59.665 57.143 8.69 8.69 0.00 3.67
2323 2433 2.359570 CTACCCATCACCCGTACGGC 62.360 65.000 29.15 0.00 33.26 5.68
2390 2501 0.954938 GGGTGCGGCGGTAAGTTTAA 60.955 55.000 9.78 0.00 0.00 1.52
2393 2504 2.577450 GTGCGGCGGTAAGTTTAAAAG 58.423 47.619 9.78 0.00 0.00 2.27
2758 2869 3.406361 GACGTGCTGCACCGACAG 61.406 66.667 25.61 14.21 40.80 3.51
2851 2962 2.827190 CTGCGCCATGGCTGTGAT 60.827 61.111 33.07 0.00 39.32 3.06
2911 3025 1.006805 GGATCGGGATCGCTGTCAG 60.007 63.158 8.28 0.00 38.69 3.51
2927 3041 4.786609 GCTGTCAGATTAGTTTAATGCCGC 60.787 45.833 3.32 0.00 0.00 6.53
2934 3048 1.154035 GTTTAATGCCGCGCTGCTT 60.154 52.632 24.31 15.65 0.00 3.91
2948 3062 1.270465 GCTGCTTGCTTGATGGGTTTT 60.270 47.619 0.00 0.00 38.95 2.43
2978 3094 4.107820 GAGATCCCTGGAATATAAGGCCT 58.892 47.826 0.00 0.00 31.71 5.19
2983 3099 3.251484 CCTGGAATATAAGGCCTGAGGA 58.749 50.000 5.69 0.00 0.00 3.71
2998 3114 3.569690 GGATGGGTTTACGCGGCG 61.570 66.667 22.36 22.36 0.00 6.46
3022 3138 2.431771 TCGACGGAATGCGTGGTG 60.432 61.111 3.60 0.00 0.00 4.17
3105 3221 1.447314 ACGGTCCCGAATCGAAAGC 60.447 57.895 13.54 0.07 42.83 3.51
3114 3230 1.706287 GAATCGAAAGCACGGAGGGC 61.706 60.000 0.00 0.00 0.00 5.19
3130 3246 3.431725 GCCCGGCTTGTGCAGTAC 61.432 66.667 0.71 0.00 41.91 2.73
3133 3249 1.447838 CCGGCTTGTGCAGTACGAT 60.448 57.895 0.00 0.00 41.91 3.73
3134 3250 0.179121 CCGGCTTGTGCAGTACGATA 60.179 55.000 0.00 0.00 41.91 2.92
3135 3251 1.200483 CGGCTTGTGCAGTACGATAG 58.800 55.000 0.00 0.00 41.91 2.08
3137 3253 1.927174 GGCTTGTGCAGTACGATAGTG 59.073 52.381 0.00 0.00 46.63 2.74
3138 3254 2.607187 GCTTGTGCAGTACGATAGTGT 58.393 47.619 0.00 0.00 44.96 3.55
3139 3255 3.428452 GGCTTGTGCAGTACGATAGTGTA 60.428 47.826 0.00 0.00 46.63 2.90
3140 3256 4.171005 GCTTGTGCAGTACGATAGTGTAA 58.829 43.478 0.00 0.00 44.96 2.41
3141 3257 4.624024 GCTTGTGCAGTACGATAGTGTAAA 59.376 41.667 0.00 0.00 44.96 2.01
3142 3258 5.444218 GCTTGTGCAGTACGATAGTGTAAAC 60.444 44.000 0.00 0.00 44.96 2.01
3143 3259 8.295121 GCTTGTGCAGTACGATAGTGTAAACC 62.295 46.154 0.00 0.00 44.96 3.27
3148 3264 2.981997 CGATAGTGTAAACCCGGGC 58.018 57.895 24.08 4.22 0.00 6.13
3149 3265 0.176219 CGATAGTGTAAACCCGGGCA 59.824 55.000 24.08 7.58 0.00 5.36
3150 3266 1.202604 CGATAGTGTAAACCCGGGCAT 60.203 52.381 24.08 12.83 0.00 4.40
3151 3267 2.743838 CGATAGTGTAAACCCGGGCATT 60.744 50.000 24.08 19.09 0.00 3.56
3152 3268 2.883122 TAGTGTAAACCCGGGCATTT 57.117 45.000 24.08 17.59 0.00 2.32
3153 3269 1.541379 AGTGTAAACCCGGGCATTTC 58.459 50.000 24.08 14.60 0.00 2.17
3154 3270 1.074889 AGTGTAAACCCGGGCATTTCT 59.925 47.619 24.08 9.71 0.00 2.52
3155 3271 1.471287 GTGTAAACCCGGGCATTTCTC 59.529 52.381 24.08 11.13 0.00 2.87
3156 3272 0.730840 GTAAACCCGGGCATTTCTCG 59.269 55.000 24.08 0.00 0.00 4.04
3157 3273 0.393267 TAAACCCGGGCATTTCTCGG 60.393 55.000 24.08 0.00 43.05 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.800544 ACACTGTTGAGCGTATGTTGTC 59.199 45.455 0.00 0.00 0.00 3.18
1 2 2.800544 GACACTGTTGAGCGTATGTTGT 59.199 45.455 0.00 0.00 0.00 3.32
2 3 2.157668 GGACACTGTTGAGCGTATGTTG 59.842 50.000 0.00 0.00 0.00 3.33
3 4 2.224185 TGGACACTGTTGAGCGTATGTT 60.224 45.455 0.00 0.00 0.00 2.71
5 6 2.078849 TGGACACTGTTGAGCGTATG 57.921 50.000 0.00 0.00 0.00 2.39
6 7 3.002791 CAATGGACACTGTTGAGCGTAT 58.997 45.455 0.00 0.00 0.00 3.06
7 8 2.412870 CAATGGACACTGTTGAGCGTA 58.587 47.619 0.00 0.00 0.00 4.42
8 9 1.229428 CAATGGACACTGTTGAGCGT 58.771 50.000 0.00 0.00 0.00 5.07
9 10 0.518636 CCAATGGACACTGTTGAGCG 59.481 55.000 0.00 0.00 0.00 5.03
10 11 0.242017 GCCAATGGACACTGTTGAGC 59.758 55.000 2.05 0.00 0.00 4.26
11 12 0.883833 GGCCAATGGACACTGTTGAG 59.116 55.000 2.05 0.00 0.00 3.02
12 13 0.888736 CGGCCAATGGACACTGTTGA 60.889 55.000 5.73 0.00 0.00 3.18
13 14 1.580942 CGGCCAATGGACACTGTTG 59.419 57.895 5.73 0.00 0.00 3.33
14 15 2.268076 GCGGCCAATGGACACTGTT 61.268 57.895 5.73 0.00 0.00 3.16
15 16 2.672996 GCGGCCAATGGACACTGT 60.673 61.111 5.73 0.00 0.00 3.55
16 17 1.926511 GAAGCGGCCAATGGACACTG 61.927 60.000 5.73 0.00 0.00 3.66
17 18 1.675641 GAAGCGGCCAATGGACACT 60.676 57.895 5.73 0.00 0.00 3.55
59 60 1.402259 CGACGATGTAGAAGCTGGAGT 59.598 52.381 0.00 0.00 0.00 3.85
85 86 1.142748 ACACATGCTAGAGAGGCGC 59.857 57.895 0.00 0.00 0.00 6.53
126 127 2.732412 GCTAGCTGCTGGATCGATTA 57.268 50.000 17.76 0.00 38.95 1.75
160 161 1.243342 TTGATTCACAAGCCGGGCAG 61.243 55.000 23.09 15.66 34.20 4.85
172 173 5.332743 ACTTAAAGCCCCTTGATTGATTCA 58.667 37.500 0.00 0.00 0.00 2.57
186 187 2.660236 CACGAGTACACGACTTAAAGCC 59.340 50.000 19.65 0.00 39.06 4.35
193 194 1.334779 GCAAGACACGAGTACACGACT 60.335 52.381 19.65 11.69 42.90 4.18
255 256 1.063027 CGGTGTCATGCATGTTAGCTG 59.937 52.381 25.43 14.89 34.99 4.24
285 287 1.154016 CTCGCCTGATCGTGTTCGT 60.154 57.895 0.00 0.00 38.33 3.85
289 291 2.182791 CTGCTCGCCTGATCGTGT 59.817 61.111 0.00 0.00 0.00 4.49
341 343 3.385384 CTCTCTGGCGAGGGTGCA 61.385 66.667 0.00 0.00 37.86 4.57
352 362 2.061773 CACACCGTAAACTGCTCTCTG 58.938 52.381 0.00 0.00 0.00 3.35
418 428 3.856638 GCAAACAATTCATGAAGGTGCGA 60.857 43.478 14.54 0.00 0.00 5.10
465 475 8.585018 AGTACTTTGTTTGGATGGGAAAATTAG 58.415 33.333 0.00 0.00 0.00 1.73
466 476 8.364142 CAGTACTTTGTTTGGATGGGAAAATTA 58.636 33.333 0.00 0.00 0.00 1.40
467 477 7.216494 CAGTACTTTGTTTGGATGGGAAAATT 58.784 34.615 0.00 0.00 0.00 1.82
507 518 6.541278 AGTTTTGGTTGGTTAGTTACTCTGTC 59.459 38.462 0.00 0.00 0.00 3.51
526 537 9.249457 GAGGATTTTTAGAAGAAACCAGTTTTG 57.751 33.333 0.00 0.00 32.11 2.44
527 538 8.977412 TGAGGATTTTTAGAAGAAACCAGTTTT 58.023 29.630 0.00 0.00 32.11 2.43
528 539 8.533569 TGAGGATTTTTAGAAGAAACCAGTTT 57.466 30.769 0.00 0.00 35.14 2.66
529 540 8.533569 TTGAGGATTTTTAGAAGAAACCAGTT 57.466 30.769 0.00 0.00 0.00 3.16
531 542 9.816354 TTTTTGAGGATTTTTAGAAGAAACCAG 57.184 29.630 0.00 0.00 0.00 4.00
532 543 9.594478 GTTTTTGAGGATTTTTAGAAGAAACCA 57.406 29.630 0.00 0.00 0.00 3.67
533 544 9.817809 AGTTTTTGAGGATTTTTAGAAGAAACC 57.182 29.630 0.00 0.00 0.00 3.27
535 546 9.730420 CGAGTTTTTGAGGATTTTTAGAAGAAA 57.270 29.630 0.00 0.00 0.00 2.52
538 549 9.516314 AAACGAGTTTTTGAGGATTTTTAGAAG 57.484 29.630 0.00 0.00 0.00 2.85
540 551 9.511144 GAAAACGAGTTTTTGAGGATTTTTAGA 57.489 29.630 14.18 0.00 42.26 2.10
586 599 4.447138 AAGTGGTTGTTTGGATACTGGA 57.553 40.909 0.00 0.00 37.61 3.86
589 602 8.528044 TTTTCTTAAGTGGTTGTTTGGATACT 57.472 30.769 1.63 0.00 37.61 2.12
611 624 2.438392 ACACGAGACCTTCCCTTCTTTT 59.562 45.455 0.00 0.00 0.00 2.27
615 628 2.143925 CAAACACGAGACCTTCCCTTC 58.856 52.381 0.00 0.00 0.00 3.46
616 629 1.489230 ACAAACACGAGACCTTCCCTT 59.511 47.619 0.00 0.00 0.00 3.95
617 630 1.129058 ACAAACACGAGACCTTCCCT 58.871 50.000 0.00 0.00 0.00 4.20
618 631 1.963172 AACAAACACGAGACCTTCCC 58.037 50.000 0.00 0.00 0.00 3.97
619 632 2.289820 GGAAACAAACACGAGACCTTCC 59.710 50.000 0.00 0.00 0.00 3.46
620 633 2.289820 GGGAAACAAACACGAGACCTTC 59.710 50.000 0.00 0.00 0.00 3.46
621 634 2.092592 AGGGAAACAAACACGAGACCTT 60.093 45.455 0.00 0.00 0.00 3.50
622 635 1.489230 AGGGAAACAAACACGAGACCT 59.511 47.619 0.00 0.00 0.00 3.85
623 636 1.871676 GAGGGAAACAAACACGAGACC 59.128 52.381 0.00 0.00 0.00 3.85
624 637 2.557317 TGAGGGAAACAAACACGAGAC 58.443 47.619 0.00 0.00 0.00 3.36
625 638 2.992124 TGAGGGAAACAAACACGAGA 57.008 45.000 0.00 0.00 0.00 4.04
626 639 3.138304 TCATGAGGGAAACAAACACGAG 58.862 45.455 0.00 0.00 0.00 4.18
627 640 3.201353 TCATGAGGGAAACAAACACGA 57.799 42.857 0.00 0.00 0.00 4.35
628 641 3.980646 TTCATGAGGGAAACAAACACG 57.019 42.857 0.00 0.00 0.00 4.49
714 727 4.873827 GGACTAGCAACATAACCGATTTGA 59.126 41.667 0.00 0.00 0.00 2.69
716 729 5.099042 AGGACTAGCAACATAACCGATTT 57.901 39.130 0.00 0.00 0.00 2.17
732 745 3.072768 GGACTACCAGCTAGCTAGGACTA 59.927 52.174 28.87 16.39 35.97 2.59
744 757 2.861147 AAGACAAAGGGACTACCAGC 57.139 50.000 0.00 0.00 43.89 4.85
819 832 9.780186 GCAATACCTGTATACTTCCTTTATTCT 57.220 33.333 4.17 0.00 0.00 2.40
820 833 9.000486 GGCAATACCTGTATACTTCCTTTATTC 58.000 37.037 4.17 0.00 34.51 1.75
821 834 7.942894 GGGCAATACCTGTATACTTCCTTTATT 59.057 37.037 4.17 0.00 39.10 1.40
822 835 7.294958 AGGGCAATACCTGTATACTTCCTTTAT 59.705 37.037 4.17 0.00 40.04 1.40
823 836 6.618196 AGGGCAATACCTGTATACTTCCTTTA 59.382 38.462 4.17 0.00 40.04 1.85
824 837 5.432060 AGGGCAATACCTGTATACTTCCTTT 59.568 40.000 4.17 0.00 40.04 3.11
825 838 4.975794 AGGGCAATACCTGTATACTTCCTT 59.024 41.667 4.17 0.00 40.04 3.36
826 839 4.567857 AGGGCAATACCTGTATACTTCCT 58.432 43.478 4.17 0.00 40.04 3.36
827 840 4.976540 AGGGCAATACCTGTATACTTCC 57.023 45.455 4.17 0.00 40.04 3.46
838 851 0.837272 TAGAGGTGCAGGGCAATACC 59.163 55.000 0.00 0.00 41.47 2.73
844 857 2.092914 ACTGTTTATAGAGGTGCAGGGC 60.093 50.000 0.00 0.00 0.00 5.19
854 867 7.123383 TGATCTCAGGGTGTACTGTTTATAGA 58.877 38.462 0.00 0.00 39.48 1.98
872 885 5.362143 CCCACTGATCTTTCTACTGATCTCA 59.638 44.000 0.00 0.00 39.63 3.27
873 886 5.596361 TCCCACTGATCTTTCTACTGATCTC 59.404 44.000 0.00 0.00 39.63 2.75
874 887 5.362430 GTCCCACTGATCTTTCTACTGATCT 59.638 44.000 0.00 0.00 39.63 2.75
875 888 5.127845 TGTCCCACTGATCTTTCTACTGATC 59.872 44.000 0.00 0.00 39.43 2.92
876 889 5.026121 TGTCCCACTGATCTTTCTACTGAT 58.974 41.667 0.00 0.00 0.00 2.90
877 890 4.220821 GTGTCCCACTGATCTTTCTACTGA 59.779 45.833 0.00 0.00 0.00 3.41
878 891 4.499183 GTGTCCCACTGATCTTTCTACTG 58.501 47.826 0.00 0.00 0.00 2.74
879 892 3.193691 CGTGTCCCACTGATCTTTCTACT 59.806 47.826 0.00 0.00 31.34 2.57
880 893 3.512680 CGTGTCCCACTGATCTTTCTAC 58.487 50.000 0.00 0.00 31.34 2.59
881 894 2.496070 CCGTGTCCCACTGATCTTTCTA 59.504 50.000 0.00 0.00 31.34 2.10
882 895 1.276421 CCGTGTCCCACTGATCTTTCT 59.724 52.381 0.00 0.00 31.34 2.52
883 896 1.726853 CCGTGTCCCACTGATCTTTC 58.273 55.000 0.00 0.00 31.34 2.62
884 897 0.321653 GCCGTGTCCCACTGATCTTT 60.322 55.000 0.00 0.00 31.34 2.52
885 898 1.194781 AGCCGTGTCCCACTGATCTT 61.195 55.000 0.00 0.00 31.34 2.40
886 899 1.610673 AGCCGTGTCCCACTGATCT 60.611 57.895 0.00 0.00 31.34 2.75
887 900 1.448540 CAGCCGTGTCCCACTGATC 60.449 63.158 0.00 0.00 31.67 2.92
888 901 2.665000 CAGCCGTGTCCCACTGAT 59.335 61.111 0.00 0.00 31.67 2.90
889 902 4.314440 GCAGCCGTGTCCCACTGA 62.314 66.667 0.00 0.00 31.67 3.41
890 903 4.624364 TGCAGCCGTGTCCCACTG 62.624 66.667 0.00 0.00 31.34 3.66
891 904 4.626081 GTGCAGCCGTGTCCCACT 62.626 66.667 0.00 0.00 31.34 4.00
895 908 1.961180 ATAGAGGTGCAGCCGTGTCC 61.961 60.000 13.29 0.00 43.70 4.02
896 909 0.744874 TATAGAGGTGCAGCCGTGTC 59.255 55.000 13.29 3.30 43.70 3.67
897 910 1.191535 TTATAGAGGTGCAGCCGTGT 58.808 50.000 13.29 0.71 43.70 4.49
898 911 1.933853 GTTTATAGAGGTGCAGCCGTG 59.066 52.381 13.29 0.00 43.70 4.94
899 912 1.553248 TGTTTATAGAGGTGCAGCCGT 59.447 47.619 13.29 2.19 43.70 5.68
900 913 2.205074 CTGTTTATAGAGGTGCAGCCG 58.795 52.381 13.29 0.00 43.70 5.52
901 914 3.268023 ACTGTTTATAGAGGTGCAGCC 57.732 47.619 13.29 4.65 37.58 4.85
902 915 4.567159 GTGTACTGTTTATAGAGGTGCAGC 59.433 45.833 8.11 8.11 0.00 5.25
903 916 5.109903 GGTGTACTGTTTATAGAGGTGCAG 58.890 45.833 0.00 0.00 0.00 4.41
904 917 4.081309 GGGTGTACTGTTTATAGAGGTGCA 60.081 45.833 0.00 0.00 0.00 4.57
905 918 4.161754 AGGGTGTACTGTTTATAGAGGTGC 59.838 45.833 0.00 0.00 0.00 5.01
906 919 5.421056 TCAGGGTGTACTGTTTATAGAGGTG 59.579 44.000 0.00 0.00 39.48 4.00
907 920 5.586877 TCAGGGTGTACTGTTTATAGAGGT 58.413 41.667 0.00 0.00 39.48 3.85
908 921 5.892119 TCTCAGGGTGTACTGTTTATAGAGG 59.108 44.000 0.00 0.00 39.48 3.69
909 922 7.285629 TGATCTCAGGGTGTACTGTTTATAGAG 59.714 40.741 0.00 0.00 39.48 2.43
910 923 7.123383 TGATCTCAGGGTGTACTGTTTATAGA 58.877 38.462 0.00 0.00 39.48 1.98
911 924 7.348080 TGATCTCAGGGTGTACTGTTTATAG 57.652 40.000 0.00 0.00 39.48 1.31
912 925 7.348080 CTGATCTCAGGGTGTACTGTTTATA 57.652 40.000 0.00 0.00 40.20 0.98
913 926 6.227298 CTGATCTCAGGGTGTACTGTTTAT 57.773 41.667 0.00 0.00 40.20 1.40
914 927 5.661056 CTGATCTCAGGGTGTACTGTTTA 57.339 43.478 0.00 0.00 40.20 2.01
915 928 4.543590 CTGATCTCAGGGTGTACTGTTT 57.456 45.455 0.00 0.00 40.20 2.83
928 941 4.037327 CCGCTGATCTTTCTACTGATCTCA 59.963 45.833 0.00 0.00 39.63 3.27
933 946 2.427453 GTCCCGCTGATCTTTCTACTGA 59.573 50.000 0.00 0.00 0.00 3.41
936 949 2.541556 GTGTCCCGCTGATCTTTCTAC 58.458 52.381 0.00 0.00 0.00 2.59
953 966 4.039357 CGAGTCCTGACGCCGTGT 62.039 66.667 0.00 0.00 36.20 4.49
954 967 4.778415 CCGAGTCCTGACGCCGTG 62.778 72.222 0.00 0.00 36.20 4.94
959 972 2.432628 GTTGGCCGAGTCCTGACG 60.433 66.667 0.00 0.00 36.20 4.35
960 973 1.668151 GTGTTGGCCGAGTCCTGAC 60.668 63.158 0.00 0.00 0.00 3.51
961 974 1.816863 GAGTGTTGGCCGAGTCCTGA 61.817 60.000 0.00 0.00 0.00 3.86
962 975 1.374758 GAGTGTTGGCCGAGTCCTG 60.375 63.158 0.00 0.00 0.00 3.86
963 976 1.534235 AGAGTGTTGGCCGAGTCCT 60.534 57.895 0.00 0.00 0.00 3.85
964 977 1.079750 GAGAGTGTTGGCCGAGTCC 60.080 63.158 0.00 0.00 0.00 3.85
965 978 1.444553 CGAGAGTGTTGGCCGAGTC 60.445 63.158 0.00 0.00 0.00 3.36
966 979 2.201022 ACGAGAGTGTTGGCCGAGT 61.201 57.895 0.00 0.00 46.97 4.18
967 980 2.651361 ACGAGAGTGTTGGCCGAG 59.349 61.111 0.00 0.00 46.97 4.63
978 991 1.814169 GCGGGGGCTTTAACGAGAG 60.814 63.158 0.00 0.00 0.00 3.20
979 992 2.234913 GAGCGGGGGCTTTAACGAGA 62.235 60.000 0.00 0.00 0.00 4.04
980 993 1.814169 GAGCGGGGGCTTTAACGAG 60.814 63.158 0.00 0.00 0.00 4.18
981 994 2.266689 GAGCGGGGGCTTTAACGA 59.733 61.111 0.00 0.00 0.00 3.85
982 995 2.822701 GGAGCGGGGGCTTTAACG 60.823 66.667 0.00 0.00 0.00 3.18
983 996 2.044555 GTGGAGCGGGGGCTTTAAC 61.045 63.158 0.00 0.00 0.00 2.01
984 997 2.228480 AGTGGAGCGGGGGCTTTAA 61.228 57.895 0.00 0.00 0.00 1.52
985 998 2.609610 AGTGGAGCGGGGGCTTTA 60.610 61.111 0.00 0.00 0.00 1.85
986 999 4.351054 CAGTGGAGCGGGGGCTTT 62.351 66.667 0.00 0.00 0.00 3.51
990 1003 4.785453 GAAGCAGTGGAGCGGGGG 62.785 72.222 0.00 0.00 40.15 5.40
991 1004 3.259633 AAGAAGCAGTGGAGCGGGG 62.260 63.158 0.00 0.00 40.15 5.73
992 1005 2.037136 CAAGAAGCAGTGGAGCGGG 61.037 63.158 0.00 0.00 40.15 6.13
993 1006 2.037136 CCAAGAAGCAGTGGAGCGG 61.037 63.158 0.00 0.00 40.15 5.52
994 1007 2.684843 GCCAAGAAGCAGTGGAGCG 61.685 63.158 0.00 0.00 40.15 5.03
995 1008 1.601759 TGCCAAGAAGCAGTGGAGC 60.602 57.895 0.00 0.00 38.00 4.70
996 1009 4.806936 TGCCAAGAAGCAGTGGAG 57.193 55.556 0.00 0.00 38.00 3.86
1032 1045 9.832445 GAATTACCAGAAGAACAGGTTGATATA 57.168 33.333 0.00 0.00 39.17 0.86
1035 1048 6.542821 TGAATTACCAGAAGAACAGGTTGAT 58.457 36.000 0.00 0.00 39.17 2.57
1036 1049 5.935945 TGAATTACCAGAAGAACAGGTTGA 58.064 37.500 0.00 0.00 39.17 3.18
1037 1050 6.349611 CCATGAATTACCAGAAGAACAGGTTG 60.350 42.308 0.00 0.00 39.17 3.77
1038 1051 5.711976 CCATGAATTACCAGAAGAACAGGTT 59.288 40.000 0.00 0.00 39.17 3.50
1041 1113 6.430925 TGAACCATGAATTACCAGAAGAACAG 59.569 38.462 0.00 0.00 0.00 3.16
1046 1118 5.939883 TGACTGAACCATGAATTACCAGAAG 59.060 40.000 0.00 0.00 0.00 2.85
1055 1131 3.584406 TCCTGACTGACTGAACCATGAAT 59.416 43.478 0.00 0.00 0.00 2.57
1060 1136 2.242926 CTCTCCTGACTGACTGAACCA 58.757 52.381 0.00 0.00 0.00 3.67
1061 1145 1.548269 CCTCTCCTGACTGACTGAACC 59.452 57.143 0.00 0.00 0.00 3.62
1062 1146 1.548269 CCCTCTCCTGACTGACTGAAC 59.452 57.143 0.00 0.00 0.00 3.18
1074 1158 1.215673 TCGCTTAGACATCCCTCTCCT 59.784 52.381 0.00 0.00 0.00 3.69
1077 1161 3.019799 TCTTCGCTTAGACATCCCTCT 57.980 47.619 0.00 0.00 0.00 3.69
1127 1226 2.224606 CTCTTCTTCTGCTTTGTGCCA 58.775 47.619 0.00 0.00 42.00 4.92
1132 1231 3.056588 AGAGGCTCTTCTTCTGCTTTG 57.943 47.619 12.24 0.00 0.00 2.77
1133 1232 4.716287 AGATAGAGGCTCTTCTTCTGCTTT 59.284 41.667 24.13 0.00 0.00 3.51
1135 1234 3.638160 CAGATAGAGGCTCTTCTTCTGCT 59.362 47.826 24.13 6.93 31.78 4.24
1136 1235 3.243839 CCAGATAGAGGCTCTTCTTCTGC 60.244 52.174 28.55 12.98 34.54 4.26
1137 1236 3.960102 ACCAGATAGAGGCTCTTCTTCTG 59.040 47.826 27.75 27.75 35.04 3.02
1140 1239 4.619679 AGAACCAGATAGAGGCTCTTCTT 58.380 43.478 24.13 8.19 27.26 2.52
1169 1268 1.702182 TGATGAAGCCTTTGTGCCAA 58.298 45.000 0.00 0.00 0.00 4.52
1178 1277 3.478509 GATCTTGCAGATGATGAAGCCT 58.521 45.455 3.76 0.00 34.53 4.58
1186 1285 0.528466 GGCGTCGATCTTGCAGATGA 60.528 55.000 0.00 0.00 34.53 2.92
1245 1350 3.782244 GCCGCGCTCAAGTGACAG 61.782 66.667 5.56 0.00 0.00 3.51
1325 1430 0.450983 CCGTGTCGTAGAAGAGGGTC 59.549 60.000 0.00 0.00 39.69 4.46
1343 1448 4.736896 GACAGTCCGGCGGTGTCC 62.737 72.222 29.32 16.64 35.54 4.02
1392 1497 3.056328 GAAGGTGTTGGAGCCGCC 61.056 66.667 0.00 0.00 37.10 6.13
1394 1499 1.672356 CAGGAAGGTGTTGGAGCCG 60.672 63.158 0.00 0.00 0.00 5.52
1454 1559 2.685017 ACAGGCCGCTCCATGAGA 60.685 61.111 0.00 0.00 37.29 3.27
1455 1560 2.513204 CACAGGCCGCTCCATGAG 60.513 66.667 0.00 0.00 37.29 2.90
1501 1606 3.052082 GGTCGTCGTCTCCGGTCA 61.052 66.667 0.00 0.00 33.95 4.02
1505 1610 3.432588 AGCAGGTCGTCGTCTCCG 61.433 66.667 0.00 0.00 0.00 4.63
1507 1612 2.505118 GCAGCAGGTCGTCGTCTC 60.505 66.667 0.00 0.00 0.00 3.36
1541 1646 2.258286 GGCGTCGGCATGCTTTTT 59.742 55.556 18.92 0.00 42.47 1.94
1605 1713 0.810031 GACACGAATATGGTGCGCCT 60.810 55.000 18.96 5.67 38.98 5.52
1674 1782 2.753043 CTGCCGCCTCCATTTGCT 60.753 61.111 0.00 0.00 0.00 3.91
1688 1796 3.415087 AGCATCCACTCCCCCTGC 61.415 66.667 0.00 0.00 0.00 4.85
1691 1799 4.512914 GGCAGCATCCACTCCCCC 62.513 72.222 0.00 0.00 0.00 5.40
1776 1884 2.729479 CGACCTGGCAGGAGCAGAT 61.729 63.158 38.99 16.59 44.61 2.90
1821 1929 4.821589 CTTCCAGTCCGGCCGCTC 62.822 72.222 22.85 14.85 33.14 5.03
1825 1933 2.190578 CCATCTTCCAGTCCGGCC 59.809 66.667 0.00 0.00 33.14 6.13
1832 1940 1.227089 CTCGTCGGCCATCTTCCAG 60.227 63.158 2.24 0.00 0.00 3.86
1877 1985 3.330720 CCCTCCCCTTTCGCCAGT 61.331 66.667 0.00 0.00 0.00 4.00
1882 1990 0.688087 AGTAGCTCCCTCCCCTTTCG 60.688 60.000 0.00 0.00 0.00 3.46
1883 1991 1.124780 GAGTAGCTCCCTCCCCTTTC 58.875 60.000 0.00 0.00 0.00 2.62
1884 1992 0.719623 AGAGTAGCTCCCTCCCCTTT 59.280 55.000 9.16 0.00 0.00 3.11
1885 1993 0.263468 GAGAGTAGCTCCCTCCCCTT 59.737 60.000 9.16 0.00 37.69 3.95
1886 1994 0.926720 TGAGAGTAGCTCCCTCCCCT 60.927 60.000 9.16 0.00 43.26 4.79
1887 1995 0.757561 GTGAGAGTAGCTCCCTCCCC 60.758 65.000 9.16 3.93 43.26 4.81
1888 1996 1.104577 CGTGAGAGTAGCTCCCTCCC 61.105 65.000 9.16 0.00 43.26 4.30
1889 1997 0.394625 ACGTGAGAGTAGCTCCCTCC 60.395 60.000 9.16 3.38 43.26 4.30
1890 1998 1.941975 GTACGTGAGAGTAGCTCCCTC 59.058 57.143 0.00 0.00 43.26 4.30
1891 1999 1.281287 TGTACGTGAGAGTAGCTCCCT 59.719 52.381 0.00 0.00 43.26 4.20
1892 2000 1.747709 TGTACGTGAGAGTAGCTCCC 58.252 55.000 0.00 0.00 43.26 4.30
1893 2001 2.033550 CCATGTACGTGAGAGTAGCTCC 59.966 54.545 16.87 0.00 43.26 4.70
1894 2002 2.033550 CCCATGTACGTGAGAGTAGCTC 59.966 54.545 16.87 0.00 44.21 4.09
1895 2003 2.025155 CCCATGTACGTGAGAGTAGCT 58.975 52.381 16.87 0.00 0.00 3.32
1896 2004 1.536284 GCCCATGTACGTGAGAGTAGC 60.536 57.143 16.87 5.70 0.00 3.58
1897 2005 1.749063 TGCCCATGTACGTGAGAGTAG 59.251 52.381 16.87 0.00 0.00 2.57
1898 2006 1.842052 TGCCCATGTACGTGAGAGTA 58.158 50.000 16.87 1.93 0.00 2.59
1899 2007 0.973632 TTGCCCATGTACGTGAGAGT 59.026 50.000 16.87 0.00 0.00 3.24
1900 2008 1.935873 CATTGCCCATGTACGTGAGAG 59.064 52.381 16.87 6.06 0.00 3.20
1901 2009 2.011548 GCATTGCCCATGTACGTGAGA 61.012 52.381 16.87 0.00 34.98 3.27
1902 2010 0.378257 GCATTGCCCATGTACGTGAG 59.622 55.000 16.87 4.23 34.98 3.51
1903 2011 1.029408 GGCATTGCCCATGTACGTGA 61.029 55.000 17.28 0.00 44.06 4.35
1904 2012 1.433064 GGCATTGCCCATGTACGTG 59.567 57.895 17.28 8.18 44.06 4.49
1905 2013 3.918544 GGCATTGCCCATGTACGT 58.081 55.556 17.28 0.00 44.06 3.57
1924 2032 0.388520 GCAATCGACCAGGCAAAACC 60.389 55.000 0.00 0.00 39.61 3.27
1925 2033 0.729140 CGCAATCGACCAGGCAAAAC 60.729 55.000 0.00 0.00 38.10 2.43
1926 2034 1.169661 ACGCAATCGACCAGGCAAAA 61.170 50.000 0.00 0.00 39.41 2.44
1927 2035 1.599518 ACGCAATCGACCAGGCAAA 60.600 52.632 0.00 0.00 39.41 3.68
1928 2036 2.031919 ACGCAATCGACCAGGCAA 59.968 55.556 0.00 0.00 39.41 4.52
1929 2037 2.741985 CACGCAATCGACCAGGCA 60.742 61.111 0.00 0.00 39.41 4.75
1930 2038 3.499737 CCACGCAATCGACCAGGC 61.500 66.667 0.00 0.00 39.41 4.85
1931 2039 3.499737 GCCACGCAATCGACCAGG 61.500 66.667 0.00 0.00 39.41 4.45
1932 2040 2.741985 TGCCACGCAATCGACCAG 60.742 61.111 0.00 0.00 34.76 4.00
1933 2041 2.741985 CTGCCACGCAATCGACCA 60.742 61.111 0.00 0.00 38.41 4.02
1934 2042 3.499737 CCTGCCACGCAATCGACC 61.500 66.667 0.00 0.00 38.41 4.79
1935 2043 4.166011 GCCTGCCACGCAATCGAC 62.166 66.667 0.00 0.00 38.41 4.20
1938 2046 3.204827 ATCGCCTGCCACGCAATC 61.205 61.111 0.00 0.00 38.41 2.67
1939 2047 3.511595 CATCGCCTGCCACGCAAT 61.512 61.111 0.00 0.00 38.41 3.56
1943 2051 4.457496 ACTCCATCGCCTGCCACG 62.457 66.667 0.00 0.00 0.00 4.94
1944 2052 2.512515 GACTCCATCGCCTGCCAC 60.513 66.667 0.00 0.00 0.00 5.01
1945 2053 4.147449 CGACTCCATCGCCTGCCA 62.147 66.667 0.00 0.00 45.52 4.92
1953 2061 3.452474 CATCCTGAAACTCGACTCCATC 58.548 50.000 0.00 0.00 0.00 3.51
1954 2062 2.419297 GCATCCTGAAACTCGACTCCAT 60.419 50.000 0.00 0.00 0.00 3.41
1955 2063 1.066858 GCATCCTGAAACTCGACTCCA 60.067 52.381 0.00 0.00 0.00 3.86
1956 2064 1.646189 GCATCCTGAAACTCGACTCC 58.354 55.000 0.00 0.00 0.00 3.85
1957 2065 1.272781 CGCATCCTGAAACTCGACTC 58.727 55.000 0.00 0.00 0.00 3.36
1958 2066 0.603569 ACGCATCCTGAAACTCGACT 59.396 50.000 0.00 0.00 0.00 4.18
1959 2067 1.429463 AACGCATCCTGAAACTCGAC 58.571 50.000 0.00 0.00 0.00 4.20
1960 2068 1.798223 CAAACGCATCCTGAAACTCGA 59.202 47.619 0.00 0.00 0.00 4.04
1961 2069 1.135972 CCAAACGCATCCTGAAACTCG 60.136 52.381 0.00 0.00 0.00 4.18
1962 2070 1.880027 ACCAAACGCATCCTGAAACTC 59.120 47.619 0.00 0.00 0.00 3.01
1963 2071 1.608590 CACCAAACGCATCCTGAAACT 59.391 47.619 0.00 0.00 0.00 2.66
1964 2072 1.336755 ACACCAAACGCATCCTGAAAC 59.663 47.619 0.00 0.00 0.00 2.78
1965 2073 1.606668 GACACCAAACGCATCCTGAAA 59.393 47.619 0.00 0.00 0.00 2.69
1966 2074 1.234821 GACACCAAACGCATCCTGAA 58.765 50.000 0.00 0.00 0.00 3.02
1967 2075 0.948623 CGACACCAAACGCATCCTGA 60.949 55.000 0.00 0.00 0.00 3.86
1968 2076 1.497278 CGACACCAAACGCATCCTG 59.503 57.895 0.00 0.00 0.00 3.86
1969 2077 3.966215 CGACACCAAACGCATCCT 58.034 55.556 0.00 0.00 0.00 3.24
1975 2083 4.368808 CGCCAGCGACACCAAACG 62.369 66.667 6.06 0.00 42.83 3.60
1976 2084 4.025401 CCGCCAGCGACACCAAAC 62.025 66.667 14.67 0.00 42.83 2.93
1993 2101 1.502163 GGTGATATGGAGCACGCAGC 61.502 60.000 0.00 0.00 43.15 5.25
1994 2102 0.179076 TGGTGATATGGAGCACGCAG 60.179 55.000 0.00 0.00 43.15 5.18
1995 2103 0.461870 GTGGTGATATGGAGCACGCA 60.462 55.000 0.00 0.00 43.15 5.24
1996 2104 1.160329 GGTGGTGATATGGAGCACGC 61.160 60.000 7.30 0.00 43.15 5.34
1997 2105 0.465705 AGGTGGTGATATGGAGCACG 59.534 55.000 7.30 0.00 43.15 5.34
1998 2106 2.565841 GAAGGTGGTGATATGGAGCAC 58.434 52.381 5.46 5.46 41.42 4.40
1999 2107 1.490490 GGAAGGTGGTGATATGGAGCA 59.510 52.381 0.00 0.00 0.00 4.26
2000 2108 1.541233 CGGAAGGTGGTGATATGGAGC 60.541 57.143 0.00 0.00 0.00 4.70
2001 2109 1.541233 GCGGAAGGTGGTGATATGGAG 60.541 57.143 0.00 0.00 0.00 3.86
2002 2110 0.468226 GCGGAAGGTGGTGATATGGA 59.532 55.000 0.00 0.00 0.00 3.41
2003 2111 0.535102 GGCGGAAGGTGGTGATATGG 60.535 60.000 0.00 0.00 0.00 2.74
2004 2112 0.469917 AGGCGGAAGGTGGTGATATG 59.530 55.000 0.00 0.00 0.00 1.78
2005 2113 0.759346 GAGGCGGAAGGTGGTGATAT 59.241 55.000 0.00 0.00 0.00 1.63
2006 2114 1.335132 GGAGGCGGAAGGTGGTGATA 61.335 60.000 0.00 0.00 0.00 2.15
2007 2115 2.670148 GGAGGCGGAAGGTGGTGAT 61.670 63.158 0.00 0.00 0.00 3.06
2008 2116 3.319198 GGAGGCGGAAGGTGGTGA 61.319 66.667 0.00 0.00 0.00 4.02
2009 2117 4.760047 CGGAGGCGGAAGGTGGTG 62.760 72.222 0.00 0.00 0.00 4.17
2022 2130 0.590195 CCCTTACGATCGTACCGGAG 59.410 60.000 30.24 23.22 0.00 4.63
2023 2131 1.447317 GCCCTTACGATCGTACCGGA 61.447 60.000 30.49 17.09 0.00 5.14
2024 2132 1.008079 GCCCTTACGATCGTACCGG 60.008 63.158 26.78 25.97 0.00 5.28
2025 2133 0.101040 TTGCCCTTACGATCGTACCG 59.899 55.000 26.78 19.41 0.00 4.02
2026 2134 1.849097 CTTGCCCTTACGATCGTACC 58.151 55.000 26.78 15.39 0.00 3.34
2027 2135 1.202382 AGCTTGCCCTTACGATCGTAC 60.202 52.381 26.78 15.85 0.00 3.67
2028 2136 1.108776 AGCTTGCCCTTACGATCGTA 58.891 50.000 23.54 23.54 0.00 3.43
2029 2137 0.460284 CAGCTTGCCCTTACGATCGT 60.460 55.000 25.94 25.94 0.00 3.73
2030 2138 1.766143 GCAGCTTGCCCTTACGATCG 61.766 60.000 14.88 14.88 37.42 3.69
2031 2139 1.766143 CGCAGCTTGCCCTTACGATC 61.766 60.000 0.00 0.00 41.12 3.69
2032 2140 1.815421 CGCAGCTTGCCCTTACGAT 60.815 57.895 0.00 0.00 41.12 3.73
2033 2141 2.434185 CGCAGCTTGCCCTTACGA 60.434 61.111 0.00 0.00 41.12 3.43
2034 2142 3.499737 CCGCAGCTTGCCCTTACG 61.500 66.667 3.09 0.00 41.12 3.18
2035 2143 1.440145 GATCCGCAGCTTGCCCTTAC 61.440 60.000 3.09 0.00 41.12 2.34
2036 2144 1.153168 GATCCGCAGCTTGCCCTTA 60.153 57.895 3.09 0.00 41.12 2.69
2037 2145 2.439156 GATCCGCAGCTTGCCCTT 60.439 61.111 3.09 0.00 41.12 3.95
2038 2146 4.845580 CGATCCGCAGCTTGCCCT 62.846 66.667 3.09 0.00 41.12 5.19
2040 2148 3.567797 GACGATCCGCAGCTTGCC 61.568 66.667 0.00 0.00 41.12 4.52
2041 2149 3.918220 CGACGATCCGCAGCTTGC 61.918 66.667 0.00 0.00 40.69 4.01
2042 2150 2.202610 TCGACGATCCGCAGCTTG 60.203 61.111 0.00 0.00 0.00 4.01
2043 2151 2.202623 GTCGACGATCCGCAGCTT 60.203 61.111 0.00 0.00 0.00 3.74
2044 2152 4.194720 GGTCGACGATCCGCAGCT 62.195 66.667 9.92 0.00 0.00 4.24
2054 2162 0.942962 AGCTAGTATTCCGGTCGACG 59.057 55.000 9.92 4.95 43.80 5.12
2055 2163 1.945394 TGAGCTAGTATTCCGGTCGAC 59.055 52.381 7.13 7.13 0.00 4.20
2056 2164 2.336945 TGAGCTAGTATTCCGGTCGA 57.663 50.000 0.00 0.00 0.00 4.20
2057 2165 2.922758 GCATGAGCTAGTATTCCGGTCG 60.923 54.545 0.00 0.00 37.91 4.79
2058 2166 2.610727 GGCATGAGCTAGTATTCCGGTC 60.611 54.545 0.00 0.00 41.70 4.79
2059 2167 1.344763 GGCATGAGCTAGTATTCCGGT 59.655 52.381 0.00 0.00 41.70 5.28
2060 2168 1.338200 GGGCATGAGCTAGTATTCCGG 60.338 57.143 0.00 0.00 41.70 5.14
2061 2169 1.620819 AGGGCATGAGCTAGTATTCCG 59.379 52.381 0.00 0.00 41.70 4.30
2062 2170 2.370189 ACAGGGCATGAGCTAGTATTCC 59.630 50.000 5.99 0.00 41.70 3.01
2063 2171 3.181461 ACACAGGGCATGAGCTAGTATTC 60.181 47.826 5.99 0.00 41.70 1.75
2064 2172 2.774234 ACACAGGGCATGAGCTAGTATT 59.226 45.455 5.99 0.00 41.70 1.89
2065 2173 2.366916 GACACAGGGCATGAGCTAGTAT 59.633 50.000 5.99 0.00 41.70 2.12
2066 2174 1.757118 GACACAGGGCATGAGCTAGTA 59.243 52.381 5.99 0.00 41.70 1.82
2067 2175 0.539051 GACACAGGGCATGAGCTAGT 59.461 55.000 5.99 0.00 41.70 2.57
2068 2176 0.829333 AGACACAGGGCATGAGCTAG 59.171 55.000 5.99 0.00 41.70 3.42
2069 2177 2.159179 TAGACACAGGGCATGAGCTA 57.841 50.000 5.99 1.52 41.70 3.32
2070 2178 1.209019 CTTAGACACAGGGCATGAGCT 59.791 52.381 5.99 2.52 41.70 4.09
2071 2179 1.661341 CTTAGACACAGGGCATGAGC 58.339 55.000 5.99 0.00 41.10 4.26
2072 2180 1.065926 TGCTTAGACACAGGGCATGAG 60.066 52.381 5.99 0.00 0.00 2.90
2073 2181 0.983467 TGCTTAGACACAGGGCATGA 59.017 50.000 5.99 0.00 0.00 3.07
2074 2182 2.048444 ATGCTTAGACACAGGGCATG 57.952 50.000 0.00 0.00 41.26 4.06
2075 2183 2.814805 AATGCTTAGACACAGGGCAT 57.185 45.000 0.00 0.00 44.09 4.40
2076 2184 2.224744 TGAAATGCTTAGACACAGGGCA 60.225 45.455 0.00 0.00 37.32 5.36
2077 2185 2.162408 GTGAAATGCTTAGACACAGGGC 59.838 50.000 0.00 0.00 0.00 5.19
2078 2186 2.416547 CGTGAAATGCTTAGACACAGGG 59.583 50.000 0.00 0.00 0.00 4.45
2079 2187 3.067106 ACGTGAAATGCTTAGACACAGG 58.933 45.455 0.00 0.00 0.00 4.00
2080 2188 3.990469 AGACGTGAAATGCTTAGACACAG 59.010 43.478 0.00 0.00 0.00 3.66
2081 2189 3.987868 GAGACGTGAAATGCTTAGACACA 59.012 43.478 0.00 0.00 0.00 3.72
2082 2190 4.238514 AGAGACGTGAAATGCTTAGACAC 58.761 43.478 0.00 0.00 0.00 3.67
2083 2191 4.486090 GAGAGACGTGAAATGCTTAGACA 58.514 43.478 0.00 0.00 0.00 3.41
2084 2192 3.860536 GGAGAGACGTGAAATGCTTAGAC 59.139 47.826 0.00 0.00 0.00 2.59
2085 2193 3.764434 AGGAGAGACGTGAAATGCTTAGA 59.236 43.478 0.00 0.00 0.00 2.10
2086 2194 3.862267 CAGGAGAGACGTGAAATGCTTAG 59.138 47.826 0.00 0.00 36.62 2.18
2087 2195 3.258372 ACAGGAGAGACGTGAAATGCTTA 59.742 43.478 0.00 0.00 37.74 3.09
2088 2196 2.037772 ACAGGAGAGACGTGAAATGCTT 59.962 45.455 0.00 0.00 37.74 3.91
2089 2197 1.620819 ACAGGAGAGACGTGAAATGCT 59.379 47.619 0.00 0.00 37.74 3.79
2090 2198 1.728971 CACAGGAGAGACGTGAAATGC 59.271 52.381 0.00 0.00 37.74 3.56
2091 2199 2.341257 CCACAGGAGAGACGTGAAATG 58.659 52.381 0.00 0.00 37.74 2.32
2092 2200 1.338200 GCCACAGGAGAGACGTGAAAT 60.338 52.381 0.00 0.00 37.74 2.17
2093 2201 0.033504 GCCACAGGAGAGACGTGAAA 59.966 55.000 0.00 0.00 37.74 2.69
2094 2202 1.666011 GCCACAGGAGAGACGTGAA 59.334 57.895 0.00 0.00 37.74 3.18
2095 2203 2.626780 CGCCACAGGAGAGACGTGA 61.627 63.158 0.00 0.00 37.74 4.35
2096 2204 2.126307 CGCCACAGGAGAGACGTG 60.126 66.667 0.00 0.00 39.84 4.49
2097 2205 1.745320 AAACGCCACAGGAGAGACGT 61.745 55.000 0.00 0.00 34.85 4.34
2098 2206 0.600255 AAAACGCCACAGGAGAGACG 60.600 55.000 0.00 0.00 0.00 4.18
2099 2207 0.868406 CAAAACGCCACAGGAGAGAC 59.132 55.000 0.00 0.00 0.00 3.36
2100 2208 0.250295 CCAAAACGCCACAGGAGAGA 60.250 55.000 0.00 0.00 0.00 3.10
2101 2209 0.250295 TCCAAAACGCCACAGGAGAG 60.250 55.000 0.00 0.00 0.00 3.20
2102 2210 0.400213 ATCCAAAACGCCACAGGAGA 59.600 50.000 0.00 0.00 0.00 3.71
2103 2211 0.523072 CATCCAAAACGCCACAGGAG 59.477 55.000 0.00 0.00 0.00 3.69
2104 2212 0.179004 ACATCCAAAACGCCACAGGA 60.179 50.000 0.00 0.00 0.00 3.86
2105 2213 1.468520 CTACATCCAAAACGCCACAGG 59.531 52.381 0.00 0.00 0.00 4.00
2106 2214 1.135689 GCTACATCCAAAACGCCACAG 60.136 52.381 0.00 0.00 0.00 3.66
2107 2215 0.878416 GCTACATCCAAAACGCCACA 59.122 50.000 0.00 0.00 0.00 4.17
2108 2216 0.179200 CGCTACATCCAAAACGCCAC 60.179 55.000 0.00 0.00 0.00 5.01
2109 2217 1.917782 GCGCTACATCCAAAACGCCA 61.918 55.000 0.00 0.00 40.43 5.69
2110 2218 1.226295 GCGCTACATCCAAAACGCC 60.226 57.895 0.00 0.00 40.43 5.68
2111 2219 0.793104 GTGCGCTACATCCAAAACGC 60.793 55.000 9.73 0.00 46.05 4.84
2112 2220 0.796312 AGTGCGCTACATCCAAAACG 59.204 50.000 9.73 0.00 0.00 3.60
2113 2221 1.729149 GCAGTGCGCTACATCCAAAAC 60.729 52.381 9.73 0.00 37.77 2.43
2114 2222 0.521291 GCAGTGCGCTACATCCAAAA 59.479 50.000 9.73 0.00 37.77 2.44
2115 2223 2.170738 GCAGTGCGCTACATCCAAA 58.829 52.632 9.73 0.00 37.77 3.28
2116 2224 3.889227 GCAGTGCGCTACATCCAA 58.111 55.556 9.73 0.00 37.77 3.53
2125 2233 3.782244 CCTGTTCGAGCAGTGCGC 61.782 66.667 25.01 9.50 42.91 6.09
2126 2234 1.891060 GAACCTGTTCGAGCAGTGCG 61.891 60.000 25.01 14.02 34.84 5.34
2127 2235 0.601311 AGAACCTGTTCGAGCAGTGC 60.601 55.000 25.01 7.13 43.97 4.40
2128 2236 1.143305 CAGAACCTGTTCGAGCAGTG 58.857 55.000 25.01 18.77 43.97 3.66
2129 2237 0.034059 CCAGAACCTGTTCGAGCAGT 59.966 55.000 25.01 10.06 43.97 4.40
2130 2238 0.318441 TCCAGAACCTGTTCGAGCAG 59.682 55.000 21.14 21.14 43.97 4.24
2131 2239 0.318441 CTCCAGAACCTGTTCGAGCA 59.682 55.000 0.88 0.88 43.97 4.26
2132 2240 0.318762 ACTCCAGAACCTGTTCGAGC 59.681 55.000 12.14 0.00 43.97 5.03
2133 2241 3.936372 TTACTCCAGAACCTGTTCGAG 57.064 47.619 11.17 11.17 43.97 4.04
2134 2242 3.243975 GGTTTACTCCAGAACCTGTTCGA 60.244 47.826 4.49 0.00 43.97 3.71
2135 2243 3.064931 GGTTTACTCCAGAACCTGTTCG 58.935 50.000 4.49 0.76 43.97 3.95
2136 2244 3.181448 TGGGTTTACTCCAGAACCTGTTC 60.181 47.826 1.75 1.75 43.78 3.18
2137 2245 2.781174 TGGGTTTACTCCAGAACCTGTT 59.219 45.455 5.37 0.00 43.78 3.16
2138 2246 2.414612 TGGGTTTACTCCAGAACCTGT 58.585 47.619 5.37 0.00 43.78 4.00
2139 2247 3.264450 AGATGGGTTTACTCCAGAACCTG 59.736 47.826 5.37 0.00 43.78 4.00
2140 2248 3.264450 CAGATGGGTTTACTCCAGAACCT 59.736 47.826 5.37 0.00 43.78 3.50
2141 2249 3.610911 CAGATGGGTTTACTCCAGAACC 58.389 50.000 0.00 0.00 43.61 3.62
2142 2250 3.010420 GCAGATGGGTTTACTCCAGAAC 58.990 50.000 0.00 0.00 37.75 3.01
2143 2251 2.912956 AGCAGATGGGTTTACTCCAGAA 59.087 45.455 0.00 0.00 37.75 3.02
2144 2252 2.551270 AGCAGATGGGTTTACTCCAGA 58.449 47.619 0.00 0.00 37.75 3.86
2145 2253 3.356529 AAGCAGATGGGTTTACTCCAG 57.643 47.619 0.00 0.00 37.75 3.86
2146 2254 5.450818 AATAAGCAGATGGGTTTACTCCA 57.549 39.130 0.00 0.00 38.39 3.86
2147 2255 6.775594 AAAATAAGCAGATGGGTTTACTCC 57.224 37.500 0.00 0.00 38.39 3.85
2148 2256 9.952188 GAATAAAATAAGCAGATGGGTTTACTC 57.048 33.333 0.00 0.00 38.39 2.59
2205 2315 1.262950 TGCACGGCGTAATAATGATGC 59.737 47.619 14.22 9.49 0.00 3.91
2223 2333 2.828095 TGTGGGTGTGCTGTGTGC 60.828 61.111 0.00 0.00 43.25 4.57
2224 2334 2.480610 GGTGTGGGTGTGCTGTGTG 61.481 63.158 0.00 0.00 0.00 3.82
2225 2335 2.124320 GGTGTGGGTGTGCTGTGT 60.124 61.111 0.00 0.00 0.00 3.72
2226 2336 3.279116 CGGTGTGGGTGTGCTGTG 61.279 66.667 0.00 0.00 0.00 3.66
2341 2451 0.806868 TTCGACTGTGCCGTACTAGG 59.193 55.000 0.00 0.00 0.00 3.02
2354 2464 2.492484 CACCCAGCTAGTAAGTTCGACT 59.508 50.000 0.00 0.00 0.00 4.18
2390 2501 1.587054 CACGCTCTCCGACCTCTTT 59.413 57.895 0.00 0.00 41.02 2.52
2393 2504 3.827898 CCCACGCTCTCCGACCTC 61.828 72.222 0.00 0.00 41.02 3.85
2648 2759 2.690497 CGAGATCAGCTACTCCCTCAAA 59.310 50.000 0.00 0.00 0.00 2.69
2780 2891 1.507140 AGATATCGGGGGTGCAGAAA 58.493 50.000 0.00 0.00 0.00 2.52
2848 2959 0.247934 CGTCGTTCGATCCGTCATCA 60.248 55.000 0.00 0.00 42.86 3.07
2849 2960 0.027194 TCGTCGTTCGATCCGTCATC 59.973 55.000 0.00 0.00 44.01 2.92
2850 2961 2.092374 TCGTCGTTCGATCCGTCAT 58.908 52.632 0.00 0.00 44.01 3.06
2851 2962 3.565050 TCGTCGTTCGATCCGTCA 58.435 55.556 0.00 0.00 44.01 4.35
2871 2985 0.930310 CACCACAACTCACACGACAG 59.070 55.000 0.00 0.00 0.00 3.51
2873 2987 0.928229 GTCACCACAACTCACACGAC 59.072 55.000 0.00 0.00 0.00 4.34
2911 3025 2.639751 CAGCGCGGCATTAAACTAATC 58.360 47.619 8.83 0.00 0.00 1.75
2934 3048 1.202879 ACGGAGAAAACCCATCAAGCA 60.203 47.619 0.00 0.00 0.00 3.91
2978 3094 1.219664 CCGCGTAAACCCATCCTCA 59.780 57.895 4.92 0.00 0.00 3.86
2983 3099 4.085204 TCCGCCGCGTAAACCCAT 62.085 61.111 12.58 0.00 0.00 4.00
2998 3114 2.442188 GCATTCCGTCGACGTGTCC 61.442 63.158 33.49 15.54 37.74 4.02
3092 3208 1.421410 CTCCGTGCTTTCGATTCGGG 61.421 60.000 6.18 0.00 41.27 5.14
3114 3230 2.852495 ATCGTACTGCACAAGCCGGG 62.852 60.000 2.18 0.00 41.13 5.73
3118 3234 2.607187 ACACTATCGTACTGCACAAGC 58.393 47.619 0.00 0.00 42.57 4.01
3130 3246 0.176219 TGCCCGGGTTTACACTATCG 59.824 55.000 24.63 0.00 0.00 2.92
3133 3249 2.306512 AGAAATGCCCGGGTTTACACTA 59.693 45.455 24.63 0.00 0.00 2.74
3134 3250 1.074889 AGAAATGCCCGGGTTTACACT 59.925 47.619 24.63 12.05 0.00 3.55
3135 3251 1.471287 GAGAAATGCCCGGGTTTACAC 59.529 52.381 24.63 9.85 0.00 2.90
3136 3252 1.828979 GAGAAATGCCCGGGTTTACA 58.171 50.000 24.63 12.19 0.00 2.41
3137 3253 0.730840 CGAGAAATGCCCGGGTTTAC 59.269 55.000 24.63 11.82 0.00 2.01
3138 3254 0.393267 CCGAGAAATGCCCGGGTTTA 60.393 55.000 24.63 9.73 39.59 2.01
3139 3255 1.677633 CCGAGAAATGCCCGGGTTT 60.678 57.895 24.63 16.11 39.59 3.27
3140 3256 2.045340 CCGAGAAATGCCCGGGTT 60.045 61.111 24.63 8.77 39.59 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.