Multiple sequence alignment - TraesCS3A01G149800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G149800 chr3A 100.000 5362 0 0 1 5362 135967417 135972778 0.000000e+00 9902
1 TraesCS3A01G149800 chr3A 90.826 109 10 0 4053 4161 466795834 466795726 4.330000e-31 147
2 TraesCS3A01G149800 chr3D 94.110 3277 109 36 717 3973 126216143 126219355 0.000000e+00 4905
3 TraesCS3A01G149800 chr3D 92.671 805 30 7 4033 4809 126219545 126220348 0.000000e+00 1133
4 TraesCS3A01G149800 chr3D 88.623 334 29 6 4824 5153 554150112 554149784 1.080000e-106 398
5 TraesCS3A01G149800 chr3D 94.915 236 8 2 3809 4044 126219356 126219587 3.050000e-97 366
6 TraesCS3A01G149800 chr3D 94.898 98 5 0 5150 5247 126220374 126220471 2.590000e-33 154
7 TraesCS3A01G149800 chr3D 89.796 98 8 1 3947 4044 335673938 335673843 2.030000e-24 124
8 TraesCS3A01G149800 chr3B 95.591 1905 57 12 881 2768 180274516 180276410 0.000000e+00 3027
9 TraesCS3A01G149800 chr3B 94.388 1176 26 11 2875 4044 180276408 180277549 0.000000e+00 1770
10 TraesCS3A01G149800 chr3B 95.833 696 15 4 4033 4716 180277508 180278201 0.000000e+00 1112
11 TraesCS3A01G149800 chr3B 88.965 734 63 8 1 718 708392030 708392761 0.000000e+00 891
12 TraesCS3A01G149800 chr3B 87.667 300 31 6 425 719 809837326 809837028 1.430000e-90 344
13 TraesCS3A01G149800 chr3B 92.116 241 17 2 5124 5362 180278534 180278774 6.650000e-89 339
14 TraesCS3A01G149800 chr3B 86.218 312 35 7 4828 5134 545070294 545070602 1.110000e-86 331
15 TraesCS3A01G149800 chr3B 92.568 148 5 3 717 862 180274389 180274532 1.960000e-49 207
16 TraesCS3A01G149800 chr7B 88.904 730 66 7 3 718 498599040 498599768 0.000000e+00 885
17 TraesCS3A01G149800 chr7B 88.276 725 63 15 13 718 657536281 657535560 0.000000e+00 848
18 TraesCS3A01G149800 chr7B 85.075 335 40 8 4828 5156 548114016 548113686 3.090000e-87 333
19 TraesCS3A01G149800 chr7B 89.796 98 8 1 3947 4044 254836628 254836723 2.030000e-24 124
20 TraesCS3A01G149800 chr5D 89.489 685 58 5 1 673 464702021 464702703 0.000000e+00 854
21 TraesCS3A01G149800 chr5D 87.613 331 36 4 4828 5156 27095356 27095683 3.920000e-101 379
22 TraesCS3A01G149800 chr5D 91.892 111 9 0 4051 4161 251307756 251307866 7.190000e-34 156
23 TraesCS3A01G149800 chr1D 87.891 735 70 12 1 719 329506574 329507305 0.000000e+00 846
24 TraesCS3A01G149800 chr1D 86.648 719 87 8 4 717 10288016 10287302 0.000000e+00 787
25 TraesCS3A01G149800 chr1D 88.982 599 53 5 1 587 50712423 50711826 0.000000e+00 728
26 TraesCS3A01G149800 chr1D 84.786 723 95 11 1 718 454496203 454495491 0.000000e+00 712
27 TraesCS3A01G149800 chr1D 92.593 108 8 0 4054 4161 268963385 268963492 7.190000e-34 156
28 TraesCS3A01G149800 chr1D 86.822 129 16 1 4034 4161 260320846 260320974 5.600000e-30 143
29 TraesCS3A01G149800 chr5B 87.040 733 78 12 2 719 575530532 575531262 0.000000e+00 811
30 TraesCS3A01G149800 chr5B 81.402 371 59 10 4824 5188 13089314 13088948 1.460000e-75 294
31 TraesCS3A01G149800 chr2B 85.931 725 90 11 1 718 118289504 118290223 0.000000e+00 763
32 TraesCS3A01G149800 chr2B 91.743 109 9 0 4053 4161 88430035 88429927 9.300000e-33 152
33 TraesCS3A01G149800 chr1B 84.688 738 89 15 1 719 670974655 670975387 0.000000e+00 715
34 TraesCS3A01G149800 chr2A 85.794 359 39 11 371 719 676450355 676450711 2.360000e-98 370
35 TraesCS3A01G149800 chr2A 91.579 95 6 1 3950 4044 729163521 729163613 4.360000e-26 130
36 TraesCS3A01G149800 chr2A 89.796 98 8 1 3947 4044 578388666 578388571 2.030000e-24 124
37 TraesCS3A01G149800 chr6D 84.751 341 39 8 4828 5160 41542345 41542680 4.000000e-86 329
38 TraesCS3A01G149800 chr4B 85.358 321 41 5 4828 5146 64781555 64781239 1.440000e-85 327
39 TraesCS3A01G149800 chr4B 90.816 98 7 1 3947 4044 427508212 427508307 4.360000e-26 130
40 TraesCS3A01G149800 chr4B 93.878 49 3 0 2313 2361 209080184 209080232 2.070000e-09 75
41 TraesCS3A01G149800 chr7D 86.230 305 35 7 4852 5152 265173601 265173300 1.860000e-84 324
42 TraesCS3A01G149800 chr2D 83.483 333 48 5 4825 5152 445189679 445190009 2.430000e-78 303
43 TraesCS3A01G149800 chr2D 90.741 108 10 0 4054 4161 55758907 55758800 1.560000e-30 145
44 TraesCS3A01G149800 chr2D 90.816 98 7 1 3947 4044 388833848 388833753 4.360000e-26 130
45 TraesCS3A01G149800 chr4D 90.435 115 10 1 4051 4165 190482572 190482459 3.350000e-32 150
46 TraesCS3A01G149800 chr7A 90.816 98 7 1 3947 4044 310591150 310591245 4.360000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G149800 chr3A 135967417 135972778 5361 False 9902.0 9902 100.0000 1 5362 1 chr3A.!!$F1 5361
1 TraesCS3A01G149800 chr3D 126216143 126220471 4328 False 1639.5 4905 94.1485 717 5247 4 chr3D.!!$F1 4530
2 TraesCS3A01G149800 chr3B 180274389 180278774 4385 False 1291.0 3027 94.0992 717 5362 5 chr3B.!!$F3 4645
3 TraesCS3A01G149800 chr3B 708392030 708392761 731 False 891.0 891 88.9650 1 718 1 chr3B.!!$F2 717
4 TraesCS3A01G149800 chr7B 498599040 498599768 728 False 885.0 885 88.9040 3 718 1 chr7B.!!$F2 715
5 TraesCS3A01G149800 chr7B 657535560 657536281 721 True 848.0 848 88.2760 13 718 1 chr7B.!!$R2 705
6 TraesCS3A01G149800 chr5D 464702021 464702703 682 False 854.0 854 89.4890 1 673 1 chr5D.!!$F3 672
7 TraesCS3A01G149800 chr1D 329506574 329507305 731 False 846.0 846 87.8910 1 719 1 chr1D.!!$F3 718
8 TraesCS3A01G149800 chr1D 10287302 10288016 714 True 787.0 787 86.6480 4 717 1 chr1D.!!$R1 713
9 TraesCS3A01G149800 chr1D 50711826 50712423 597 True 728.0 728 88.9820 1 587 1 chr1D.!!$R2 586
10 TraesCS3A01G149800 chr1D 454495491 454496203 712 True 712.0 712 84.7860 1 718 1 chr1D.!!$R3 717
11 TraesCS3A01G149800 chr5B 575530532 575531262 730 False 811.0 811 87.0400 2 719 1 chr5B.!!$F1 717
12 TraesCS3A01G149800 chr2B 118289504 118290223 719 False 763.0 763 85.9310 1 718 1 chr2B.!!$F1 717
13 TraesCS3A01G149800 chr1B 670974655 670975387 732 False 715.0 715 84.6880 1 719 1 chr1B.!!$F1 718

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
405 411 0.038892 GCGTCTTAGTCGTGTTGGGA 60.039 55.0 0.68 0.00 0.00 4.37 F
2356 2403 0.031994 GCCCAACGAAACATGCAGTT 59.968 50.0 0.00 0.00 43.89 3.16 F
4052 4267 0.249120 TATCCACGTGCAGGGAAGTG 59.751 55.0 10.91 5.42 36.62 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2358 2405 0.037232 GGCACGGCACTCTAAAGTCT 60.037 55.0 0.00 0.00 31.71 3.24 R
4056 4271 0.391263 GGCACGTGGCTAGCTAACTT 60.391 55.0 32.54 4.53 44.01 2.66 R
5303 5718 0.833949 TGTGTTGGTGTGCCTGTCTA 59.166 50.0 0.00 0.00 35.27 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.769617 CACACGCGTGGATCGTTC 59.230 61.111 39.21 0.00 39.64 3.95
56 57 6.325352 TCCCTTGTAGTCTAGGTTTTTAGGA 58.675 40.000 0.00 0.00 35.38 2.94
109 114 5.886992 TGACGACGCTGAATAAAGATTCTA 58.113 37.500 0.00 0.00 41.87 2.10
297 303 1.007721 AGGTAGTCCAGGAGCAGATGT 59.992 52.381 0.00 0.00 35.89 3.06
304 310 2.103771 TCCAGGAGCAGATGTAGATTGC 59.896 50.000 0.00 0.00 38.09 3.56
342 348 1.967779 TCTGGAAGATGGAACGTGTGA 59.032 47.619 0.00 0.00 38.67 3.58
353 359 1.944024 GAACGTGTGATGGGTTTGTGA 59.056 47.619 0.00 0.00 0.00 3.58
400 406 0.109873 CTTCGGCGTCTTAGTCGTGT 60.110 55.000 6.85 0.00 40.52 4.49
405 411 0.038892 GCGTCTTAGTCGTGTTGGGA 60.039 55.000 0.68 0.00 0.00 4.37
408 414 2.352421 CGTCTTAGTCGTGTTGGGATGT 60.352 50.000 0.00 0.00 0.00 3.06
413 419 1.691976 AGTCGTGTTGGGATGTCAGAA 59.308 47.619 0.00 0.00 0.00 3.02
455 461 2.668550 GTGTTGCCCCGGTCTGAC 60.669 66.667 0.00 0.00 0.00 3.51
483 489 2.235016 ACGGCAATGGCTTCACTTTTA 58.765 42.857 5.02 0.00 40.87 1.52
655 676 7.862372 GCTATCTTTTCAGTTTTGTCATGTTGA 59.138 33.333 0.00 0.00 0.00 3.18
744 767 6.088085 CGTGGTAAAAGCAATCTCAAATTGAC 59.912 38.462 2.07 0.00 0.00 3.18
745 768 6.922957 GTGGTAAAAGCAATCTCAAATTGACA 59.077 34.615 2.07 0.00 0.00 3.58
800 825 9.247861 GATTAGTGATCATTAGGGGCAATTTAT 57.752 33.333 0.00 0.00 34.75 1.40
842 867 8.706322 ATTAAAGTCCAGTGACAAAATTAGGT 57.294 30.769 0.00 0.00 44.33 3.08
843 868 9.802039 ATTAAAGTCCAGTGACAAAATTAGGTA 57.198 29.630 0.00 0.00 44.33 3.08
844 869 9.802039 TTAAAGTCCAGTGACAAAATTAGGTAT 57.198 29.630 0.00 0.00 44.33 2.73
845 870 7.687941 AAGTCCAGTGACAAAATTAGGTATG 57.312 36.000 0.00 0.00 44.33 2.39
846 871 7.016153 AGTCCAGTGACAAAATTAGGTATGA 57.984 36.000 0.00 0.00 44.33 2.15
847 872 7.106239 AGTCCAGTGACAAAATTAGGTATGAG 58.894 38.462 0.00 0.00 44.33 2.90
848 873 5.880332 TCCAGTGACAAAATTAGGTATGAGC 59.120 40.000 0.00 0.00 0.00 4.26
849 874 5.066505 CCAGTGACAAAATTAGGTATGAGCC 59.933 44.000 0.00 0.00 0.00 4.70
850 875 5.647658 CAGTGACAAAATTAGGTATGAGCCA 59.352 40.000 0.00 0.00 0.00 4.75
851 876 6.319658 CAGTGACAAAATTAGGTATGAGCCAT 59.680 38.462 0.00 0.00 0.00 4.40
852 877 7.498900 CAGTGACAAAATTAGGTATGAGCCATA 59.501 37.037 0.00 0.00 0.00 2.74
853 878 8.052748 AGTGACAAAATTAGGTATGAGCCATAA 58.947 33.333 0.00 0.00 0.00 1.90
854 879 8.345565 GTGACAAAATTAGGTATGAGCCATAAG 58.654 37.037 0.00 0.00 0.00 1.73
855 880 8.052748 TGACAAAATTAGGTATGAGCCATAAGT 58.947 33.333 0.00 0.00 0.00 2.24
856 881 8.823220 ACAAAATTAGGTATGAGCCATAAGTT 57.177 30.769 0.00 0.00 0.00 2.66
857 882 9.255029 ACAAAATTAGGTATGAGCCATAAGTTT 57.745 29.630 0.00 0.00 0.00 2.66
862 887 9.780186 ATTAGGTATGAGCCATAAGTTTTACTC 57.220 33.333 0.00 0.00 0.00 2.59
863 888 7.439108 AGGTATGAGCCATAAGTTTTACTCT 57.561 36.000 0.00 0.00 0.00 3.24
864 889 7.862675 AGGTATGAGCCATAAGTTTTACTCTT 58.137 34.615 0.00 0.00 0.00 2.85
865 890 8.329502 AGGTATGAGCCATAAGTTTTACTCTTT 58.670 33.333 0.00 0.00 0.00 2.52
866 891 8.957466 GGTATGAGCCATAAGTTTTACTCTTTT 58.043 33.333 0.00 0.00 0.00 2.27
904 929 3.998341 GCCATAAGTTTTACTGACCGTGA 59.002 43.478 0.00 0.00 0.00 4.35
925 961 8.440833 CCGTGAGTACATTTTACTAAAGAAAGG 58.559 37.037 0.00 0.00 0.00 3.11
1054 1096 1.323271 GGACGAGCAGGAGATGGACA 61.323 60.000 0.00 0.00 0.00 4.02
1163 1205 1.664873 CTCGTCGACCAGGTCTGATA 58.335 55.000 17.95 8.17 0.00 2.15
1182 1224 2.492090 CTCCACGGCCTCTCTTCG 59.508 66.667 0.00 0.00 0.00 3.79
1189 1231 2.579738 GCCTCTCTTCGACCACCC 59.420 66.667 0.00 0.00 0.00 4.61
1232 1274 5.858381 ACCTGATGCGATTTAGTGATGTAT 58.142 37.500 0.00 0.00 0.00 2.29
1234 1276 6.203530 ACCTGATGCGATTTAGTGATGTATTG 59.796 38.462 0.00 0.00 0.00 1.90
1235 1277 5.989249 TGATGCGATTTAGTGATGTATTGC 58.011 37.500 0.00 0.00 0.00 3.56
1236 1278 4.451379 TGCGATTTAGTGATGTATTGCG 57.549 40.909 0.00 0.00 31.43 4.85
1259 1302 0.327924 TCCGATGTTTGGAGCATGGT 59.672 50.000 0.00 0.00 0.00 3.55
1269 1312 1.257750 GGAGCATGGTTGGGGTTTCC 61.258 60.000 0.00 0.00 0.00 3.13
1286 1329 5.128919 GGTTTCCTGATGCAGATTCACTAT 58.871 41.667 0.00 0.00 32.44 2.12
1294 1337 6.051074 TGATGCAGATTCACTATGATTCGTT 58.949 36.000 0.00 0.00 33.39 3.85
1306 1349 6.250315 CACTATGATTCGTTGATCTAGATCGC 59.750 42.308 24.27 18.67 40.63 4.58
1368 1411 8.525290 AGCTTTTACCATTAGATGTTGCTAAT 57.475 30.769 0.00 0.00 40.69 1.73
1457 1500 9.454859 AATTCTCCAGTTGATCTTAACTTTAGG 57.545 33.333 0.00 0.00 38.78 2.69
1552 1596 4.451096 CAGGTGATAACGTACTTGCACTTT 59.549 41.667 0.00 0.00 0.00 2.66
1553 1597 5.049680 CAGGTGATAACGTACTTGCACTTTT 60.050 40.000 0.00 0.00 0.00 2.27
1742 1786 2.487762 CGCCTTTCCAGCAGAATTTACA 59.512 45.455 0.00 0.00 33.44 2.41
1830 1874 7.890655 GCCTATGACCTTTATAATCCCAAGATT 59.109 37.037 0.00 0.00 44.95 2.40
2023 2069 7.771183 ACTTCTTTTTGACATGTTTCTTAGCA 58.229 30.769 0.00 0.00 0.00 3.49
2076 2122 8.713708 TTTCTTTTGTTATCCAAGGTTCCATA 57.286 30.769 0.00 0.00 33.75 2.74
2087 2133 6.472887 TCCAAGGTTCCATACAGAACTAAAG 58.527 40.000 4.58 0.00 44.56 1.85
2088 2134 5.648092 CCAAGGTTCCATACAGAACTAAAGG 59.352 44.000 4.58 0.00 44.56 3.11
2101 2147 8.465273 ACAGAACTAAAGGCATACTTTCTTTT 57.535 30.769 0.00 0.00 46.20 2.27
2226 2272 2.508436 TGCTTTGCAGGTCGGTCA 59.492 55.556 0.00 0.00 33.32 4.02
2355 2402 1.659794 GCCCAACGAAACATGCAGT 59.340 52.632 0.00 0.00 0.00 4.40
2356 2403 0.031994 GCCCAACGAAACATGCAGTT 59.968 50.000 0.00 0.00 43.89 3.16
2382 2429 1.476845 TTAGAGTGCCGTGCCAAGGA 61.477 55.000 0.00 0.00 0.00 3.36
2439 2486 7.334671 GCCAATATATACTAAAGTGGAAGGCTC 59.665 40.741 2.18 0.00 32.49 4.70
2522 2570 6.814043 TGATGATGTTTCCATTGTCAAAACA 58.186 32.000 3.64 3.64 44.36 2.83
2530 2578 8.449397 TGTTTCCATTGTCAAAACAGAAAAATG 58.551 29.630 0.00 0.00 37.82 2.32
2648 2696 8.361139 ACGAGAATCTGTTATGGGAAGTATAAG 58.639 37.037 0.00 0.00 0.00 1.73
2652 2700 7.618019 ATCTGTTATGGGAAGTATAAGAGCA 57.382 36.000 0.00 0.00 33.68 4.26
2769 2819 8.545420 TGAAACAACTTTCTTAGTCGTCATTAC 58.455 33.333 0.00 0.00 37.30 1.89
3150 3200 9.651913 ATGACAACAGTTTGTAAGTTTCATTTT 57.348 25.926 0.00 0.00 46.43 1.82
3212 3268 8.685838 TTCCAAGTAACAGCAACTTAGTATTT 57.314 30.769 0.00 0.00 35.44 1.40
3234 3290 3.517901 TCGGGTGTCAATTCCTTCATAGT 59.482 43.478 0.00 0.00 0.00 2.12
3260 3316 7.630242 TCTTGTGTCTATTTCATTTGATCCC 57.370 36.000 0.00 0.00 0.00 3.85
3383 3439 7.251704 CAAGTCCTTGCCAATATGTAACTAG 57.748 40.000 0.00 0.00 33.45 2.57
3418 3474 2.517875 CACATAGCCAGCCAGCCC 60.518 66.667 0.00 0.00 0.00 5.19
3622 3678 5.086104 TGGAAGCATAGAAGTAGGTTCAC 57.914 43.478 0.00 0.00 40.47 3.18
3646 3702 1.834188 ATTTTCCCGTTACTGCCTGG 58.166 50.000 0.00 0.00 0.00 4.45
3663 3719 3.243636 GCCTGGAGATATTTGGCATGTTG 60.244 47.826 0.00 0.00 42.79 3.33
3664 3720 3.319972 CCTGGAGATATTTGGCATGTTGG 59.680 47.826 0.00 0.00 0.00 3.77
3665 3721 3.298619 TGGAGATATTTGGCATGTTGGG 58.701 45.455 0.00 0.00 0.00 4.12
3666 3722 3.053019 TGGAGATATTTGGCATGTTGGGA 60.053 43.478 0.00 0.00 0.00 4.37
3667 3723 3.960102 GGAGATATTTGGCATGTTGGGAA 59.040 43.478 0.00 0.00 0.00 3.97
3668 3724 4.038402 GGAGATATTTGGCATGTTGGGAAG 59.962 45.833 0.00 0.00 0.00 3.46
3669 3725 4.613437 AGATATTTGGCATGTTGGGAAGT 58.387 39.130 0.00 0.00 0.00 3.01
3670 3726 5.765510 AGATATTTGGCATGTTGGGAAGTA 58.234 37.500 0.00 0.00 0.00 2.24
3671 3727 6.376248 AGATATTTGGCATGTTGGGAAGTAT 58.624 36.000 0.00 0.00 0.00 2.12
3672 3728 4.741321 ATTTGGCATGTTGGGAAGTATG 57.259 40.909 0.00 0.00 0.00 2.39
3673 3729 1.473258 TGGCATGTTGGGAAGTATGC 58.527 50.000 0.00 0.00 43.81 3.14
3674 3730 1.005805 TGGCATGTTGGGAAGTATGCT 59.994 47.619 0.00 0.00 43.96 3.79
3675 3731 2.240921 TGGCATGTTGGGAAGTATGCTA 59.759 45.455 0.00 0.00 43.96 3.49
3676 3732 3.117550 TGGCATGTTGGGAAGTATGCTAT 60.118 43.478 0.00 0.00 43.96 2.97
3677 3733 3.891366 GGCATGTTGGGAAGTATGCTATT 59.109 43.478 0.00 0.00 43.96 1.73
3678 3734 5.070001 GGCATGTTGGGAAGTATGCTATTA 58.930 41.667 0.00 0.00 43.96 0.98
3679 3735 5.711976 GGCATGTTGGGAAGTATGCTATTAT 59.288 40.000 0.00 0.00 43.96 1.28
3680 3736 6.349611 GGCATGTTGGGAAGTATGCTATTATG 60.350 42.308 0.00 0.00 43.96 1.90
3681 3737 6.207417 GCATGTTGGGAAGTATGCTATTATGT 59.793 38.462 0.00 0.00 41.89 2.29
3682 3738 7.573843 GCATGTTGGGAAGTATGCTATTATGTC 60.574 40.741 0.00 0.00 41.89 3.06
3731 3787 7.310664 CCGTTACTGCCTCGAGATATTTATTA 58.689 38.462 15.71 0.00 0.00 0.98
3761 3817 4.419522 AGTACGCTATTTTGCTTGTTGG 57.580 40.909 0.00 0.00 0.00 3.77
3922 3978 5.995897 ACCTCTGACGCTTAATAAACAAGTT 59.004 36.000 0.00 0.00 0.00 2.66
4044 4259 2.418197 GGAAGTTAGCTATCCACGTGCA 60.418 50.000 10.91 0.00 33.30 4.57
4045 4260 2.586258 AGTTAGCTATCCACGTGCAG 57.414 50.000 10.91 7.83 0.00 4.41
4046 4261 1.137086 AGTTAGCTATCCACGTGCAGG 59.863 52.381 10.91 4.53 0.00 4.85
4047 4262 0.464036 TTAGCTATCCACGTGCAGGG 59.536 55.000 10.91 1.77 0.00 4.45
4048 4263 0.396556 TAGCTATCCACGTGCAGGGA 60.397 55.000 10.91 7.74 37.64 4.20
4049 4264 1.220749 GCTATCCACGTGCAGGGAA 59.779 57.895 10.91 0.00 36.62 3.97
4050 4265 0.811616 GCTATCCACGTGCAGGGAAG 60.812 60.000 10.91 8.51 36.62 3.46
4051 4266 0.537188 CTATCCACGTGCAGGGAAGT 59.463 55.000 10.91 0.00 36.62 3.01
4052 4267 0.249120 TATCCACGTGCAGGGAAGTG 59.751 55.000 10.91 5.42 36.62 3.16
4053 4268 1.768684 ATCCACGTGCAGGGAAGTGT 61.769 55.000 10.91 0.00 36.62 3.55
4054 4269 2.253758 CCACGTGCAGGGAAGTGTG 61.254 63.158 10.91 0.00 33.14 3.82
4055 4270 2.111043 ACGTGCAGGGAAGTGTGG 59.889 61.111 11.67 0.00 0.00 4.17
4056 4271 2.425592 CGTGCAGGGAAGTGTGGA 59.574 61.111 0.00 0.00 0.00 4.02
4057 4272 1.227823 CGTGCAGGGAAGTGTGGAA 60.228 57.895 0.00 0.00 0.00 3.53
4058 4273 1.230635 CGTGCAGGGAAGTGTGGAAG 61.231 60.000 0.00 0.00 0.00 3.46
4059 4274 0.179018 GTGCAGGGAAGTGTGGAAGT 60.179 55.000 0.00 0.00 0.00 3.01
4060 4275 0.550914 TGCAGGGAAGTGTGGAAGTT 59.449 50.000 0.00 0.00 0.00 2.66
4061 4276 1.771854 TGCAGGGAAGTGTGGAAGTTA 59.228 47.619 0.00 0.00 0.00 2.24
4062 4277 2.224523 TGCAGGGAAGTGTGGAAGTTAG 60.225 50.000 0.00 0.00 0.00 2.34
4063 4278 2.427506 CAGGGAAGTGTGGAAGTTAGC 58.572 52.381 0.00 0.00 0.00 3.09
4064 4279 2.039084 CAGGGAAGTGTGGAAGTTAGCT 59.961 50.000 0.00 0.00 0.00 3.32
4065 4280 3.260884 CAGGGAAGTGTGGAAGTTAGCTA 59.739 47.826 0.00 0.00 0.00 3.32
4066 4281 3.515901 AGGGAAGTGTGGAAGTTAGCTAG 59.484 47.826 0.00 0.00 0.00 3.42
4067 4282 3.263261 GGAAGTGTGGAAGTTAGCTAGC 58.737 50.000 6.62 6.62 0.00 3.42
4068 4283 3.263261 GAAGTGTGGAAGTTAGCTAGCC 58.737 50.000 12.13 0.00 0.00 3.93
4069 4284 2.257207 AGTGTGGAAGTTAGCTAGCCA 58.743 47.619 12.13 0.00 0.00 4.75
4070 4285 2.028020 AGTGTGGAAGTTAGCTAGCCAC 60.028 50.000 20.95 20.95 44.16 5.01
4071 4286 1.067142 TGTGGAAGTTAGCTAGCCACG 60.067 52.381 21.64 0.00 45.53 4.94
4072 4287 1.067071 GTGGAAGTTAGCTAGCCACGT 60.067 52.381 12.13 6.96 39.12 4.49
4073 4288 1.067142 TGGAAGTTAGCTAGCCACGTG 60.067 52.381 12.13 9.08 0.00 4.49
4074 4289 1.000145 GAAGTTAGCTAGCCACGTGC 59.000 55.000 12.13 5.91 41.71 5.34
4085 4300 2.334946 CCACGTGCCAGAACCATGG 61.335 63.158 11.19 11.19 43.72 3.66
4105 4320 7.072454 ACCATGGCTAGGTTTTGAGATCTTATA 59.928 37.037 13.04 0.00 35.33 0.98
4251 4466 9.387123 GTTTTCACTCATCATCTTTTAGTTCAC 57.613 33.333 0.00 0.00 0.00 3.18
4252 4467 8.908786 TTTCACTCATCATCTTTTAGTTCACT 57.091 30.769 0.00 0.00 0.00 3.41
4288 4503 3.845781 ATCATAGGCCTAACCACAGTG 57.154 47.619 18.42 8.81 43.14 3.66
4314 4529 6.183360 GGAGTAATCTTACATGCCAAACTTCC 60.183 42.308 0.00 0.00 36.12 3.46
4392 4607 4.634004 TGTAAATATCAAGAACCCGCTGTG 59.366 41.667 0.00 0.00 0.00 3.66
4449 4664 1.756561 AAACAGGGCCGTTGCAACT 60.757 52.632 26.09 5.20 40.13 3.16
4525 4741 6.184789 TGTTCTAGGGTAATTTTTAGCCCAG 58.815 40.000 10.94 7.91 43.42 4.45
4716 5118 5.675575 GCAGCCTTCTGTAATGAAAGATGTG 60.676 44.000 0.00 0.00 42.29 3.21
4822 5235 0.246635 CTGTTACTGACGGTCCTGGG 59.753 60.000 5.55 0.00 0.00 4.45
4824 5237 1.192428 GTTACTGACGGTCCTGGGAT 58.808 55.000 5.55 0.00 0.00 3.85
4826 5239 2.062971 TACTGACGGTCCTGGGATAC 57.937 55.000 5.55 0.00 0.00 2.24
4842 5257 2.158490 GGATACTACTCCCTCCGTTCCT 60.158 54.545 0.00 0.00 0.00 3.36
4843 5258 2.725221 TACTACTCCCTCCGTTCCTC 57.275 55.000 0.00 0.00 0.00 3.71
4852 5267 4.553678 TCCCTCCGTTCCTCAATATAAGT 58.446 43.478 0.00 0.00 0.00 2.24
4853 5268 4.587684 TCCCTCCGTTCCTCAATATAAGTC 59.412 45.833 0.00 0.00 0.00 3.01
4855 5270 5.070580 CCCTCCGTTCCTCAATATAAGTCTT 59.929 44.000 0.00 0.00 0.00 3.01
4857 5272 6.480320 CCTCCGTTCCTCAATATAAGTCTTTG 59.520 42.308 0.00 0.00 0.00 2.77
4859 5274 8.070034 TCCGTTCCTCAATATAAGTCTTTGTA 57.930 34.615 0.00 0.00 0.00 2.41
4860 5275 8.195436 TCCGTTCCTCAATATAAGTCTTTGTAG 58.805 37.037 0.00 0.00 0.00 2.74
4862 5277 9.239002 CGTTCCTCAATATAAGTCTTTGTAGAG 57.761 37.037 0.00 0.00 0.00 2.43
4882 5297 9.916360 TGTAGAGATTTTACTAGATGGACTACA 57.084 33.333 0.00 0.00 34.91 2.74
4887 5302 8.794553 AGATTTTACTAGATGGACTACATACGG 58.205 37.037 0.00 0.00 40.72 4.02
4888 5303 8.701908 ATTTTACTAGATGGACTACATACGGA 57.298 34.615 0.00 0.00 40.72 4.69
4890 5305 4.073549 ACTAGATGGACTACATACGGAGC 58.926 47.826 0.00 0.00 40.72 4.70
4892 5307 3.296854 AGATGGACTACATACGGAGCAA 58.703 45.455 0.00 0.00 40.72 3.91
4893 5308 3.704566 AGATGGACTACATACGGAGCAAA 59.295 43.478 0.00 0.00 40.72 3.68
4894 5309 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
4895 5310 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
4896 5311 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
4897 5312 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
4898 5313 4.873827 GGACTACATACGGAGCAAAATGAA 59.126 41.667 0.00 0.00 0.00 2.57
4899 5314 5.527582 GGACTACATACGGAGCAAAATGAAT 59.472 40.000 0.00 0.00 0.00 2.57
4900 5315 6.363577 ACTACATACGGAGCAAAATGAATG 57.636 37.500 0.00 0.00 0.00 2.67
4901 5316 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
4902 5317 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
4903 5318 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
4904 5319 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
4905 5320 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
4906 5321 7.498900 ACATACGGAGCAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
4907 5322 6.949352 ACGGAGCAAAATGAATGAATCTAT 57.051 33.333 0.00 0.00 0.00 1.98
4908 5323 9.725019 ATACGGAGCAAAATGAATGAATCTATA 57.275 29.630 0.00 0.00 0.00 1.31
4909 5324 7.865707 ACGGAGCAAAATGAATGAATCTATAC 58.134 34.615 0.00 0.00 0.00 1.47
4910 5325 7.716998 ACGGAGCAAAATGAATGAATCTATACT 59.283 33.333 0.00 0.00 0.00 2.12
4911 5326 8.562892 CGGAGCAAAATGAATGAATCTATACTT 58.437 33.333 0.00 0.00 0.00 2.24
4941 5356 7.966339 ACATATATATACACCCGTATGTGGT 57.034 36.000 0.00 0.00 38.79 4.16
4942 5357 8.370266 ACATATATATACACCCGTATGTGGTT 57.630 34.615 0.00 0.00 38.79 3.67
4943 5358 8.472413 ACATATATATACACCCGTATGTGGTTC 58.528 37.037 0.00 0.00 38.79 3.62
4944 5359 2.994186 ATACACCCGTATGTGGTTCC 57.006 50.000 0.00 0.00 40.62 3.62
4945 5360 1.941377 TACACCCGTATGTGGTTCCT 58.059 50.000 0.00 0.00 40.62 3.36
4946 5361 1.941377 ACACCCGTATGTGGTTCCTA 58.059 50.000 0.00 0.00 40.62 2.94
4947 5362 1.829222 ACACCCGTATGTGGTTCCTAG 59.171 52.381 0.00 0.00 40.62 3.02
4948 5363 1.829222 CACCCGTATGTGGTTCCTAGT 59.171 52.381 0.00 0.00 32.46 2.57
4949 5364 1.829222 ACCCGTATGTGGTTCCTAGTG 59.171 52.381 0.00 0.00 29.75 2.74
4950 5365 1.138266 CCCGTATGTGGTTCCTAGTGG 59.862 57.143 0.00 0.00 0.00 4.00
4951 5366 2.104967 CCGTATGTGGTTCCTAGTGGA 58.895 52.381 0.00 0.00 41.36 4.02
4966 5381 7.554959 TCCTAGTGGAATCTCTACAAAAACT 57.445 36.000 0.00 0.00 39.87 2.66
4967 5382 7.974504 TCCTAGTGGAATCTCTACAAAAACTT 58.025 34.615 0.00 0.00 39.87 2.66
4968 5383 9.096823 TCCTAGTGGAATCTCTACAAAAACTTA 57.903 33.333 0.00 0.00 39.87 2.24
4969 5384 9.892130 CCTAGTGGAATCTCTACAAAAACTTAT 57.108 33.333 0.00 0.00 34.57 1.73
4974 5389 9.886132 TGGAATCTCTACAAAAACTTATACTCC 57.114 33.333 0.00 0.00 0.00 3.85
4975 5390 9.327628 GGAATCTCTACAAAAACTTATACTCCC 57.672 37.037 0.00 0.00 0.00 4.30
4978 5393 8.075761 TCTCTACAAAAACTTATACTCCCTCC 57.924 38.462 0.00 0.00 0.00 4.30
4979 5394 6.870769 TCTACAAAAACTTATACTCCCTCCG 58.129 40.000 0.00 0.00 0.00 4.63
4980 5395 5.494390 ACAAAAACTTATACTCCCTCCGT 57.506 39.130 0.00 0.00 0.00 4.69
4981 5396 5.872963 ACAAAAACTTATACTCCCTCCGTT 58.127 37.500 0.00 0.00 0.00 4.44
4982 5397 5.936372 ACAAAAACTTATACTCCCTCCGTTC 59.064 40.000 0.00 0.00 0.00 3.95
4983 5398 4.750021 AAACTTATACTCCCTCCGTTCC 57.250 45.455 0.00 0.00 0.00 3.62
4984 5399 3.684408 ACTTATACTCCCTCCGTTCCT 57.316 47.619 0.00 0.00 0.00 3.36
4985 5400 4.803329 ACTTATACTCCCTCCGTTCCTA 57.197 45.455 0.00 0.00 0.00 2.94
4986 5401 5.134725 ACTTATACTCCCTCCGTTCCTAA 57.865 43.478 0.00 0.00 0.00 2.69
4987 5402 5.522641 ACTTATACTCCCTCCGTTCCTAAA 58.477 41.667 0.00 0.00 0.00 1.85
4988 5403 6.141790 ACTTATACTCCCTCCGTTCCTAAAT 58.858 40.000 0.00 0.00 0.00 1.40
4989 5404 7.300658 ACTTATACTCCCTCCGTTCCTAAATA 58.699 38.462 0.00 0.00 0.00 1.40
4990 5405 7.232330 ACTTATACTCCCTCCGTTCCTAAATAC 59.768 40.741 0.00 0.00 0.00 1.89
4991 5406 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
4992 5407 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
4993 5408 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
4994 5409 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
4995 5410 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
4996 5411 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
4997 5412 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
4998 5413 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
4999 5414 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
5000 5415 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
5001 5416 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
5002 5417 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
5003 5418 8.248945 CCGTTCCTAAATACTTGTCTTTCTAGA 58.751 37.037 0.00 0.00 0.00 2.43
5027 5442 9.302345 AGACATTTCAAATGACTACTACATACG 57.698 33.333 17.30 0.00 0.00 3.06
5028 5443 8.420374 ACATTTCAAATGACTACTACATACGG 57.580 34.615 17.30 0.00 0.00 4.02
5029 5444 8.255206 ACATTTCAAATGACTACTACATACGGA 58.745 33.333 17.30 0.00 0.00 4.69
5030 5445 9.261180 CATTTCAAATGACTACTACATACGGAT 57.739 33.333 3.82 0.00 0.00 4.18
5031 5446 8.642908 TTTCAAATGACTACTACATACGGATG 57.357 34.615 5.94 5.94 39.16 3.51
5033 5448 8.454570 TCAAATGACTACTACATACGGATGTA 57.545 34.615 19.32 19.32 44.77 2.29
5034 5449 9.074576 TCAAATGACTACTACATACGGATGTAT 57.925 33.333 20.64 13.02 45.42 2.29
5072 5487 7.934855 AGAGTGTAGATTCATTCATTTTGCT 57.065 32.000 0.00 0.00 0.00 3.91
5073 5488 8.345724 AGAGTGTAGATTCATTCATTTTGCTT 57.654 30.769 0.00 0.00 0.00 3.91
5074 5489 8.457261 AGAGTGTAGATTCATTCATTTTGCTTC 58.543 33.333 0.00 0.00 0.00 3.86
5075 5490 7.246311 AGTGTAGATTCATTCATTTTGCTTCG 58.754 34.615 0.00 0.00 0.00 3.79
5076 5491 7.023575 GTGTAGATTCATTCATTTTGCTTCGT 58.976 34.615 0.00 0.00 0.00 3.85
5077 5492 8.175069 GTGTAGATTCATTCATTTTGCTTCGTA 58.825 33.333 0.00 0.00 0.00 3.43
5078 5493 8.892723 TGTAGATTCATTCATTTTGCTTCGTAT 58.107 29.630 0.00 0.00 0.00 3.06
5079 5494 9.162793 GTAGATTCATTCATTTTGCTTCGTATG 57.837 33.333 0.00 0.00 0.00 2.39
5080 5495 7.765307 AGATTCATTCATTTTGCTTCGTATGT 58.235 30.769 0.00 0.00 0.00 2.29
5081 5496 8.892723 AGATTCATTCATTTTGCTTCGTATGTA 58.107 29.630 0.00 0.00 0.00 2.29
5082 5497 9.162793 GATTCATTCATTTTGCTTCGTATGTAG 57.837 33.333 0.00 0.00 0.00 2.74
5083 5498 7.609760 TCATTCATTTTGCTTCGTATGTAGT 57.390 32.000 0.00 0.00 0.00 2.73
5084 5499 7.684670 TCATTCATTTTGCTTCGTATGTAGTC 58.315 34.615 0.00 0.00 0.00 2.59
5085 5500 7.333174 TCATTCATTTTGCTTCGTATGTAGTCA 59.667 33.333 0.00 0.00 0.00 3.41
5086 5501 6.403333 TCATTTTGCTTCGTATGTAGTCAC 57.597 37.500 0.00 0.00 0.00 3.67
5087 5502 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
5088 5503 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
5089 5504 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
5090 5505 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
5091 5506 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
5092 5507 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
5093 5508 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
5094 5509 5.404366 GCTTCGTATGTAGTCACTTGTTGAA 59.596 40.000 0.00 0.00 35.39 2.69
5095 5510 6.073980 GCTTCGTATGTAGTCACTTGTTGAAA 60.074 38.462 0.00 0.00 35.39 2.69
5096 5511 7.360101 GCTTCGTATGTAGTCACTTGTTGAAAT 60.360 37.037 0.00 0.00 35.39 2.17
5097 5512 7.346208 TCGTATGTAGTCACTTGTTGAAATG 57.654 36.000 0.00 0.00 35.39 2.32
5098 5513 6.926826 TCGTATGTAGTCACTTGTTGAAATGT 59.073 34.615 0.00 0.00 35.39 2.71
5099 5514 7.115805 TCGTATGTAGTCACTTGTTGAAATGTC 59.884 37.037 0.00 0.00 35.39 3.06
5100 5515 7.116376 CGTATGTAGTCACTTGTTGAAATGTCT 59.884 37.037 0.00 0.00 35.39 3.41
5101 5516 9.419297 GTATGTAGTCACTTGTTGAAATGTCTA 57.581 33.333 0.00 0.00 35.39 2.59
5102 5517 7.946655 TGTAGTCACTTGTTGAAATGTCTAG 57.053 36.000 0.00 0.00 35.39 2.43
5103 5518 7.722363 TGTAGTCACTTGTTGAAATGTCTAGA 58.278 34.615 0.00 0.00 35.39 2.43
5104 5519 8.201464 TGTAGTCACTTGTTGAAATGTCTAGAA 58.799 33.333 0.00 0.00 35.39 2.10
5105 5520 9.042008 GTAGTCACTTGTTGAAATGTCTAGAAA 57.958 33.333 0.00 0.00 35.39 2.52
5106 5521 8.506168 AGTCACTTGTTGAAATGTCTAGAAAA 57.494 30.769 0.00 0.00 35.39 2.29
5107 5522 8.956426 AGTCACTTGTTGAAATGTCTAGAAAAA 58.044 29.630 0.00 0.00 35.39 1.94
5108 5523 9.010366 GTCACTTGTTGAAATGTCTAGAAAAAC 57.990 33.333 0.00 0.00 35.39 2.43
5109 5524 8.735315 TCACTTGTTGAAATGTCTAGAAAAACA 58.265 29.630 0.00 0.00 0.00 2.83
5110 5525 9.352784 CACTTGTTGAAATGTCTAGAAAAACAA 57.647 29.630 9.32 9.32 35.60 2.83
5112 5527 9.573133 CTTGTTGAAATGTCTAGAAAAACAAGT 57.427 29.630 20.56 0.83 43.94 3.16
5127 5542 8.565416 AGAAAAACAAGTATTTAAGAACGGAGG 58.435 33.333 0.00 0.00 0.00 4.30
5128 5543 6.812879 AAACAAGTATTTAAGAACGGAGGG 57.187 37.500 0.00 0.00 0.00 4.30
5129 5544 5.750352 ACAAGTATTTAAGAACGGAGGGA 57.250 39.130 0.00 0.00 0.00 4.20
5130 5545 5.731591 ACAAGTATTTAAGAACGGAGGGAG 58.268 41.667 0.00 0.00 0.00 4.30
5131 5546 5.247792 ACAAGTATTTAAGAACGGAGGGAGT 59.752 40.000 0.00 0.00 0.00 3.85
5132 5547 6.438425 ACAAGTATTTAAGAACGGAGGGAGTA 59.562 38.462 0.00 0.00 0.00 2.59
5133 5548 7.125356 ACAAGTATTTAAGAACGGAGGGAGTAT 59.875 37.037 0.00 0.00 0.00 2.12
5134 5549 7.672122 AGTATTTAAGAACGGAGGGAGTATT 57.328 36.000 0.00 0.00 0.00 1.89
5135 5550 8.087303 AGTATTTAAGAACGGAGGGAGTATTT 57.913 34.615 0.00 0.00 0.00 1.40
5136 5551 9.205513 AGTATTTAAGAACGGAGGGAGTATTTA 57.794 33.333 0.00 0.00 0.00 1.40
5139 5554 4.261411 AGAACGGAGGGAGTATTTAGGA 57.739 45.455 0.00 0.00 0.00 2.94
5142 5557 3.716431 ACGGAGGGAGTATTTAGGAACA 58.284 45.455 0.00 0.00 0.00 3.18
5196 5611 2.019249 GCTATGCATGCAAGGAAGACA 58.981 47.619 26.68 0.00 0.00 3.41
5283 5698 6.930164 TGTTTAGCTTTTAACGTGTCATCCTA 59.070 34.615 0.00 0.00 0.00 2.94
5287 5702 2.973694 TTAACGTGTCATCCTAGGCC 57.026 50.000 2.96 0.00 0.00 5.19
5300 5715 4.023726 TCCTAGGCCGTACAAACAAAAT 57.976 40.909 2.96 0.00 0.00 1.82
5303 5718 6.181908 TCCTAGGCCGTACAAACAAAATTAT 58.818 36.000 2.96 0.00 0.00 1.28
5319 5734 5.897377 AAATTATAGACAGGCACACCAAC 57.103 39.130 0.00 0.00 39.06 3.77
5320 5735 4.568072 ATTATAGACAGGCACACCAACA 57.432 40.909 0.00 0.00 39.06 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 6.854091 AAACCTAGACTACAAGGGAGTAAG 57.146 41.667 0.00 0.00 37.18 2.34
56 57 2.002586 CGAAGCCAAGACGATGAACAT 58.997 47.619 0.00 0.00 0.00 2.71
81 86 7.715265 ATCTTTATTCAGCGTCGTCATTATT 57.285 32.000 0.00 0.00 0.00 1.40
202 208 2.923035 ACAGGTCCACCACGAGGG 60.923 66.667 3.29 0.00 44.81 4.30
240 246 1.075542 CGCTGGAGCAAACATCGTTA 58.924 50.000 0.00 0.00 42.21 3.18
268 274 1.280457 CTGGACTACCTCCCAAGCTT 58.720 55.000 0.00 0.00 38.49 3.74
304 310 2.219445 CAGATGTCGTGAATGCATACCG 59.781 50.000 0.00 2.71 0.00 4.02
342 348 2.577606 TCCACGAATCACAAACCCAT 57.422 45.000 0.00 0.00 0.00 4.00
353 359 1.202806 CCATACCTGCCATCCACGAAT 60.203 52.381 0.00 0.00 0.00 3.34
400 406 2.338809 ACTCCAGTTCTGACATCCCAA 58.661 47.619 1.00 0.00 0.00 4.12
413 419 0.959553 ACACGTCATCGAACTCCAGT 59.040 50.000 0.00 0.00 40.62 4.00
427 433 2.203153 GCAACACCCTGGACACGT 60.203 61.111 0.00 0.00 0.00 4.49
455 461 1.154225 GCCATTGCCGTTGAACGAG 60.154 57.895 20.47 10.39 46.05 4.18
483 489 3.488423 CCTCCAAGGTGGCTCACT 58.512 61.111 5.48 0.00 37.47 3.41
522 529 1.306141 TCCTCACCCGAGCTCCATT 60.306 57.895 8.47 0.00 38.00 3.16
566 585 2.202395 GCACCACCACAGCAACCAT 61.202 57.895 0.00 0.00 0.00 3.55
752 775 5.630121 TCATTTATCCATTGCCCTTACGAT 58.370 37.500 0.00 0.00 0.00 3.73
789 814 3.306472 TCAGGGTGTATAAATTGCCCC 57.694 47.619 0.00 0.00 40.14 5.80
800 825 5.426185 ACTTTAATACCGGAATCAGGGTGTA 59.574 40.000 9.46 0.00 37.09 2.90
869 894 6.976934 AAACTTATGGCTCTTCCTCAAAAA 57.023 33.333 0.00 0.00 35.26 1.94
870 895 6.976934 AAAACTTATGGCTCTTCCTCAAAA 57.023 33.333 0.00 0.00 35.26 2.44
871 896 7.174946 CAGTAAAACTTATGGCTCTTCCTCAAA 59.825 37.037 0.00 0.00 35.26 2.69
872 897 6.655003 CAGTAAAACTTATGGCTCTTCCTCAA 59.345 38.462 0.00 0.00 35.26 3.02
873 898 6.013725 TCAGTAAAACTTATGGCTCTTCCTCA 60.014 38.462 0.00 0.00 35.26 3.86
874 899 6.314152 GTCAGTAAAACTTATGGCTCTTCCTC 59.686 42.308 0.00 0.00 35.26 3.71
875 900 6.174049 GTCAGTAAAACTTATGGCTCTTCCT 58.826 40.000 0.00 0.00 35.26 3.36
876 901 5.354513 GGTCAGTAAAACTTATGGCTCTTCC 59.645 44.000 0.00 0.00 0.00 3.46
877 902 5.063564 CGGTCAGTAAAACTTATGGCTCTTC 59.936 44.000 0.00 0.00 0.00 2.87
878 903 4.935808 CGGTCAGTAAAACTTATGGCTCTT 59.064 41.667 0.00 0.00 0.00 2.85
879 904 4.020485 ACGGTCAGTAAAACTTATGGCTCT 60.020 41.667 0.00 0.00 0.00 4.09
925 961 8.744568 ATGGTGAGGATATTTCTCTTTTCTTC 57.255 34.615 8.03 0.00 32.78 2.87
929 965 8.753133 GGAAAATGGTGAGGATATTTCTCTTTT 58.247 33.333 8.03 6.54 32.78 2.27
1054 1096 1.676014 GGTCTGGTGCTGCTCGTAATT 60.676 52.381 0.00 0.00 0.00 1.40
1163 1205 2.284258 AAGAGAGGCCGTGGAGCT 60.284 61.111 0.00 0.00 0.00 4.09
1182 1224 1.844544 TTAGGCGGGAAAGGGTGGTC 61.845 60.000 0.00 0.00 0.00 4.02
1189 1231 4.286291 AGGTAATCCTATTAGGCGGGAAAG 59.714 45.833 4.73 0.00 43.12 2.62
1236 1278 0.107214 TGCTCCAAACATCGGATCCC 60.107 55.000 6.06 0.00 0.00 3.85
1243 1286 1.205417 CCCAACCATGCTCCAAACATC 59.795 52.381 0.00 0.00 0.00 3.06
1259 1302 0.776810 TCTGCATCAGGAAACCCCAA 59.223 50.000 0.00 0.00 37.41 4.12
1269 1312 5.695363 ACGAATCATAGTGAATCTGCATCAG 59.305 40.000 0.00 0.00 0.00 2.90
1286 1329 3.555518 CGCGATCTAGATCAACGAATCA 58.444 45.455 28.40 0.00 38.52 2.57
1317 1360 5.413309 ACACAAATTCCAGTTCCACAAAA 57.587 34.783 0.00 0.00 0.00 2.44
1368 1411 3.829601 ACGGCCAATAACATTTCCAGAAA 59.170 39.130 2.24 0.00 34.46 2.52
1457 1500 7.148623 GGCTAGTTTCTATACGCCATACAAATC 60.149 40.741 0.00 0.00 37.48 2.17
1511 1555 6.539173 TCACCTGATACACCTGTTGTAAAAT 58.461 36.000 0.00 0.00 44.11 1.82
1742 1786 3.568853 CGGTACCCTCGATCTTCTTGTAT 59.431 47.826 6.25 0.00 0.00 2.29
1830 1874 8.927411 TCTATCAAACATATCAGGAATGTCAGA 58.073 33.333 0.00 0.00 36.56 3.27
1860 1904 6.433093 ACGAAGATGGTAAAAAGTTGGCTAAT 59.567 34.615 0.00 0.00 0.00 1.73
2023 2069 7.620880 TGCTAAGGTAGACACAATCAGTAAAT 58.379 34.615 0.00 0.00 0.00 1.40
2076 2122 8.465273 AAAAGAAAGTATGCCTTTAGTTCTGT 57.535 30.769 0.00 0.00 43.47 3.41
2101 2147 3.202906 GGCTGTCAAGTACTGTGTCAAA 58.797 45.455 0.00 0.00 0.00 2.69
2226 2272 3.851458 AGGAAACAACTTTACCTCCGT 57.149 42.857 0.00 0.00 0.00 4.69
2355 2402 3.323243 GCACGGCACTCTAAAGTCTAAA 58.677 45.455 0.00 0.00 31.71 1.85
2356 2403 2.353406 GGCACGGCACTCTAAAGTCTAA 60.353 50.000 0.00 0.00 31.71 2.10
2357 2404 1.203994 GGCACGGCACTCTAAAGTCTA 59.796 52.381 0.00 0.00 31.71 2.59
2358 2405 0.037232 GGCACGGCACTCTAAAGTCT 60.037 55.000 0.00 0.00 31.71 3.24
2359 2406 0.320421 TGGCACGGCACTCTAAAGTC 60.320 55.000 0.00 0.00 31.71 3.01
2360 2407 0.107831 TTGGCACGGCACTCTAAAGT 59.892 50.000 0.00 0.00 35.60 2.66
2361 2408 0.798776 CTTGGCACGGCACTCTAAAG 59.201 55.000 0.00 0.00 0.00 1.85
2585 2633 4.937696 TGCGTCGATTCACATGTAAATT 57.062 36.364 0.00 0.00 0.00 1.82
2648 2696 3.764885 ACGGCATTAAGAAACATGCTC 57.235 42.857 4.26 0.00 44.50 4.26
2652 2700 6.266168 TCATTCAACGGCATTAAGAAACAT 57.734 33.333 0.00 0.00 0.00 2.71
2777 2827 3.554324 GCACCACACAATACTACATACCG 59.446 47.826 0.00 0.00 0.00 4.02
2910 2960 6.419484 TCACCTCAGAACTAATTTGTCTCA 57.581 37.500 0.00 0.00 0.00 3.27
3160 3210 9.553064 AACTAGGTTATTGATATGAAGAAGCAG 57.447 33.333 12.74 10.20 29.09 4.24
3161 3211 9.905713 AAACTAGGTTATTGATATGAAGAAGCA 57.094 29.630 12.74 0.69 29.09 3.91
3212 3268 3.517901 ACTATGAAGGAATTGACACCCGA 59.482 43.478 0.00 0.00 0.00 5.14
3234 3290 8.522830 GGGATCAAATGAAATAGACACAAGAAA 58.477 33.333 0.00 0.00 0.00 2.52
3260 3316 7.672983 ACACTTGTAGTCAAATCATAGGTTG 57.327 36.000 0.00 0.00 32.87 3.77
3383 3439 4.513406 TGTGGGGATTATTTAGGTCCAC 57.487 45.455 0.00 0.00 42.32 4.02
3418 3474 9.639601 GGAGAAAACATTTAGAAACCCATTAAG 57.360 33.333 0.00 0.00 0.00 1.85
3622 3678 4.809426 CAGGCAGTAACGGGAAAATAGTAG 59.191 45.833 0.00 0.00 0.00 2.57
3646 3702 4.646492 ACTTCCCAACATGCCAAATATCTC 59.354 41.667 0.00 0.00 0.00 2.75
3663 3719 4.222145 TCCCGACATAATAGCATACTTCCC 59.778 45.833 0.00 0.00 0.00 3.97
3664 3720 5.169295 GTCCCGACATAATAGCATACTTCC 58.831 45.833 0.00 0.00 0.00 3.46
3665 3721 4.857588 CGTCCCGACATAATAGCATACTTC 59.142 45.833 0.00 0.00 0.00 3.01
3666 3722 4.321750 CCGTCCCGACATAATAGCATACTT 60.322 45.833 0.00 0.00 0.00 2.24
3667 3723 3.192844 CCGTCCCGACATAATAGCATACT 59.807 47.826 0.00 0.00 0.00 2.12
3668 3724 3.192001 TCCGTCCCGACATAATAGCATAC 59.808 47.826 0.00 0.00 0.00 2.39
3669 3725 3.423749 TCCGTCCCGACATAATAGCATA 58.576 45.455 0.00 0.00 0.00 3.14
3670 3726 2.231478 CTCCGTCCCGACATAATAGCAT 59.769 50.000 0.00 0.00 0.00 3.79
3671 3727 1.611977 CTCCGTCCCGACATAATAGCA 59.388 52.381 0.00 0.00 0.00 3.49
3672 3728 1.067776 CCTCCGTCCCGACATAATAGC 60.068 57.143 0.00 0.00 0.00 2.97
3673 3729 1.544691 CCCTCCGTCCCGACATAATAG 59.455 57.143 0.00 0.00 0.00 1.73
3674 3730 1.624336 CCCTCCGTCCCGACATAATA 58.376 55.000 0.00 0.00 0.00 0.98
3675 3731 1.119574 CCCCTCCGTCCCGACATAAT 61.120 60.000 0.00 0.00 0.00 1.28
3676 3732 1.759299 CCCCTCCGTCCCGACATAA 60.759 63.158 0.00 0.00 0.00 1.90
3677 3733 2.123597 CCCCTCCGTCCCGACATA 60.124 66.667 0.00 0.00 0.00 2.29
3680 3736 4.447342 TACCCCCTCCGTCCCGAC 62.447 72.222 0.00 0.00 0.00 4.79
3681 3737 4.447342 GTACCCCCTCCGTCCCGA 62.447 72.222 0.00 0.00 0.00 5.14
3682 3738 2.363292 ATAGTACCCCCTCCGTCCCG 62.363 65.000 0.00 0.00 0.00 5.14
3731 3787 4.332819 GCAAAATAGCGTACTTCCTGACAT 59.667 41.667 0.00 0.00 0.00 3.06
3744 3800 1.720852 GTGCCAACAAGCAAAATAGCG 59.279 47.619 0.00 0.00 46.19 4.26
3761 3817 3.976169 TGTTGCTAGGAAAATGTTGTGC 58.024 40.909 0.00 0.00 0.00 4.57
3869 3925 1.548269 ACAGTGACTAAGGCTGAGAGC 59.452 52.381 5.69 0.00 41.46 4.09
3953 4168 3.700038 TCAGGTCTCTCTTTACGGAATCC 59.300 47.826 0.00 0.00 0.00 3.01
3955 4170 4.160626 CCTTCAGGTCTCTCTTTACGGAAT 59.839 45.833 0.00 0.00 0.00 3.01
3956 4171 3.510360 CCTTCAGGTCTCTCTTTACGGAA 59.490 47.826 0.00 0.00 0.00 4.30
4044 4259 2.339769 AGCTAACTTCCACACTTCCCT 58.660 47.619 0.00 0.00 0.00 4.20
4045 4260 2.861147 AGCTAACTTCCACACTTCCC 57.139 50.000 0.00 0.00 0.00 3.97
4046 4261 3.263261 GCTAGCTAACTTCCACACTTCC 58.737 50.000 7.70 0.00 0.00 3.46
4047 4262 3.263261 GGCTAGCTAACTTCCACACTTC 58.737 50.000 15.72 0.00 0.00 3.01
4048 4263 2.637872 TGGCTAGCTAACTTCCACACTT 59.362 45.455 15.72 0.00 0.00 3.16
4049 4264 2.028020 GTGGCTAGCTAACTTCCACACT 60.028 50.000 15.72 0.00 42.90 3.55
4050 4265 2.347731 GTGGCTAGCTAACTTCCACAC 58.652 52.381 15.72 6.94 42.90 3.82
4051 4266 1.067142 CGTGGCTAGCTAACTTCCACA 60.067 52.381 22.81 0.00 43.24 4.17
4052 4267 1.067071 ACGTGGCTAGCTAACTTCCAC 60.067 52.381 15.72 17.45 41.36 4.02
4053 4268 1.067142 CACGTGGCTAGCTAACTTCCA 60.067 52.381 15.72 0.00 0.00 3.53
4054 4269 1.641577 CACGTGGCTAGCTAACTTCC 58.358 55.000 15.72 0.00 0.00 3.46
4055 4270 1.000145 GCACGTGGCTAGCTAACTTC 59.000 55.000 18.88 0.00 40.25 3.01
4056 4271 0.391263 GGCACGTGGCTAGCTAACTT 60.391 55.000 32.54 4.53 44.01 2.66
4057 4272 1.218316 GGCACGTGGCTAGCTAACT 59.782 57.895 32.54 0.00 44.01 2.24
4058 4273 1.079405 TGGCACGTGGCTAGCTAAC 60.079 57.895 37.33 12.40 44.01 2.34
4059 4274 1.218047 CTGGCACGTGGCTAGCTAA 59.782 57.895 37.33 18.91 44.53 3.09
4060 4275 2.892640 CTGGCACGTGGCTAGCTA 59.107 61.111 37.33 19.61 44.53 3.32
4064 4279 1.836999 ATGGTTCTGGCACGTGGCTA 61.837 55.000 37.33 24.92 44.01 3.93
4065 4280 3.196207 ATGGTTCTGGCACGTGGCT 62.196 57.895 37.33 16.99 44.01 4.75
4066 4281 2.672996 ATGGTTCTGGCACGTGGC 60.673 61.111 33.07 33.07 43.74 5.01
4067 4282 2.334946 CCATGGTTCTGGCACGTGG 61.335 63.158 18.88 0.08 0.00 4.94
4068 4283 3.266964 CCATGGTTCTGGCACGTG 58.733 61.111 12.28 12.28 0.00 4.49
4074 4289 2.493278 CAAAACCTAGCCATGGTTCTGG 59.507 50.000 14.67 15.32 45.99 3.86
4085 4300 8.966069 AAACCTATAAGATCTCAAAACCTAGC 57.034 34.615 0.00 0.00 0.00 3.42
4105 4320 4.291249 TGGGGTAAGCTAGAATTGAAACCT 59.709 41.667 0.00 0.00 0.00 3.50
4251 4466 7.442666 GGCCTATGATAAACTAAGAACTGGAAG 59.557 40.741 0.00 0.00 42.29 3.46
4252 4467 7.127339 AGGCCTATGATAAACTAAGAACTGGAA 59.873 37.037 1.29 0.00 0.00 3.53
4288 4503 5.193679 AGTTTGGCATGTAAGATTACTCCC 58.806 41.667 4.50 3.15 34.77 4.30
4314 4529 2.393768 GCTCCACTGCACACCGATG 61.394 63.158 0.00 0.00 0.00 3.84
4392 4607 7.442364 TGATAACATGCAGTAAGGAAGCTATTC 59.558 37.037 0.00 0.00 34.46 1.75
4449 4664 0.468226 GATGGCCGGAACTCATACCA 59.532 55.000 5.05 0.00 0.00 3.25
4525 4741 2.024176 TTCTTGTAGCGCTGATTCCC 57.976 50.000 22.90 1.04 0.00 3.97
4822 5235 3.148412 GAGGAACGGAGGGAGTAGTATC 58.852 54.545 0.00 0.00 0.00 2.24
4824 5237 1.918262 TGAGGAACGGAGGGAGTAGTA 59.082 52.381 0.00 0.00 0.00 1.82
4826 5239 1.848652 TTGAGGAACGGAGGGAGTAG 58.151 55.000 0.00 0.00 0.00 2.57
4860 5275 9.828852 CGTATGTAGTCCATCTAGTAAAATCTC 57.171 37.037 0.00 0.00 34.86 2.75
4862 5277 8.790718 TCCGTATGTAGTCCATCTAGTAAAATC 58.209 37.037 0.00 0.00 34.86 2.17
4863 5278 8.701908 TCCGTATGTAGTCCATCTAGTAAAAT 57.298 34.615 0.00 0.00 34.86 1.82
4864 5279 7.255381 GCTCCGTATGTAGTCCATCTAGTAAAA 60.255 40.741 0.00 0.00 34.86 1.52
4865 5280 6.206243 GCTCCGTATGTAGTCCATCTAGTAAA 59.794 42.308 0.00 0.00 34.86 2.01
4867 5282 5.221783 TGCTCCGTATGTAGTCCATCTAGTA 60.222 44.000 0.00 0.00 34.86 1.82
4868 5283 4.073549 GCTCCGTATGTAGTCCATCTAGT 58.926 47.826 0.00 0.00 34.86 2.57
4869 5284 4.072839 TGCTCCGTATGTAGTCCATCTAG 58.927 47.826 0.00 0.00 34.86 2.43
4871 5286 2.945456 TGCTCCGTATGTAGTCCATCT 58.055 47.619 0.00 0.00 34.86 2.90
4873 5288 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
4875 5290 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
4876 5291 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
4877 5292 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
4878 5293 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
4880 5295 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
4881 5296 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
4882 5297 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
4883 5298 8.988934 GTATAGATTCATTCATTTTGCTCCGTA 58.011 33.333 0.00 0.00 0.00 4.02
4884 5299 6.949352 ATAGATTCATTCATTTTGCTCCGT 57.051 33.333 0.00 0.00 0.00 4.69
4885 5300 8.092521 AGTATAGATTCATTCATTTTGCTCCG 57.907 34.615 0.00 0.00 0.00 4.63
4915 5330 9.650714 ACCACATACGGGTGTATATATATGTAT 57.349 33.333 5.44 1.24 39.28 2.29
4916 5331 9.478238 AACCACATACGGGTGTATATATATGTA 57.522 33.333 5.44 0.00 39.28 2.29
4917 5332 7.966339 ACCACATACGGGTGTATATATATGT 57.034 36.000 5.44 0.00 39.28 2.29
4918 5333 7.924412 GGAACCACATACGGGTGTATATATATG 59.076 40.741 5.44 0.00 39.28 1.78
4919 5334 7.842743 AGGAACCACATACGGGTGTATATATAT 59.157 37.037 0.00 0.00 39.28 0.86
4920 5335 7.184161 AGGAACCACATACGGGTGTATATATA 58.816 38.462 3.93 0.00 39.28 0.86
4921 5336 6.021030 AGGAACCACATACGGGTGTATATAT 58.979 40.000 3.93 0.00 39.28 0.86
4922 5337 5.396485 AGGAACCACATACGGGTGTATATA 58.604 41.667 3.93 0.00 39.28 0.86
4923 5338 4.228824 AGGAACCACATACGGGTGTATAT 58.771 43.478 3.93 0.00 39.28 0.86
4924 5339 3.645434 AGGAACCACATACGGGTGTATA 58.355 45.455 3.93 0.00 39.28 1.47
4925 5340 2.474112 AGGAACCACATACGGGTGTAT 58.526 47.619 3.93 0.00 42.03 2.29
4926 5341 1.941377 AGGAACCACATACGGGTGTA 58.059 50.000 3.93 0.00 39.01 2.90
4927 5342 1.829222 CTAGGAACCACATACGGGTGT 59.171 52.381 3.93 0.00 39.01 4.16
4928 5343 1.829222 ACTAGGAACCACATACGGGTG 59.171 52.381 0.00 0.00 39.01 4.61
4929 5344 1.829222 CACTAGGAACCACATACGGGT 59.171 52.381 0.00 0.00 41.41 5.28
4930 5345 1.138266 CCACTAGGAACCACATACGGG 59.862 57.143 0.00 0.00 36.89 5.28
4931 5346 2.104967 TCCACTAGGAACCACATACGG 58.895 52.381 0.00 0.00 42.23 4.02
4942 5357 7.554959 AGTTTTTGTAGAGATTCCACTAGGA 57.445 36.000 0.00 0.00 43.93 2.94
4943 5358 9.892130 ATAAGTTTTTGTAGAGATTCCACTAGG 57.108 33.333 0.00 0.00 0.00 3.02
4948 5363 9.886132 GGAGTATAAGTTTTTGTAGAGATTCCA 57.114 33.333 0.00 0.00 0.00 3.53
4949 5364 9.327628 GGGAGTATAAGTTTTTGTAGAGATTCC 57.672 37.037 0.00 0.00 0.00 3.01
4952 5367 8.706521 GGAGGGAGTATAAGTTTTTGTAGAGAT 58.293 37.037 0.00 0.00 0.00 2.75
4953 5368 7.147949 CGGAGGGAGTATAAGTTTTTGTAGAGA 60.148 40.741 0.00 0.00 0.00 3.10
4954 5369 6.979238 CGGAGGGAGTATAAGTTTTTGTAGAG 59.021 42.308 0.00 0.00 0.00 2.43
4955 5370 6.438425 ACGGAGGGAGTATAAGTTTTTGTAGA 59.562 38.462 0.00 0.00 0.00 2.59
4956 5371 6.637657 ACGGAGGGAGTATAAGTTTTTGTAG 58.362 40.000 0.00 0.00 0.00 2.74
4957 5372 6.610075 ACGGAGGGAGTATAAGTTTTTGTA 57.390 37.500 0.00 0.00 0.00 2.41
4958 5373 5.494390 ACGGAGGGAGTATAAGTTTTTGT 57.506 39.130 0.00 0.00 0.00 2.83
4959 5374 5.353400 GGAACGGAGGGAGTATAAGTTTTTG 59.647 44.000 0.00 0.00 0.00 2.44
4960 5375 5.250082 AGGAACGGAGGGAGTATAAGTTTTT 59.750 40.000 0.00 0.00 0.00 1.94
4961 5376 4.781621 AGGAACGGAGGGAGTATAAGTTTT 59.218 41.667 0.00 0.00 0.00 2.43
4962 5377 4.359996 AGGAACGGAGGGAGTATAAGTTT 58.640 43.478 0.00 0.00 0.00 2.66
4963 5378 3.991683 AGGAACGGAGGGAGTATAAGTT 58.008 45.455 0.00 0.00 0.00 2.66
4964 5379 3.684408 AGGAACGGAGGGAGTATAAGT 57.316 47.619 0.00 0.00 0.00 2.24
4965 5380 6.667558 ATTTAGGAACGGAGGGAGTATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4966 5381 7.300658 AGTATTTAGGAACGGAGGGAGTATAA 58.699 38.462 0.00 0.00 0.00 0.98
4967 5382 6.856757 AGTATTTAGGAACGGAGGGAGTATA 58.143 40.000 0.00 0.00 0.00 1.47
4968 5383 5.713807 AGTATTTAGGAACGGAGGGAGTAT 58.286 41.667 0.00 0.00 0.00 2.12
4969 5384 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
4970 5385 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
4971 5386 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
4972 5387 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
4973 5388 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
4974 5389 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
4975 5390 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
4976 5391 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
4977 5392 8.248945 TCTAGAAAGACAAGTATTTAGGAACGG 58.751 37.037 0.00 0.00 0.00 4.44
5001 5416 9.302345 CGTATGTAGTAGTCATTTGAAATGTCT 57.698 33.333 18.62 18.62 0.00 3.41
5002 5417 8.540492 CCGTATGTAGTAGTCATTTGAAATGTC 58.460 37.037 16.62 11.74 0.00 3.06
5003 5418 8.255206 TCCGTATGTAGTAGTCATTTGAAATGT 58.745 33.333 16.62 2.38 0.00 2.71
5004 5419 8.642908 TCCGTATGTAGTAGTCATTTGAAATG 57.357 34.615 11.54 11.54 0.00 2.32
5005 5420 9.261180 CATCCGTATGTAGTAGTCATTTGAAAT 57.739 33.333 0.00 0.00 0.00 2.17
5006 5421 8.255206 ACATCCGTATGTAGTAGTCATTTGAAA 58.745 33.333 0.00 0.00 44.66 2.69
5007 5422 7.778083 ACATCCGTATGTAGTAGTCATTTGAA 58.222 34.615 0.00 0.00 44.66 2.69
5008 5423 7.342769 ACATCCGTATGTAGTAGTCATTTGA 57.657 36.000 0.00 0.00 44.66 2.69
5046 5461 9.453572 AGCAAAATGAATGAATCTACACTCTAA 57.546 29.630 0.00 0.00 0.00 2.10
5047 5462 9.453572 AAGCAAAATGAATGAATCTACACTCTA 57.546 29.630 0.00 0.00 0.00 2.43
5048 5463 7.934855 AGCAAAATGAATGAATCTACACTCT 57.065 32.000 0.00 0.00 0.00 3.24
5049 5464 7.427606 CGAAGCAAAATGAATGAATCTACACTC 59.572 37.037 0.00 0.00 0.00 3.51
5050 5465 7.094634 ACGAAGCAAAATGAATGAATCTACACT 60.095 33.333 0.00 0.00 0.00 3.55
5051 5466 7.023575 ACGAAGCAAAATGAATGAATCTACAC 58.976 34.615 0.00 0.00 0.00 2.90
5052 5467 7.144722 ACGAAGCAAAATGAATGAATCTACA 57.855 32.000 0.00 0.00 0.00 2.74
5053 5468 9.162793 CATACGAAGCAAAATGAATGAATCTAC 57.837 33.333 0.00 0.00 0.00 2.59
5054 5469 8.892723 ACATACGAAGCAAAATGAATGAATCTA 58.107 29.630 0.00 0.00 0.00 1.98
5055 5470 7.765307 ACATACGAAGCAAAATGAATGAATCT 58.235 30.769 0.00 0.00 0.00 2.40
5056 5471 7.975866 ACATACGAAGCAAAATGAATGAATC 57.024 32.000 0.00 0.00 0.00 2.52
5057 5472 8.677300 ACTACATACGAAGCAAAATGAATGAAT 58.323 29.630 0.00 0.00 0.00 2.57
5058 5473 8.039603 ACTACATACGAAGCAAAATGAATGAA 57.960 30.769 0.00 0.00 0.00 2.57
5059 5474 7.333174 TGACTACATACGAAGCAAAATGAATGA 59.667 33.333 0.00 0.00 0.00 2.57
5060 5475 7.426456 GTGACTACATACGAAGCAAAATGAATG 59.574 37.037 0.00 0.00 0.00 2.67
5061 5476 7.334421 AGTGACTACATACGAAGCAAAATGAAT 59.666 33.333 0.00 0.00 0.00 2.57
5062 5477 6.649141 AGTGACTACATACGAAGCAAAATGAA 59.351 34.615 0.00 0.00 0.00 2.57
5063 5478 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
5064 5479 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
5065 5480 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
5066 5481 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
5067 5482 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
5068 5483 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
5069 5484 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
5070 5485 4.921515 TCAACAAGTGACTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
5071 5486 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
5072 5487 7.439955 ACATTTCAACAAGTGACTACATACGAA 59.560 33.333 0.00 0.00 35.39 3.85
5073 5488 6.926826 ACATTTCAACAAGTGACTACATACGA 59.073 34.615 0.00 0.00 35.39 3.43
5074 5489 7.116376 AGACATTTCAACAAGTGACTACATACG 59.884 37.037 0.00 0.00 35.39 3.06
5075 5490 8.311650 AGACATTTCAACAAGTGACTACATAC 57.688 34.615 0.00 0.00 35.39 2.39
5076 5491 9.639601 CTAGACATTTCAACAAGTGACTACATA 57.360 33.333 0.00 0.00 35.39 2.29
5077 5492 8.367911 TCTAGACATTTCAACAAGTGACTACAT 58.632 33.333 0.00 0.00 35.39 2.29
5078 5493 7.722363 TCTAGACATTTCAACAAGTGACTACA 58.278 34.615 0.00 0.00 35.39 2.74
5079 5494 8.589335 TTCTAGACATTTCAACAAGTGACTAC 57.411 34.615 0.00 0.00 35.39 2.73
5080 5495 9.607988 TTTTCTAGACATTTCAACAAGTGACTA 57.392 29.630 0.00 0.00 35.39 2.59
5081 5496 8.506168 TTTTCTAGACATTTCAACAAGTGACT 57.494 30.769 0.00 0.00 35.39 3.41
5082 5497 9.010366 GTTTTTCTAGACATTTCAACAAGTGAC 57.990 33.333 0.00 0.00 35.39 3.67
5083 5498 8.735315 TGTTTTTCTAGACATTTCAACAAGTGA 58.265 29.630 0.00 0.00 0.00 3.41
5084 5499 8.909708 TGTTTTTCTAGACATTTCAACAAGTG 57.090 30.769 0.00 0.00 0.00 3.16
5085 5500 9.573133 CTTGTTTTTCTAGACATTTCAACAAGT 57.427 29.630 17.89 0.00 42.27 3.16
5101 5516 8.565416 CCTCCGTTCTTAAATACTTGTTTTTCT 58.435 33.333 0.00 0.00 0.00 2.52
5102 5517 7.806487 CCCTCCGTTCTTAAATACTTGTTTTTC 59.194 37.037 0.00 0.00 0.00 2.29
5103 5518 7.503230 TCCCTCCGTTCTTAAATACTTGTTTTT 59.497 33.333 0.00 0.00 0.00 1.94
5104 5519 6.999871 TCCCTCCGTTCTTAAATACTTGTTTT 59.000 34.615 0.00 0.00 0.00 2.43
5105 5520 6.536447 TCCCTCCGTTCTTAAATACTTGTTT 58.464 36.000 0.00 0.00 0.00 2.83
5106 5521 6.117975 TCCCTCCGTTCTTAAATACTTGTT 57.882 37.500 0.00 0.00 0.00 2.83
5107 5522 5.247792 ACTCCCTCCGTTCTTAAATACTTGT 59.752 40.000 0.00 0.00 0.00 3.16
5108 5523 5.731591 ACTCCCTCCGTTCTTAAATACTTG 58.268 41.667 0.00 0.00 0.00 3.16
5109 5524 7.672122 ATACTCCCTCCGTTCTTAAATACTT 57.328 36.000 0.00 0.00 0.00 2.24
5110 5525 7.672122 AATACTCCCTCCGTTCTTAAATACT 57.328 36.000 0.00 0.00 0.00 2.12
5111 5526 9.473640 CTAAATACTCCCTCCGTTCTTAAATAC 57.526 37.037 0.00 0.00 0.00 1.89
5112 5527 8.645110 CCTAAATACTCCCTCCGTTCTTAAATA 58.355 37.037 0.00 0.00 0.00 1.40
5113 5528 7.346436 TCCTAAATACTCCCTCCGTTCTTAAAT 59.654 37.037 0.00 0.00 0.00 1.40
5114 5529 6.669154 TCCTAAATACTCCCTCCGTTCTTAAA 59.331 38.462 0.00 0.00 0.00 1.52
5115 5530 6.197168 TCCTAAATACTCCCTCCGTTCTTAA 58.803 40.000 0.00 0.00 0.00 1.85
5116 5531 5.769835 TCCTAAATACTCCCTCCGTTCTTA 58.230 41.667 0.00 0.00 0.00 2.10
5117 5532 4.617593 TCCTAAATACTCCCTCCGTTCTT 58.382 43.478 0.00 0.00 0.00 2.52
5118 5533 4.261411 TCCTAAATACTCCCTCCGTTCT 57.739 45.455 0.00 0.00 0.00 3.01
5119 5534 4.161001 TGTTCCTAAATACTCCCTCCGTTC 59.839 45.833 0.00 0.00 0.00 3.95
5120 5535 4.098894 TGTTCCTAAATACTCCCTCCGTT 58.901 43.478 0.00 0.00 0.00 4.44
5121 5536 3.705072 CTGTTCCTAAATACTCCCTCCGT 59.295 47.826 0.00 0.00 0.00 4.69
5122 5537 3.958798 TCTGTTCCTAAATACTCCCTCCG 59.041 47.826 0.00 0.00 0.00 4.63
5123 5538 4.345547 CCTCTGTTCCTAAATACTCCCTCC 59.654 50.000 0.00 0.00 0.00 4.30
5124 5539 5.209659 TCCTCTGTTCCTAAATACTCCCTC 58.790 45.833 0.00 0.00 0.00 4.30
5125 5540 5.222278 TCCTCTGTTCCTAAATACTCCCT 57.778 43.478 0.00 0.00 0.00 4.20
5126 5541 5.425862 ACTTCCTCTGTTCCTAAATACTCCC 59.574 44.000 0.00 0.00 0.00 4.30
5127 5542 6.547930 ACTTCCTCTGTTCCTAAATACTCC 57.452 41.667 0.00 0.00 0.00 3.85
5128 5543 8.296211 ACTACTTCCTCTGTTCCTAAATACTC 57.704 38.462 0.00 0.00 0.00 2.59
5129 5544 8.667592 AACTACTTCCTCTGTTCCTAAATACT 57.332 34.615 0.00 0.00 0.00 2.12
5130 5545 9.722184 AAAACTACTTCCTCTGTTCCTAAATAC 57.278 33.333 0.00 0.00 0.00 1.89
5196 5611 4.260620 CGTCAACCGAGTCAGAAATTTGTT 60.261 41.667 0.00 0.00 39.56 2.83
5283 5698 6.655848 TGTCTATAATTTTGTTTGTACGGCCT 59.344 34.615 0.00 0.00 0.00 5.19
5287 5702 7.480542 GTGCCTGTCTATAATTTTGTTTGTACG 59.519 37.037 0.00 0.00 0.00 3.67
5300 5715 3.071747 TGTGTTGGTGTGCCTGTCTATAA 59.928 43.478 0.00 0.00 35.27 0.98
5303 5718 0.833949 TGTGTTGGTGTGCCTGTCTA 59.166 50.000 0.00 0.00 35.27 2.59
5319 5734 9.016623 CATCACTAAAATGCAACATCTAATGTG 57.983 33.333 0.00 0.00 44.07 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.