Multiple sequence alignment - TraesCS3A01G149000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G149000 chr3A 100.000 3056 0 0 1 3056 132580440 132583495 0.000000e+00 5644
1 TraesCS3A01G149000 chr3D 93.509 2804 118 32 1 2787 124864667 124867423 0.000000e+00 4111
2 TraesCS3A01G149000 chr3D 83.708 178 8 8 2865 3034 124867468 124867632 6.830000e-32 148
3 TraesCS3A01G149000 chr3B 92.918 2810 124 34 3 2773 178926749 178929522 0.000000e+00 4017
4 TraesCS3A01G149000 chr3B 82.258 248 18 11 2808 3048 178929519 178929747 1.120000e-44 191
5 TraesCS3A01G149000 chr7A 81.159 138 20 6 1360 1494 262474586 262474720 4.170000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G149000 chr3A 132580440 132583495 3055 False 5644.0 5644 100.0000 1 3056 1 chr3A.!!$F1 3055
1 TraesCS3A01G149000 chr3D 124864667 124867632 2965 False 2129.5 4111 88.6085 1 3034 2 chr3D.!!$F1 3033
2 TraesCS3A01G149000 chr3B 178926749 178929747 2998 False 2104.0 4017 87.5880 3 3048 2 chr3B.!!$F1 3045

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
396 398 0.096976 CCAGGCAACGCATTTACTCG 59.903 55.0 0.0 0.0 46.39 4.18 F
651 666 0.391661 TCCGAGCCAGAGCATCAAAC 60.392 55.0 0.0 0.0 43.56 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1851 1866 0.677098 CGGAGAGGAGGTCGAAGTCA 60.677 60.0 0.00 0.0 0.00 3.41 R
2486 2524 0.953727 TCGTTTCATTGCAAGCTGCT 59.046 45.0 4.94 0.0 45.31 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 9.277783 TCTCCTTTCTTTTCAGAAACTAAGATG 57.722 33.333 0.00 0.00 42.99 2.90
49 50 7.450074 TCTTTTCAGAAACTAAGATGCTACCA 58.550 34.615 0.00 0.00 0.00 3.25
51 52 8.635765 TTTTCAGAAACTAAGATGCTACCAAT 57.364 30.769 0.00 0.00 0.00 3.16
54 55 9.733556 TTCAGAAACTAAGATGCTACCAATTTA 57.266 29.630 0.00 0.00 0.00 1.40
55 56 9.162764 TCAGAAACTAAGATGCTACCAATTTAC 57.837 33.333 0.00 0.00 0.00 2.01
80 81 2.363038 CCAGATAAACATGGTGGGCATG 59.637 50.000 0.00 0.00 36.22 4.06
81 82 2.034124 AGATAAACATGGTGGGCATGC 58.966 47.619 9.90 9.90 33.61 4.06
82 83 0.746063 ATAAACATGGTGGGCATGCG 59.254 50.000 12.44 0.00 33.61 4.73
83 84 0.322906 TAAACATGGTGGGCATGCGA 60.323 50.000 12.44 0.00 33.61 5.10
84 85 1.876497 AAACATGGTGGGCATGCGAC 61.876 55.000 12.44 10.71 33.61 5.19
85 86 3.879682 CATGGTGGGCATGCGACG 61.880 66.667 12.44 0.00 0.00 5.12
151 153 1.154016 CTCACGTGAGCACCTACCG 60.154 63.158 31.00 6.94 35.13 4.02
155 157 2.380410 CGTGAGCACCTACCGCAAC 61.380 63.158 0.00 0.00 0.00 4.17
213 215 2.202623 CCGCGTGACAGAGTAGGC 60.203 66.667 4.92 0.00 0.00 3.93
393 395 0.243636 AAGCCAGGCAACGCATTTAC 59.756 50.000 15.80 0.00 46.39 2.01
396 398 0.096976 CCAGGCAACGCATTTACTCG 59.903 55.000 0.00 0.00 46.39 4.18
534 549 2.529389 ACGAAAGGCAGGAGGGGT 60.529 61.111 0.00 0.00 0.00 4.95
619 634 2.154462 CGCAATCCTATAAAGGCAGGG 58.846 52.381 0.00 0.00 43.31 4.45
642 657 1.215382 CGATGTGTTCCGAGCCAGA 59.785 57.895 0.00 0.00 0.00 3.86
643 658 0.803768 CGATGTGTTCCGAGCCAGAG 60.804 60.000 0.00 0.00 0.00 3.35
644 659 1.078848 ATGTGTTCCGAGCCAGAGC 60.079 57.895 0.00 0.00 40.32 4.09
645 660 1.830587 ATGTGTTCCGAGCCAGAGCA 61.831 55.000 0.00 0.00 43.56 4.26
646 661 1.078848 GTGTTCCGAGCCAGAGCAT 60.079 57.895 0.00 0.00 43.56 3.79
647 662 1.086634 GTGTTCCGAGCCAGAGCATC 61.087 60.000 0.00 0.00 43.56 3.91
648 663 1.219124 GTTCCGAGCCAGAGCATCA 59.781 57.895 0.00 0.00 43.56 3.07
651 666 0.391661 TCCGAGCCAGAGCATCAAAC 60.392 55.000 0.00 0.00 43.56 2.93
808 823 2.131067 GCCTCCTCTCCTCCTTCCG 61.131 68.421 0.00 0.00 0.00 4.30
849 864 4.667935 TTCGCCTTCCCCTCCCCA 62.668 66.667 0.00 0.00 0.00 4.96
922 937 3.076079 TGGGTTTTACGGGGATTCTTC 57.924 47.619 0.00 0.00 0.00 2.87
1137 1152 1.077429 GCCCAAGATGGTGAGGGTC 60.077 63.158 0.00 0.00 43.42 4.46
1851 1866 3.077556 CTGGCCCCGCTCTACACT 61.078 66.667 0.00 0.00 0.00 3.55
2010 2025 2.266554 CAGGCAGATGAGTTCTTCGAC 58.733 52.381 0.00 0.00 29.93 4.20
2037 2052 3.246699 TCACCGACTTGTTTCAAATCGAC 59.753 43.478 13.39 0.00 34.77 4.20
2057 2072 2.124236 CCTCCCCGTCGTCTAGCT 60.124 66.667 0.00 0.00 0.00 3.32
2064 2079 1.618861 CCGTCGTCTAGCTGAACAAG 58.381 55.000 0.00 0.00 0.00 3.16
2118 2148 6.291849 CGGTCAAATTTTGTTTGCATTCGTTA 60.292 34.615 8.89 0.00 0.00 3.18
2307 2337 2.335011 GGTTTTGTCACCAGCGCC 59.665 61.111 2.29 0.00 36.73 6.53
2356 2386 7.516785 GCAATAGTACCATCGTGTTATGAGTTG 60.517 40.741 0.00 0.00 0.00 3.16
2408 2443 2.787473 TGGATGAATGAAGGCGAAGT 57.213 45.000 0.00 0.00 0.00 3.01
2411 2446 1.672881 GATGAATGAAGGCGAAGTGGG 59.327 52.381 0.00 0.00 0.00 4.61
2418 2456 0.035056 AAGGCGAAGTGGGGAAGATG 60.035 55.000 0.00 0.00 0.00 2.90
2449 2487 8.215926 AGACAGAAGAGTGTATGTATCAGTAC 57.784 38.462 0.00 0.00 0.00 2.73
2452 2490 9.332502 ACAGAAGAGTGTATGTATCAGTACTAG 57.667 37.037 0.00 0.00 0.00 2.57
2456 2494 8.815141 AGAGTGTATGTATCAGTACTAGTACG 57.185 38.462 23.87 18.85 40.80 3.67
2484 2522 3.100817 CGTATGTTGGACCGTAACGTAG 58.899 50.000 0.00 0.00 32.04 3.51
2486 2524 1.614996 TGTTGGACCGTAACGTAGGA 58.385 50.000 10.99 0.00 0.00 2.94
2493 2539 0.172803 CCGTAACGTAGGAGCAGCTT 59.827 55.000 0.00 0.00 0.00 3.74
2627 2673 1.485895 CAATTAAATGTGGGGCAGGGG 59.514 52.381 0.00 0.00 0.00 4.79
2628 2674 0.031212 ATTAAATGTGGGGCAGGGGG 60.031 55.000 0.00 0.00 0.00 5.40
2629 2675 2.813949 TTAAATGTGGGGCAGGGGGC 62.814 60.000 0.00 0.00 43.74 5.80
2659 2705 1.951130 CAGCCGCAGCAGTATACCG 60.951 63.158 0.00 0.00 43.56 4.02
2660 2706 2.106332 GCCGCAGCAGTATACCGT 59.894 61.111 0.00 0.00 39.53 4.83
2664 2711 1.069258 GCAGCAGTATACCGTCCCC 59.931 63.158 0.00 0.00 0.00 4.81
2676 2723 1.422402 ACCGTCCCCAACATTAACTGT 59.578 47.619 0.00 0.00 40.84 3.55
2701 2749 2.125552 GGGAAATTTGCTGGCGCC 60.126 61.111 22.73 22.73 34.43 6.53
2702 2750 2.506881 GGAAATTTGCTGGCGCCG 60.507 61.111 23.90 17.75 34.43 6.46
2769 2818 6.229733 TGGAAAATTAAGTTGGATTTGCTGG 58.770 36.000 0.00 0.00 0.00 4.85
2770 2819 6.183361 TGGAAAATTAAGTTGGATTTGCTGGT 60.183 34.615 0.00 0.00 0.00 4.00
2771 2820 7.015682 TGGAAAATTAAGTTGGATTTGCTGGTA 59.984 33.333 0.00 0.00 0.00 3.25
2772 2821 7.330946 GGAAAATTAAGTTGGATTTGCTGGTAC 59.669 37.037 0.00 0.00 0.00 3.34
2773 2822 6.909550 AATTAAGTTGGATTTGCTGGTACA 57.090 33.333 0.00 0.00 0.00 2.90
2774 2823 7.480760 AATTAAGTTGGATTTGCTGGTACAT 57.519 32.000 0.00 0.00 38.20 2.29
2775 2824 8.588290 AATTAAGTTGGATTTGCTGGTACATA 57.412 30.769 0.00 0.00 38.20 2.29
2790 2839 7.067859 TGCTGGTACATAGTACGAGATTAGTTT 59.932 37.037 19.15 0.00 38.20 2.66
2791 2840 7.919621 GCTGGTACATAGTACGAGATTAGTTTT 59.080 37.037 19.15 0.00 38.20 2.43
2792 2841 9.798994 CTGGTACATAGTACGAGATTAGTTTTT 57.201 33.333 12.21 0.00 38.20 1.94
2818 2867 7.884816 TTTTTGAGGAACTGTACGAGATTAG 57.115 36.000 0.00 0.00 41.55 1.73
2820 2869 5.562506 TGAGGAACTGTACGAGATTAGTG 57.437 43.478 0.00 0.00 41.55 2.74
2823 2872 3.181478 GGAACTGTACGAGATTAGTGGGG 60.181 52.174 0.00 0.00 0.00 4.96
2824 2873 2.385803 ACTGTACGAGATTAGTGGGGG 58.614 52.381 0.00 0.00 0.00 5.40
2850 2899 1.001633 TCCGAGTCTTGGGCTGTAAAC 59.998 52.381 6.27 0.00 0.00 2.01
2851 2900 1.439679 CGAGTCTTGGGCTGTAAACC 58.560 55.000 0.00 0.00 0.00 3.27
2853 2902 2.427506 GAGTCTTGGGCTGTAAACCAG 58.572 52.381 0.00 0.00 44.53 4.00
2855 2904 2.039084 AGTCTTGGGCTGTAAACCAGAG 59.961 50.000 0.00 0.00 44.49 3.35
2856 2905 2.038557 GTCTTGGGCTGTAAACCAGAGA 59.961 50.000 0.00 0.00 44.49 3.10
2857 2906 2.708861 TCTTGGGCTGTAAACCAGAGAA 59.291 45.455 0.00 0.00 44.49 2.87
2859 2908 1.351017 TGGGCTGTAAACCAGAGAAGG 59.649 52.381 0.00 0.00 44.49 3.46
2860 2909 1.340114 GGGCTGTAAACCAGAGAAGGG 60.340 57.143 0.00 0.00 44.49 3.95
2861 2910 1.628846 GGCTGTAAACCAGAGAAGGGA 59.371 52.381 0.00 0.00 44.49 4.20
2862 2911 2.355209 GGCTGTAAACCAGAGAAGGGAG 60.355 54.545 0.00 0.00 44.49 4.30
2863 2912 2.567615 GCTGTAAACCAGAGAAGGGAGA 59.432 50.000 0.00 0.00 44.49 3.71
2864 2913 3.198853 GCTGTAAACCAGAGAAGGGAGAT 59.801 47.826 0.00 0.00 44.49 2.75
2865 2914 4.764172 CTGTAAACCAGAGAAGGGAGATG 58.236 47.826 0.00 0.00 44.49 2.90
2866 2915 3.519510 TGTAAACCAGAGAAGGGAGATGG 59.480 47.826 0.00 0.00 37.07 3.51
2867 2916 2.649742 AACCAGAGAAGGGAGATGGA 57.350 50.000 0.00 0.00 34.99 3.41
2868 2917 2.885388 ACCAGAGAAGGGAGATGGAT 57.115 50.000 0.00 0.00 34.99 3.41
2915 2970 4.452733 GGTCAAGAGTCGGGCGGG 62.453 72.222 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 146 2.995574 AGCGGAGTTGCGGTAGGT 60.996 61.111 0.00 0.00 40.67 3.08
151 153 2.661866 ACGTGTCAGCGGAGTTGC 60.662 61.111 0.00 0.00 39.08 4.17
155 157 4.742201 CCCCACGTGTCAGCGGAG 62.742 72.222 15.65 0.00 35.98 4.63
177 179 2.430921 CACTCGACTGGCGTGGAC 60.431 66.667 9.96 0.00 41.80 4.02
213 215 2.117051 GGTCAGGGGAGTAAAGGGTAG 58.883 57.143 0.00 0.00 0.00 3.18
248 250 1.654105 CTAGTAGCGGCTCAACGTTTG 59.346 52.381 5.39 0.00 35.98 2.93
393 395 4.259690 CGTCGGTAATTTTTAGAAGGCGAG 60.260 45.833 0.00 0.00 0.00 5.03
396 398 5.535043 TTCGTCGGTAATTTTTAGAAGGC 57.465 39.130 0.00 0.00 0.00 4.35
534 549 6.951778 CCCCCTGTTTTCTTCCTTTTCTATTA 59.048 38.462 0.00 0.00 0.00 0.98
642 657 1.238439 CGTCCTGTTGGTTTGATGCT 58.762 50.000 0.00 0.00 34.23 3.79
643 658 0.387239 GCGTCCTGTTGGTTTGATGC 60.387 55.000 0.00 0.00 33.15 3.91
644 659 0.240945 GGCGTCCTGTTGGTTTGATG 59.759 55.000 0.00 0.00 34.23 3.07
645 660 1.234615 CGGCGTCCTGTTGGTTTGAT 61.235 55.000 0.00 0.00 34.23 2.57
646 661 1.890041 CGGCGTCCTGTTGGTTTGA 60.890 57.895 0.00 0.00 34.23 2.69
647 662 2.637025 CGGCGTCCTGTTGGTTTG 59.363 61.111 0.00 0.00 34.23 2.93
648 663 3.284449 GCGGCGTCCTGTTGGTTT 61.284 61.111 9.37 0.00 34.23 3.27
706 721 3.337909 AGAAGGAATGGGGAATGGAGTTT 59.662 43.478 0.00 0.00 0.00 2.66
749 764 3.582662 TTTTTGGGGGCGGAGAGA 58.417 55.556 0.00 0.00 0.00 3.10
922 937 0.107361 CGGCCTACCTAAAACCCCTG 60.107 60.000 0.00 0.00 0.00 4.45
1112 1127 3.207669 CCATCTTGGGCTGCTCGC 61.208 66.667 0.00 0.00 32.67 5.03
1203 1218 1.517257 CTCCTGGACGTAGCGCTTG 60.517 63.158 18.68 12.05 0.00 4.01
1239 1254 1.293498 CTCCACCTTCACCTGGACG 59.707 63.158 0.00 0.00 32.84 4.79
1248 1263 2.579738 GCCGACTCCTCCACCTTC 59.420 66.667 0.00 0.00 0.00 3.46
1851 1866 0.677098 CGGAGAGGAGGTCGAAGTCA 60.677 60.000 0.00 0.00 0.00 3.41
1995 2010 3.440522 TGATGTCGTCGAAGAACTCATCT 59.559 43.478 21.84 0.00 39.69 2.90
1998 2013 2.351447 GGTGATGTCGTCGAAGAACTCA 60.351 50.000 1.62 6.34 39.69 3.41
2010 2025 2.131972 TGAAACAAGTCGGTGATGTCG 58.868 47.619 0.00 0.00 0.00 4.35
2037 2052 4.133373 TAGACGACGGGGAGGGGG 62.133 72.222 0.00 0.00 0.00 5.40
2050 2065 6.419771 GTGTTTTACACTTGTTCAGCTAGAC 58.580 40.000 0.00 0.00 45.27 2.59
2135 2165 9.527157 TCTCTCTTCTCTCTCTAGAAATCAAAA 57.473 33.333 0.00 0.00 35.14 2.44
2136 2166 9.177608 CTCTCTCTTCTCTCTCTAGAAATCAAA 57.822 37.037 0.00 0.00 35.14 2.69
2137 2167 8.328758 ACTCTCTCTTCTCTCTCTAGAAATCAA 58.671 37.037 0.00 0.00 35.14 2.57
2138 2168 7.861629 ACTCTCTCTTCTCTCTCTAGAAATCA 58.138 38.462 0.00 0.00 35.14 2.57
2140 2170 9.784531 CATACTCTCTCTTCTCTCTCTAGAAAT 57.215 37.037 0.00 0.00 35.14 2.17
2307 2337 6.257849 TGCTAATTACTGATAACTTGGCTTCG 59.742 38.462 0.00 0.00 0.00 3.79
2339 2369 5.801350 ATGTTCAACTCATAACACGATGG 57.199 39.130 0.00 0.00 38.35 3.51
2391 2423 1.672881 CCCACTTCGCCTTCATTCATC 59.327 52.381 0.00 0.00 0.00 2.92
2408 2443 3.909995 TCTGTCTTTTCTCATCTTCCCCA 59.090 43.478 0.00 0.00 0.00 4.96
2411 2446 6.368516 CACTCTTCTGTCTTTTCTCATCTTCC 59.631 42.308 0.00 0.00 0.00 3.46
2418 2456 9.296400 GATACATACACTCTTCTGTCTTTTCTC 57.704 37.037 0.00 0.00 0.00 2.87
2456 2494 2.159572 ACGGTCCAACATACGTACGTAC 60.160 50.000 28.99 17.24 37.85 3.67
2467 2505 1.541147 CTCCTACGTTACGGTCCAACA 59.459 52.381 10.20 0.00 0.00 3.33
2484 2522 1.706443 GTTTCATTGCAAGCTGCTCC 58.294 50.000 4.94 0.00 45.31 4.70
2486 2524 0.953727 TCGTTTCATTGCAAGCTGCT 59.046 45.000 4.94 0.00 45.31 4.24
2493 2539 2.127421 GCGCGTCGTTTCATTGCA 60.127 55.556 8.43 0.00 0.00 4.08
2653 2699 4.470664 ACAGTTAATGTTGGGGACGGTATA 59.529 41.667 0.00 0.00 39.96 1.47
2659 2705 8.194769 CCAAATAATACAGTTAATGTTGGGGAC 58.805 37.037 0.00 0.00 39.96 4.46
2660 2706 7.343316 CCCAAATAATACAGTTAATGTTGGGGA 59.657 37.037 9.38 0.00 44.07 4.81
2676 2723 5.355596 CGCCAGCAAATTTCCCAAATAATA 58.644 37.500 0.00 0.00 0.00 0.98
2702 2750 3.999769 TCTCGCAGTATATACGATTCGC 58.000 45.455 5.86 5.89 34.94 4.70
2705 2753 9.343103 CAAGTAAATCTCGCAGTATATACGATT 57.657 33.333 7.23 7.08 34.94 3.34
2794 2843 7.384115 CACTAATCTCGTACAGTTCCTCAAAAA 59.616 37.037 0.00 0.00 0.00 1.94
2795 2844 6.866770 CACTAATCTCGTACAGTTCCTCAAAA 59.133 38.462 0.00 0.00 0.00 2.44
2796 2845 6.387465 CACTAATCTCGTACAGTTCCTCAAA 58.613 40.000 0.00 0.00 0.00 2.69
2797 2846 5.105877 CCACTAATCTCGTACAGTTCCTCAA 60.106 44.000 0.00 0.00 0.00 3.02
2798 2847 4.398358 CCACTAATCTCGTACAGTTCCTCA 59.602 45.833 0.00 0.00 0.00 3.86
2799 2848 4.202030 CCCACTAATCTCGTACAGTTCCTC 60.202 50.000 0.00 0.00 0.00 3.71
2800 2849 3.700038 CCCACTAATCTCGTACAGTTCCT 59.300 47.826 0.00 0.00 0.00 3.36
2801 2850 3.181478 CCCCACTAATCTCGTACAGTTCC 60.181 52.174 0.00 0.00 0.00 3.62
2802 2851 3.181478 CCCCCACTAATCTCGTACAGTTC 60.181 52.174 0.00 0.00 0.00 3.01
2803 2852 2.764572 CCCCCACTAATCTCGTACAGTT 59.235 50.000 0.00 0.00 0.00 3.16
2804 2853 2.024655 TCCCCCACTAATCTCGTACAGT 60.025 50.000 0.00 0.00 0.00 3.55
2805 2854 2.662866 TCCCCCACTAATCTCGTACAG 58.337 52.381 0.00 0.00 0.00 2.74
2806 2855 2.762327 GTTCCCCCACTAATCTCGTACA 59.238 50.000 0.00 0.00 0.00 2.90
2807 2856 3.029570 AGTTCCCCCACTAATCTCGTAC 58.970 50.000 0.00 0.00 0.00 3.67
2818 2867 0.321387 GACTCGGAAAGTTCCCCCAC 60.321 60.000 4.48 0.00 44.67 4.61
2820 2869 0.691332 AAGACTCGGAAAGTTCCCCC 59.309 55.000 4.48 0.00 44.67 5.40
2823 2872 1.809684 CCCAAGACTCGGAAAGTTCC 58.190 55.000 0.00 0.00 44.05 3.62
2824 2873 1.157585 GCCCAAGACTCGGAAAGTTC 58.842 55.000 0.00 0.00 38.74 3.01
2850 2899 1.698532 CCATCCATCTCCCTTCTCTGG 59.301 57.143 0.00 0.00 0.00 3.86
2851 2900 1.072015 GCCATCCATCTCCCTTCTCTG 59.928 57.143 0.00 0.00 0.00 3.35
2853 2902 0.034616 CGCCATCCATCTCCCTTCTC 59.965 60.000 0.00 0.00 0.00 2.87
2855 2904 1.072159 CCGCCATCCATCTCCCTTC 59.928 63.158 0.00 0.00 0.00 3.46
2856 2905 3.125376 GCCGCCATCCATCTCCCTT 62.125 63.158 0.00 0.00 0.00 3.95
2857 2906 3.564218 GCCGCCATCCATCTCCCT 61.564 66.667 0.00 0.00 0.00 4.20
2859 2908 2.281345 CAGCCGCCATCCATCTCC 60.281 66.667 0.00 0.00 0.00 3.71
2860 2909 2.281345 CCAGCCGCCATCCATCTC 60.281 66.667 0.00 0.00 0.00 2.75
2861 2910 4.575973 GCCAGCCGCCATCCATCT 62.576 66.667 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.