Multiple sequence alignment - TraesCS3A01G148400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G148400 chr3A 100.000 5678 0 0 1 5678 131402270 131407947 0.000000e+00 10486
1 TraesCS3A01G148400 chr3A 86.218 595 72 10 5082 5675 159354832 159355417 2.230000e-178 636
2 TraesCS3A01G148400 chr3D 91.878 4999 208 66 61 4948 123609384 123604473 0.000000e+00 6800
3 TraesCS3A01G148400 chr3D 86.364 594 73 8 5082 5675 141185192 141185777 4.800000e-180 641
4 TraesCS3A01G148400 chr3D 86.256 211 22 5 3220 3430 123606663 123606460 7.400000e-54 222
5 TraesCS3A01G148400 chr3B 95.387 2016 65 12 2938 4952 176920065 176918077 0.000000e+00 3182
6 TraesCS3A01G148400 chr3B 94.394 1855 74 12 821 2656 176922198 176920355 0.000000e+00 2822
7 TraesCS3A01G148400 chr3B 87.322 631 72 7 5050 5675 132724063 132724690 0.000000e+00 715
8 TraesCS3A01G148400 chr3B 87.025 632 71 11 5052 5678 71217906 71217281 0.000000e+00 702
9 TraesCS3A01G148400 chr3B 80.260 770 50 35 46 751 176923188 176922457 2.380000e-133 486
10 TraesCS3A01G148400 chr3B 96.350 137 5 0 2800 2936 176920365 176920229 5.720000e-55 226
11 TraesCS3A01G148400 chr2D 89.331 628 60 6 5050 5675 451872971 451873593 0.000000e+00 782
12 TraesCS3A01G148400 chr4D 89.172 628 62 5 5051 5675 385673930 385674554 0.000000e+00 778
13 TraesCS3A01G148400 chr4D 87.603 121 15 0 4399 4519 301299481 301299361 2.130000e-29 141
14 TraesCS3A01G148400 chr4D 84.821 112 17 0 4401 4512 403396521 403396410 4.650000e-21 113
15 TraesCS3A01G148400 chr5A 91.119 563 48 2 5090 5652 268586658 268586098 0.000000e+00 761
16 TraesCS3A01G148400 chr6B 86.591 619 70 9 5050 5664 71846492 71845883 0.000000e+00 671
17 TraesCS3A01G148400 chr7A 88.099 563 61 6 5119 5678 76116337 76115778 0.000000e+00 664
18 TraesCS3A01G148400 chr4A 86.777 121 16 0 4399 4519 180397963 180398083 9.920000e-28 135
19 TraesCS3A01G148400 chr4A 80.420 143 28 0 4403 4545 60926279 60926137 6.010000e-20 110
20 TraesCS3A01G148400 chr2B 92.958 71 2 2 904 971 496088784 496088854 3.620000e-17 100
21 TraesCS3A01G148400 chr4B 85.263 95 14 0 4418 4512 500253403 500253309 1.300000e-16 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G148400 chr3A 131402270 131407947 5677 False 10486 10486 100.00000 1 5678 1 chr3A.!!$F1 5677
1 TraesCS3A01G148400 chr3A 159354832 159355417 585 False 636 636 86.21800 5082 5675 1 chr3A.!!$F2 593
2 TraesCS3A01G148400 chr3D 123604473 123609384 4911 True 3511 6800 89.06700 61 4948 2 chr3D.!!$R1 4887
3 TraesCS3A01G148400 chr3D 141185192 141185777 585 False 641 641 86.36400 5082 5675 1 chr3D.!!$F1 593
4 TraesCS3A01G148400 chr3B 176918077 176923188 5111 True 1679 3182 91.59775 46 4952 4 chr3B.!!$R2 4906
5 TraesCS3A01G148400 chr3B 132724063 132724690 627 False 715 715 87.32200 5050 5675 1 chr3B.!!$F1 625
6 TraesCS3A01G148400 chr3B 71217281 71217906 625 True 702 702 87.02500 5052 5678 1 chr3B.!!$R1 626
7 TraesCS3A01G148400 chr2D 451872971 451873593 622 False 782 782 89.33100 5050 5675 1 chr2D.!!$F1 625
8 TraesCS3A01G148400 chr4D 385673930 385674554 624 False 778 778 89.17200 5051 5675 1 chr4D.!!$F1 624
9 TraesCS3A01G148400 chr5A 268586098 268586658 560 True 761 761 91.11900 5090 5652 1 chr5A.!!$R1 562
10 TraesCS3A01G148400 chr6B 71845883 71846492 609 True 671 671 86.59100 5050 5664 1 chr6B.!!$R1 614
11 TraesCS3A01G148400 chr7A 76115778 76116337 559 True 664 664 88.09900 5119 5678 1 chr7A.!!$R1 559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.036765 CCATGCATGCAGCCTTTGTT 60.037 50.000 26.69 3.09 44.83 2.83 F
141 150 0.038159 CACGGGAGAGCGAGTTTTCT 60.038 55.000 0.00 0.00 0.00 2.52 F
494 551 0.103026 CGAGATCGAAGCATGGACCA 59.897 55.000 0.00 0.00 43.02 4.02 F
1450 1773 0.737715 CCTCTCCTTCAACGCCTTCG 60.738 60.000 0.00 0.00 42.43 3.79 F
2475 2806 1.040646 CCTGGGCAAGATAGCGAGTA 58.959 55.000 0.00 0.00 34.64 2.59 F
2531 2864 2.030007 TGTTCTTGCTGTTGCTAATGGC 60.030 45.455 0.00 0.00 40.48 4.40 F
3766 4397 1.264288 GCTAGTGTTGGTGTTCACTGC 59.736 52.381 7.88 6.18 43.46 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1752 2075 1.257936 CCGACGATAATGGCAAGAACG 59.742 52.381 0.00 0.00 0.00 3.95 R
2308 2631 3.573538 TGCAAATTCATTAGCCACACTGT 59.426 39.130 0.00 0.00 0.00 3.55 R
2433 2764 3.128242 GGACAATGGCAATCTTCTCAGTG 59.872 47.826 0.00 0.00 0.00 3.66 R
2936 3397 1.000385 ACCAAACATGCCATGTGAACG 60.000 47.619 11.79 2.25 44.07 3.95 R
3680 4311 1.461127 GCTAGTGACAAAGCTCCAACG 59.539 52.381 3.10 0.00 35.80 4.10 R
4326 4958 1.604879 AGTGAGGAGCTCGAGCACA 60.605 57.895 36.87 25.98 45.16 4.57 R
5038 5680 0.034896 CTACCTGCGTTTCTGTGGGT 59.965 55.000 0.00 0.00 0.00 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.515286 ACGCTCCATGCATGCAGC 61.515 61.111 29.24 29.24 43.06 5.25
18 19 4.266070 CGCTCCATGCATGCAGCC 62.266 66.667 31.78 17.08 44.83 4.85
19 20 2.833582 GCTCCATGCATGCAGCCT 60.834 61.111 28.94 6.48 44.83 4.58
20 21 2.423898 GCTCCATGCATGCAGCCTT 61.424 57.895 28.94 6.06 44.83 4.35
21 22 1.956629 GCTCCATGCATGCAGCCTTT 61.957 55.000 28.94 5.62 44.83 3.11
22 23 0.179111 CTCCATGCATGCAGCCTTTG 60.179 55.000 26.69 18.03 44.83 2.77
23 24 0.901114 TCCATGCATGCAGCCTTTGT 60.901 50.000 26.69 3.94 44.83 2.83
24 25 0.036765 CCATGCATGCAGCCTTTGTT 60.037 50.000 26.69 3.09 44.83 2.83
25 26 1.355971 CATGCATGCAGCCTTTGTTC 58.644 50.000 26.69 0.00 44.83 3.18
26 27 0.970640 ATGCATGCAGCCTTTGTTCA 59.029 45.000 26.69 0.00 44.83 3.18
27 28 0.751452 TGCATGCAGCCTTTGTTCAA 59.249 45.000 18.46 0.00 44.83 2.69
28 29 1.142474 GCATGCAGCCTTTGTTCAAC 58.858 50.000 14.21 0.00 37.23 3.18
29 30 1.538634 GCATGCAGCCTTTGTTCAACA 60.539 47.619 14.21 0.00 37.23 3.33
30 31 2.868839 GCATGCAGCCTTTGTTCAACAT 60.869 45.455 14.21 0.00 37.23 2.71
31 32 3.395639 CATGCAGCCTTTGTTCAACATT 58.604 40.909 0.00 0.00 0.00 2.71
32 33 3.096489 TGCAGCCTTTGTTCAACATTC 57.904 42.857 0.00 0.00 0.00 2.67
33 34 2.429971 TGCAGCCTTTGTTCAACATTCA 59.570 40.909 0.00 0.00 0.00 2.57
34 35 3.118847 TGCAGCCTTTGTTCAACATTCAA 60.119 39.130 0.00 0.00 0.00 2.69
35 36 3.870419 GCAGCCTTTGTTCAACATTCAAA 59.130 39.130 0.00 0.00 0.00 2.69
36 37 4.332268 GCAGCCTTTGTTCAACATTCAAAA 59.668 37.500 0.00 0.00 32.06 2.44
37 38 5.163774 GCAGCCTTTGTTCAACATTCAAAAA 60.164 36.000 0.00 0.00 32.06 1.94
59 60 6.578163 AAAATAAAAATGCATGCAGCCTTT 57.422 29.167 26.69 23.32 44.83 3.11
63 64 2.554370 AATGCATGCAGCCTTTGTTT 57.446 40.000 26.69 9.81 44.83 2.83
68 69 2.032636 GCATGCAGCCTTTGTTTGTTTC 60.033 45.455 14.21 0.00 37.23 2.78
103 104 1.801178 GTCTACTGCTGCTTGTGAACC 59.199 52.381 0.00 0.00 0.00 3.62
107 108 0.313043 CTGCTGCTTGTGAACCTTGG 59.687 55.000 0.00 0.00 0.00 3.61
115 116 0.751277 TGTGAACCTTGGCAGTGGTG 60.751 55.000 13.67 0.00 36.57 4.17
131 132 4.020617 TGCTTGGGCACGGGAGAG 62.021 66.667 0.00 0.00 44.28 3.20
141 150 0.038159 CACGGGAGAGCGAGTTTTCT 60.038 55.000 0.00 0.00 0.00 2.52
163 172 3.254014 CTTGTTCGCCGTGGCCAAG 62.254 63.158 7.24 10.19 37.98 3.61
212 228 6.909550 TTGTAAAAAGACATGTTAGGGCAT 57.090 33.333 0.00 0.00 0.00 4.40
231 258 6.149474 AGGGCATGTATTAAAGCGTATCATTC 59.851 38.462 0.00 0.00 0.00 2.67
232 259 6.149474 GGGCATGTATTAAAGCGTATCATTCT 59.851 38.462 0.00 0.00 0.00 2.40
251 278 5.670792 TTCTCACATGGTTAACCGAGTAT 57.329 39.130 19.65 4.79 39.43 2.12
253 280 6.387041 TCTCACATGGTTAACCGAGTATAG 57.613 41.667 19.65 17.75 39.43 1.31
260 287 5.522456 TGGTTAACCGAGTATAGTAATGCG 58.478 41.667 19.65 0.00 39.43 4.73
287 314 8.798153 GCTTCGTTTGAACAAGAATATTTATGG 58.202 33.333 6.43 0.00 0.00 2.74
288 315 8.682128 TTCGTTTGAACAAGAATATTTATGGC 57.318 30.769 6.43 0.00 0.00 4.40
289 316 7.821652 TCGTTTGAACAAGAATATTTATGGCA 58.178 30.769 0.00 0.00 0.00 4.92
290 317 7.967854 TCGTTTGAACAAGAATATTTATGGCAG 59.032 33.333 0.00 0.00 0.00 4.85
291 318 7.220683 CGTTTGAACAAGAATATTTATGGCAGG 59.779 37.037 0.00 0.00 0.00 4.85
292 319 6.713762 TGAACAAGAATATTTATGGCAGGG 57.286 37.500 0.00 0.00 0.00 4.45
295 322 4.829492 ACAAGAATATTTATGGCAGGGAGC 59.171 41.667 0.00 0.00 44.65 4.70
318 345 3.507597 TCGAATCACGACCCAAGTG 57.492 52.632 0.00 0.00 46.45 3.16
319 346 0.669318 TCGAATCACGACCCAAGTGC 60.669 55.000 0.00 0.00 46.45 4.40
321 348 1.523758 GAATCACGACCCAAGTGCTT 58.476 50.000 0.00 0.00 39.31 3.91
323 350 0.670546 ATCACGACCCAAGTGCTTCG 60.671 55.000 0.00 0.00 39.31 3.79
324 351 1.300620 CACGACCCAAGTGCTTCGA 60.301 57.895 0.00 0.00 35.45 3.71
326 353 0.179067 ACGACCCAAGTGCTTCGAAA 60.179 50.000 0.00 0.00 35.45 3.46
332 359 2.069273 CCAAGTGCTTCGAAACGATCT 58.931 47.619 0.00 0.00 35.23 2.75
335 362 4.527564 CAAGTGCTTCGAAACGATCTTTT 58.472 39.130 0.00 0.00 35.23 2.27
361 388 1.672356 CCGGTGACTGCTTTCCAGG 60.672 63.158 0.00 0.00 46.14 4.45
362 389 1.672356 CGGTGACTGCTTTCCAGGG 60.672 63.158 0.00 0.00 46.14 4.45
363 390 1.761174 GGTGACTGCTTTCCAGGGA 59.239 57.895 0.00 0.00 46.14 4.20
364 391 0.329596 GGTGACTGCTTTCCAGGGAT 59.670 55.000 0.00 0.00 46.14 3.85
365 392 1.559682 GGTGACTGCTTTCCAGGGATA 59.440 52.381 0.00 0.00 46.14 2.59
366 393 2.420687 GGTGACTGCTTTCCAGGGATAG 60.421 54.545 1.85 1.85 46.14 2.08
375 402 2.047844 CAGGGATAGGCGATGCGG 60.048 66.667 0.00 0.00 0.00 5.69
453 495 3.181487 CCTTATCAAAATCCCAACGGCAG 60.181 47.826 0.00 0.00 0.00 4.85
459 501 4.396790 TCAAAATCCCAACGGCAGTAATAC 59.603 41.667 0.00 0.00 0.00 1.89
470 512 5.023551 CGGCAGTAATACCGTACTACTAC 57.976 47.826 0.00 0.00 44.46 2.73
488 545 4.382291 ACTACTAGACGAGATCGAAGCAT 58.618 43.478 9.58 0.00 43.02 3.79
493 550 0.103208 ACGAGATCGAAGCATGGACC 59.897 55.000 9.58 0.00 43.02 4.46
494 551 0.103026 CGAGATCGAAGCATGGACCA 59.897 55.000 0.00 0.00 43.02 4.02
495 552 1.471501 CGAGATCGAAGCATGGACCAA 60.472 52.381 0.00 0.00 43.02 3.67
569 657 2.743928 GAAGGCCGTCTGGTGCTG 60.744 66.667 11.87 0.00 37.67 4.41
709 797 3.807538 CAGTCCGCACATGCAGCC 61.808 66.667 4.49 0.00 42.21 4.85
807 899 2.936032 GCCAACTCCCCAGACCCT 60.936 66.667 0.00 0.00 0.00 4.34
808 900 2.972819 GCCAACTCCCCAGACCCTC 61.973 68.421 0.00 0.00 0.00 4.30
809 901 1.229658 CCAACTCCCCAGACCCTCT 60.230 63.158 0.00 0.00 0.00 3.69
811 903 1.305381 AACTCCCCAGACCCTCTCG 60.305 63.158 0.00 0.00 0.00 4.04
842 1119 2.981909 CCCACACCACAGCAGCAG 60.982 66.667 0.00 0.00 0.00 4.24
843 1120 3.667282 CCACACCACAGCAGCAGC 61.667 66.667 0.00 0.00 42.56 5.25
989 1300 2.301346 CAAGGGAGAGAGAGAGAGAGC 58.699 57.143 0.00 0.00 0.00 4.09
1450 1773 0.737715 CCTCTCCTTCAACGCCTTCG 60.738 60.000 0.00 0.00 42.43 3.79
1456 1779 3.869473 TTCAACGCCTTCGACGGGG 62.869 63.158 21.48 21.48 42.28 5.73
1826 2149 3.774616 TGCTGATAGCCTTCTGCAG 57.225 52.632 7.63 7.63 43.09 4.41
1977 2300 3.103911 CCGTCACTGGCGTTCGAC 61.104 66.667 1.76 0.00 0.00 4.20
2097 2420 1.220477 GAGGCTCAAGGAGGTCAGC 59.780 63.158 10.25 0.00 0.00 4.26
2299 2622 5.297776 CCATGTCACTTTCACAGTTTCTTCT 59.702 40.000 0.00 0.00 30.92 2.85
2300 2623 6.183360 CCATGTCACTTTCACAGTTTCTTCTT 60.183 38.462 0.00 0.00 30.92 2.52
2301 2624 6.422776 TGTCACTTTCACAGTTTCTTCTTC 57.577 37.500 0.00 0.00 30.92 2.87
2304 2627 5.065218 TCACTTTCACAGTTTCTTCTTCAGC 59.935 40.000 0.00 0.00 30.92 4.26
2308 2631 5.276461 TCACAGTTTCTTCTTCAGCACTA 57.724 39.130 0.00 0.00 0.00 2.74
2309 2632 5.050490 TCACAGTTTCTTCTTCAGCACTAC 58.950 41.667 0.00 0.00 0.00 2.73
2353 2676 8.136800 TGCAATTTGTAGCTGTATGATAAATGG 58.863 33.333 0.00 0.00 0.00 3.16
2373 2700 4.930963 TGGCATTGTTTGTTAGAACTGTG 58.069 39.130 0.00 0.00 0.00 3.66
2433 2764 3.614870 GCATCCGATAAAATGGGAATGGC 60.615 47.826 0.00 0.00 40.67 4.40
2474 2805 1.690219 CCCTGGGCAAGATAGCGAGT 61.690 60.000 0.00 0.00 34.64 4.18
2475 2806 1.040646 CCTGGGCAAGATAGCGAGTA 58.959 55.000 0.00 0.00 34.64 2.59
2531 2864 2.030007 TGTTCTTGCTGTTGCTAATGGC 60.030 45.455 0.00 0.00 40.48 4.40
2552 2885 4.094887 GGCTACTGTCATGTGTTATGGTTG 59.905 45.833 0.00 0.00 0.00 3.77
2609 2943 5.067805 AGGACTTTTGTGGAAACAACTCATC 59.932 40.000 0.00 0.00 46.06 2.92
2663 3124 9.896645 TTCTCAGATTATATCTTTTGTCTTGCT 57.103 29.630 0.00 0.00 37.58 3.91
2664 3125 9.896645 TCTCAGATTATATCTTTTGTCTTGCTT 57.103 29.630 0.00 0.00 37.58 3.91
2665 3126 9.932699 CTCAGATTATATCTTTTGTCTTGCTTG 57.067 33.333 0.00 0.00 37.58 4.01
2666 3127 9.671279 TCAGATTATATCTTTTGTCTTGCTTGA 57.329 29.630 0.00 0.00 37.58 3.02
2673 3134 7.992754 ATCTTTTGTCTTGCTTGAATAGTCT 57.007 32.000 0.00 0.00 0.00 3.24
2675 3136 8.311650 TCTTTTGTCTTGCTTGAATAGTCTAC 57.688 34.615 0.00 0.00 0.00 2.59
2676 3137 8.150945 TCTTTTGTCTTGCTTGAATAGTCTACT 58.849 33.333 0.00 0.00 0.00 2.57
2677 3138 8.677148 TTTTGTCTTGCTTGAATAGTCTACTT 57.323 30.769 0.00 0.00 0.00 2.24
2678 3139 7.658179 TTGTCTTGCTTGAATAGTCTACTTG 57.342 36.000 0.00 0.00 0.00 3.16
2679 3140 6.759272 TGTCTTGCTTGAATAGTCTACTTGT 58.241 36.000 0.00 0.00 0.00 3.16
2680 3141 6.646653 TGTCTTGCTTGAATAGTCTACTTGTG 59.353 38.462 0.00 0.00 0.00 3.33
2681 3142 6.868864 GTCTTGCTTGAATAGTCTACTTGTGA 59.131 38.462 0.00 0.00 0.00 3.58
2682 3143 6.868864 TCTTGCTTGAATAGTCTACTTGTGAC 59.131 38.462 0.00 0.00 34.88 3.67
2683 3144 6.346477 TGCTTGAATAGTCTACTTGTGACT 57.654 37.500 0.00 0.00 45.48 3.41
2684 3145 7.462571 TGCTTGAATAGTCTACTTGTGACTA 57.537 36.000 6.14 6.14 46.75 2.59
2685 3146 7.539436 TGCTTGAATAGTCTACTTGTGACTAG 58.461 38.462 9.08 0.00 46.17 2.57
2686 3147 7.176865 TGCTTGAATAGTCTACTTGTGACTAGT 59.823 37.037 4.90 4.90 46.17 2.57
2687 3148 8.030106 GCTTGAATAGTCTACTTGTGACTAGTT 58.970 37.037 4.82 0.00 46.17 2.24
2688 3149 9.915629 CTTGAATAGTCTACTTGTGACTAGTTT 57.084 33.333 4.82 0.00 46.17 2.66
2690 3151 9.909644 TGAATAGTCTACTTGTGACTAGTTTTC 57.090 33.333 4.82 8.44 46.17 2.29
2691 3152 9.356433 GAATAGTCTACTTGTGACTAGTTTTCC 57.644 37.037 4.82 0.00 46.17 3.13
2692 3153 6.980416 AGTCTACTTGTGACTAGTTTTCCT 57.020 37.500 4.82 0.00 42.28 3.36
2693 3154 7.362802 AGTCTACTTGTGACTAGTTTTCCTT 57.637 36.000 4.82 0.00 42.28 3.36
2694 3155 7.793036 AGTCTACTTGTGACTAGTTTTCCTTT 58.207 34.615 4.82 0.00 42.28 3.11
2695 3156 7.927092 AGTCTACTTGTGACTAGTTTTCCTTTC 59.073 37.037 4.82 0.00 42.28 2.62
2696 3157 7.709613 GTCTACTTGTGACTAGTTTTCCTTTCA 59.290 37.037 4.82 0.00 0.00 2.69
2697 3158 8.429641 TCTACTTGTGACTAGTTTTCCTTTCAT 58.570 33.333 4.82 0.00 0.00 2.57
2698 3159 7.881775 ACTTGTGACTAGTTTTCCTTTCATT 57.118 32.000 0.00 0.00 0.00 2.57
2699 3160 7.931275 ACTTGTGACTAGTTTTCCTTTCATTC 58.069 34.615 0.00 0.00 0.00 2.67
2700 3161 7.775561 ACTTGTGACTAGTTTTCCTTTCATTCT 59.224 33.333 0.00 0.00 0.00 2.40
2701 3162 8.519799 TTGTGACTAGTTTTCCTTTCATTCTT 57.480 30.769 0.00 0.00 0.00 2.52
2702 3163 8.519799 TGTGACTAGTTTTCCTTTCATTCTTT 57.480 30.769 0.00 0.00 0.00 2.52
2703 3164 8.966868 TGTGACTAGTTTTCCTTTCATTCTTTT 58.033 29.630 0.00 0.00 0.00 2.27
2704 3165 9.803315 GTGACTAGTTTTCCTTTCATTCTTTTT 57.197 29.630 0.00 0.00 0.00 1.94
2730 3191 8.205131 TGAAACTTTACTTGTGACTAGTTTCC 57.795 34.615 17.73 5.90 45.27 3.13
2731 3192 8.044908 TGAAACTTTACTTGTGACTAGTTTCCT 58.955 33.333 17.73 0.00 45.27 3.36
2732 3193 8.803397 AAACTTTACTTGTGACTAGTTTCCTT 57.197 30.769 4.82 0.00 32.14 3.36
2733 3194 8.434733 AACTTTACTTGTGACTAGTTTCCTTC 57.565 34.615 4.82 0.00 0.00 3.46
2734 3195 7.562135 ACTTTACTTGTGACTAGTTTCCTTCA 58.438 34.615 4.82 0.00 0.00 3.02
2735 3196 7.494952 ACTTTACTTGTGACTAGTTTCCTTCAC 59.505 37.037 4.82 0.00 39.09 3.18
2736 3197 5.615925 ACTTGTGACTAGTTTCCTTCACT 57.384 39.130 10.43 0.00 39.33 3.41
2737 3198 6.726490 ACTTGTGACTAGTTTCCTTCACTA 57.274 37.500 10.43 3.77 39.33 2.74
2738 3199 7.120923 ACTTGTGACTAGTTTCCTTCACTAA 57.879 36.000 10.43 4.35 39.33 2.24
2739 3200 7.562135 ACTTGTGACTAGTTTCCTTCACTAAA 58.438 34.615 10.43 0.00 39.33 1.85
2740 3201 8.044908 ACTTGTGACTAGTTTCCTTCACTAAAA 58.955 33.333 10.43 0.00 39.33 1.52
2741 3202 8.433421 TTGTGACTAGTTTCCTTCACTAAAAG 57.567 34.615 10.43 0.00 39.33 2.27
2742 3203 6.990349 TGTGACTAGTTTCCTTCACTAAAAGG 59.010 38.462 10.43 0.00 46.11 3.11
2743 3204 6.990939 GTGACTAGTTTCCTTCACTAAAAGGT 59.009 38.462 0.00 0.00 45.16 3.50
2744 3205 7.498239 GTGACTAGTTTCCTTCACTAAAAGGTT 59.502 37.037 0.00 0.00 45.16 3.50
2745 3206 7.497909 TGACTAGTTTCCTTCACTAAAAGGTTG 59.502 37.037 0.00 0.00 45.16 3.77
2746 3207 7.571025 ACTAGTTTCCTTCACTAAAAGGTTGA 58.429 34.615 2.81 0.00 45.16 3.18
2747 3208 8.050930 ACTAGTTTCCTTCACTAAAAGGTTGAA 58.949 33.333 2.81 0.00 45.16 2.69
2748 3209 7.334844 AGTTTCCTTCACTAAAAGGTTGAAG 57.665 36.000 3.98 3.98 45.16 3.02
2749 3210 6.890268 AGTTTCCTTCACTAAAAGGTTGAAGT 59.110 34.615 9.15 0.00 45.16 3.01
2750 3211 7.396339 AGTTTCCTTCACTAAAAGGTTGAAGTT 59.604 33.333 9.15 0.00 45.16 2.66
2751 3212 8.680001 GTTTCCTTCACTAAAAGGTTGAAGTTA 58.320 33.333 9.15 0.00 45.16 2.24
2752 3213 7.797038 TCCTTCACTAAAAGGTTGAAGTTAC 57.203 36.000 9.15 0.00 45.16 2.50
2753 3214 6.769341 TCCTTCACTAAAAGGTTGAAGTTACC 59.231 38.462 9.15 0.00 45.16 2.85
2754 3215 6.544564 CCTTCACTAAAAGGTTGAAGTTACCA 59.455 38.462 9.15 0.00 40.86 3.25
2755 3216 7.230712 CCTTCACTAAAAGGTTGAAGTTACCAT 59.769 37.037 9.15 0.00 40.86 3.55
2756 3217 9.280174 CTTCACTAAAAGGTTGAAGTTACCATA 57.720 33.333 2.96 0.00 38.16 2.74
2757 3218 8.611654 TCACTAAAAGGTTGAAGTTACCATAC 57.388 34.615 0.00 0.00 38.16 2.39
2758 3219 8.434392 TCACTAAAAGGTTGAAGTTACCATACT 58.566 33.333 0.00 0.00 38.16 2.12
2759 3220 8.718734 CACTAAAAGGTTGAAGTTACCATACTC 58.281 37.037 0.00 0.00 38.16 2.59
2760 3221 8.434392 ACTAAAAGGTTGAAGTTACCATACTCA 58.566 33.333 0.00 0.00 38.16 3.41
2761 3222 9.280174 CTAAAAGGTTGAAGTTACCATACTCAA 57.720 33.333 0.00 0.00 38.16 3.02
2762 3223 7.745620 AAAGGTTGAAGTTACCATACTCAAG 57.254 36.000 0.00 0.00 38.16 3.02
2763 3224 6.681729 AGGTTGAAGTTACCATACTCAAGA 57.318 37.500 0.00 0.00 38.16 3.02
2764 3225 6.702329 AGGTTGAAGTTACCATACTCAAGAG 58.298 40.000 0.00 0.00 38.16 2.85
2765 3226 6.270231 AGGTTGAAGTTACCATACTCAAGAGT 59.730 38.462 7.96 7.96 40.46 3.24
2766 3227 7.453752 AGGTTGAAGTTACCATACTCAAGAGTA 59.546 37.037 11.95 11.95 39.18 2.59
2767 3228 7.760340 GGTTGAAGTTACCATACTCAAGAGTAG 59.240 40.741 14.54 5.72 45.94 2.57
2768 3229 6.864342 TGAAGTTACCATACTCAAGAGTAGC 58.136 40.000 14.54 0.00 45.94 3.58
2769 3230 6.436218 TGAAGTTACCATACTCAAGAGTAGCA 59.564 38.462 14.54 0.00 45.94 3.49
2770 3231 7.124298 TGAAGTTACCATACTCAAGAGTAGCAT 59.876 37.037 14.54 5.84 45.94 3.79
2771 3232 8.534954 AAGTTACCATACTCAAGAGTAGCATA 57.465 34.615 14.54 5.04 45.94 3.14
2772 3233 8.713708 AGTTACCATACTCAAGAGTAGCATAT 57.286 34.615 14.54 0.00 45.94 1.78
2773 3234 9.148879 AGTTACCATACTCAAGAGTAGCATATT 57.851 33.333 14.54 0.00 45.94 1.28
2774 3235 9.413048 GTTACCATACTCAAGAGTAGCATATTC 57.587 37.037 14.54 1.40 45.94 1.75
2775 3236 7.603180 ACCATACTCAAGAGTAGCATATTCA 57.397 36.000 14.54 0.00 45.94 2.57
2776 3237 8.023021 ACCATACTCAAGAGTAGCATATTCAA 57.977 34.615 14.54 0.00 45.94 2.69
2777 3238 8.654997 ACCATACTCAAGAGTAGCATATTCAAT 58.345 33.333 14.54 0.00 45.94 2.57
2778 3239 9.499479 CCATACTCAAGAGTAGCATATTCAATT 57.501 33.333 14.54 0.00 45.94 2.32
2781 3242 8.798859 ACTCAAGAGTAGCATATTCAATTTGT 57.201 30.769 0.00 0.00 40.43 2.83
2782 3243 9.236006 ACTCAAGAGTAGCATATTCAATTTGTT 57.764 29.630 0.00 0.00 40.43 2.83
2896 3357 6.860023 GCTTAGCTGCATGGACTTTTAATATG 59.140 38.462 1.02 0.00 0.00 1.78
2911 3372 3.859745 AATATGTGCACGCGTATTCAG 57.140 42.857 13.44 0.00 0.00 3.02
2936 3397 5.183904 ACCATGAGCAACCAGTTTAATTCTC 59.816 40.000 0.00 0.00 0.00 2.87
3010 3633 8.941995 ATATAGTAGCACTAGGATCTGTTTCA 57.058 34.615 0.00 0.00 33.66 2.69
3018 3641 6.406370 CACTAGGATCTGTTTCATTACACCA 58.594 40.000 0.00 0.00 0.00 4.17
3030 3653 9.018582 TGTTTCATTACACCAAATCATGTATGA 57.981 29.630 0.00 0.00 41.70 2.15
3048 3671 6.054941 TGTATGATAATCACGGCATCTTGTT 58.945 36.000 0.00 0.00 0.00 2.83
3068 3692 9.462174 TCTTGTTGTTAAAGCATTTCATTACTG 57.538 29.630 0.00 0.00 40.09 2.74
3069 3693 9.248291 CTTGTTGTTAAAGCATTTCATTACTGT 57.752 29.630 0.00 0.00 40.09 3.55
3070 3694 8.795786 TGTTGTTAAAGCATTTCATTACTGTC 57.204 30.769 0.00 0.00 40.09 3.51
3071 3695 8.409371 TGTTGTTAAAGCATTTCATTACTGTCA 58.591 29.630 0.00 0.00 40.09 3.58
3072 3696 8.690840 GTTGTTAAAGCATTTCATTACTGTCAC 58.309 33.333 0.00 0.00 40.09 3.67
3073 3697 7.367285 TGTTAAAGCATTTCATTACTGTCACC 58.633 34.615 0.00 0.00 40.09 4.02
3074 3698 4.685169 AAGCATTTCATTACTGTCACCG 57.315 40.909 0.00 0.00 0.00 4.94
3088 3719 3.921677 TGTCACCGGAGTCTTGAAATAC 58.078 45.455 9.46 0.00 0.00 1.89
3116 3747 8.836268 ATTTCACATTGCATACAAATTTCACT 57.164 26.923 0.00 0.00 39.77 3.41
3124 3755 5.365133 GCATACAAATTTCACTTGTTTGCG 58.635 37.500 12.89 0.00 45.27 4.85
3322 3953 6.008331 TCTATCTAGCCGCTTGGTATTCTTA 58.992 40.000 0.00 0.00 34.16 2.10
3414 4045 8.783093 CAACCAGTTTAATTCTAGTTCACATGA 58.217 33.333 0.00 0.00 0.00 3.07
3520 4151 4.901197 TGAAGCACTTCTACCATTACCA 57.099 40.909 11.44 0.00 40.14 3.25
3523 4154 5.189736 TGAAGCACTTCTACCATTACCAGAT 59.810 40.000 11.44 0.00 40.14 2.90
3611 4242 9.414295 TGAGAATATTTGCAAGAAATGAAACTG 57.586 29.630 0.00 0.00 0.00 3.16
3680 4311 8.477984 TTTGGAAGATTAATGCAACAAATAGC 57.522 30.769 0.00 0.00 0.00 2.97
3751 4382 5.769662 TGGTGAAACATCTGAAATTGCTAGT 59.230 36.000 0.00 0.00 39.98 2.57
3766 4397 1.264288 GCTAGTGTTGGTGTTCACTGC 59.736 52.381 7.88 6.18 43.46 4.40
3818 4449 1.990614 GGACCAGAGGAGGACCACC 60.991 68.421 0.00 0.00 42.16 4.61
3819 4450 2.283966 ACCAGAGGAGGACCACCG 60.284 66.667 1.88 0.00 41.83 4.94
3864 4495 9.952030 TGATGGACAACAAATTAATACTAGACA 57.048 29.630 0.00 0.00 0.00 3.41
3933 4564 5.929697 TCCGATAATTTGACATGAGATGC 57.070 39.130 0.00 0.00 0.00 3.91
3945 4576 5.587443 TGACATGAGATGCCTTTACAAGATG 59.413 40.000 0.00 0.00 0.00 2.90
4326 4958 2.364324 TGTCTACAGCTTCGGTGTCTTT 59.636 45.455 1.61 0.00 43.42 2.52
4368 5000 4.319177 GCAAGTCACCTGTTCAGATAACT 58.681 43.478 1.00 0.00 0.00 2.24
4672 5304 0.619505 AGAAAGCTCATCTGCAGCCT 59.380 50.000 9.47 0.00 37.63 4.58
4737 5374 1.340568 GGGTAGGAGCACGGATAGTTC 59.659 57.143 0.00 0.00 0.00 3.01
4885 5522 5.465532 TTCTGCAAGCAATTGAACCAATA 57.534 34.783 10.34 0.00 32.43 1.90
4952 5594 5.634896 CAATAGAACAGTGACTGCCAAATC 58.365 41.667 13.37 3.89 34.37 2.17
4953 5595 3.498774 AGAACAGTGACTGCCAAATCT 57.501 42.857 13.37 6.12 34.37 2.40
4954 5596 3.825328 AGAACAGTGACTGCCAAATCTT 58.175 40.909 13.37 0.00 34.37 2.40
4955 5597 3.567164 AGAACAGTGACTGCCAAATCTTG 59.433 43.478 13.37 0.00 34.37 3.02
4956 5598 3.213206 ACAGTGACTGCCAAATCTTGA 57.787 42.857 13.37 0.00 34.37 3.02
4957 5599 3.144506 ACAGTGACTGCCAAATCTTGAG 58.855 45.455 13.37 0.00 34.37 3.02
4958 5600 3.181451 ACAGTGACTGCCAAATCTTGAGA 60.181 43.478 13.37 0.00 34.37 3.27
4959 5601 3.188048 CAGTGACTGCCAAATCTTGAGAC 59.812 47.826 0.00 0.00 0.00 3.36
4960 5602 3.072184 AGTGACTGCCAAATCTTGAGACT 59.928 43.478 0.00 0.00 0.00 3.24
4961 5603 3.817647 GTGACTGCCAAATCTTGAGACTT 59.182 43.478 0.00 0.00 0.00 3.01
4962 5604 3.817084 TGACTGCCAAATCTTGAGACTTG 59.183 43.478 0.00 0.00 31.71 3.16
4963 5605 4.067896 GACTGCCAAATCTTGAGACTTGA 58.932 43.478 3.94 0.00 33.54 3.02
4964 5606 4.464008 ACTGCCAAATCTTGAGACTTGAA 58.536 39.130 3.94 0.00 33.54 2.69
4965 5607 5.075493 ACTGCCAAATCTTGAGACTTGAAT 58.925 37.500 3.94 0.00 33.54 2.57
4966 5608 5.048224 ACTGCCAAATCTTGAGACTTGAATG 60.048 40.000 3.94 0.00 33.54 2.67
4967 5609 4.171754 GCCAAATCTTGAGACTTGAATGC 58.828 43.478 3.94 0.00 33.54 3.56
4968 5610 4.321452 GCCAAATCTTGAGACTTGAATGCA 60.321 41.667 3.94 0.00 33.54 3.96
4969 5611 5.159209 CCAAATCTTGAGACTTGAATGCAC 58.841 41.667 3.94 0.00 33.54 4.57
4970 5612 5.048224 CCAAATCTTGAGACTTGAATGCACT 60.048 40.000 3.94 0.00 33.54 4.40
4971 5613 5.624344 AATCTTGAGACTTGAATGCACTG 57.376 39.130 0.00 0.00 0.00 3.66
4972 5614 4.341366 TCTTGAGACTTGAATGCACTGA 57.659 40.909 0.00 0.00 0.00 3.41
4973 5615 4.903054 TCTTGAGACTTGAATGCACTGAT 58.097 39.130 0.00 0.00 0.00 2.90
4974 5616 4.694037 TCTTGAGACTTGAATGCACTGATG 59.306 41.667 0.00 0.00 0.00 3.07
4975 5617 3.340928 TGAGACTTGAATGCACTGATGG 58.659 45.455 0.00 0.00 0.00 3.51
4976 5618 3.244665 TGAGACTTGAATGCACTGATGGT 60.245 43.478 0.00 0.00 0.00 3.55
4977 5619 4.020307 TGAGACTTGAATGCACTGATGGTA 60.020 41.667 0.00 0.00 0.00 3.25
4978 5620 4.910195 AGACTTGAATGCACTGATGGTAA 58.090 39.130 0.00 0.00 0.00 2.85
4979 5621 5.316167 AGACTTGAATGCACTGATGGTAAA 58.684 37.500 0.00 0.00 0.00 2.01
4980 5622 5.948162 AGACTTGAATGCACTGATGGTAAAT 59.052 36.000 0.00 0.00 0.00 1.40
4981 5623 6.435277 AGACTTGAATGCACTGATGGTAAATT 59.565 34.615 0.00 0.00 0.00 1.82
4982 5624 7.611467 AGACTTGAATGCACTGATGGTAAATTA 59.389 33.333 0.00 0.00 0.00 1.40
4983 5625 7.765307 ACTTGAATGCACTGATGGTAAATTAG 58.235 34.615 0.00 0.00 0.00 1.73
4984 5626 6.698008 TGAATGCACTGATGGTAAATTAGG 57.302 37.500 0.00 0.00 0.00 2.69
4985 5627 5.593909 TGAATGCACTGATGGTAAATTAGGG 59.406 40.000 0.00 0.00 0.00 3.53
4986 5628 4.853468 TGCACTGATGGTAAATTAGGGA 57.147 40.909 0.00 0.00 0.00 4.20
4987 5629 5.387113 TGCACTGATGGTAAATTAGGGAT 57.613 39.130 0.00 0.00 0.00 3.85
4988 5630 5.132502 TGCACTGATGGTAAATTAGGGATG 58.867 41.667 0.00 0.00 0.00 3.51
4989 5631 4.520492 GCACTGATGGTAAATTAGGGATGG 59.480 45.833 0.00 0.00 0.00 3.51
4990 5632 4.520492 CACTGATGGTAAATTAGGGATGGC 59.480 45.833 0.00 0.00 0.00 4.40
4991 5633 4.167892 ACTGATGGTAAATTAGGGATGGCA 59.832 41.667 0.00 0.00 0.00 4.92
4992 5634 5.136068 TGATGGTAAATTAGGGATGGCAA 57.864 39.130 0.00 0.00 0.00 4.52
4993 5635 5.714863 TGATGGTAAATTAGGGATGGCAAT 58.285 37.500 0.00 0.00 0.00 3.56
4994 5636 5.539574 TGATGGTAAATTAGGGATGGCAATG 59.460 40.000 0.00 0.00 0.00 2.82
4995 5637 4.222336 TGGTAAATTAGGGATGGCAATGG 58.778 43.478 0.00 0.00 0.00 3.16
4996 5638 4.223144 GGTAAATTAGGGATGGCAATGGT 58.777 43.478 0.00 0.00 0.00 3.55
4997 5639 4.653801 GGTAAATTAGGGATGGCAATGGTT 59.346 41.667 0.00 0.00 0.00 3.67
4998 5640 5.836358 GGTAAATTAGGGATGGCAATGGTTA 59.164 40.000 0.00 0.00 0.00 2.85
4999 5641 6.015434 GGTAAATTAGGGATGGCAATGGTTAG 60.015 42.308 0.00 0.00 0.00 2.34
5000 5642 3.593442 TTAGGGATGGCAATGGTTAGG 57.407 47.619 0.00 0.00 0.00 2.69
5001 5643 0.557729 AGGGATGGCAATGGTTAGGG 59.442 55.000 0.00 0.00 0.00 3.53
5002 5644 0.261696 GGGATGGCAATGGTTAGGGT 59.738 55.000 0.00 0.00 0.00 4.34
5003 5645 1.497286 GGGATGGCAATGGTTAGGGTA 59.503 52.381 0.00 0.00 0.00 3.69
5004 5646 2.110011 GGGATGGCAATGGTTAGGGTAT 59.890 50.000 0.00 0.00 0.00 2.73
5005 5647 3.437931 GGGATGGCAATGGTTAGGGTATT 60.438 47.826 0.00 0.00 0.00 1.89
5006 5648 3.573967 GGATGGCAATGGTTAGGGTATTG 59.426 47.826 0.00 0.00 35.47 1.90
5007 5649 3.025322 TGGCAATGGTTAGGGTATTGG 57.975 47.619 0.00 0.00 33.54 3.16
5008 5650 1.686587 GGCAATGGTTAGGGTATTGGC 59.313 52.381 0.00 0.00 45.66 4.52
5009 5651 1.336755 GCAATGGTTAGGGTATTGGCG 59.663 52.381 0.00 0.00 33.54 5.69
5010 5652 1.953686 CAATGGTTAGGGTATTGGCGG 59.046 52.381 0.00 0.00 0.00 6.13
5011 5653 0.476771 ATGGTTAGGGTATTGGCGGG 59.523 55.000 0.00 0.00 0.00 6.13
5012 5654 0.915387 TGGTTAGGGTATTGGCGGGT 60.915 55.000 0.00 0.00 0.00 5.28
5013 5655 1.130777 GGTTAGGGTATTGGCGGGTA 58.869 55.000 0.00 0.00 0.00 3.69
5014 5656 1.701292 GGTTAGGGTATTGGCGGGTAT 59.299 52.381 0.00 0.00 0.00 2.73
5015 5657 2.905736 GGTTAGGGTATTGGCGGGTATA 59.094 50.000 0.00 0.00 0.00 1.47
5016 5658 3.327464 GGTTAGGGTATTGGCGGGTATAA 59.673 47.826 0.00 0.00 0.00 0.98
5017 5659 4.019051 GGTTAGGGTATTGGCGGGTATAAT 60.019 45.833 0.00 0.00 0.00 1.28
5018 5660 3.994931 AGGGTATTGGCGGGTATAATC 57.005 47.619 0.00 0.00 0.00 1.75
5019 5661 3.527937 AGGGTATTGGCGGGTATAATCT 58.472 45.455 0.00 0.00 0.00 2.40
5020 5662 3.518303 AGGGTATTGGCGGGTATAATCTC 59.482 47.826 0.00 0.00 0.00 2.75
5021 5663 3.370209 GGGTATTGGCGGGTATAATCTCC 60.370 52.174 0.00 0.00 0.00 3.71
5022 5664 3.518303 GGTATTGGCGGGTATAATCTCCT 59.482 47.826 0.00 0.00 0.00 3.69
5023 5665 4.019591 GGTATTGGCGGGTATAATCTCCTT 60.020 45.833 0.00 0.00 0.00 3.36
5024 5666 3.764237 TTGGCGGGTATAATCTCCTTC 57.236 47.619 0.00 0.00 0.00 3.46
5025 5667 2.684943 TGGCGGGTATAATCTCCTTCA 58.315 47.619 0.00 0.00 0.00 3.02
5026 5668 3.042682 TGGCGGGTATAATCTCCTTCAA 58.957 45.455 0.00 0.00 0.00 2.69
5027 5669 3.181458 TGGCGGGTATAATCTCCTTCAAC 60.181 47.826 0.00 0.00 0.00 3.18
5028 5670 3.400255 GCGGGTATAATCTCCTTCAACC 58.600 50.000 0.00 0.00 0.00 3.77
5029 5671 3.806157 GCGGGTATAATCTCCTTCAACCC 60.806 52.174 0.00 0.00 38.05 4.11
5030 5672 3.389983 CGGGTATAATCTCCTTCAACCCA 59.610 47.826 8.27 0.00 39.98 4.51
5031 5673 4.141574 CGGGTATAATCTCCTTCAACCCAA 60.142 45.833 8.27 0.00 39.98 4.12
5032 5674 5.630539 CGGGTATAATCTCCTTCAACCCAAA 60.631 44.000 8.27 0.00 39.98 3.28
5033 5675 5.593095 GGGTATAATCTCCTTCAACCCAAAC 59.407 44.000 2.77 0.00 39.85 2.93
5034 5676 5.593095 GGTATAATCTCCTTCAACCCAAACC 59.407 44.000 0.00 0.00 0.00 3.27
5035 5677 2.604912 ATCTCCTTCAACCCAAACCC 57.395 50.000 0.00 0.00 0.00 4.11
5036 5678 1.227249 TCTCCTTCAACCCAAACCCA 58.773 50.000 0.00 0.00 0.00 4.51
5037 5679 1.786441 TCTCCTTCAACCCAAACCCAT 59.214 47.619 0.00 0.00 0.00 4.00
5038 5680 2.990284 TCTCCTTCAACCCAAACCCATA 59.010 45.455 0.00 0.00 0.00 2.74
5039 5681 3.089284 CTCCTTCAACCCAAACCCATAC 58.911 50.000 0.00 0.00 0.00 2.39
5040 5682 2.176045 CCTTCAACCCAAACCCATACC 58.824 52.381 0.00 0.00 0.00 2.73
5041 5683 2.176045 CTTCAACCCAAACCCATACCC 58.824 52.381 0.00 0.00 0.00 3.69
5042 5684 1.158904 TCAACCCAAACCCATACCCA 58.841 50.000 0.00 0.00 0.00 4.51
5043 5685 1.203075 TCAACCCAAACCCATACCCAC 60.203 52.381 0.00 0.00 0.00 4.61
5044 5686 0.861155 AACCCAAACCCATACCCACA 59.139 50.000 0.00 0.00 0.00 4.17
5045 5687 0.407918 ACCCAAACCCATACCCACAG 59.592 55.000 0.00 0.00 0.00 3.66
5046 5688 0.701731 CCCAAACCCATACCCACAGA 59.298 55.000 0.00 0.00 0.00 3.41
5047 5689 1.076350 CCCAAACCCATACCCACAGAA 59.924 52.381 0.00 0.00 0.00 3.02
5048 5690 2.491825 CCCAAACCCATACCCACAGAAA 60.492 50.000 0.00 0.00 0.00 2.52
5049 5691 2.560981 CCAAACCCATACCCACAGAAAC 59.439 50.000 0.00 0.00 0.00 2.78
5050 5692 2.194201 AACCCATACCCACAGAAACG 57.806 50.000 0.00 0.00 0.00 3.60
5051 5693 0.322187 ACCCATACCCACAGAAACGC 60.322 55.000 0.00 0.00 0.00 4.84
5052 5694 0.322098 CCCATACCCACAGAAACGCA 60.322 55.000 0.00 0.00 0.00 5.24
5053 5695 1.086696 CCATACCCACAGAAACGCAG 58.913 55.000 0.00 0.00 0.00 5.18
5054 5696 1.086696 CATACCCACAGAAACGCAGG 58.913 55.000 0.00 0.00 0.00 4.85
5055 5697 0.690762 ATACCCACAGAAACGCAGGT 59.309 50.000 0.00 0.00 0.00 4.00
5056 5698 1.340088 TACCCACAGAAACGCAGGTA 58.660 50.000 0.00 0.00 0.00 3.08
5070 5712 3.775654 GGTAGCTCCAGCAGGCGT 61.776 66.667 0.48 0.00 45.16 5.68
5083 5725 1.453155 CAGGCGTGCTAAATTCCAGT 58.547 50.000 0.00 0.00 0.00 4.00
5088 5732 0.521291 GTGCTAAATTCCAGTGCGCA 59.479 50.000 5.66 5.66 34.71 6.09
5119 5765 4.869297 CACAAGCAACATTTTCCACTCAAA 59.131 37.500 0.00 0.00 0.00 2.69
5240 5888 9.912634 AACAAATAGTTCATGAACAATACAAGG 57.087 29.630 33.92 19.43 43.47 3.61
5253 5901 9.126151 TGAACAATACAAGGAATAGTCAACAAA 57.874 29.630 0.00 0.00 0.00 2.83
5264 5914 8.073768 AGGAATAGTCAACAAATACAACAAACG 58.926 33.333 0.00 0.00 0.00 3.60
5287 5937 7.754625 ACGTACAACATCAAACTAGTTTTGTT 58.245 30.769 23.55 23.55 44.47 2.83
5308 5958 1.076777 CCATCCCATGACCACCACC 60.077 63.158 0.00 0.00 0.00 4.61
5331 5981 4.509600 CCATCGACTAGATCCTTTTGAAGC 59.490 45.833 0.00 0.00 37.52 3.86
5347 5997 3.663025 TGAAGCTCATCATGTGTTTCGA 58.337 40.909 10.54 0.00 35.04 3.71
5436 6086 4.405680 ACGAGATGTCCCATCAACTCATAA 59.594 41.667 6.96 0.00 37.17 1.90
5516 6167 1.999735 ACAAGCGTTCATGATGTACCG 59.000 47.619 0.00 0.00 0.00 4.02
5547 6199 1.239347 GATCCCAAAATCTAGCCGGC 58.761 55.000 21.89 21.89 0.00 6.13
5556 6208 3.905678 CTAGCCGGCCCTCTCACG 61.906 72.222 26.15 0.00 0.00 4.35
5637 6289 4.560108 GCTTGAGCATTGTGGAAATCAAGT 60.560 41.667 12.70 0.00 43.42 3.16
5675 6327 0.040067 GCCTTCAACGGCTTCACAAG 60.040 55.000 0.00 0.00 46.63 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.036765 AACAAAGGCTGCATGCATGG 60.037 50.000 27.34 12.00 45.15 3.66
6 7 1.337354 TGAACAAAGGCTGCATGCATG 60.337 47.619 22.97 22.70 45.15 4.06
11 12 3.069872 TGAATGTTGAACAAAGGCTGCAT 59.930 39.130 0.62 0.00 0.00 3.96
13 14 3.096489 TGAATGTTGAACAAAGGCTGC 57.904 42.857 0.62 0.00 0.00 5.25
14 15 6.419980 TTTTTGAATGTTGAACAAAGGCTG 57.580 33.333 0.62 0.00 35.48 4.85
35 36 6.578163 AAGGCTGCATGCATTTTTATTTTT 57.422 29.167 22.97 3.26 43.70 1.94
45 46 1.071071 ACAAACAAAGGCTGCATGCAT 59.929 42.857 22.97 3.04 45.15 3.96
46 47 0.464870 ACAAACAAAGGCTGCATGCA 59.535 45.000 21.29 21.29 45.15 3.96
47 48 1.585297 AACAAACAAAGGCTGCATGC 58.415 45.000 11.82 11.82 41.94 4.06
48 49 2.219216 CGAAACAAACAAAGGCTGCATG 59.781 45.455 0.50 0.00 0.00 4.06
49 50 2.159114 ACGAAACAAACAAAGGCTGCAT 60.159 40.909 0.50 0.00 0.00 3.96
50 51 1.203523 ACGAAACAAACAAAGGCTGCA 59.796 42.857 0.50 0.00 0.00 4.41
51 52 1.921243 ACGAAACAAACAAAGGCTGC 58.079 45.000 0.00 0.00 0.00 5.25
52 53 3.506810 TCAACGAAACAAACAAAGGCTG 58.493 40.909 0.00 0.00 0.00 4.85
53 54 3.859411 TCAACGAAACAAACAAAGGCT 57.141 38.095 0.00 0.00 0.00 4.58
54 55 3.862845 ACATCAACGAAACAAACAAAGGC 59.137 39.130 0.00 0.00 0.00 4.35
55 56 4.267452 CCACATCAACGAAACAAACAAAGG 59.733 41.667 0.00 0.00 0.00 3.11
56 57 5.098893 TCCACATCAACGAAACAAACAAAG 58.901 37.500 0.00 0.00 0.00 2.77
59 60 4.097135 ACATCCACATCAACGAAACAAACA 59.903 37.500 0.00 0.00 0.00 2.83
63 64 3.210227 ACACATCCACATCAACGAAACA 58.790 40.909 0.00 0.00 0.00 2.83
68 69 3.614176 CAGTAGACACATCCACATCAACG 59.386 47.826 0.00 0.00 0.00 4.10
103 104 2.567497 CCCAAGCACCACTGCCAAG 61.567 63.158 0.00 0.00 45.53 3.61
125 126 0.458716 CCGAGAAAACTCGCTCTCCC 60.459 60.000 13.10 0.00 44.60 4.30
129 130 0.440371 CAAGCCGAGAAAACTCGCTC 59.560 55.000 13.10 7.73 44.60 5.03
130 131 0.249911 ACAAGCCGAGAAAACTCGCT 60.250 50.000 13.10 11.00 44.60 4.93
131 132 0.586802 AACAAGCCGAGAAAACTCGC 59.413 50.000 13.10 9.23 44.60 5.03
132 133 1.136611 CGAACAAGCCGAGAAAACTCG 60.137 52.381 11.84 11.84 45.43 4.18
166 182 1.227527 AAAAGCCACCAAAAGCGCC 60.228 52.632 2.29 0.00 0.00 6.53
212 228 8.764287 CATGTGAGAATGATACGCTTTAATACA 58.236 33.333 0.00 0.00 0.00 2.29
213 229 8.223769 CCATGTGAGAATGATACGCTTTAATAC 58.776 37.037 0.00 0.00 0.00 1.89
214 230 7.931407 ACCATGTGAGAATGATACGCTTTAATA 59.069 33.333 0.00 0.00 0.00 0.98
215 231 6.767902 ACCATGTGAGAATGATACGCTTTAAT 59.232 34.615 0.00 0.00 0.00 1.40
231 258 6.145338 ACTATACTCGGTTAACCATGTGAG 57.855 41.667 24.14 21.65 35.14 3.51
232 259 7.643569 TTACTATACTCGGTTAACCATGTGA 57.356 36.000 24.14 11.96 35.14 3.58
251 278 2.962125 TCAAACGAAGCCGCATTACTA 58.038 42.857 0.00 0.00 39.95 1.82
253 280 2.239201 GTTCAAACGAAGCCGCATTAC 58.761 47.619 0.00 0.00 39.95 1.89
260 287 8.798153 CATAAATATTCTTGTTCAAACGAAGCC 58.202 33.333 0.00 0.00 0.00 4.35
287 314 1.218230 GATTCGATCACGCTCCCTGC 61.218 60.000 0.00 0.00 39.58 4.85
288 315 0.103026 TGATTCGATCACGCTCCCTG 59.897 55.000 0.00 0.00 39.58 4.45
289 316 2.504920 TGATTCGATCACGCTCCCT 58.495 52.632 0.00 0.00 39.58 4.20
309 336 0.234884 CGTTTCGAAGCACTTGGGTC 59.765 55.000 12.66 0.00 0.00 4.46
311 338 1.128692 GATCGTTTCGAAGCACTTGGG 59.871 52.381 12.66 0.00 39.99 4.12
313 340 3.795561 AAGATCGTTTCGAAGCACTTG 57.204 42.857 12.66 0.00 39.99 3.16
314 341 4.527564 CAAAAGATCGTTTCGAAGCACTT 58.472 39.130 12.66 10.57 39.99 3.16
315 342 3.607078 GCAAAAGATCGTTTCGAAGCACT 60.607 43.478 12.66 5.36 39.99 4.40
316 343 2.652172 GCAAAAGATCGTTTCGAAGCAC 59.348 45.455 12.66 1.29 39.99 4.40
317 344 2.289274 TGCAAAAGATCGTTTCGAAGCA 59.711 40.909 12.66 11.09 39.99 3.91
318 345 2.916111 TGCAAAAGATCGTTTCGAAGC 58.084 42.857 3.46 1.33 39.99 3.86
319 346 3.775610 CGATGCAAAAGATCGTTTCGAAG 59.224 43.478 3.46 0.00 39.99 3.79
321 348 3.368321 CGATGCAAAAGATCGTTTCGA 57.632 42.857 3.46 0.00 38.31 3.71
332 359 2.240230 GTCACCGGACGATGCAAAA 58.760 52.632 9.46 0.00 33.68 2.44
360 387 2.357517 CACCGCATCGCCTATCCC 60.358 66.667 0.00 0.00 0.00 3.85
361 388 3.044305 GCACCGCATCGCCTATCC 61.044 66.667 0.00 0.00 0.00 2.59
362 389 1.887242 TTGCACCGCATCGCCTATC 60.887 57.895 0.00 0.00 38.76 2.08
363 390 2.180204 GTTGCACCGCATCGCCTAT 61.180 57.895 0.00 0.00 38.76 2.57
364 391 2.817834 GTTGCACCGCATCGCCTA 60.818 61.111 0.00 0.00 38.76 3.93
453 495 8.291032 TCTCGTCTAGTAGTAGTACGGTATTAC 58.709 40.741 19.99 11.59 33.87 1.89
459 501 4.851014 CGATCTCGTCTAGTAGTAGTACGG 59.149 50.000 19.99 14.36 33.87 4.02
464 506 4.983538 TGCTTCGATCTCGTCTAGTAGTAG 59.016 45.833 0.00 0.00 40.80 2.57
465 507 4.941657 TGCTTCGATCTCGTCTAGTAGTA 58.058 43.478 0.00 0.00 40.80 1.82
466 508 3.794717 TGCTTCGATCTCGTCTAGTAGT 58.205 45.455 0.00 0.00 40.80 2.73
467 509 4.377943 CCATGCTTCGATCTCGTCTAGTAG 60.378 50.000 0.00 0.00 40.80 2.57
468 510 3.498777 CCATGCTTCGATCTCGTCTAGTA 59.501 47.826 0.00 0.00 40.80 1.82
469 511 2.292016 CCATGCTTCGATCTCGTCTAGT 59.708 50.000 0.00 0.00 40.80 2.57
470 512 2.550180 TCCATGCTTCGATCTCGTCTAG 59.450 50.000 0.00 0.00 40.80 2.43
488 545 2.552155 CCGGTTGAATCTTCTTGGTCCA 60.552 50.000 0.00 0.00 0.00 4.02
493 550 0.447801 CCGCCGGTTGAATCTTCTTG 59.552 55.000 1.90 0.00 0.00 3.02
494 551 1.305930 GCCGCCGGTTGAATCTTCTT 61.306 55.000 4.45 0.00 0.00 2.52
495 552 1.745489 GCCGCCGGTTGAATCTTCT 60.745 57.895 4.45 0.00 0.00 2.85
523 583 3.846360 CAGTCACGGTAGGAAAACCTAG 58.154 50.000 0.00 0.00 37.39 3.02
524 584 2.028748 GCAGTCACGGTAGGAAAACCTA 60.029 50.000 0.00 0.00 37.39 3.08
525 585 1.270678 GCAGTCACGGTAGGAAAACCT 60.271 52.381 0.00 0.00 37.39 3.50
526 586 1.154197 GCAGTCACGGTAGGAAAACC 58.846 55.000 0.00 0.00 36.08 3.27
527 587 0.788391 CGCAGTCACGGTAGGAAAAC 59.212 55.000 0.00 0.00 0.00 2.43
535 612 4.969196 CCTGTGCGCAGTCACGGT 62.969 66.667 24.85 0.00 41.02 4.83
552 629 2.743928 CAGCACCAGACGGCCTTC 60.744 66.667 0.00 0.00 34.57 3.46
592 680 1.448540 GTGTCGGTCAGATGGGCAG 60.449 63.158 0.00 0.00 0.00 4.85
699 787 1.546589 ATTTGTGGGGGCTGCATGTG 61.547 55.000 0.50 0.00 0.00 3.21
700 788 1.229272 ATTTGTGGGGGCTGCATGT 60.229 52.632 0.50 0.00 0.00 3.21
709 797 0.604578 CTTGTGCTGGATTTGTGGGG 59.395 55.000 0.00 0.00 0.00 4.96
781 869 2.886124 GGAGTTGGCGCTACGAGC 60.886 66.667 7.64 1.78 38.02 5.03
783 871 3.766691 GGGGAGTTGGCGCTACGA 61.767 66.667 7.64 0.00 0.00 3.43
784 872 4.077184 TGGGGAGTTGGCGCTACG 62.077 66.667 7.64 0.00 0.00 3.51
819 1096 4.704833 CTGTGGTGTGGGAGGCGG 62.705 72.222 0.00 0.00 0.00 6.13
827 1104 3.667282 GGCTGCTGCTGTGGTGTG 61.667 66.667 15.64 0.00 39.59 3.82
833 1110 4.943252 AAGCGTGGCTGCTGCTGT 62.943 61.111 15.64 4.12 46.60 4.40
834 1111 4.099170 GAAGCGTGGCTGCTGCTG 62.099 66.667 15.64 0.77 46.60 4.41
860 1137 1.458639 AAGGTGGCTGCTTTGTGCTC 61.459 55.000 0.00 0.00 43.37 4.26
1083 1394 3.308014 GAGGAAGTCCAGCAGCGCT 62.308 63.158 2.64 2.64 40.77 5.92
1467 1790 2.811317 GTGAGGTTGGAGAGCGCG 60.811 66.667 0.00 0.00 0.00 6.86
1752 2075 1.257936 CCGACGATAATGGCAAGAACG 59.742 52.381 0.00 0.00 0.00 3.95
2308 2631 3.573538 TGCAAATTCATTAGCCACACTGT 59.426 39.130 0.00 0.00 0.00 3.55
2309 2632 4.177165 TGCAAATTCATTAGCCACACTG 57.823 40.909 0.00 0.00 0.00 3.66
2353 2676 4.932146 ACCACAGTTCTAACAAACAATGC 58.068 39.130 0.00 0.00 0.00 3.56
2373 2700 5.692204 CACTCTCATTATCATCACCGTTACC 59.308 44.000 0.00 0.00 0.00 2.85
2433 2764 3.128242 GGACAATGGCAATCTTCTCAGTG 59.872 47.826 0.00 0.00 0.00 3.66
2475 2806 9.988815 CAGTACATCTGTTAGCCTTTCTATAAT 57.011 33.333 0.00 0.00 39.17 1.28
2531 2864 5.390885 GCACAACCATAACACATGACAGTAG 60.391 44.000 0.00 0.00 0.00 2.57
2609 2943 6.031751 AGTCTAAACTGAGTAGGAGCAAAG 57.968 41.667 0.00 0.00 33.32 2.77
2647 3108 9.678260 AGACTATTCAAGCAAGACAAAAGATAT 57.322 29.630 0.00 0.00 0.00 1.63
2649 3110 7.992754 AGACTATTCAAGCAAGACAAAAGAT 57.007 32.000 0.00 0.00 0.00 2.40
2650 3111 8.150945 AGTAGACTATTCAAGCAAGACAAAAGA 58.849 33.333 0.00 0.00 0.00 2.52
2651 3112 8.316640 AGTAGACTATTCAAGCAAGACAAAAG 57.683 34.615 0.00 0.00 0.00 2.27
2652 3113 8.559536 CAAGTAGACTATTCAAGCAAGACAAAA 58.440 33.333 0.00 0.00 0.00 2.44
2653 3114 7.715249 ACAAGTAGACTATTCAAGCAAGACAAA 59.285 33.333 0.00 0.00 0.00 2.83
2654 3115 7.171508 CACAAGTAGACTATTCAAGCAAGACAA 59.828 37.037 0.00 0.00 0.00 3.18
2655 3116 6.646653 CACAAGTAGACTATTCAAGCAAGACA 59.353 38.462 0.00 0.00 0.00 3.41
2656 3117 6.868864 TCACAAGTAGACTATTCAAGCAAGAC 59.131 38.462 0.00 0.00 0.00 3.01
2657 3118 6.868864 GTCACAAGTAGACTATTCAAGCAAGA 59.131 38.462 0.00 0.00 33.29 3.02
2658 3119 6.870965 AGTCACAAGTAGACTATTCAAGCAAG 59.129 38.462 0.00 0.00 44.10 4.01
2659 3120 6.759272 AGTCACAAGTAGACTATTCAAGCAA 58.241 36.000 0.00 0.00 44.10 3.91
2660 3121 6.346477 AGTCACAAGTAGACTATTCAAGCA 57.654 37.500 0.00 0.00 44.10 3.91
2661 3122 7.540299 ACTAGTCACAAGTAGACTATTCAAGC 58.460 38.462 3.79 0.00 44.86 4.01
2662 3123 9.915629 AAACTAGTCACAAGTAGACTATTCAAG 57.084 33.333 0.00 0.00 44.86 3.02
2664 3125 9.909644 GAAAACTAGTCACAAGTAGACTATTCA 57.090 33.333 0.00 0.00 44.86 2.57
2665 3126 9.356433 GGAAAACTAGTCACAAGTAGACTATTC 57.644 37.037 0.00 5.45 44.86 1.75
2666 3127 9.091220 AGGAAAACTAGTCACAAGTAGACTATT 57.909 33.333 0.00 0.00 44.86 1.73
2667 3128 8.653036 AGGAAAACTAGTCACAAGTAGACTAT 57.347 34.615 0.00 0.00 44.86 2.12
2668 3129 8.474710 AAGGAAAACTAGTCACAAGTAGACTA 57.525 34.615 0.00 0.00 44.10 2.59
2670 3131 7.709613 TGAAAGGAAAACTAGTCACAAGTAGAC 59.290 37.037 0.00 0.00 33.35 2.59
2671 3132 7.788026 TGAAAGGAAAACTAGTCACAAGTAGA 58.212 34.615 0.00 0.00 33.35 2.59
2672 3133 8.608844 ATGAAAGGAAAACTAGTCACAAGTAG 57.391 34.615 0.00 0.00 34.98 2.57
2673 3134 8.974060 AATGAAAGGAAAACTAGTCACAAGTA 57.026 30.769 0.00 0.00 0.00 2.24
2674 3135 7.775561 AGAATGAAAGGAAAACTAGTCACAAGT 59.224 33.333 0.00 0.00 0.00 3.16
2675 3136 8.159344 AGAATGAAAGGAAAACTAGTCACAAG 57.841 34.615 0.00 0.00 0.00 3.16
2676 3137 8.519799 AAGAATGAAAGGAAAACTAGTCACAA 57.480 30.769 0.00 0.00 0.00 3.33
2677 3138 8.519799 AAAGAATGAAAGGAAAACTAGTCACA 57.480 30.769 0.00 0.00 0.00 3.58
2678 3139 9.803315 AAAAAGAATGAAAGGAAAACTAGTCAC 57.197 29.630 0.00 0.00 0.00 3.67
2706 3167 8.434733 AGGAAACTAGTCACAAGTAAAGTTTC 57.565 34.615 14.34 14.34 46.07 2.78
2707 3168 8.803397 AAGGAAACTAGTCACAAGTAAAGTTT 57.197 30.769 0.00 0.00 42.68 2.66
2708 3169 8.044908 TGAAGGAAACTAGTCACAAGTAAAGTT 58.955 33.333 0.00 0.00 42.68 2.66
2709 3170 7.494952 GTGAAGGAAACTAGTCACAAGTAAAGT 59.505 37.037 0.00 0.00 44.20 2.66
2710 3171 7.711339 AGTGAAGGAAACTAGTCACAAGTAAAG 59.289 37.037 11.41 0.00 46.20 1.85
2711 3172 7.562135 AGTGAAGGAAACTAGTCACAAGTAAA 58.438 34.615 11.41 0.00 46.20 2.01
2712 3173 7.120923 AGTGAAGGAAACTAGTCACAAGTAA 57.879 36.000 11.41 0.00 46.20 2.24
2713 3174 6.726490 AGTGAAGGAAACTAGTCACAAGTA 57.274 37.500 11.41 0.00 46.20 2.24
2714 3175 5.615925 AGTGAAGGAAACTAGTCACAAGT 57.384 39.130 11.41 0.00 46.20 3.16
2715 3176 8.433421 TTTTAGTGAAGGAAACTAGTCACAAG 57.567 34.615 11.41 0.00 46.20 3.16
2716 3177 7.497909 CCTTTTAGTGAAGGAAACTAGTCACAA 59.502 37.037 11.41 3.30 46.20 3.33
2717 3178 6.990349 CCTTTTAGTGAAGGAAACTAGTCACA 59.010 38.462 11.41 0.00 46.20 3.58
2728 3189 7.583809 TGGTAACTTCAACCTTTTAGTGAAGGA 60.584 37.037 15.02 2.60 42.92 3.36
2729 3190 6.544564 TGGTAACTTCAACCTTTTAGTGAAGG 59.455 38.462 15.02 2.25 44.57 3.46
2730 3191 7.562454 TGGTAACTTCAACCTTTTAGTGAAG 57.438 36.000 10.31 10.31 41.03 3.02
2731 3192 9.059260 GTATGGTAACTTCAACCTTTTAGTGAA 57.941 33.333 0.00 0.00 37.91 3.18
2732 3193 8.434392 AGTATGGTAACTTCAACCTTTTAGTGA 58.566 33.333 0.00 0.00 37.91 3.41
2733 3194 8.617290 AGTATGGTAACTTCAACCTTTTAGTG 57.383 34.615 0.00 0.00 37.91 2.74
2734 3195 8.434392 TGAGTATGGTAACTTCAACCTTTTAGT 58.566 33.333 0.00 0.00 37.91 2.24
2735 3196 8.842358 TGAGTATGGTAACTTCAACCTTTTAG 57.158 34.615 0.00 0.00 37.91 1.85
2736 3197 9.280174 CTTGAGTATGGTAACTTCAACCTTTTA 57.720 33.333 0.00 0.00 37.91 1.52
2737 3198 7.996644 TCTTGAGTATGGTAACTTCAACCTTTT 59.003 33.333 0.00 0.00 37.91 2.27
2738 3199 7.514721 TCTTGAGTATGGTAACTTCAACCTTT 58.485 34.615 0.00 0.00 37.91 3.11
2739 3200 7.074653 TCTTGAGTATGGTAACTTCAACCTT 57.925 36.000 0.00 0.00 37.91 3.50
2740 3201 6.270231 ACTCTTGAGTATGGTAACTTCAACCT 59.730 38.462 0.89 0.00 37.91 3.50
2741 3202 6.465084 ACTCTTGAGTATGGTAACTTCAACC 58.535 40.000 0.89 0.00 37.53 3.77
2742 3203 7.275999 GCTACTCTTGAGTATGGTAACTTCAAC 59.724 40.741 10.47 0.00 37.61 3.18
2743 3204 7.039293 TGCTACTCTTGAGTATGGTAACTTCAA 60.039 37.037 10.47 0.00 37.61 2.69
2744 3205 6.436218 TGCTACTCTTGAGTATGGTAACTTCA 59.564 38.462 10.47 0.00 37.61 3.02
2745 3206 6.864342 TGCTACTCTTGAGTATGGTAACTTC 58.136 40.000 10.47 0.00 37.61 3.01
2746 3207 6.852420 TGCTACTCTTGAGTATGGTAACTT 57.148 37.500 10.47 0.00 37.61 2.66
2747 3208 8.713708 ATATGCTACTCTTGAGTATGGTAACT 57.286 34.615 10.47 0.00 37.61 2.24
2748 3209 9.413048 GAATATGCTACTCTTGAGTATGGTAAC 57.587 37.037 10.47 0.00 0.00 2.50
2749 3210 9.143155 TGAATATGCTACTCTTGAGTATGGTAA 57.857 33.333 10.47 0.00 0.00 2.85
2750 3211 8.706322 TGAATATGCTACTCTTGAGTATGGTA 57.294 34.615 10.47 1.65 0.00 3.25
2751 3212 7.603180 TGAATATGCTACTCTTGAGTATGGT 57.397 36.000 10.47 3.54 0.00 3.55
2752 3213 9.499479 AATTGAATATGCTACTCTTGAGTATGG 57.501 33.333 10.47 2.62 0.00 2.74
2755 3216 9.890629 ACAAATTGAATATGCTACTCTTGAGTA 57.109 29.630 9.75 9.75 0.00 2.59
2756 3217 8.798859 ACAAATTGAATATGCTACTCTTGAGT 57.201 30.769 8.41 8.41 0.00 3.41
2896 3357 1.011968 TGGTCTGAATACGCGTGCAC 61.012 55.000 24.59 6.82 0.00 4.57
2911 3372 5.183904 AGAATTAAACTGGTTGCTCATGGTC 59.816 40.000 0.00 0.00 0.00 4.02
2936 3397 1.000385 ACCAAACATGCCATGTGAACG 60.000 47.619 11.79 2.25 44.07 3.95
3018 3641 7.609146 AGATGCCGTGATTATCATACATGATTT 59.391 33.333 9.85 0.00 44.70 2.17
3030 3653 6.751514 TTAACAACAAGATGCCGTGATTAT 57.248 33.333 0.00 0.00 0.00 1.28
3048 3671 7.367285 GGTGACAGTAATGAAATGCTTTAACA 58.633 34.615 0.00 0.00 0.00 2.41
3067 3691 3.322541 TGTATTTCAAGACTCCGGTGACA 59.677 43.478 11.17 0.00 0.00 3.58
3068 3692 3.921677 TGTATTTCAAGACTCCGGTGAC 58.078 45.455 11.17 3.92 0.00 3.67
3069 3693 4.610605 TTGTATTTCAAGACTCCGGTGA 57.389 40.909 11.17 0.00 0.00 4.02
3070 3694 5.880054 ATTTGTATTTCAAGACTCCGGTG 57.120 39.130 0.00 0.00 37.35 4.94
3071 3695 6.894339 AAATTTGTATTTCAAGACTCCGGT 57.106 33.333 0.00 0.00 37.35 5.28
3088 3719 9.880064 TGAAATTTGTATGCAATGTGAAATTTG 57.120 25.926 16.31 0.00 33.59 2.32
3116 3747 1.388547 AACTGAGGAAGCGCAAACAA 58.611 45.000 11.47 0.00 0.00 2.83
3322 3953 6.206243 GCAGATAAGCATGATATGGACACTTT 59.794 38.462 0.00 0.00 0.00 2.66
3414 4045 2.300956 TGCCCATACACCAAACATGT 57.699 45.000 0.00 0.00 0.00 3.21
3494 4125 3.838244 TGGTAGAAGTGCTTCAACAGT 57.162 42.857 13.58 0.00 41.84 3.55
3520 4151 8.599624 ATGTCAAATTTGTATTCCAGGAATCT 57.400 30.769 18.67 0.00 33.95 2.40
3523 4154 9.270640 CAAAATGTCAAATTTGTATTCCAGGAA 57.729 29.630 17.47 3.72 33.04 3.36
3611 4242 1.747355 CTTGTGCATGACCCCATCTTC 59.253 52.381 0.00 0.00 0.00 2.87
3680 4311 1.461127 GCTAGTGACAAAGCTCCAACG 59.539 52.381 3.10 0.00 35.80 4.10
3751 4382 2.621055 GTTATGGCAGTGAACACCAACA 59.379 45.455 0.00 0.00 36.94 3.33
3766 4397 2.608623 GAAATGGGGGATGGGTTATGG 58.391 52.381 0.00 0.00 0.00 2.74
3818 4449 4.537015 TCACGATACTGATGCATCTAACG 58.463 43.478 26.32 21.54 0.00 3.18
3819 4450 5.347093 CCATCACGATACTGATGCATCTAAC 59.653 44.000 26.32 10.11 44.33 2.34
3845 4476 7.011950 TGGCCGATGTCTAGTATTAATTTGTTG 59.988 37.037 0.00 0.00 0.00 3.33
3864 4495 3.067180 CAGAATTAATGCTTGTGGCCGAT 59.933 43.478 0.00 0.00 40.92 4.18
3933 4564 4.082081 TGCAAATGGCTCATCTTGTAAAGG 60.082 41.667 0.00 0.00 44.04 3.11
3945 4576 7.874016 TGGATATCAATAAAATGCAAATGGCTC 59.126 33.333 4.83 0.00 45.15 4.70
3986 4617 7.934457 ACAATTGGCAGAATTATGAGATGTAC 58.066 34.615 10.83 0.00 0.00 2.90
4326 4958 1.604879 AGTGAGGAGCTCGAGCACA 60.605 57.895 36.87 25.98 45.16 4.57
4552 5184 3.452264 TCGATCATCTTCACCATGTCCTT 59.548 43.478 0.00 0.00 0.00 3.36
4553 5185 3.033909 TCGATCATCTTCACCATGTCCT 58.966 45.455 0.00 0.00 0.00 3.85
4672 5304 3.784178 ACTTCAGAGAACTCCATCAGGA 58.216 45.455 0.00 0.00 43.21 3.86
4737 5374 2.356313 AGCGCCGTCAAGACACAG 60.356 61.111 2.29 0.00 0.00 3.66
4741 5378 3.121030 ATGCAGCGCCGTCAAGAC 61.121 61.111 2.29 0.00 0.00 3.01
4744 5381 1.980951 GAATCATGCAGCGCCGTCAA 61.981 55.000 2.29 0.00 0.00 3.18
4745 5382 2.436469 AATCATGCAGCGCCGTCA 60.436 55.556 2.29 0.00 0.00 4.35
4885 5522 5.707298 CCACCAAAGTGTTTACAGATCAGAT 59.293 40.000 0.00 0.00 42.88 2.90
4952 5594 4.142665 CCATCAGTGCATTCAAGTCTCAAG 60.143 45.833 0.00 0.00 0.00 3.02
4953 5595 3.754850 CCATCAGTGCATTCAAGTCTCAA 59.245 43.478 0.00 0.00 0.00 3.02
4954 5596 3.244665 ACCATCAGTGCATTCAAGTCTCA 60.245 43.478 0.00 0.00 0.00 3.27
4955 5597 3.341823 ACCATCAGTGCATTCAAGTCTC 58.658 45.455 0.00 0.00 0.00 3.36
4956 5598 3.430042 ACCATCAGTGCATTCAAGTCT 57.570 42.857 0.00 0.00 0.00 3.24
4957 5599 5.627499 TTTACCATCAGTGCATTCAAGTC 57.373 39.130 0.00 0.00 0.00 3.01
4958 5600 6.594788 AATTTACCATCAGTGCATTCAAGT 57.405 33.333 0.00 0.00 0.00 3.16
4959 5601 7.198390 CCTAATTTACCATCAGTGCATTCAAG 58.802 38.462 0.00 0.00 0.00 3.02
4960 5602 6.096705 CCCTAATTTACCATCAGTGCATTCAA 59.903 38.462 0.00 0.00 0.00 2.69
4961 5603 5.593909 CCCTAATTTACCATCAGTGCATTCA 59.406 40.000 0.00 0.00 0.00 2.57
4962 5604 5.827797 TCCCTAATTTACCATCAGTGCATTC 59.172 40.000 0.00 0.00 0.00 2.67
4963 5605 5.765510 TCCCTAATTTACCATCAGTGCATT 58.234 37.500 0.00 0.00 0.00 3.56
4964 5606 5.387113 TCCCTAATTTACCATCAGTGCAT 57.613 39.130 0.00 0.00 0.00 3.96
4965 5607 4.853468 TCCCTAATTTACCATCAGTGCA 57.147 40.909 0.00 0.00 0.00 4.57
4966 5608 4.520492 CCATCCCTAATTTACCATCAGTGC 59.480 45.833 0.00 0.00 0.00 4.40
4967 5609 4.520492 GCCATCCCTAATTTACCATCAGTG 59.480 45.833 0.00 0.00 0.00 3.66
4968 5610 4.167892 TGCCATCCCTAATTTACCATCAGT 59.832 41.667 0.00 0.00 0.00 3.41
4969 5611 4.728772 TGCCATCCCTAATTTACCATCAG 58.271 43.478 0.00 0.00 0.00 2.90
4970 5612 4.805140 TGCCATCCCTAATTTACCATCA 57.195 40.909 0.00 0.00 0.00 3.07
4971 5613 5.047092 CCATTGCCATCCCTAATTTACCATC 60.047 44.000 0.00 0.00 0.00 3.51
4972 5614 4.840115 CCATTGCCATCCCTAATTTACCAT 59.160 41.667 0.00 0.00 0.00 3.55
4973 5615 4.222336 CCATTGCCATCCCTAATTTACCA 58.778 43.478 0.00 0.00 0.00 3.25
4974 5616 4.223144 ACCATTGCCATCCCTAATTTACC 58.777 43.478 0.00 0.00 0.00 2.85
4975 5617 5.869649 AACCATTGCCATCCCTAATTTAC 57.130 39.130 0.00 0.00 0.00 2.01
4976 5618 6.074648 CCTAACCATTGCCATCCCTAATTTA 58.925 40.000 0.00 0.00 0.00 1.40
4977 5619 4.901250 CCTAACCATTGCCATCCCTAATTT 59.099 41.667 0.00 0.00 0.00 1.82
4978 5620 4.482990 CCTAACCATTGCCATCCCTAATT 58.517 43.478 0.00 0.00 0.00 1.40
4979 5621 3.181418 CCCTAACCATTGCCATCCCTAAT 60.181 47.826 0.00 0.00 0.00 1.73
4980 5622 2.176798 CCCTAACCATTGCCATCCCTAA 59.823 50.000 0.00 0.00 0.00 2.69
4981 5623 1.780309 CCCTAACCATTGCCATCCCTA 59.220 52.381 0.00 0.00 0.00 3.53
4982 5624 0.557729 CCCTAACCATTGCCATCCCT 59.442 55.000 0.00 0.00 0.00 4.20
4983 5625 0.261696 ACCCTAACCATTGCCATCCC 59.738 55.000 0.00 0.00 0.00 3.85
4984 5626 3.525800 ATACCCTAACCATTGCCATCC 57.474 47.619 0.00 0.00 0.00 3.51
4985 5627 3.573967 CCAATACCCTAACCATTGCCATC 59.426 47.826 0.00 0.00 0.00 3.51
4986 5628 3.575805 CCAATACCCTAACCATTGCCAT 58.424 45.455 0.00 0.00 0.00 4.40
4987 5629 2.952702 GCCAATACCCTAACCATTGCCA 60.953 50.000 0.00 0.00 0.00 4.92
4988 5630 1.686587 GCCAATACCCTAACCATTGCC 59.313 52.381 0.00 0.00 0.00 4.52
4989 5631 1.336755 CGCCAATACCCTAACCATTGC 59.663 52.381 0.00 0.00 0.00 3.56
4990 5632 1.953686 CCGCCAATACCCTAACCATTG 59.046 52.381 0.00 0.00 0.00 2.82
4991 5633 1.133606 CCCGCCAATACCCTAACCATT 60.134 52.381 0.00 0.00 0.00 3.16
4992 5634 0.476771 CCCGCCAATACCCTAACCAT 59.523 55.000 0.00 0.00 0.00 3.55
4993 5635 0.915387 ACCCGCCAATACCCTAACCA 60.915 55.000 0.00 0.00 0.00 3.67
4994 5636 1.130777 TACCCGCCAATACCCTAACC 58.869 55.000 0.00 0.00 0.00 2.85
4995 5637 4.622260 TTATACCCGCCAATACCCTAAC 57.378 45.455 0.00 0.00 0.00 2.34
4996 5638 5.095809 AGATTATACCCGCCAATACCCTAA 58.904 41.667 0.00 0.00 0.00 2.69
4997 5639 4.691238 AGATTATACCCGCCAATACCCTA 58.309 43.478 0.00 0.00 0.00 3.53
4998 5640 3.518303 GAGATTATACCCGCCAATACCCT 59.482 47.826 0.00 0.00 0.00 4.34
4999 5641 3.370209 GGAGATTATACCCGCCAATACCC 60.370 52.174 0.00 0.00 0.00 3.69
5000 5642 3.518303 AGGAGATTATACCCGCCAATACC 59.482 47.826 0.00 0.00 0.00 2.73
5001 5643 4.820894 AGGAGATTATACCCGCCAATAC 57.179 45.455 0.00 0.00 0.00 1.89
5002 5644 4.841813 TGAAGGAGATTATACCCGCCAATA 59.158 41.667 0.00 0.00 0.00 1.90
5003 5645 3.650942 TGAAGGAGATTATACCCGCCAAT 59.349 43.478 0.00 0.00 0.00 3.16
5004 5646 3.042682 TGAAGGAGATTATACCCGCCAA 58.957 45.455 0.00 0.00 0.00 4.52
5005 5647 2.684943 TGAAGGAGATTATACCCGCCA 58.315 47.619 0.00 0.00 0.00 5.69
5006 5648 3.400255 GTTGAAGGAGATTATACCCGCC 58.600 50.000 0.00 0.00 0.00 6.13
5007 5649 3.400255 GGTTGAAGGAGATTATACCCGC 58.600 50.000 0.00 0.00 0.00 6.13
5008 5650 3.389983 TGGGTTGAAGGAGATTATACCCG 59.610 47.826 0.00 0.00 43.17 5.28
5009 5651 5.382664 TTGGGTTGAAGGAGATTATACCC 57.617 43.478 0.00 0.00 41.71 3.69
5010 5652 5.593095 GGTTTGGGTTGAAGGAGATTATACC 59.407 44.000 0.00 0.00 0.00 2.73
5011 5653 5.593095 GGGTTTGGGTTGAAGGAGATTATAC 59.407 44.000 0.00 0.00 0.00 1.47
5012 5654 5.254267 TGGGTTTGGGTTGAAGGAGATTATA 59.746 40.000 0.00 0.00 0.00 0.98
5013 5655 4.045334 TGGGTTTGGGTTGAAGGAGATTAT 59.955 41.667 0.00 0.00 0.00 1.28
5014 5656 3.399644 TGGGTTTGGGTTGAAGGAGATTA 59.600 43.478 0.00 0.00 0.00 1.75
5015 5657 2.178984 TGGGTTTGGGTTGAAGGAGATT 59.821 45.455 0.00 0.00 0.00 2.40
5016 5658 1.786441 TGGGTTTGGGTTGAAGGAGAT 59.214 47.619 0.00 0.00 0.00 2.75
5017 5659 1.227249 TGGGTTTGGGTTGAAGGAGA 58.773 50.000 0.00 0.00 0.00 3.71
5018 5660 2.309136 ATGGGTTTGGGTTGAAGGAG 57.691 50.000 0.00 0.00 0.00 3.69
5019 5661 2.225167 GGTATGGGTTTGGGTTGAAGGA 60.225 50.000 0.00 0.00 0.00 3.36
5020 5662 2.176045 GGTATGGGTTTGGGTTGAAGG 58.824 52.381 0.00 0.00 0.00 3.46
5021 5663 2.176045 GGGTATGGGTTTGGGTTGAAG 58.824 52.381 0.00 0.00 0.00 3.02
5022 5664 1.503784 TGGGTATGGGTTTGGGTTGAA 59.496 47.619 0.00 0.00 0.00 2.69
5023 5665 1.158904 TGGGTATGGGTTTGGGTTGA 58.841 50.000 0.00 0.00 0.00 3.18
5024 5666 1.262417 GTGGGTATGGGTTTGGGTTG 58.738 55.000 0.00 0.00 0.00 3.77
5025 5667 0.861155 TGTGGGTATGGGTTTGGGTT 59.139 50.000 0.00 0.00 0.00 4.11
5026 5668 0.407918 CTGTGGGTATGGGTTTGGGT 59.592 55.000 0.00 0.00 0.00 4.51
5027 5669 0.701731 TCTGTGGGTATGGGTTTGGG 59.298 55.000 0.00 0.00 0.00 4.12
5028 5670 2.560981 GTTTCTGTGGGTATGGGTTTGG 59.439 50.000 0.00 0.00 0.00 3.28
5029 5671 2.227865 CGTTTCTGTGGGTATGGGTTTG 59.772 50.000 0.00 0.00 0.00 2.93
5030 5672 2.510613 CGTTTCTGTGGGTATGGGTTT 58.489 47.619 0.00 0.00 0.00 3.27
5031 5673 1.884928 GCGTTTCTGTGGGTATGGGTT 60.885 52.381 0.00 0.00 0.00 4.11
5032 5674 0.322187 GCGTTTCTGTGGGTATGGGT 60.322 55.000 0.00 0.00 0.00 4.51
5033 5675 0.322098 TGCGTTTCTGTGGGTATGGG 60.322 55.000 0.00 0.00 0.00 4.00
5034 5676 1.086696 CTGCGTTTCTGTGGGTATGG 58.913 55.000 0.00 0.00 0.00 2.74
5035 5677 1.086696 CCTGCGTTTCTGTGGGTATG 58.913 55.000 0.00 0.00 0.00 2.39
5036 5678 0.690762 ACCTGCGTTTCTGTGGGTAT 59.309 50.000 0.00 0.00 0.00 2.73
5037 5679 1.274167 CTACCTGCGTTTCTGTGGGTA 59.726 52.381 0.00 0.00 0.00 3.69
5038 5680 0.034896 CTACCTGCGTTTCTGTGGGT 59.965 55.000 0.00 0.00 0.00 4.51
5039 5681 1.298859 GCTACCTGCGTTTCTGTGGG 61.299 60.000 0.00 0.00 0.00 4.61
5040 5682 2.162716 GCTACCTGCGTTTCTGTGG 58.837 57.895 0.00 0.00 0.00 4.17
5051 5693 2.188994 GCCTGCTGGAGCTACCTG 59.811 66.667 14.77 0.00 42.66 4.00
5052 5694 3.465403 CGCCTGCTGGAGCTACCT 61.465 66.667 14.77 0.00 42.66 3.08
5053 5695 3.775654 ACGCCTGCTGGAGCTACC 61.776 66.667 14.77 0.00 42.66 3.18
5054 5696 2.510238 CACGCCTGCTGGAGCTAC 60.510 66.667 14.77 0.00 42.66 3.58
5055 5697 4.457496 GCACGCCTGCTGGAGCTA 62.457 66.667 14.77 0.00 40.63 3.32
5070 5712 0.521291 GTGCGCACTGGAATTTAGCA 59.479 50.000 32.55 0.00 0.00 3.49
5088 5732 3.595758 GTTGCTTGTGCTGGGCGT 61.596 61.111 0.00 0.00 40.48 5.68
5101 5747 6.446318 TCTATGTTTGAGTGGAAAATGTTGC 58.554 36.000 0.00 0.00 0.00 4.17
5119 5765 6.998074 TGTGTTTGATCTTCTTGGTTCTATGT 59.002 34.615 0.00 0.00 0.00 2.29
5239 5887 7.858879 ACGTTTGTTGTATTTGTTGACTATTCC 59.141 33.333 0.00 0.00 0.00 3.01
5240 5888 8.776680 ACGTTTGTTGTATTTGTTGACTATTC 57.223 30.769 0.00 0.00 0.00 1.75
5253 5901 7.699566 AGTTTGATGTTGTACGTTTGTTGTAT 58.300 30.769 0.00 0.00 0.00 2.29
5287 5937 2.682846 GTGGTCATGGGATGGGCA 59.317 61.111 0.00 0.00 0.00 5.36
5308 5958 4.509600 GCTTCAAAAGGATCTAGTCGATGG 59.490 45.833 0.00 0.00 30.84 3.51
5347 5997 2.100749 TCTATCATGCCATTCGACGTGT 59.899 45.455 0.00 0.00 0.00 4.49
5393 6043 3.844090 GAGTGCGGAGGAGGGCTC 61.844 72.222 0.00 0.00 0.00 4.70
5436 6086 6.995091 GTGGGCAAGATTTAGACTATTCTCAT 59.005 38.462 0.00 0.00 32.75 2.90
5616 6268 5.534207 AACTTGATTTCCACAATGCTCAA 57.466 34.783 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.