Multiple sequence alignment - TraesCS3A01G148000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G148000 chr3A 100.000 2252 0 0 1 2252 130897595 130895344 0.000000e+00 4159.0
1 TraesCS3A01G148000 chr3A 96.707 577 15 2 1679 2252 719113347 719113922 0.000000e+00 957.0
2 TraesCS3A01G148000 chr3A 84.615 494 31 12 949 1408 128164891 128165373 1.230000e-122 449.0
3 TraesCS3A01G148000 chr3A 77.652 264 37 10 427 682 128164398 128164647 8.390000e-30 141.0
4 TraesCS3A01G148000 chr3B 92.579 822 44 2 557 1361 175953606 175952785 0.000000e+00 1164.0
5 TraesCS3A01G148000 chr3B 89.796 539 50 4 1677 2210 22355400 22354862 0.000000e+00 686.0
6 TraesCS3A01G148000 chr3B 84.959 492 25 19 949 1407 173558446 173558921 9.480000e-124 453.0
7 TraesCS3A01G148000 chr3B 97.024 168 5 0 1428 1595 783212874 783212707 1.320000e-72 283.0
8 TraesCS3A01G148000 chr3B 95.954 173 7 0 386 558 175953829 175953657 4.740000e-72 281.0
9 TraesCS3A01G148000 chr3B 95.376 173 8 0 1435 1607 178399245 178399073 2.200000e-70 276.0
10 TraesCS3A01G148000 chr3B 78.397 287 43 15 438 711 173557926 173558206 3.850000e-38 169.0
11 TraesCS3A01G148000 chr5A 96.701 576 15 2 1679 2251 168224095 168223521 0.000000e+00 955.0
12 TraesCS3A01G148000 chr5A 82.609 69 9 2 22 87 444049081 444049149 8.690000e-05 58.4
13 TraesCS3A01G148000 chr6B 94.983 578 23 3 1678 2252 33523371 33522797 0.000000e+00 902.0
14 TraesCS3A01G148000 chr6B 90.328 579 52 2 1676 2251 129761151 129761728 0.000000e+00 756.0
15 TraesCS3A01G148000 chr1B 94.281 577 28 2 1679 2252 577994338 577994912 0.000000e+00 878.0
16 TraesCS3A01G148000 chr5B 93.804 581 31 3 1676 2252 533458894 533458315 0.000000e+00 869.0
17 TraesCS3A01G148000 chr5B 96.067 178 6 1 1420 1596 387365120 387364943 2.830000e-74 289.0
18 TraesCS3A01G148000 chr5B 97.059 170 2 3 1428 1595 273715504 273715672 1.320000e-72 283.0
19 TraesCS3A01G148000 chr7B 93.080 578 33 5 1678 2251 5177554 5178128 0.000000e+00 839.0
20 TraesCS3A01G148000 chr7B 93.158 190 10 3 1406 1593 537509146 537509334 2.200000e-70 276.0
21 TraesCS3A01G148000 chr1A 91.972 573 42 2 1677 2246 99740322 99740893 0.000000e+00 800.0
22 TraesCS3A01G148000 chr1A 96.491 171 6 0 1429 1599 493543626 493543796 1.320000e-72 283.0
23 TraesCS3A01G148000 chr3D 85.451 488 22 16 954 1408 121977361 121977832 1.580000e-126 462.0
24 TraesCS3A01G148000 chr3D 85.185 243 19 4 232 465 123376013 123375779 1.340000e-57 233.0
25 TraesCS3A01G148000 chr3D 92.169 166 9 1 555 720 123368390 123368229 4.840000e-57 231.0
26 TraesCS3A01G148000 chr3D 90.441 136 12 1 48 183 123377719 123377585 6.390000e-41 178.0
27 TraesCS3A01G148000 chr3D 84.783 138 8 5 587 720 121976994 121977122 2.350000e-25 126.0
28 TraesCS3A01G148000 chr3D 96.491 57 2 0 502 558 123368483 123368427 6.620000e-16 95.3
29 TraesCS3A01G148000 chr2B 97.590 166 4 0 1427 1592 207716323 207716158 3.660000e-73 285.0
30 TraesCS3A01G148000 chr2B 97.590 166 4 0 1427 1592 207733538 207733373 3.660000e-73 285.0
31 TraesCS3A01G148000 chr2B 94.054 185 8 3 1425 1608 344866733 344866551 6.130000e-71 278.0
32 TraesCS3A01G148000 chr2B 96.000 50 2 0 48 97 238969443 238969394 5.160000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G148000 chr3A 130895344 130897595 2251 True 4159.0 4159 100.0000 1 2252 1 chr3A.!!$R1 2251
1 TraesCS3A01G148000 chr3A 719113347 719113922 575 False 957.0 957 96.7070 1679 2252 1 chr3A.!!$F1 573
2 TraesCS3A01G148000 chr3A 128164398 128165373 975 False 295.0 449 81.1335 427 1408 2 chr3A.!!$F2 981
3 TraesCS3A01G148000 chr3B 175952785 175953829 1044 True 722.5 1164 94.2665 386 1361 2 chr3B.!!$R4 975
4 TraesCS3A01G148000 chr3B 22354862 22355400 538 True 686.0 686 89.7960 1677 2210 1 chr3B.!!$R1 533
5 TraesCS3A01G148000 chr3B 173557926 173558921 995 False 311.0 453 81.6780 438 1407 2 chr3B.!!$F1 969
6 TraesCS3A01G148000 chr5A 168223521 168224095 574 True 955.0 955 96.7010 1679 2251 1 chr5A.!!$R1 572
7 TraesCS3A01G148000 chr6B 33522797 33523371 574 True 902.0 902 94.9830 1678 2252 1 chr6B.!!$R1 574
8 TraesCS3A01G148000 chr6B 129761151 129761728 577 False 756.0 756 90.3280 1676 2251 1 chr6B.!!$F1 575
9 TraesCS3A01G148000 chr1B 577994338 577994912 574 False 878.0 878 94.2810 1679 2252 1 chr1B.!!$F1 573
10 TraesCS3A01G148000 chr5B 533458315 533458894 579 True 869.0 869 93.8040 1676 2252 1 chr5B.!!$R2 576
11 TraesCS3A01G148000 chr7B 5177554 5178128 574 False 839.0 839 93.0800 1678 2251 1 chr7B.!!$F1 573
12 TraesCS3A01G148000 chr1A 99740322 99740893 571 False 800.0 800 91.9720 1677 2246 1 chr1A.!!$F1 569
13 TraesCS3A01G148000 chr3D 121976994 121977832 838 False 294.0 462 85.1170 587 1408 2 chr3D.!!$F1 821
14 TraesCS3A01G148000 chr3D 123375779 123377719 1940 True 205.5 233 87.8130 48 465 2 chr3D.!!$R2 417

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
424 1962 0.17668 GAGGTCAGGCATCACGTGAT 59.823 55.0 25.18 25.18 44.46 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1286 2955 1.142748 CTCGTCTGCTCCATGGTCC 59.857 63.158 12.58 4.51 0.0 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 4.319839 GCTGTAGCTCAAAAACTCCACTTC 60.320 45.833 0.00 0.00 38.21 3.01
97 98 5.036117 TGTAGCTCAAAAACTCCACTTCT 57.964 39.130 0.00 0.00 0.00 2.85
105 106 4.344359 AAAACTCCACTTCTGAGTCCTC 57.656 45.455 0.00 0.00 42.10 3.71
138 139 2.530701 CTACACCTCTTCAGTCCACCT 58.469 52.381 0.00 0.00 0.00 4.00
161 162 2.043652 GGTCCCATGCATGCCTGT 60.044 61.111 21.69 2.04 0.00 4.00
187 188 2.656560 GCATGACGAGTAGTTCCAGT 57.343 50.000 0.00 0.00 0.00 4.00
188 189 2.960819 GCATGACGAGTAGTTCCAGTT 58.039 47.619 0.00 0.00 0.00 3.16
189 190 4.106029 GCATGACGAGTAGTTCCAGTTA 57.894 45.455 0.00 0.00 0.00 2.24
190 191 4.106197 GCATGACGAGTAGTTCCAGTTAG 58.894 47.826 0.00 0.00 0.00 2.34
191 192 4.380655 GCATGACGAGTAGTTCCAGTTAGT 60.381 45.833 0.00 0.00 0.00 2.24
192 193 5.710984 CATGACGAGTAGTTCCAGTTAGTT 58.289 41.667 0.00 0.00 0.00 2.24
193 194 5.117355 TGACGAGTAGTTCCAGTTAGTTG 57.883 43.478 0.00 0.00 0.00 3.16
194 195 4.022589 TGACGAGTAGTTCCAGTTAGTTGG 60.023 45.833 0.00 0.00 39.70 3.77
195 196 3.257624 ACGAGTAGTTCCAGTTAGTTGGG 59.742 47.826 0.00 0.00 38.81 4.12
215 216 1.153588 GGCCATGAAACCATTGCCG 60.154 57.895 0.00 0.00 41.21 5.69
216 217 1.591183 GCCATGAAACCATTGCCGT 59.409 52.632 0.00 0.00 29.36 5.68
219 220 1.133025 CCATGAAACCATTGCCGTCTC 59.867 52.381 0.00 0.00 0.00 3.36
271 1809 1.920051 CCGCTCAATCGATCACGTG 59.080 57.895 9.94 9.94 40.69 4.49
278 1816 3.727726 TCAATCGATCACGTGCCATTAT 58.272 40.909 11.67 0.00 40.69 1.28
317 1855 4.137872 GCGCATGCTGGCCATTGT 62.138 61.111 17.13 0.00 38.39 2.71
318 1856 2.574929 CGCATGCTGGCCATTGTT 59.425 55.556 17.13 0.00 29.71 2.83
324 1862 0.322366 TGCTGGCCATTGTTCGATCA 60.322 50.000 5.51 0.00 0.00 2.92
326 1864 1.406539 GCTGGCCATTGTTCGATCAAT 59.593 47.619 5.51 14.55 38.38 2.57
333 1871 4.734695 GCCATTGTTCGATCAATCCTTTCC 60.735 45.833 16.89 1.77 36.10 3.13
334 1872 4.398988 CCATTGTTCGATCAATCCTTTCCA 59.601 41.667 16.89 0.00 36.10 3.53
337 1875 4.002982 TGTTCGATCAATCCTTTCCACAG 58.997 43.478 0.00 0.00 0.00 3.66
343 1881 4.982241 TCAATCCTTTCCACAGAGAAGT 57.018 40.909 0.00 0.00 0.00 3.01
348 1886 2.353208 CCTTTCCACAGAGAAGTCCTCG 60.353 54.545 0.00 0.00 46.49 4.63
350 1888 2.516227 TCCACAGAGAAGTCCTCGAT 57.484 50.000 0.00 0.00 46.49 3.59
351 1889 2.095461 TCCACAGAGAAGTCCTCGATG 58.905 52.381 0.00 0.00 46.49 3.84
363 1901 4.508662 AGTCCTCGATGAACAAGAAATCC 58.491 43.478 0.00 0.00 0.00 3.01
376 1914 2.636830 AGAAATCCGGATGAAGCACTG 58.363 47.619 19.95 0.00 0.00 3.66
378 1916 0.911769 AATCCGGATGAAGCACTGGA 59.088 50.000 19.95 0.00 44.24 3.86
379 1917 1.135094 ATCCGGATGAAGCACTGGAT 58.865 50.000 18.33 0.00 44.47 3.41
380 1918 0.178767 TCCGGATGAAGCACTGGATG 59.821 55.000 0.00 0.00 36.75 3.51
381 1919 0.816825 CCGGATGAAGCACTGGATGG 60.817 60.000 0.00 0.00 34.76 3.51
382 1920 0.816825 CGGATGAAGCACTGGATGGG 60.817 60.000 0.00 0.00 0.00 4.00
383 1921 0.257039 GGATGAAGCACTGGATGGGT 59.743 55.000 0.00 0.00 0.00 4.51
384 1922 1.673168 GATGAAGCACTGGATGGGTC 58.327 55.000 0.00 0.00 0.00 4.46
424 1962 0.176680 GAGGTCAGGCATCACGTGAT 59.823 55.000 25.18 25.18 44.46 3.06
479 2025 2.030363 AGATCGATCGTCTGATTCCAGC 60.030 50.000 19.33 0.00 40.20 4.85
480 2026 0.385751 TCGATCGTCTGATTCCAGCC 59.614 55.000 15.94 0.00 40.20 4.85
484 2030 1.489481 TCGTCTGATTCCAGCCAGAT 58.511 50.000 0.00 0.00 40.95 2.90
487 2033 2.570135 GTCTGATTCCAGCCAGATTCC 58.430 52.381 0.00 0.00 40.95 3.01
488 2034 2.092753 GTCTGATTCCAGCCAGATTCCA 60.093 50.000 0.00 0.00 40.95 3.53
489 2035 2.781757 TCTGATTCCAGCCAGATTCCAT 59.218 45.455 0.00 0.00 40.20 3.41
552 2098 0.251165 AAAACACGGGCCTGCTATGT 60.251 50.000 12.89 5.91 0.00 2.29
585 2183 1.867615 GCAGCACAGACAGAGCTTG 59.132 57.895 0.00 0.00 41.66 4.01
631 2235 1.207593 GTCGTTGACCTGCATGCAC 59.792 57.895 18.46 8.19 0.00 4.57
777 2386 2.280524 TACACGGCCTGCACACAC 60.281 61.111 0.00 0.00 0.00 3.82
821 2430 3.375299 CCACAAAGTTATAGCTGGCTCAC 59.625 47.826 0.00 0.00 0.00 3.51
852 2461 4.201685 CCTCGTGATTAACTAACCAAAGCG 60.202 45.833 0.00 0.00 0.00 4.68
881 2490 0.727398 GATATTTCCTATGCCGCGCC 59.273 55.000 0.00 0.00 0.00 6.53
937 2555 1.029408 GGTGTGACTGTGTGGTGCAA 61.029 55.000 0.00 0.00 0.00 4.08
1286 2955 3.003482 CCGTACGTCTAATCTTCTCCCTG 59.997 52.174 15.21 0.00 0.00 4.45
1361 3034 4.900684 TCTACGATGGACCTGAGAGATAG 58.099 47.826 0.00 0.00 0.00 2.08
1375 3061 9.835389 ACCTGAGAGATAGTATTATCCGTATAC 57.165 37.037 1.84 0.00 37.05 1.47
1379 3065 8.905660 AGAGATAGTATTATCCGTATACGCAT 57.094 34.615 19.86 13.49 37.05 4.73
1382 3068 9.217278 AGATAGTATTATCCGTATACGCATAGG 57.783 37.037 19.86 5.96 37.05 2.57
1387 3073 2.493035 TCCGTATACGCATAGGTCGAA 58.507 47.619 19.86 0.00 38.18 3.71
1409 3095 1.859383 GCTAGCTAGCTACCAAGTGC 58.141 55.000 33.71 16.66 45.62 4.40
1410 3096 1.410882 GCTAGCTAGCTACCAAGTGCT 59.589 52.381 33.71 7.89 45.62 4.40
1411 3097 2.159028 GCTAGCTAGCTACCAAGTGCTT 60.159 50.000 33.71 0.00 45.62 3.91
1412 3098 2.393271 AGCTAGCTACCAAGTGCTTG 57.607 50.000 17.69 5.03 40.35 4.01
1413 3099 0.729690 GCTAGCTACCAAGTGCTTGC 59.270 55.000 7.70 5.78 46.40 4.01
1414 3100 2.393271 CTAGCTACCAAGTGCTTGCT 57.607 50.000 6.42 3.58 40.35 3.91
1415 3101 3.526931 CTAGCTACCAAGTGCTTGCTA 57.473 47.619 6.42 4.47 40.35 3.49
1416 3102 4.065321 CTAGCTACCAAGTGCTTGCTAT 57.935 45.455 6.42 0.00 40.35 2.97
1417 3103 2.636830 AGCTACCAAGTGCTTGCTATG 58.363 47.619 6.42 0.00 39.16 2.23
1418 3104 2.237143 AGCTACCAAGTGCTTGCTATGA 59.763 45.455 6.42 0.00 39.16 2.15
1419 3105 2.352960 GCTACCAAGTGCTTGCTATGAC 59.647 50.000 6.42 0.00 39.16 3.06
1420 3106 2.566833 ACCAAGTGCTTGCTATGACA 57.433 45.000 6.42 0.00 39.16 3.58
1421 3107 3.077484 ACCAAGTGCTTGCTATGACAT 57.923 42.857 6.42 0.00 39.16 3.06
1422 3108 2.751259 ACCAAGTGCTTGCTATGACATG 59.249 45.455 6.42 0.00 39.16 3.21
1423 3109 2.098607 CCAAGTGCTTGCTATGACATGG 59.901 50.000 6.42 0.00 39.16 3.66
1424 3110 1.386533 AGTGCTTGCTATGACATGGC 58.613 50.000 16.28 16.28 37.27 4.40
1425 3111 1.097232 GTGCTTGCTATGACATGGCA 58.903 50.000 21.22 21.22 45.39 4.92
1426 3112 1.679680 GTGCTTGCTATGACATGGCAT 59.320 47.619 24.85 20.10 46.32 4.40
1427 3113 2.880268 GTGCTTGCTATGACATGGCATA 59.120 45.455 24.85 20.19 46.32 3.14
1428 3114 3.504906 GTGCTTGCTATGACATGGCATAT 59.495 43.478 24.85 0.00 46.32 1.78
1429 3115 4.696877 GTGCTTGCTATGACATGGCATATA 59.303 41.667 24.85 11.16 46.32 0.86
1430 3116 5.356190 GTGCTTGCTATGACATGGCATATAT 59.644 40.000 24.85 0.00 46.32 0.86
1431 3117 5.947566 TGCTTGCTATGACATGGCATATATT 59.052 36.000 24.85 0.00 46.32 1.28
1432 3118 6.094464 TGCTTGCTATGACATGGCATATATTC 59.906 38.462 24.85 11.43 46.32 1.75
1433 3119 6.318144 GCTTGCTATGACATGGCATATATTCT 59.682 38.462 24.85 0.00 46.32 2.40
1434 3120 7.466996 GCTTGCTATGACATGGCATATATTCTC 60.467 40.741 24.85 6.44 46.32 2.87
1435 3121 7.191593 TGCTATGACATGGCATATATTCTCT 57.808 36.000 21.58 0.00 42.07 3.10
1436 3122 7.270779 TGCTATGACATGGCATATATTCTCTC 58.729 38.462 21.58 4.92 42.07 3.20
1437 3123 6.705381 GCTATGACATGGCATATATTCTCTCC 59.295 42.308 21.58 0.00 36.68 3.71
1438 3124 5.077134 TGACATGGCATATATTCTCTCCG 57.923 43.478 0.00 0.00 0.00 4.63
1439 3125 4.528206 TGACATGGCATATATTCTCTCCGT 59.472 41.667 0.00 0.00 0.00 4.69
1440 3126 5.012046 TGACATGGCATATATTCTCTCCGTT 59.988 40.000 0.00 0.00 0.00 4.44
1441 3127 5.482908 ACATGGCATATATTCTCTCCGTTC 58.517 41.667 0.00 0.00 0.00 3.95
1442 3128 4.537135 TGGCATATATTCTCTCCGTTCC 57.463 45.455 0.00 0.00 0.00 3.62
1443 3129 3.260884 TGGCATATATTCTCTCCGTTCCC 59.739 47.826 0.00 0.00 0.00 3.97
1444 3130 3.260884 GGCATATATTCTCTCCGTTCCCA 59.739 47.826 0.00 0.00 0.00 4.37
1445 3131 4.262894 GGCATATATTCTCTCCGTTCCCAA 60.263 45.833 0.00 0.00 0.00 4.12
1446 3132 5.305585 GCATATATTCTCTCCGTTCCCAAA 58.694 41.667 0.00 0.00 0.00 3.28
1447 3133 5.940470 GCATATATTCTCTCCGTTCCCAAAT 59.060 40.000 0.00 0.00 0.00 2.32
1448 3134 7.103641 GCATATATTCTCTCCGTTCCCAAATA 58.896 38.462 0.00 0.00 0.00 1.40
1449 3135 7.064728 GCATATATTCTCTCCGTTCCCAAATAC 59.935 40.741 0.00 0.00 0.00 1.89
1450 3136 6.749036 ATATTCTCTCCGTTCCCAAATACT 57.251 37.500 0.00 0.00 0.00 2.12
1451 3137 4.903045 TTCTCTCCGTTCCCAAATACTT 57.097 40.909 0.00 0.00 0.00 2.24
1452 3138 4.202245 TCTCTCCGTTCCCAAATACTTG 57.798 45.455 0.00 0.00 0.00 3.16
1453 3139 3.581332 TCTCTCCGTTCCCAAATACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
1454 3140 3.933332 CTCTCCGTTCCCAAATACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
1455 3141 3.581332 TCTCCGTTCCCAAATACTTGTCT 59.419 43.478 0.00 0.00 0.00 3.41
1456 3142 4.041198 TCTCCGTTCCCAAATACTTGTCTT 59.959 41.667 0.00 0.00 0.00 3.01
1457 3143 4.721132 TCCGTTCCCAAATACTTGTCTTT 58.279 39.130 0.00 0.00 0.00 2.52
1458 3144 5.134661 TCCGTTCCCAAATACTTGTCTTTT 58.865 37.500 0.00 0.00 0.00 2.27
1459 3145 5.595133 TCCGTTCCCAAATACTTGTCTTTTT 59.405 36.000 0.00 0.00 0.00 1.94
1460 3146 6.771749 TCCGTTCCCAAATACTTGTCTTTTTA 59.228 34.615 0.00 0.00 0.00 1.52
1461 3147 7.040961 TCCGTTCCCAAATACTTGTCTTTTTAG 60.041 37.037 0.00 0.00 0.00 1.85
1462 3148 7.081976 CGTTCCCAAATACTTGTCTTTTTAGG 58.918 38.462 0.00 0.00 0.00 2.69
1463 3149 6.584185 TCCCAAATACTTGTCTTTTTAGGC 57.416 37.500 0.00 0.00 0.00 3.93
1464 3150 6.071984 TCCCAAATACTTGTCTTTTTAGGCA 58.928 36.000 0.00 0.00 0.00 4.75
1465 3151 6.723977 TCCCAAATACTTGTCTTTTTAGGCAT 59.276 34.615 0.00 0.00 0.00 4.40
1466 3152 7.234577 TCCCAAATACTTGTCTTTTTAGGCATT 59.765 33.333 0.00 0.00 0.00 3.56
1467 3153 7.877612 CCCAAATACTTGTCTTTTTAGGCATTT 59.122 33.333 0.00 0.00 0.00 2.32
1468 3154 8.925700 CCAAATACTTGTCTTTTTAGGCATTTC 58.074 33.333 0.00 0.00 0.00 2.17
1469 3155 9.474920 CAAATACTTGTCTTTTTAGGCATTTCA 57.525 29.630 0.00 0.00 0.00 2.69
1473 3159 8.369218 ACTTGTCTTTTTAGGCATTTCAAATG 57.631 30.769 5.68 5.68 0.00 2.32
1474 3160 8.203485 ACTTGTCTTTTTAGGCATTTCAAATGA 58.797 29.630 14.65 0.00 0.00 2.57
1475 3161 8.954950 TTGTCTTTTTAGGCATTTCAAATGAA 57.045 26.923 14.65 0.00 0.00 2.57
1476 3162 8.364129 TGTCTTTTTAGGCATTTCAAATGAAC 57.636 30.769 14.65 5.78 33.13 3.18
1477 3163 8.203485 TGTCTTTTTAGGCATTTCAAATGAACT 58.797 29.630 14.65 12.60 33.13 3.01
1478 3164 8.703336 GTCTTTTTAGGCATTTCAAATGAACTC 58.297 33.333 14.65 0.37 33.13 3.01
1479 3165 8.420222 TCTTTTTAGGCATTTCAAATGAACTCA 58.580 29.630 14.65 0.22 33.13 3.41
1480 3166 8.954950 TTTTTAGGCATTTCAAATGAACTCAA 57.045 26.923 14.65 6.13 33.13 3.02
1481 3167 7.945033 TTTAGGCATTTCAAATGAACTCAAC 57.055 32.000 14.65 0.00 33.13 3.18
1482 3168 5.534207 AGGCATTTCAAATGAACTCAACA 57.466 34.783 14.65 0.00 33.13 3.33
1483 3169 6.105397 AGGCATTTCAAATGAACTCAACAT 57.895 33.333 14.65 0.00 33.13 2.71
1484 3170 7.230849 AGGCATTTCAAATGAACTCAACATA 57.769 32.000 14.65 0.00 33.13 2.29
1485 3171 7.092716 AGGCATTTCAAATGAACTCAACATAC 58.907 34.615 14.65 0.00 33.13 2.39
1486 3172 6.033831 GGCATTTCAAATGAACTCAACATACG 59.966 38.462 14.65 0.00 33.13 3.06
1487 3173 6.033831 GCATTTCAAATGAACTCAACATACGG 59.966 38.462 14.65 0.00 33.13 4.02
1488 3174 6.869315 TTTCAAATGAACTCAACATACGGA 57.131 33.333 0.00 0.00 33.13 4.69
1489 3175 7.447374 TTTCAAATGAACTCAACATACGGAT 57.553 32.000 0.00 0.00 33.13 4.18
1490 3176 6.421377 TCAAATGAACTCAACATACGGATG 57.579 37.500 5.94 5.94 39.16 3.51
1491 3177 7.040755 TTTCAAATGAACTCAACATACGGATGT 60.041 33.333 7.68 7.68 39.82 3.06
1492 3178 7.100409 TCAAATGAACTCAACATACGGATGTA 58.900 34.615 15.10 0.00 45.93 2.29
1493 3179 7.768582 TCAAATGAACTCAACATACGGATGTAT 59.231 33.333 15.10 0.00 45.93 2.29
1532 3218 6.648725 AGTGTAGATTCACTCATTTTACGC 57.351 37.500 0.00 0.00 44.07 4.42
1533 3219 5.581085 AGTGTAGATTCACTCATTTTACGCC 59.419 40.000 0.00 0.00 44.07 5.68
1534 3220 4.565166 TGTAGATTCACTCATTTTACGCCG 59.435 41.667 0.00 0.00 0.00 6.46
1535 3221 3.596214 AGATTCACTCATTTTACGCCGT 58.404 40.909 0.00 0.00 0.00 5.68
1536 3222 4.751060 AGATTCACTCATTTTACGCCGTA 58.249 39.130 0.00 0.00 0.00 4.02
1537 3223 5.357257 AGATTCACTCATTTTACGCCGTAT 58.643 37.500 0.00 0.00 0.00 3.06
1538 3224 4.850859 TTCACTCATTTTACGCCGTATG 57.149 40.909 0.00 0.00 0.00 2.39
1539 3225 3.852286 TCACTCATTTTACGCCGTATGT 58.148 40.909 0.00 0.00 0.00 2.29
1540 3226 4.996344 TCACTCATTTTACGCCGTATGTA 58.004 39.130 0.00 0.00 0.00 2.29
1541 3227 5.038683 TCACTCATTTTACGCCGTATGTAG 58.961 41.667 0.00 0.00 0.00 2.74
1542 3228 4.802039 CACTCATTTTACGCCGTATGTAGT 59.198 41.667 0.00 0.00 0.00 2.73
1543 3229 5.039333 ACTCATTTTACGCCGTATGTAGTC 58.961 41.667 0.00 0.00 0.00 2.59
1544 3230 4.996344 TCATTTTACGCCGTATGTAGTCA 58.004 39.130 0.00 0.00 0.00 3.41
1545 3231 4.799949 TCATTTTACGCCGTATGTAGTCAC 59.200 41.667 0.00 0.00 0.00 3.67
1546 3232 4.439305 TTTTACGCCGTATGTAGTCACT 57.561 40.909 0.00 0.00 0.00 3.41
1547 3233 4.439305 TTTACGCCGTATGTAGTCACTT 57.561 40.909 0.00 0.00 0.00 3.16
1548 3234 2.273370 ACGCCGTATGTAGTCACTTG 57.727 50.000 0.00 0.00 0.00 3.16
1549 3235 1.542915 ACGCCGTATGTAGTCACTTGT 59.457 47.619 0.00 0.00 0.00 3.16
1550 3236 2.029649 ACGCCGTATGTAGTCACTTGTT 60.030 45.455 0.00 0.00 0.00 2.83
1551 3237 2.344441 CGCCGTATGTAGTCACTTGTTG 59.656 50.000 0.00 0.00 0.00 3.33
1552 3238 3.581755 GCCGTATGTAGTCACTTGTTGA 58.418 45.455 0.00 0.00 0.00 3.18
1553 3239 3.991773 GCCGTATGTAGTCACTTGTTGAA 59.008 43.478 0.00 0.00 35.39 2.69
1554 3240 4.449743 GCCGTATGTAGTCACTTGTTGAAA 59.550 41.667 0.00 0.00 35.39 2.69
1555 3241 5.121768 GCCGTATGTAGTCACTTGTTGAAAT 59.878 40.000 0.00 0.00 35.39 2.17
1556 3242 6.672357 GCCGTATGTAGTCACTTGTTGAAATC 60.672 42.308 0.00 0.00 35.39 2.17
1557 3243 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
1558 3244 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
1559 3245 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
1560 3246 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
1561 3247 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
1562 3248 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
1563 3249 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
1564 3250 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
1565 3251 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
1566 3252 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
1567 3253 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
1568 3254 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
1569 3255 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
1570 3256 9.050601 ACTTGTTGAAATCTCTAGAAAGACAAG 57.949 33.333 17.75 17.75 33.18 3.16
1571 3257 8.964476 TTGTTGAAATCTCTAGAAAGACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
1582 3268 9.291664 CTCTAGAAAGACAAGTATTTAGGAACG 57.708 37.037 0.00 0.00 0.00 3.95
1583 3269 8.248945 TCTAGAAAGACAAGTATTTAGGAACGG 58.751 37.037 0.00 0.00 0.00 4.44
1584 3270 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
1585 3271 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
1586 3272 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
1587 3273 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
1588 3274 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
1589 3275 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
1590 3276 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
1591 3277 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
1592 3278 5.713807 AGTATTTAGGAACGGAGGGAGTAT 58.286 41.667 0.00 0.00 0.00 2.12
1593 3279 6.856757 AGTATTTAGGAACGGAGGGAGTATA 58.143 40.000 0.00 0.00 0.00 1.47
1594 3280 7.477008 AGTATTTAGGAACGGAGGGAGTATAT 58.523 38.462 0.00 0.00 0.00 0.86
1595 3281 6.607004 ATTTAGGAACGGAGGGAGTATATG 57.393 41.667 0.00 0.00 0.00 1.78
1596 3282 3.897657 AGGAACGGAGGGAGTATATGA 57.102 47.619 0.00 0.00 0.00 2.15
1597 3283 3.768878 AGGAACGGAGGGAGTATATGAG 58.231 50.000 0.00 0.00 0.00 2.90
1598 3284 3.140519 AGGAACGGAGGGAGTATATGAGT 59.859 47.826 0.00 0.00 0.00 3.41
1599 3285 4.353191 AGGAACGGAGGGAGTATATGAGTA 59.647 45.833 0.00 0.00 0.00 2.59
1600 3286 5.015391 AGGAACGGAGGGAGTATATGAGTAT 59.985 44.000 0.00 0.00 0.00 2.12
1601 3287 6.217074 AGGAACGGAGGGAGTATATGAGTATA 59.783 42.308 0.00 0.00 0.00 1.47
1602 3288 6.888632 GGAACGGAGGGAGTATATGAGTATAA 59.111 42.308 0.00 0.00 0.00 0.98
1603 3289 7.560626 GGAACGGAGGGAGTATATGAGTATAAT 59.439 40.741 0.00 0.00 0.00 1.28
1604 3290 9.624373 GAACGGAGGGAGTATATGAGTATAATA 57.376 37.037 0.00 0.00 0.00 0.98
1626 3312 8.824159 AATATTGCTCTGTGTATAGCTAGTTG 57.176 34.615 0.00 0.00 39.53 3.16
1627 3313 5.661056 TTGCTCTGTGTATAGCTAGTTGT 57.339 39.130 0.00 0.00 39.53 3.32
1628 3314 4.998788 TGCTCTGTGTATAGCTAGTTGTG 58.001 43.478 0.00 0.00 39.53 3.33
1629 3315 4.462834 TGCTCTGTGTATAGCTAGTTGTGT 59.537 41.667 0.00 0.00 39.53 3.72
1630 3316 5.047306 TGCTCTGTGTATAGCTAGTTGTGTT 60.047 40.000 0.00 0.00 39.53 3.32
1631 3317 5.869888 GCTCTGTGTATAGCTAGTTGTGTTT 59.130 40.000 0.00 0.00 35.80 2.83
1632 3318 6.369065 GCTCTGTGTATAGCTAGTTGTGTTTT 59.631 38.462 0.00 0.00 35.80 2.43
1633 3319 7.544566 GCTCTGTGTATAGCTAGTTGTGTTTTA 59.455 37.037 0.00 0.00 35.80 1.52
1634 3320 9.419297 CTCTGTGTATAGCTAGTTGTGTTTTAA 57.581 33.333 0.00 0.00 0.00 1.52
1635 3321 9.767228 TCTGTGTATAGCTAGTTGTGTTTTAAA 57.233 29.630 0.00 0.00 0.00 1.52
1637 3323 8.500773 TGTGTATAGCTAGTTGTGTTTTAAAGC 58.499 33.333 0.00 0.00 0.00 3.51
1638 3324 7.686938 GTGTATAGCTAGTTGTGTTTTAAAGCG 59.313 37.037 0.00 0.00 33.80 4.68
1639 3325 3.885358 AGCTAGTTGTGTTTTAAAGCGC 58.115 40.909 0.00 0.00 33.80 5.92
1640 3326 2.977829 GCTAGTTGTGTTTTAAAGCGCC 59.022 45.455 2.29 0.00 0.00 6.53
1641 3327 2.113910 AGTTGTGTTTTAAAGCGCCG 57.886 45.000 2.29 0.00 0.00 6.46
1642 3328 1.402613 AGTTGTGTTTTAAAGCGCCGT 59.597 42.857 2.29 0.00 0.00 5.68
1643 3329 2.613133 AGTTGTGTTTTAAAGCGCCGTA 59.387 40.909 2.29 0.00 0.00 4.02
1644 3330 3.251487 AGTTGTGTTTTAAAGCGCCGTAT 59.749 39.130 2.29 0.00 0.00 3.06
1645 3331 4.451774 AGTTGTGTTTTAAAGCGCCGTATA 59.548 37.500 2.29 0.00 0.00 1.47
1646 3332 5.049543 AGTTGTGTTTTAAAGCGCCGTATAA 60.050 36.000 2.29 0.00 0.00 0.98
1647 3333 4.710680 TGTGTTTTAAAGCGCCGTATAAC 58.289 39.130 2.29 8.87 0.00 1.89
1648 3334 4.212847 TGTGTTTTAAAGCGCCGTATAACA 59.787 37.500 15.31 15.31 0.00 2.41
1649 3335 5.106634 TGTGTTTTAAAGCGCCGTATAACAT 60.107 36.000 19.47 0.00 0.00 2.71
1650 3336 5.796437 GTGTTTTAAAGCGCCGTATAACATT 59.204 36.000 19.47 0.00 0.00 2.71
1651 3337 6.306117 GTGTTTTAAAGCGCCGTATAACATTT 59.694 34.615 19.47 8.38 0.00 2.32
1652 3338 6.305877 TGTTTTAAAGCGCCGTATAACATTTG 59.694 34.615 15.31 0.00 0.00 2.32
1653 3339 5.548706 TTAAAGCGCCGTATAACATTTGT 57.451 34.783 2.29 0.00 0.00 2.83
1654 3340 3.398954 AAGCGCCGTATAACATTTGTG 57.601 42.857 2.29 0.00 0.00 3.33
1655 3341 2.352388 AGCGCCGTATAACATTTGTGT 58.648 42.857 2.29 0.00 0.00 3.72
1656 3342 2.095213 AGCGCCGTATAACATTTGTGTG 59.905 45.455 2.29 0.00 0.00 3.82
1657 3343 2.094575 GCGCCGTATAACATTTGTGTGA 59.905 45.455 0.00 0.00 0.00 3.58
1658 3344 3.666001 CGCCGTATAACATTTGTGTGAC 58.334 45.455 0.00 0.00 0.00 3.67
1659 3345 3.484557 CGCCGTATAACATTTGTGTGACC 60.485 47.826 0.00 0.00 0.00 4.02
1660 3346 3.687698 GCCGTATAACATTTGTGTGACCT 59.312 43.478 0.00 0.00 0.00 3.85
1661 3347 4.871557 GCCGTATAACATTTGTGTGACCTA 59.128 41.667 0.00 0.00 0.00 3.08
1662 3348 5.526111 GCCGTATAACATTTGTGTGACCTAT 59.474 40.000 0.00 0.00 0.00 2.57
1663 3349 6.292703 GCCGTATAACATTTGTGTGACCTATC 60.293 42.308 0.00 0.00 0.00 2.08
1664 3350 6.984474 CCGTATAACATTTGTGTGACCTATCT 59.016 38.462 0.00 0.00 0.00 1.98
1665 3351 7.042725 CCGTATAACATTTGTGTGACCTATCTG 60.043 40.741 0.00 0.00 0.00 2.90
1666 3352 7.491372 CGTATAACATTTGTGTGACCTATCTGT 59.509 37.037 0.00 0.00 0.00 3.41
1667 3353 9.811995 GTATAACATTTGTGTGACCTATCTGTA 57.188 33.333 0.00 0.00 0.00 2.74
1668 3354 8.718102 ATAACATTTGTGTGACCTATCTGTAC 57.282 34.615 0.00 0.00 0.00 2.90
1669 3355 6.360370 ACATTTGTGTGACCTATCTGTACT 57.640 37.500 0.00 0.00 0.00 2.73
1670 3356 7.476540 ACATTTGTGTGACCTATCTGTACTA 57.523 36.000 0.00 0.00 0.00 1.82
1671 3357 8.079211 ACATTTGTGTGACCTATCTGTACTAT 57.921 34.615 0.00 0.00 0.00 2.12
1672 3358 9.197306 ACATTTGTGTGACCTATCTGTACTATA 57.803 33.333 0.00 0.00 0.00 1.31
1673 3359 9.684448 CATTTGTGTGACCTATCTGTACTATAG 57.316 37.037 0.00 0.00 0.00 1.31
1674 3360 6.879276 TGTGTGACCTATCTGTACTATAGC 57.121 41.667 0.00 0.00 0.00 2.97
1707 3393 4.024725 TGAACCGAAAACCGTAGAACAATG 60.025 41.667 0.00 0.00 36.31 2.82
1924 3616 3.526931 TTGAGTAGCTTTCTCCATCCG 57.473 47.619 13.52 0.00 0.00 4.18
1948 3640 0.523966 CCGATGGGTTTTGCGCTTTA 59.476 50.000 9.73 0.00 0.00 1.85
1951 3643 3.249917 CGATGGGTTTTGCGCTTTAAAT 58.750 40.909 9.73 0.00 0.00 1.40
2122 3814 0.892814 GCAGAGCAAAAGGGCAGTCT 60.893 55.000 0.00 0.00 35.83 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.699703 GCTTGGTGAACAATAAAACCTAATAAA 57.300 29.630 0.00 0.00 38.65 1.40
39 40 9.084533 AGCTTGGTGAACAATAAAACCTAATAA 57.915 29.630 0.00 0.00 38.65 1.40
40 41 8.644374 AGCTTGGTGAACAATAAAACCTAATA 57.356 30.769 0.00 0.00 38.65 0.98
41 42 7.232534 TGAGCTTGGTGAACAATAAAACCTAAT 59.767 33.333 0.00 0.00 38.65 1.73
42 43 6.547880 TGAGCTTGGTGAACAATAAAACCTAA 59.452 34.615 0.00 0.00 38.65 2.69
43 44 6.065374 TGAGCTTGGTGAACAATAAAACCTA 58.935 36.000 0.00 0.00 38.65 3.08
44 45 4.892934 TGAGCTTGGTGAACAATAAAACCT 59.107 37.500 0.00 0.00 38.65 3.50
45 46 5.195001 TGAGCTTGGTGAACAATAAAACC 57.805 39.130 0.00 0.00 38.65 3.27
46 47 7.437862 TCAAATGAGCTTGGTGAACAATAAAAC 59.562 33.333 0.00 0.00 38.65 2.43
47 48 7.495901 TCAAATGAGCTTGGTGAACAATAAAA 58.504 30.769 0.00 0.00 38.65 1.52
48 49 7.048629 TCAAATGAGCTTGGTGAACAATAAA 57.951 32.000 0.00 0.00 38.65 1.40
49 50 6.647334 TCAAATGAGCTTGGTGAACAATAA 57.353 33.333 0.00 0.00 38.65 1.40
50 51 6.258230 CTCAAATGAGCTTGGTGAACAATA 57.742 37.500 0.00 0.00 34.16 1.90
51 52 5.130292 CTCAAATGAGCTTGGTGAACAAT 57.870 39.130 0.00 0.00 34.16 2.71
52 53 4.572985 CTCAAATGAGCTTGGTGAACAA 57.427 40.909 0.00 0.00 35.13 2.83
76 77 5.057149 TCAGAAGTGGAGTTTTTGAGCTAC 58.943 41.667 0.00 0.00 0.00 3.58
77 78 5.163301 ACTCAGAAGTGGAGTTTTTGAGCTA 60.163 40.000 5.69 0.00 42.77 3.32
96 97 5.250200 AGCTAGGAATATACGAGGACTCAG 58.750 45.833 0.00 0.00 0.00 3.35
97 98 5.244189 AGCTAGGAATATACGAGGACTCA 57.756 43.478 0.00 0.00 0.00 3.41
105 106 6.430308 TGAAGAGGTGTAGCTAGGAATATACG 59.570 42.308 0.00 0.00 0.00 3.06
138 139 1.378382 CATGCATGGGACCGGTTCA 60.378 57.895 19.40 14.44 0.00 3.18
140 141 2.755469 GCATGCATGGGACCGGTT 60.755 61.111 27.34 0.00 0.00 4.44
141 142 4.820744 GGCATGCATGGGACCGGT 62.821 66.667 27.34 6.92 0.00 5.28
194 195 1.906995 CAATGGTTTCATGGCCCCC 59.093 57.895 0.00 0.00 33.18 5.40
195 196 1.221566 GCAATGGTTTCATGGCCCC 59.778 57.895 0.00 0.00 42.98 5.80
224 225 2.809601 GTGCGGTAGTGCGGTGAG 60.810 66.667 0.00 0.00 37.81 3.51
226 227 3.982372 ATCGTGCGGTAGTGCGGTG 62.982 63.158 0.00 0.00 37.81 4.94
227 228 3.695022 GATCGTGCGGTAGTGCGGT 62.695 63.158 0.00 0.00 37.81 5.68
228 229 2.954868 GATCGTGCGGTAGTGCGG 60.955 66.667 0.00 0.00 37.81 5.69
229 230 2.202557 TGATCGTGCGGTAGTGCG 60.203 61.111 0.00 0.00 37.81 5.34
230 231 2.165301 GGTGATCGTGCGGTAGTGC 61.165 63.158 0.00 0.00 0.00 4.40
313 1851 5.009631 TGTGGAAAGGATTGATCGAACAAT 58.990 37.500 19.47 19.47 42.19 2.71
314 1852 4.393834 TGTGGAAAGGATTGATCGAACAA 58.606 39.130 10.73 10.73 0.00 2.83
317 1855 4.222810 TCTCTGTGGAAAGGATTGATCGAA 59.777 41.667 0.00 0.00 0.00 3.71
318 1856 3.769300 TCTCTGTGGAAAGGATTGATCGA 59.231 43.478 0.00 0.00 0.00 3.59
324 1862 3.913163 AGGACTTCTCTGTGGAAAGGATT 59.087 43.478 0.00 0.00 0.00 3.01
326 1864 2.900546 GAGGACTTCTCTGTGGAAAGGA 59.099 50.000 0.00 0.00 39.38 3.36
333 1871 3.057245 TGTTCATCGAGGACTTCTCTGTG 60.057 47.826 0.00 0.00 40.30 3.66
334 1872 3.157881 TGTTCATCGAGGACTTCTCTGT 58.842 45.455 0.00 0.00 40.30 3.41
337 1875 4.442375 TCTTGTTCATCGAGGACTTCTC 57.558 45.455 0.00 0.00 39.10 2.87
343 1881 3.521560 CGGATTTCTTGTTCATCGAGGA 58.478 45.455 0.00 0.00 0.00 3.71
348 1886 5.731686 GCTTCATCCGGATTTCTTGTTCATC 60.732 44.000 16.19 0.00 0.00 2.92
350 1888 3.440173 GCTTCATCCGGATTTCTTGTTCA 59.560 43.478 16.19 0.00 0.00 3.18
351 1889 3.440173 TGCTTCATCCGGATTTCTTGTTC 59.560 43.478 16.19 0.00 0.00 3.18
363 1901 0.816825 CCCATCCAGTGCTTCATCCG 60.817 60.000 0.00 0.00 0.00 4.18
376 1914 2.111878 CTCGCCCATGACCCATCC 59.888 66.667 0.00 0.00 0.00 3.51
378 1916 1.383109 TCTCTCGCCCATGACCCAT 60.383 57.895 0.00 0.00 0.00 4.00
379 1917 2.038813 TCTCTCGCCCATGACCCA 59.961 61.111 0.00 0.00 0.00 4.51
380 1918 2.501610 GTCTCTCGCCCATGACCC 59.498 66.667 0.00 0.00 0.00 4.46
381 1919 2.105128 CGTCTCTCGCCCATGACC 59.895 66.667 0.00 0.00 0.00 4.02
424 1962 3.493002 CGAGGGTTTACAAGTGTGGTGTA 60.493 47.826 0.00 0.00 0.00 2.90
487 2033 2.270352 TAATTAAGCCGGCCAGGATG 57.730 50.000 26.15 0.00 45.00 3.51
488 2034 2.956333 GTTTAATTAAGCCGGCCAGGAT 59.044 45.455 26.15 9.74 45.00 3.24
489 2035 2.371306 GTTTAATTAAGCCGGCCAGGA 58.629 47.619 26.15 7.42 45.00 3.86
552 2098 2.021584 CTGCGCGTCTACTGCACAA 61.022 57.895 8.43 0.00 34.42 3.33
561 2159 4.284860 TGTCTGTGCTGCGCGTCT 62.285 61.111 8.43 0.00 0.00 4.18
563 2161 4.284860 TCTGTCTGTGCTGCGCGT 62.285 61.111 8.43 0.00 0.00 6.01
579 2177 0.661483 GTTGCGAACTTGCCAAGCTC 60.661 55.000 3.88 0.45 0.00 4.09
580 2178 1.360192 GTTGCGAACTTGCCAAGCT 59.640 52.632 3.88 0.00 0.00 3.74
585 2183 2.251371 GTCCGTTGCGAACTTGCC 59.749 61.111 0.00 0.00 0.00 4.52
787 2396 1.378646 TTTGTGGCCCGTGTGTTCA 60.379 52.632 0.00 0.00 0.00 3.18
789 2398 0.968393 AACTTTGTGGCCCGTGTGTT 60.968 50.000 0.00 0.00 0.00 3.32
821 2430 3.535561 AGTTAATCACGAGGAATGCAGG 58.464 45.455 0.00 0.00 0.00 4.85
852 2461 0.249911 AGGAAATATCACGCCGGAGC 60.250 55.000 5.05 0.00 0.00 4.70
881 2490 0.896940 TTATAGGTAGCTCCGGCCGG 60.897 60.000 39.13 39.13 41.99 6.13
937 2555 0.392461 GGTGTGTGGTGTGACTGTGT 60.392 55.000 0.00 0.00 0.00 3.72
984 2633 3.933722 ATGGCCGCCCTCGAGATG 61.934 66.667 15.71 5.73 38.10 2.90
1050 2703 1.762460 CTGCTCCCTGTCCCCGTAT 60.762 63.158 0.00 0.00 0.00 3.06
1286 2955 1.142748 CTCGTCTGCTCCATGGTCC 59.857 63.158 12.58 4.51 0.00 4.46
1329 3002 3.312828 GTCCATCGTAGATGAGTCATGC 58.687 50.000 11.20 2.48 45.12 4.06
1339 3012 3.866703 ATCTCTCAGGTCCATCGTAGA 57.133 47.619 0.00 0.00 45.75 2.59
1375 3061 2.162608 AGCTAGCTATTCGACCTATGCG 59.837 50.000 17.69 0.00 0.00 4.73
1408 3094 6.318144 AGAATATATGCCATGTCATAGCAAGC 59.682 38.462 10.03 0.00 40.46 4.01
1409 3095 7.769507 AGAGAATATATGCCATGTCATAGCAAG 59.230 37.037 10.03 0.00 40.46 4.01
1410 3096 7.627311 AGAGAATATATGCCATGTCATAGCAA 58.373 34.615 10.03 1.09 40.46 3.91
1411 3097 7.191593 AGAGAATATATGCCATGTCATAGCA 57.808 36.000 8.41 8.41 41.50 3.49
1412 3098 6.705381 GGAGAGAATATATGCCATGTCATAGC 59.295 42.308 2.55 0.00 32.99 2.97
1413 3099 6.922407 CGGAGAGAATATATGCCATGTCATAG 59.078 42.308 2.55 0.00 32.99 2.23
1414 3100 6.381133 ACGGAGAGAATATATGCCATGTCATA 59.619 38.462 0.00 0.00 33.89 2.15
1415 3101 5.188555 ACGGAGAGAATATATGCCATGTCAT 59.811 40.000 0.00 0.00 0.00 3.06
1416 3102 4.528206 ACGGAGAGAATATATGCCATGTCA 59.472 41.667 0.00 0.00 0.00 3.58
1417 3103 5.078411 ACGGAGAGAATATATGCCATGTC 57.922 43.478 0.00 0.00 0.00 3.06
1418 3104 5.482908 GAACGGAGAGAATATATGCCATGT 58.517 41.667 0.00 0.00 0.00 3.21
1419 3105 4.872691 GGAACGGAGAGAATATATGCCATG 59.127 45.833 0.00 0.00 0.00 3.66
1420 3106 4.080863 GGGAACGGAGAGAATATATGCCAT 60.081 45.833 0.00 0.00 0.00 4.40
1421 3107 3.260884 GGGAACGGAGAGAATATATGCCA 59.739 47.826 0.00 0.00 0.00 4.92
1422 3108 3.260884 TGGGAACGGAGAGAATATATGCC 59.739 47.826 0.00 0.00 0.00 4.40
1423 3109 4.537135 TGGGAACGGAGAGAATATATGC 57.463 45.455 0.00 0.00 0.00 3.14
1424 3110 8.314751 AGTATTTGGGAACGGAGAGAATATATG 58.685 37.037 0.00 0.00 0.00 1.78
1425 3111 8.437274 AGTATTTGGGAACGGAGAGAATATAT 57.563 34.615 0.00 0.00 0.00 0.86
1426 3112 7.850935 AGTATTTGGGAACGGAGAGAATATA 57.149 36.000 0.00 0.00 0.00 0.86
1427 3113 6.749036 AGTATTTGGGAACGGAGAGAATAT 57.251 37.500 0.00 0.00 0.00 1.28
1428 3114 6.070424 ACAAGTATTTGGGAACGGAGAGAATA 60.070 38.462 2.81 0.00 38.66 1.75
1429 3115 5.186198 CAAGTATTTGGGAACGGAGAGAAT 58.814 41.667 0.00 0.00 0.00 2.40
1430 3116 4.041198 ACAAGTATTTGGGAACGGAGAGAA 59.959 41.667 2.81 0.00 38.66 2.87
1431 3117 3.581332 ACAAGTATTTGGGAACGGAGAGA 59.419 43.478 2.81 0.00 38.66 3.10
1432 3118 3.933332 GACAAGTATTTGGGAACGGAGAG 59.067 47.826 2.81 0.00 38.66 3.20
1433 3119 3.581332 AGACAAGTATTTGGGAACGGAGA 59.419 43.478 2.81 0.00 38.66 3.71
1434 3120 3.939066 AGACAAGTATTTGGGAACGGAG 58.061 45.455 2.81 0.00 38.66 4.63
1435 3121 4.360951 AAGACAAGTATTTGGGAACGGA 57.639 40.909 2.81 0.00 38.66 4.69
1436 3122 5.447624 AAAAGACAAGTATTTGGGAACGG 57.552 39.130 2.81 0.00 38.66 4.44
1437 3123 7.081976 CCTAAAAAGACAAGTATTTGGGAACG 58.918 38.462 2.81 0.00 35.98 3.95
1438 3124 6.866770 GCCTAAAAAGACAAGTATTTGGGAAC 59.133 38.462 2.81 0.00 35.98 3.62
1439 3125 6.551601 TGCCTAAAAAGACAAGTATTTGGGAA 59.448 34.615 2.81 0.00 35.98 3.97
1440 3126 6.071984 TGCCTAAAAAGACAAGTATTTGGGA 58.928 36.000 2.81 0.82 35.98 4.37
1441 3127 6.339587 TGCCTAAAAAGACAAGTATTTGGG 57.660 37.500 2.81 0.00 38.66 4.12
1442 3128 8.831715 AAATGCCTAAAAAGACAAGTATTTGG 57.168 30.769 2.81 0.00 38.66 3.28
1443 3129 9.474920 TGAAATGCCTAAAAAGACAAGTATTTG 57.525 29.630 0.00 0.00 40.24 2.32
1447 3133 9.474920 CATTTGAAATGCCTAAAAAGACAAGTA 57.525 29.630 4.82 0.00 0.00 2.24
1448 3134 8.203485 TCATTTGAAATGCCTAAAAAGACAAGT 58.797 29.630 12.86 0.00 0.00 3.16
1449 3135 8.592105 TCATTTGAAATGCCTAAAAAGACAAG 57.408 30.769 12.86 0.00 0.00 3.16
1450 3136 8.825745 GTTCATTTGAAATGCCTAAAAAGACAA 58.174 29.630 12.86 0.00 35.58 3.18
1451 3137 8.203485 AGTTCATTTGAAATGCCTAAAAAGACA 58.797 29.630 12.86 0.00 35.58 3.41
1452 3138 8.593492 AGTTCATTTGAAATGCCTAAAAAGAC 57.407 30.769 12.86 1.62 35.58 3.01
1453 3139 8.420222 TGAGTTCATTTGAAATGCCTAAAAAGA 58.580 29.630 12.86 0.00 35.58 2.52
1454 3140 8.592105 TGAGTTCATTTGAAATGCCTAAAAAG 57.408 30.769 12.86 0.00 35.58 2.27
1455 3141 8.825745 GTTGAGTTCATTTGAAATGCCTAAAAA 58.174 29.630 12.86 0.00 35.58 1.94
1456 3142 7.984050 TGTTGAGTTCATTTGAAATGCCTAAAA 59.016 29.630 12.86 6.88 35.58 1.52
1457 3143 7.495901 TGTTGAGTTCATTTGAAATGCCTAAA 58.504 30.769 12.86 7.79 35.58 1.85
1458 3144 7.048629 TGTTGAGTTCATTTGAAATGCCTAA 57.951 32.000 12.86 2.31 35.58 2.69
1459 3145 6.647334 TGTTGAGTTCATTTGAAATGCCTA 57.353 33.333 12.86 0.00 35.58 3.93
1460 3146 5.534207 TGTTGAGTTCATTTGAAATGCCT 57.466 34.783 12.86 10.60 35.58 4.75
1461 3147 6.033831 CGTATGTTGAGTTCATTTGAAATGCC 59.966 38.462 12.86 6.22 35.58 4.40
1462 3148 6.033831 CCGTATGTTGAGTTCATTTGAAATGC 59.966 38.462 12.86 0.56 35.58 3.56
1463 3149 7.304735 TCCGTATGTTGAGTTCATTTGAAATG 58.695 34.615 11.54 11.54 35.58 2.32
1464 3150 7.447374 TCCGTATGTTGAGTTCATTTGAAAT 57.553 32.000 0.00 0.00 35.58 2.17
1465 3151 6.869315 TCCGTATGTTGAGTTCATTTGAAA 57.131 33.333 0.00 0.00 35.58 2.69
1466 3152 6.429692 ACATCCGTATGTTGAGTTCATTTGAA 59.570 34.615 0.00 0.00 44.07 2.69
1467 3153 5.937540 ACATCCGTATGTTGAGTTCATTTGA 59.062 36.000 0.00 0.00 44.07 2.69
1468 3154 6.182039 ACATCCGTATGTTGAGTTCATTTG 57.818 37.500 0.00 0.00 44.07 2.32
1469 3155 7.919690 CATACATCCGTATGTTGAGTTCATTT 58.080 34.615 0.00 0.00 46.70 2.32
1470 3156 7.482654 CATACATCCGTATGTTGAGTTCATT 57.517 36.000 0.00 0.00 46.70 2.57
1510 3196 5.500290 CGGCGTAAAATGAGTGAATCTACAC 60.500 44.000 0.00 0.00 40.60 2.90
1511 3197 4.565166 CGGCGTAAAATGAGTGAATCTACA 59.435 41.667 0.00 0.00 0.00 2.74
1512 3198 4.565564 ACGGCGTAAAATGAGTGAATCTAC 59.434 41.667 12.58 0.00 0.00 2.59
1513 3199 4.751060 ACGGCGTAAAATGAGTGAATCTA 58.249 39.130 12.58 0.00 0.00 1.98
1514 3200 3.596214 ACGGCGTAAAATGAGTGAATCT 58.404 40.909 12.58 0.00 0.00 2.40
1515 3201 5.006358 ACATACGGCGTAAAATGAGTGAATC 59.994 40.000 24.81 0.00 0.00 2.52
1516 3202 4.873827 ACATACGGCGTAAAATGAGTGAAT 59.126 37.500 24.81 0.20 0.00 2.57
1517 3203 4.247258 ACATACGGCGTAAAATGAGTGAA 58.753 39.130 24.81 0.00 0.00 3.18
1518 3204 3.852286 ACATACGGCGTAAAATGAGTGA 58.148 40.909 24.81 0.00 0.00 3.41
1519 3205 4.802039 ACTACATACGGCGTAAAATGAGTG 59.198 41.667 24.81 17.30 0.00 3.51
1520 3206 5.002464 ACTACATACGGCGTAAAATGAGT 57.998 39.130 24.81 18.30 0.00 3.41
1521 3207 5.038683 TGACTACATACGGCGTAAAATGAG 58.961 41.667 24.81 17.76 0.00 2.90
1522 3208 4.799949 GTGACTACATACGGCGTAAAATGA 59.200 41.667 24.81 1.27 0.00 2.57
1523 3209 4.802039 AGTGACTACATACGGCGTAAAATG 59.198 41.667 24.81 20.49 0.00 2.32
1524 3210 5.002464 AGTGACTACATACGGCGTAAAAT 57.998 39.130 24.81 14.27 0.00 1.82
1525 3211 4.439305 AGTGACTACATACGGCGTAAAA 57.561 40.909 24.81 11.12 0.00 1.52
1526 3212 4.168014 CAAGTGACTACATACGGCGTAAA 58.832 43.478 24.81 11.48 0.00 2.01
1527 3213 3.191162 ACAAGTGACTACATACGGCGTAA 59.809 43.478 24.81 6.81 0.00 3.18
1528 3214 2.749076 ACAAGTGACTACATACGGCGTA 59.251 45.455 23.25 23.25 0.00 4.42
1529 3215 1.542915 ACAAGTGACTACATACGGCGT 59.457 47.619 19.64 19.64 0.00 5.68
1530 3216 2.273370 ACAAGTGACTACATACGGCG 57.727 50.000 4.80 4.80 0.00 6.46
1531 3217 3.581755 TCAACAAGTGACTACATACGGC 58.418 45.455 0.00 0.00 0.00 5.68
1532 3218 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
1533 3219 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
1534 3220 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
1536 3222 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
1537 3223 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
1538 3224 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
1539 3225 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
1540 3226 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
1541 3227 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
1542 3228 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
1543 3229 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
1544 3230 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
1545 3231 9.050601 ACTTGTCTTTCTAGAGATTTCAACAAG 57.949 33.333 18.42 18.42 32.73 3.16
1546 3232 8.964476 ACTTGTCTTTCTAGAGATTTCAACAA 57.036 30.769 0.00 0.00 0.00 2.83
1556 3242 9.291664 CGTTCCTAAATACTTGTCTTTCTAGAG 57.708 37.037 0.00 0.00 0.00 2.43
1557 3243 8.248945 CCGTTCCTAAATACTTGTCTTTCTAGA 58.751 37.037 0.00 0.00 0.00 2.43
1558 3244 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
1559 3245 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
1560 3246 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
1561 3247 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
1562 3248 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
1563 3249 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
1564 3250 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
1565 3251 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
1566 3252 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
1567 3253 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
1568 3254 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
1569 3255 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
1570 3256 7.395489 TCATATACTCCCTCCGTTCCTAAATAC 59.605 40.741 0.00 0.00 0.00 1.89
1571 3257 7.472741 TCATATACTCCCTCCGTTCCTAAATA 58.527 38.462 0.00 0.00 0.00 1.40
1572 3258 6.320518 TCATATACTCCCTCCGTTCCTAAAT 58.679 40.000 0.00 0.00 0.00 1.40
1573 3259 5.708544 TCATATACTCCCTCCGTTCCTAAA 58.291 41.667 0.00 0.00 0.00 1.85
1574 3260 5.163012 ACTCATATACTCCCTCCGTTCCTAA 60.163 44.000 0.00 0.00 0.00 2.69
1575 3261 4.353191 ACTCATATACTCCCTCCGTTCCTA 59.647 45.833 0.00 0.00 0.00 2.94
1576 3262 3.140519 ACTCATATACTCCCTCCGTTCCT 59.859 47.826 0.00 0.00 0.00 3.36
1577 3263 3.498334 ACTCATATACTCCCTCCGTTCC 58.502 50.000 0.00 0.00 0.00 3.62
1578 3264 7.934855 TTATACTCATATACTCCCTCCGTTC 57.065 40.000 0.00 0.00 0.00 3.95
1600 3286 9.914131 CAACTAGCTATACACAGAGCAATATTA 57.086 33.333 0.00 0.00 41.64 0.98
1601 3287 8.424918 ACAACTAGCTATACACAGAGCAATATT 58.575 33.333 0.00 0.00 41.64 1.28
1602 3288 7.869937 CACAACTAGCTATACACAGAGCAATAT 59.130 37.037 0.00 0.00 41.64 1.28
1603 3289 7.147897 ACACAACTAGCTATACACAGAGCAATA 60.148 37.037 0.00 0.00 41.64 1.90
1604 3290 6.045318 CACAACTAGCTATACACAGAGCAAT 58.955 40.000 0.00 0.00 41.64 3.56
1605 3291 5.047306 ACACAACTAGCTATACACAGAGCAA 60.047 40.000 0.00 0.00 41.64 3.91
1606 3292 4.462834 ACACAACTAGCTATACACAGAGCA 59.537 41.667 0.00 0.00 41.64 4.26
1607 3293 5.000012 ACACAACTAGCTATACACAGAGC 58.000 43.478 0.00 0.00 39.39 4.09
1608 3294 7.891183 AAAACACAACTAGCTATACACAGAG 57.109 36.000 0.00 0.00 0.00 3.35
1609 3295 9.767228 TTTAAAACACAACTAGCTATACACAGA 57.233 29.630 0.00 0.00 0.00 3.41
1611 3297 8.500773 GCTTTAAAACACAACTAGCTATACACA 58.499 33.333 0.00 0.00 0.00 3.72
1612 3298 7.686938 CGCTTTAAAACACAACTAGCTATACAC 59.313 37.037 0.00 0.00 0.00 2.90
1613 3299 7.622672 GCGCTTTAAAACACAACTAGCTATACA 60.623 37.037 0.00 0.00 0.00 2.29
1614 3300 6.681599 GCGCTTTAAAACACAACTAGCTATAC 59.318 38.462 0.00 0.00 0.00 1.47
1615 3301 6.183360 GGCGCTTTAAAACACAACTAGCTATA 60.183 38.462 7.64 0.00 0.00 1.31
1616 3302 5.391629 GGCGCTTTAAAACACAACTAGCTAT 60.392 40.000 7.64 0.00 0.00 2.97
1617 3303 4.083696 GGCGCTTTAAAACACAACTAGCTA 60.084 41.667 7.64 0.00 0.00 3.32
1618 3304 3.304458 GGCGCTTTAAAACACAACTAGCT 60.304 43.478 7.64 0.00 0.00 3.32
1619 3305 2.977829 GGCGCTTTAAAACACAACTAGC 59.022 45.455 7.64 0.00 0.00 3.42
1620 3306 3.223157 CGGCGCTTTAAAACACAACTAG 58.777 45.455 7.64 0.00 0.00 2.57
1621 3307 2.613133 ACGGCGCTTTAAAACACAACTA 59.387 40.909 6.90 0.00 0.00 2.24
1622 3308 1.402613 ACGGCGCTTTAAAACACAACT 59.597 42.857 6.90 0.00 0.00 3.16
1623 3309 1.830086 ACGGCGCTTTAAAACACAAC 58.170 45.000 6.90 0.00 0.00 3.32
1624 3310 3.900388 ATACGGCGCTTTAAAACACAA 57.100 38.095 6.90 0.00 0.00 3.33
1625 3311 4.212847 TGTTATACGGCGCTTTAAAACACA 59.787 37.500 6.90 0.00 0.00 3.72
1626 3312 4.710680 TGTTATACGGCGCTTTAAAACAC 58.289 39.130 6.90 0.00 0.00 3.32
1627 3313 5.548706 ATGTTATACGGCGCTTTAAAACA 57.451 34.783 6.90 13.38 0.00 2.83
1628 3314 6.306117 ACAAATGTTATACGGCGCTTTAAAAC 59.694 34.615 6.90 7.88 0.00 2.43
1629 3315 6.305877 CACAAATGTTATACGGCGCTTTAAAA 59.694 34.615 6.90 0.00 0.00 1.52
1630 3316 5.795939 CACAAATGTTATACGGCGCTTTAAA 59.204 36.000 6.90 0.00 0.00 1.52
1631 3317 5.106634 ACACAAATGTTATACGGCGCTTTAA 60.107 36.000 6.90 0.00 34.46 1.52
1632 3318 4.392445 ACACAAATGTTATACGGCGCTTTA 59.608 37.500 6.90 0.00 34.46 1.85
1633 3319 3.189702 ACACAAATGTTATACGGCGCTTT 59.810 39.130 6.90 0.00 34.46 3.51
1634 3320 2.745281 ACACAAATGTTATACGGCGCTT 59.255 40.909 6.90 0.00 34.46 4.68
1635 3321 2.095213 CACACAAATGTTATACGGCGCT 59.905 45.455 6.90 0.00 36.72 5.92
1636 3322 2.094575 TCACACAAATGTTATACGGCGC 59.905 45.455 6.90 0.00 36.72 6.53
1637 3323 3.484557 GGTCACACAAATGTTATACGGCG 60.485 47.826 4.80 4.80 36.72 6.46
1638 3324 3.687698 AGGTCACACAAATGTTATACGGC 59.312 43.478 0.00 0.00 36.72 5.68
1639 3325 6.984474 AGATAGGTCACACAAATGTTATACGG 59.016 38.462 0.00 0.00 36.72 4.02
1640 3326 7.491372 ACAGATAGGTCACACAAATGTTATACG 59.509 37.037 0.00 0.00 36.72 3.06
1641 3327 8.718102 ACAGATAGGTCACACAAATGTTATAC 57.282 34.615 0.00 0.00 36.72 1.47
1642 3328 9.811995 GTACAGATAGGTCACACAAATGTTATA 57.188 33.333 0.00 0.00 36.72 0.98
1643 3329 8.540388 AGTACAGATAGGTCACACAAATGTTAT 58.460 33.333 0.00 0.00 36.72 1.89
1644 3330 7.903145 AGTACAGATAGGTCACACAAATGTTA 58.097 34.615 0.00 0.00 36.72 2.41
1645 3331 6.769512 AGTACAGATAGGTCACACAAATGTT 58.230 36.000 0.00 0.00 36.72 2.71
1646 3332 6.360370 AGTACAGATAGGTCACACAAATGT 57.640 37.500 0.00 0.00 40.80 2.71
1647 3333 9.684448 CTATAGTACAGATAGGTCACACAAATG 57.316 37.037 0.00 0.00 0.00 2.32
1648 3334 8.361139 GCTATAGTACAGATAGGTCACACAAAT 58.639 37.037 13.69 0.00 0.00 2.32
1649 3335 7.340999 TGCTATAGTACAGATAGGTCACACAAA 59.659 37.037 13.69 0.00 0.00 2.83
1650 3336 6.831868 TGCTATAGTACAGATAGGTCACACAA 59.168 38.462 13.69 0.00 0.00 3.33
1651 3337 6.362248 TGCTATAGTACAGATAGGTCACACA 58.638 40.000 13.69 3.28 0.00 3.72
1652 3338 6.879276 TGCTATAGTACAGATAGGTCACAC 57.121 41.667 13.69 1.36 0.00 3.82
1653 3339 8.478775 AAATGCTATAGTACAGATAGGTCACA 57.521 34.615 13.69 6.29 0.00 3.58
1654 3340 9.765795 AAAAATGCTATAGTACAGATAGGTCAC 57.234 33.333 13.69 2.13 0.00 3.67
1707 3393 5.054390 TGAATGAAAATTGCCGTAGAACC 57.946 39.130 0.00 0.00 0.00 3.62
2122 3814 1.343782 ACCAGCCTCCATCTCATCTGA 60.344 52.381 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.