Multiple sequence alignment - TraesCS3A01G147700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G147700 chr3A 100.000 5851 0 0 1 5851 130841940 130836090 0.000000e+00 10805
1 TraesCS3A01G147700 chr3D 91.307 5211 281 69 386 5520 123301774 123296660 0.000000e+00 6955
2 TraesCS3A01G147700 chr3D 95.562 338 13 1 62 399 123303756 123303421 1.850000e-149 540
3 TraesCS3A01G147700 chr3D 94.225 329 16 1 5521 5849 123296611 123296286 3.150000e-137 499
4 TraesCS3A01G147700 chr3D 92.632 95 7 0 1902 1996 420822283 420822377 2.840000e-28 137
5 TraesCS3A01G147700 chr3D 90.816 98 8 1 1890 1987 54370510 54370414 4.760000e-26 130
6 TraesCS3A01G147700 chr3D 95.522 67 3 0 1 67 123303980 123303914 2.230000e-19 108
7 TraesCS3A01G147700 chr3B 92.633 2769 149 19 3111 5849 175760399 175757656 0.000000e+00 3932
8 TraesCS3A01G147700 chr3B 87.609 1953 118 49 1 1905 175763284 175761408 0.000000e+00 2152
9 TraesCS3A01G147700 chr3B 95.817 765 27 3 1990 2753 175761406 175760646 0.000000e+00 1230
10 TraesCS3A01G147700 chr3B 95.349 258 11 1 2784 3041 175760652 175760396 5.460000e-110 409
11 TraesCS3A01G147700 chr4A 96.471 85 3 0 1903 1987 684920484 684920400 2.200000e-29 141
12 TraesCS3A01G147700 chr2D 94.444 90 4 1 1903 1991 15682985 15682896 2.840000e-28 137
13 TraesCS3A01G147700 chr2D 94.444 90 4 1 1902 1991 436111425 436111337 2.840000e-28 137
14 TraesCS3A01G147700 chr1B 92.632 95 6 1 1893 1987 456268179 456268086 1.020000e-27 135
15 TraesCS3A01G147700 chr1D 92.308 91 7 0 1897 1987 355171568 355171658 4.760000e-26 130
16 TraesCS3A01G147700 chr1D 84.496 129 14 5 1860 1987 289475292 289475415 7.960000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G147700 chr3A 130836090 130841940 5850 True 10805.00 10805 100.000 1 5851 1 chr3A.!!$R1 5850
1 TraesCS3A01G147700 chr3D 123296286 123303980 7694 True 2025.50 6955 94.154 1 5849 4 chr3D.!!$R2 5848
2 TraesCS3A01G147700 chr3B 175757656 175763284 5628 True 1930.75 3932 92.852 1 5849 4 chr3B.!!$R1 5848

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
490 2332 0.030101 TCAAGCAAACCTTTTCGCCG 59.970 50.000 0.00 0.0 0.00 6.46 F
1529 3411 0.185901 ACTGCCTCTGCCCTTTCAAA 59.814 50.000 0.00 0.0 36.33 2.69 F
1914 3800 0.824759 GTGCATTCTACTCCCTCCGT 59.175 55.000 0.00 0.0 0.00 4.69 F
3357 5257 1.948144 GCTTGGCCCTCTTTCTGTCTC 60.948 57.143 0.00 0.0 0.00 3.36 F
4245 6153 0.875474 GCAAGCGGCATTGTTGTTGT 60.875 50.000 1.45 0.0 43.97 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1570 3452 2.149555 TGTACGCGACATGCACTTG 58.850 52.632 15.93 0.0 46.97 3.16 R
3292 5192 0.099436 GCAACTGCAAAGGCTATCGG 59.901 55.000 0.00 0.0 41.91 4.18 R
3654 5557 1.028330 CACCATGACCAGCAAGCGAT 61.028 55.000 0.00 0.0 0.00 4.58 R
4306 6214 0.532573 CTCAGTTGGCTAGAGGCGAA 59.467 55.000 0.00 0.0 44.42 4.70 R
5760 7744 0.108138 ACTCTATGCACCGTCTTGGC 60.108 55.000 0.00 0.0 43.94 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 235 6.765989 GGGCTTTAACATACATACATCTGACA 59.234 38.462 0.00 0.00 0.00 3.58
98 262 3.561310 TCAGAATTATGCTGCCGATCAAC 59.439 43.478 0.00 0.00 33.45 3.18
184 348 3.785486 TGAGCTTATCATCACCAACTCG 58.215 45.455 0.00 0.00 31.12 4.18
187 351 1.860950 CTTATCATCACCAACTCGCCG 59.139 52.381 0.00 0.00 0.00 6.46
320 484 6.755141 GCGTACTATCAAATCCAGAACACTAA 59.245 38.462 0.00 0.00 0.00 2.24
321 485 7.277098 GCGTACTATCAAATCCAGAACACTAAA 59.723 37.037 0.00 0.00 0.00 1.85
351 515 3.174573 GCATCGGCGTGCAAAAGC 61.175 61.111 22.96 3.63 44.43 3.51
362 526 1.340889 GTGCAAAAGCAACCTCCATCA 59.659 47.619 0.00 0.00 0.00 3.07
371 535 4.756564 AGCAACCTCCATCATCCTATCTA 58.243 43.478 0.00 0.00 0.00 1.98
484 2308 4.646492 AGTCATTCAGTCAAGCAAACCTTT 59.354 37.500 0.00 0.00 0.00 3.11
485 2309 5.127682 AGTCATTCAGTCAAGCAAACCTTTT 59.872 36.000 0.00 0.00 0.00 2.27
490 2332 0.030101 TCAAGCAAACCTTTTCGCCG 59.970 50.000 0.00 0.00 0.00 6.46
494 2336 1.731093 CAAACCTTTTCGCCGTGGT 59.269 52.632 0.00 0.00 0.00 4.16
542 2384 6.518208 ACAAACCAAACTAAGCAAACTACA 57.482 33.333 0.00 0.00 0.00 2.74
584 2426 0.251209 TAGAGTCGAGCACCTGGTGT 60.251 55.000 26.48 14.20 35.75 4.16
599 2441 3.364441 TGTGCACTGCATTCCGGC 61.364 61.111 19.41 0.00 41.91 6.13
641 2483 1.592223 GAGTTCCCTCGGTCACAGG 59.408 63.158 0.00 0.00 0.00 4.00
646 2488 2.681778 CCTCGGTCACAGGGAGCT 60.682 66.667 0.00 0.00 41.89 4.09
647 2489 1.379977 CCTCGGTCACAGGGAGCTA 60.380 63.158 0.00 0.00 41.89 3.32
648 2490 1.388065 CCTCGGTCACAGGGAGCTAG 61.388 65.000 0.00 0.00 41.89 3.42
650 2492 2.496817 GGTCACAGGGAGCTAGCG 59.503 66.667 9.55 0.00 40.87 4.26
651 2493 2.202810 GTCACAGGGAGCTAGCGC 60.203 66.667 10.35 10.35 0.00 5.92
654 2496 3.522731 ACAGGGAGCTAGCGCGAG 61.523 66.667 12.10 13.72 42.32 5.03
670 2520 1.370657 GAGCACGGGATCGATCGAC 60.371 63.158 22.06 14.00 40.11 4.20
672 2522 2.051256 CACGGGATCGATCGACGG 60.051 66.667 31.04 21.29 42.82 4.79
673 2523 2.203112 ACGGGATCGATCGACGGA 60.203 61.111 31.04 0.00 42.82 4.69
678 2528 1.605710 GGGATCGATCGACGGACTAAA 59.394 52.381 22.06 0.00 42.82 1.85
682 2532 1.469703 TCGATCGACGGACTAAAGCAA 59.530 47.619 15.15 0.00 42.82 3.91
684 2534 1.582502 GATCGACGGACTAAAGCAACG 59.417 52.381 0.00 0.00 0.00 4.10
686 2536 1.200716 TCGACGGACTAAAGCAACGAT 59.799 47.619 0.00 0.00 0.00 3.73
689 2539 3.114065 GACGGACTAAAGCAACGATAGG 58.886 50.000 0.00 0.00 43.77 2.57
697 2547 0.456221 AGCAACGATAGGACCGTCTG 59.544 55.000 0.00 0.00 39.57 3.51
755 2605 1.148310 CTCGTGGCAAAACTGACGAT 58.852 50.000 0.00 0.00 39.88 3.73
758 2608 0.452784 GTGGCAAAACTGACGATCGC 60.453 55.000 16.60 8.83 0.00 4.58
760 2610 1.225745 GCAAAACTGACGATCGCCG 60.226 57.895 16.60 6.18 45.44 6.46
766 2616 1.934956 CTGACGATCGCCGAAGACG 60.935 63.158 16.60 9.36 41.76 4.18
767 2617 3.313257 GACGATCGCCGAAGACGC 61.313 66.667 16.60 2.55 41.76 5.19
775 2625 3.184683 CCGAAGACGCTGCTGCTC 61.185 66.667 14.03 9.91 38.29 4.26
776 2626 3.184683 CGAAGACGCTGCTGCTCC 61.185 66.667 14.03 5.11 36.97 4.70
824 2681 0.383949 GCCAAGCGAACCTTTGAACA 59.616 50.000 0.00 0.00 0.00 3.18
853 2710 1.833934 CAAAACAGTGGGCCAGGCT 60.834 57.895 6.40 0.00 0.00 4.58
854 2711 1.833934 AAAACAGTGGGCCAGGCTG 60.834 57.895 19.52 19.52 36.41 4.85
857 2714 4.753662 CAGTGGGCCAGGCTGCAT 62.754 66.667 6.40 0.00 0.00 3.96
858 2715 4.753662 AGTGGGCCAGGCTGCATG 62.754 66.667 6.40 7.42 0.00 4.06
909 2784 2.644555 CTATCCACTCCCAACGGCCG 62.645 65.000 26.86 26.86 0.00 6.13
1116 2994 4.821589 CGTCTCGCCAGCCTTCCC 62.822 72.222 0.00 0.00 0.00 3.97
1137 3015 2.431942 CGACCGGTACAGTGCACC 60.432 66.667 14.63 1.99 0.00 5.01
1138 3016 2.927580 CGACCGGTACAGTGCACCT 61.928 63.158 14.63 0.88 33.62 4.00
1140 3018 1.812686 GACCGGTACAGTGCACCTGA 61.813 60.000 14.63 0.00 44.49 3.86
1141 3019 1.369692 CCGGTACAGTGCACCTGAA 59.630 57.895 14.63 0.00 44.49 3.02
1142 3020 0.949105 CCGGTACAGTGCACCTGAAC 60.949 60.000 14.63 6.94 44.49 3.18
1143 3021 0.949105 CGGTACAGTGCACCTGAACC 60.949 60.000 14.63 14.82 44.49 3.62
1144 3022 0.396811 GGTACAGTGCACCTGAACCT 59.603 55.000 14.63 0.00 44.49 3.50
1145 3023 1.608283 GGTACAGTGCACCTGAACCTC 60.608 57.143 14.63 0.00 44.49 3.85
1152 3030 1.204146 GCACCTGAACCTCATCCCTA 58.796 55.000 0.00 0.00 0.00 3.53
1154 3032 2.026262 GCACCTGAACCTCATCCCTAAA 60.026 50.000 0.00 0.00 0.00 1.85
1162 3040 2.116238 CCTCATCCCTAAACGGAGGAA 58.884 52.381 0.00 0.00 46.38 3.36
1183 3061 1.107945 GAGATAGATAGCTCCCCGCC 58.892 60.000 0.00 0.00 40.39 6.13
1202 3080 1.662044 GTACCGGAACACCTGACGT 59.338 57.895 9.46 0.00 0.00 4.34
1242 3124 4.950479 CTGAGGTGCCCAGCTAAG 57.050 61.111 0.00 0.00 39.57 2.18
1289 3171 1.242076 CTTGGAGCTCCTGTGGTTTG 58.758 55.000 32.28 10.20 36.82 2.93
1307 3189 1.244697 TGTGACGAGAGAGAGGCACC 61.245 60.000 0.00 0.00 0.00 5.01
1529 3411 0.185901 ACTGCCTCTGCCCTTTCAAA 59.814 50.000 0.00 0.00 36.33 2.69
1570 3452 6.009115 TCCTTTTATTTCTTTCCGTCAAGC 57.991 37.500 0.00 0.00 0.00 4.01
1608 3490 6.470235 CGTACATTTCTGATGCTCCAAAATTC 59.530 38.462 0.00 0.00 0.00 2.17
1690 3572 2.547855 GCGGTGAGTATATCCATGCACA 60.548 50.000 0.00 0.00 0.00 4.57
1691 3573 3.059884 CGGTGAGTATATCCATGCACAC 58.940 50.000 0.00 0.00 37.53 3.82
1698 3580 6.127196 TGAGTATATCCATGCACACACAGTTA 60.127 38.462 0.00 0.00 0.00 2.24
1801 3686 2.241880 ACGTTGAAACCGGCAGACG 61.242 57.895 0.00 8.16 43.80 4.18
1844 3729 3.255642 ACATCCAGTTCAAAATCCGGTTG 59.744 43.478 0.00 0.00 0.00 3.77
1914 3800 0.824759 GTGCATTCTACTCCCTCCGT 59.175 55.000 0.00 0.00 0.00 4.69
1932 3818 3.119245 TCCGTCCCATAATATAAGAGCGC 60.119 47.826 0.00 0.00 0.00 5.92
1937 3823 6.603095 GTCCCATAATATAAGAGCGCTTTTG 58.397 40.000 22.35 5.08 35.56 2.44
1944 3830 7.843490 AATATAAGAGCGCTTTTGACACTAA 57.157 32.000 22.35 1.46 35.56 2.24
1945 3831 8.438676 AATATAAGAGCGCTTTTGACACTAAT 57.561 30.769 22.35 8.94 35.56 1.73
1946 3832 4.410492 AAGAGCGCTTTTGACACTAATG 57.590 40.909 13.26 0.00 0.00 1.90
1983 3870 4.710375 GCTCTTATATTATGGGACGGAGGA 59.290 45.833 0.00 0.00 0.00 3.71
1987 3874 4.891992 ATATTATGGGACGGAGGAAGTG 57.108 45.455 0.00 0.00 0.00 3.16
2245 4133 9.685828 CTTCTCCTATACTGTTACTTGCTTATC 57.314 37.037 0.00 0.00 0.00 1.75
2255 4143 5.812642 TGTTACTTGCTTATCTGCTTCTAGC 59.187 40.000 0.00 0.00 42.82 3.42
2323 4211 8.573035 TCAGTAAATTATGAAGTTCCGCTTTTT 58.427 29.630 0.00 0.00 37.59 1.94
2357 4245 9.959721 ACATATCAGACTTATAAACAAGGTTGT 57.040 29.630 0.00 0.00 44.72 3.32
2371 4259 6.195600 ACAAGGTTGTTCTTCTTGGGTATA 57.804 37.500 0.00 0.00 41.35 1.47
2481 4369 7.696992 TGTTGTTGAAGTTTTAAAGAGGACT 57.303 32.000 0.00 0.00 0.00 3.85
2549 4437 4.636249 AGTGAAGAACCTTCTAACTGCTG 58.364 43.478 8.02 0.00 36.28 4.41
2552 4440 5.297029 GTGAAGAACCTTCTAACTGCTGTTT 59.703 40.000 14.54 0.00 36.28 2.83
2779 4679 7.012894 GTGTGCAGGGTTATTACTATTGCATTA 59.987 37.037 10.08 0.00 37.26 1.90
2920 4820 5.063880 GCAAGAGGAGGTAGAACTTCAAAA 58.936 41.667 0.00 0.00 0.00 2.44
3074 4974 9.294030 CTTCCAACTTTATATTTGATGTCTTGC 57.706 33.333 0.00 0.00 0.00 4.01
3139 5039 2.604046 TCTTCTTGGCCTTCTATCGC 57.396 50.000 3.32 0.00 0.00 4.58
3234 5134 3.230134 AGAAGTATGCAAAAAGGCCACA 58.770 40.909 5.01 0.00 0.00 4.17
3357 5257 1.948144 GCTTGGCCCTCTTTCTGTCTC 60.948 57.143 0.00 0.00 0.00 3.36
3437 5337 3.915437 TCGAAGTTTTCTGGAAATGGC 57.085 42.857 0.00 0.00 0.00 4.40
3590 5493 4.942761 ATTTTCACAGCCAACATTGACT 57.057 36.364 0.00 0.00 0.00 3.41
3654 5557 2.184020 CTCCGGGTGTCATTGCAGGA 62.184 60.000 0.00 0.00 0.00 3.86
3698 5601 5.911752 TGCAACATTGGTAAGAAACAACAT 58.088 33.333 0.00 0.00 0.00 2.71
3759 5662 9.569167 TTCTCGTGATAAGTTATTTGTAGTCAG 57.431 33.333 0.00 0.00 0.00 3.51
3761 5664 7.317390 TCGTGATAAGTTATTTGTAGTCAGCA 58.683 34.615 0.00 0.00 0.00 4.41
3824 5728 6.379988 GGAATCTTTAGGGCTTTGGTCATTTA 59.620 38.462 0.00 0.00 0.00 1.40
4028 5932 6.313905 ACATAAACACTATGAGCAGCAACTAC 59.686 38.462 0.00 0.00 0.00 2.73
4034 5938 3.526931 ATGAGCAGCAACTACGTACAT 57.473 42.857 0.00 0.00 0.00 2.29
4047 5951 6.704289 ACTACGTACATGCCAGTTATTCTA 57.296 37.500 0.00 0.00 0.00 2.10
4051 5955 5.236478 ACGTACATGCCAGTTATTCTATTGC 59.764 40.000 0.00 0.00 0.00 3.56
4060 5964 6.199719 GCCAGTTATTCTATTGCTCATTTTGC 59.800 38.462 0.00 0.00 0.00 3.68
4067 5971 1.999648 TTGCTCATTTTGCCTCTGGT 58.000 45.000 0.00 0.00 0.00 4.00
4073 5977 4.142513 GCTCATTTTGCCTCTGGTTCTTAG 60.143 45.833 0.00 0.00 0.00 2.18
4098 6002 6.551227 GGGAGATTGGCATTAACCTATTTCTT 59.449 38.462 0.00 0.00 30.29 2.52
4102 6006 8.277918 AGATTGGCATTAACCTATTTCTTCTCT 58.722 33.333 0.00 0.00 0.00 3.10
4125 6029 2.233271 CAGATTGCAGTTCTTGGTGGT 58.767 47.619 0.00 0.00 0.00 4.16
4200 6104 8.682936 GGAACCTGATTTATCATGTGATTAGT 57.317 34.615 0.19 0.00 36.11 2.24
4243 6151 4.341827 GCAAGCGGCATTGTTGTT 57.658 50.000 1.45 0.00 43.97 2.83
4244 6152 1.854664 GCAAGCGGCATTGTTGTTG 59.145 52.632 1.45 0.00 43.97 3.33
4245 6153 0.875474 GCAAGCGGCATTGTTGTTGT 60.875 50.000 1.45 0.00 43.97 3.32
4246 6154 1.569708 CAAGCGGCATTGTTGTTGTT 58.430 45.000 1.45 0.00 0.00 2.83
4358 6267 8.946085 TCAGTTATCTGTGTAATGAATTTGACC 58.054 33.333 0.83 0.00 41.91 4.02
4404 6313 5.376854 AATTGCTACAGATTTGTGGTGTC 57.623 39.130 0.00 0.00 38.01 3.67
4487 6398 9.793259 ATCAACTGATTCTTCTACCTAAACAAA 57.207 29.630 0.00 0.00 0.00 2.83
4500 6411 6.210287 ACCTAAACAAACCGTTCAATTTCA 57.790 33.333 0.00 0.00 36.59 2.69
4502 6413 6.921307 ACCTAAACAAACCGTTCAATTTCATC 59.079 34.615 0.00 0.00 36.59 2.92
4503 6414 6.920758 CCTAAACAAACCGTTCAATTTCATCA 59.079 34.615 0.00 0.00 36.59 3.07
4512 6423 7.881142 ACCGTTCAATTTCATCAACTAATGAA 58.119 30.769 0.00 0.00 42.54 2.57
4537 6448 1.017387 GGAAAAGCGTAGGCCATCAG 58.983 55.000 5.01 0.00 41.24 2.90
4540 6451 0.618458 AAAGCGTAGGCCATCAGGAA 59.382 50.000 5.01 0.00 41.24 3.36
4554 6465 1.071699 TCAGGAAAAGGCGCTGTAAGT 59.928 47.619 7.64 0.00 35.30 2.24
4583 6494 6.631016 TCTACTCATACTTAAACACAGGCTG 58.369 40.000 14.16 14.16 0.00 4.85
4587 6498 6.649557 ACTCATACTTAAACACAGGCTGTTAC 59.350 38.462 19.43 0.00 42.70 2.50
4625 6536 9.566432 AGAATATCTTGTCACCTCCATTTTATC 57.434 33.333 0.00 0.00 0.00 1.75
4658 6569 4.950205 TGTCGACTTTAGGGACTTCTTT 57.050 40.909 17.92 0.00 41.75 2.52
4664 6575 5.309638 GACTTTAGGGACTTCTTTTCAGCT 58.690 41.667 0.00 0.00 41.75 4.24
4667 6578 3.584733 AGGGACTTCTTTTCAGCTGTT 57.415 42.857 14.67 0.00 27.25 3.16
4672 6583 4.024472 GGACTTCTTTTCAGCTGTTGAGAC 60.024 45.833 14.67 5.20 37.07 3.36
4680 6591 6.942532 TTTCAGCTGTTGAGACAAATACTT 57.057 33.333 14.67 0.00 37.07 2.24
4689 6600 8.669946 TGTTGAGACAAATACTTCATGTGTAA 57.330 30.769 0.00 0.00 35.05 2.41
4693 6604 7.931407 TGAGACAAATACTTCATGTGTAACTGT 59.069 33.333 13.23 13.23 35.05 3.55
4696 6607 8.445275 ACAAATACTTCATGTGTAACTGTCAA 57.555 30.769 0.00 0.00 32.96 3.18
4705 6616 8.669946 TCATGTGTAACTGTCAAATTTGTAGA 57.330 30.769 22.78 8.82 38.04 2.59
4710 6621 9.016623 GTGTAACTGTCAAATTTGTAGAAAACC 57.983 33.333 22.78 8.31 0.00 3.27
4718 6629 9.750125 GTCAAATTTGTAGAAAACCTGAGAAAT 57.250 29.630 17.47 0.00 0.00 2.17
4725 6636 8.990163 TGTAGAAAACCTGAGAAATTTAAGGT 57.010 30.769 11.95 11.95 45.01 3.50
4746 6657 6.313744 GGTAACTTCTTGCACAGTTTATGT 57.686 37.500 9.74 0.00 45.43 2.29
4899 6810 2.087501 TGGTACATAACAGGTGTGCG 57.912 50.000 0.00 0.00 33.68 5.34
4928 6839 7.707893 AGATACATCATTTACTTGCAAAATGCC 59.292 33.333 14.75 3.58 44.23 4.40
4984 6910 7.767261 ACATTGTTTTTGTACAGCAGTTTAGA 58.233 30.769 0.00 0.00 0.00 2.10
4985 6911 8.247562 ACATTGTTTTTGTACAGCAGTTTAGAA 58.752 29.630 0.00 0.00 0.00 2.10
5197 7123 2.262423 ACCTCAAGTCCAAAGAGCAC 57.738 50.000 0.00 0.00 0.00 4.40
5228 7156 9.747898 TTTTACCTGTAGATGTCATTTGGTATT 57.252 29.630 0.00 0.00 0.00 1.89
5334 7266 4.704540 ACCACTGATTTGTTCAACAGTCAA 59.295 37.500 8.51 0.00 40.84 3.18
5374 7306 2.417933 CAGAAAGTCTATGGCACTGTGC 59.582 50.000 24.02 24.02 44.08 4.57
5418 7350 3.129287 AGCATTGTACTACAGCATTTGGC 59.871 43.478 0.00 0.00 45.30 4.52
5432 7364 0.605319 TTTGGCCTTCCTACAGTGCG 60.605 55.000 3.32 0.00 0.00 5.34
5433 7365 1.476845 TTGGCCTTCCTACAGTGCGA 61.477 55.000 3.32 0.00 0.00 5.10
5444 7376 4.161565 TCCTACAGTGCGAAGGTGATAATT 59.838 41.667 6.65 0.00 0.00 1.40
5445 7377 4.271049 CCTACAGTGCGAAGGTGATAATTG 59.729 45.833 0.00 0.00 0.00 2.32
5446 7378 3.674997 ACAGTGCGAAGGTGATAATTGT 58.325 40.909 0.00 0.00 0.00 2.71
5447 7379 4.072131 ACAGTGCGAAGGTGATAATTGTT 58.928 39.130 0.00 0.00 0.00 2.83
5448 7380 4.083324 ACAGTGCGAAGGTGATAATTGTTG 60.083 41.667 0.00 0.00 0.00 3.33
5449 7381 3.119849 AGTGCGAAGGTGATAATTGTTGC 60.120 43.478 0.00 0.00 0.00 4.17
5450 7382 2.159585 TGCGAAGGTGATAATTGTTGCG 60.160 45.455 0.00 0.00 0.00 4.85
5623 7607 5.718724 ATACTACGGTAGCAATTAGGGAC 57.281 43.478 14.91 0.00 0.00 4.46
5760 7744 0.579630 CGTCTCCTCGTCGAGATCAG 59.420 60.000 23.74 15.00 40.89 2.90
5792 7776 3.243737 TGCATAGAGTATACAGCGTTGGG 60.244 47.826 5.50 0.00 0.00 4.12
5849 7833 6.206634 TCATGTTTTTGTAGCAAACTCCCTAG 59.793 38.462 0.00 0.00 35.50 3.02
5850 7834 5.442391 TGTTTTTGTAGCAAACTCCCTAGT 58.558 37.500 0.00 0.00 35.50 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 235 2.648059 GGCAGCATAATTCTGACCACT 58.352 47.619 0.00 0.00 33.51 4.00
98 262 7.063780 GTGAAAAGCTCATTCCATACAATTTGG 59.936 37.037 9.10 0.00 36.14 3.28
184 348 0.733909 GAAAGGCAAATGCACTCGGC 60.734 55.000 7.80 0.00 44.36 5.54
187 351 1.271656 AGCTGAAAGGCAAATGCACTC 59.728 47.619 7.80 1.22 44.36 3.51
320 484 2.283298 CCGATGCTATGCACTGTTCTT 58.717 47.619 0.00 0.00 43.04 2.52
321 485 1.945387 CCGATGCTATGCACTGTTCT 58.055 50.000 0.00 0.00 43.04 3.01
351 515 4.223923 GGGTAGATAGGATGATGGAGGTTG 59.776 50.000 0.00 0.00 0.00 3.77
362 526 0.178932 TGCCGCTGGGTAGATAGGAT 60.179 55.000 0.00 0.00 34.97 3.24
371 535 1.378514 CTTATTGGTGCCGCTGGGT 60.379 57.895 0.00 0.00 34.97 4.51
490 2332 0.316689 CGTTTTCTTCCGTGCACCAC 60.317 55.000 12.15 0.00 0.00 4.16
494 2336 1.353804 GTGCGTTTTCTTCCGTGCA 59.646 52.632 0.00 0.00 0.00 4.57
542 2384 3.130516 TGCTCGTGTCGATTCTCCTAATT 59.869 43.478 0.00 0.00 34.61 1.40
584 2426 3.942377 ATGGCCGGAATGCAGTGCA 62.942 57.895 22.22 22.22 44.86 4.57
585 2427 3.142838 ATGGCCGGAATGCAGTGC 61.143 61.111 5.05 8.58 0.00 4.40
586 2428 2.777972 CCATGGCCGGAATGCAGTG 61.778 63.158 5.05 0.00 0.00 3.66
587 2429 2.440796 CCATGGCCGGAATGCAGT 60.441 61.111 5.05 0.00 0.00 4.40
588 2430 3.908081 GCCATGGCCGGAATGCAG 61.908 66.667 27.24 0.00 34.56 4.41
614 2456 3.701454 AGGGAACTCGTGCTCTCC 58.299 61.111 0.00 0.00 32.90 3.71
634 2476 2.202810 GCGCTAGCTCCCTGTGAC 60.203 66.667 13.93 0.00 41.01 3.67
635 2477 3.826754 CGCGCTAGCTCCCTGTGA 61.827 66.667 13.93 0.00 42.32 3.58
636 2478 3.764810 CTCGCGCTAGCTCCCTGTG 62.765 68.421 13.93 3.40 42.32 3.66
637 2479 3.522731 CTCGCGCTAGCTCCCTGT 61.523 66.667 13.93 0.00 42.32 4.00
638 2480 4.940593 GCTCGCGCTAGCTCCCTG 62.941 72.222 25.14 0.00 42.32 4.45
645 2487 4.271816 ATCCCGTGCTCGCGCTAG 62.272 66.667 5.56 4.85 36.97 3.42
646 2488 4.266070 GATCCCGTGCTCGCGCTA 62.266 66.667 5.56 0.00 36.97 4.26
650 2492 2.731348 GATCGATCCCGTGCTCGC 60.731 66.667 14.76 0.00 34.94 5.03
651 2493 2.427575 CGATCGATCCCGTGCTCG 60.428 66.667 19.51 3.00 37.05 5.03
654 2496 2.726180 CGTCGATCGATCCCGTGC 60.726 66.667 22.50 5.29 42.86 5.34
656 2498 2.203112 TCCGTCGATCGATCCCGT 60.203 61.111 22.50 0.00 42.86 5.28
657 2499 0.947660 TAGTCCGTCGATCGATCCCG 60.948 60.000 22.50 19.25 42.86 5.14
661 2511 1.674441 TGCTTTAGTCCGTCGATCGAT 59.326 47.619 22.50 7.28 42.86 3.59
670 2520 3.114065 GTCCTATCGTTGCTTTAGTCCG 58.886 50.000 0.00 0.00 0.00 4.79
672 2522 3.114065 CGGTCCTATCGTTGCTTTAGTC 58.886 50.000 0.00 0.00 0.00 2.59
673 2523 2.494870 ACGGTCCTATCGTTGCTTTAGT 59.505 45.455 0.00 0.00 37.61 2.24
678 2528 0.456221 CAGACGGTCCTATCGTTGCT 59.544 55.000 4.14 0.00 41.22 3.91
682 2532 3.108343 CGCAGACGGTCCTATCGT 58.892 61.111 4.14 0.00 44.03 3.73
715 2565 4.539881 GCCGGAGTCGACGAGAGC 62.540 72.222 5.05 8.84 39.00 4.09
739 2589 0.452784 GCGATCGTCAGTTTTGCCAC 60.453 55.000 17.81 0.00 0.00 5.01
853 2710 0.830648 GGTAGGTAGGCTCACATGCA 59.169 55.000 0.00 0.00 34.04 3.96
854 2711 0.830648 TGGTAGGTAGGCTCACATGC 59.169 55.000 0.00 0.00 0.00 4.06
856 2713 2.546899 TGTTGGTAGGTAGGCTCACAT 58.453 47.619 0.00 0.00 0.00 3.21
857 2714 2.018355 TGTTGGTAGGTAGGCTCACA 57.982 50.000 0.00 0.00 0.00 3.58
858 2715 2.614734 GGTTGTTGGTAGGTAGGCTCAC 60.615 54.545 0.00 0.00 0.00 3.51
1119 2997 3.110178 GTGCACTGTACCGGTCGC 61.110 66.667 12.40 6.19 0.00 5.19
1132 3010 0.842030 AGGGATGAGGTTCAGGTGCA 60.842 55.000 0.00 0.00 0.00 4.57
1137 3015 2.500098 TCCGTTTAGGGATGAGGTTCAG 59.500 50.000 0.00 0.00 41.52 3.02
1138 3016 2.500098 CTCCGTTTAGGGATGAGGTTCA 59.500 50.000 0.00 0.00 41.52 3.18
1140 3018 1.838077 CCTCCGTTTAGGGATGAGGTT 59.162 52.381 0.00 0.00 41.52 3.50
1141 3019 1.007963 TCCTCCGTTTAGGGATGAGGT 59.992 52.381 0.00 0.00 42.58 3.85
1142 3020 1.789523 TCCTCCGTTTAGGGATGAGG 58.210 55.000 0.00 0.00 43.21 3.86
1143 3021 3.451178 TCTTTCCTCCGTTTAGGGATGAG 59.549 47.826 0.00 0.00 41.52 2.90
1144 3022 3.446968 TCTTTCCTCCGTTTAGGGATGA 58.553 45.455 0.00 0.00 41.52 2.92
1145 3023 3.451178 TCTCTTTCCTCCGTTTAGGGATG 59.549 47.826 0.00 0.00 41.52 3.51
1152 3030 5.836358 AGCTATCTATCTCTTTCCTCCGTTT 59.164 40.000 0.00 0.00 0.00 3.60
1154 3032 4.993028 AGCTATCTATCTCTTTCCTCCGT 58.007 43.478 0.00 0.00 0.00 4.69
1162 3040 2.452505 GCGGGGAGCTATCTATCTCTT 58.547 52.381 0.00 0.00 44.04 2.85
1202 3080 0.811219 CTGCATCGGAGGCGATTTCA 60.811 55.000 10.28 0.00 0.00 2.69
1289 3171 1.509004 GGTGCCTCTCTCTCGTCAC 59.491 63.158 0.00 0.00 0.00 3.67
1354 3236 2.750237 GAACGCGAGCCCCCATTT 60.750 61.111 15.93 0.00 0.00 2.32
1529 3411 3.679389 AGGAACTGACGAAGCATCAAAT 58.321 40.909 0.00 0.00 37.18 2.32
1570 3452 2.149555 TGTACGCGACATGCACTTG 58.850 52.632 15.93 0.00 46.97 3.16
1608 3490 3.006110 TCAGCAGAAAAGCCTGAAATTGG 59.994 43.478 0.00 0.00 36.29 3.16
1690 3572 6.437162 ACCATGGCAAAATAATCTAACTGTGT 59.563 34.615 13.04 0.00 0.00 3.72
1691 3573 6.866480 ACCATGGCAAAATAATCTAACTGTG 58.134 36.000 13.04 0.00 0.00 3.66
1698 3580 8.773033 AGATTCTAACCATGGCAAAATAATCT 57.227 30.769 13.04 15.11 0.00 2.40
1801 3686 7.042523 GGATGTATGCATGCAAAATTTAGTTCC 60.043 37.037 26.68 15.49 42.14 3.62
1844 3729 4.841443 AGTTGGTTTTACGGTTTGATCC 57.159 40.909 0.00 0.00 0.00 3.36
1855 3740 8.138712 GGTGTTCAATGTTCATAGTTGGTTTTA 58.861 33.333 0.00 0.00 0.00 1.52
1914 3800 6.426937 GTCAAAAGCGCTCTTATATTATGGGA 59.573 38.462 12.06 0.00 31.02 4.37
1944 3830 3.045601 AGAGCGCTTTTGACACTACAT 57.954 42.857 13.26 0.00 0.00 2.29
1945 3831 2.526304 AGAGCGCTTTTGACACTACA 57.474 45.000 13.26 0.00 0.00 2.74
1946 3832 6.830114 ATATAAGAGCGCTTTTGACACTAC 57.170 37.500 22.35 0.08 35.56 2.73
1958 3845 3.119245 TCCGTCCCATAATATAAGAGCGC 60.119 47.826 0.00 0.00 0.00 5.92
2357 4245 5.853572 ACCCTGTTTATACCCAAGAAGAA 57.146 39.130 0.00 0.00 0.00 2.52
2371 4259 8.548877 ACAGATATAACTGTCATTACCCTGTTT 58.451 33.333 9.69 0.00 46.36 2.83
2481 4369 4.534500 TCAACTAAGGGTGGCAGATAGAAA 59.466 41.667 0.00 0.00 0.00 2.52
2549 4437 5.098211 GCAAGAGGCACATCAGATAAAAAC 58.902 41.667 0.00 0.00 43.97 2.43
2779 4679 9.495572 TGACAATGTTTTTAAACCTCAAAAAGT 57.504 25.926 3.13 0.00 35.98 2.66
3103 5003 8.742777 GCCAAGAAGATTGGATTATTATGCATA 58.257 33.333 10.76 1.16 42.06 3.14
3104 5004 7.310237 GGCCAAGAAGATTGGATTATTATGCAT 60.310 37.037 10.76 3.79 42.06 3.96
3105 5005 6.015180 GGCCAAGAAGATTGGATTATTATGCA 60.015 38.462 10.76 0.00 42.06 3.96
3106 5006 6.210185 AGGCCAAGAAGATTGGATTATTATGC 59.790 38.462 5.01 0.00 42.06 3.14
3107 5007 7.771927 AGGCCAAGAAGATTGGATTATTATG 57.228 36.000 5.01 0.00 42.06 1.90
3108 5008 8.230306 AGAAGGCCAAGAAGATTGGATTATTAT 58.770 33.333 5.01 0.00 42.06 1.28
3109 5009 7.586349 AGAAGGCCAAGAAGATTGGATTATTA 58.414 34.615 5.01 0.00 42.06 0.98
3110 5010 6.438620 AGAAGGCCAAGAAGATTGGATTATT 58.561 36.000 5.01 0.00 42.06 1.40
3111 5011 6.023334 AGAAGGCCAAGAAGATTGGATTAT 57.977 37.500 5.01 0.00 42.06 1.28
3112 5012 5.456921 AGAAGGCCAAGAAGATTGGATTA 57.543 39.130 5.01 0.00 42.06 1.75
3113 5013 4.328118 AGAAGGCCAAGAAGATTGGATT 57.672 40.909 5.01 4.34 42.06 3.01
3234 5134 7.851228 TCCTTAATGTCAGTGATCTTGTATGT 58.149 34.615 0.00 0.00 0.00 2.29
3292 5192 0.099436 GCAACTGCAAAGGCTATCGG 59.901 55.000 0.00 0.00 41.91 4.18
3383 5283 3.947196 CAGCCTGCCATTGTTCAGTATAA 59.053 43.478 3.51 0.00 0.00 0.98
3437 5337 1.550065 CGACAGACACTAATCCTGCG 58.450 55.000 0.00 0.00 0.00 5.18
3543 5443 3.609853 TCTCACACTTGTATGGAATGGC 58.390 45.455 0.00 0.00 0.00 4.40
3578 5481 3.319122 AGGAAACAAGAGTCAATGTTGGC 59.681 43.478 13.18 9.44 39.57 4.52
3590 5493 5.393027 GCTGTGAAAGAACAAGGAAACAAGA 60.393 40.000 0.00 0.00 0.00 3.02
3654 5557 1.028330 CACCATGACCAGCAAGCGAT 61.028 55.000 0.00 0.00 0.00 4.58
3698 5601 9.757227 CAAATTAGGACCATTTTTGTCAAGTAA 57.243 29.630 0.00 0.00 34.36 2.24
3750 5653 6.037786 AGTGCTTTAGTATGCTGACTACAA 57.962 37.500 0.00 0.00 31.58 2.41
3824 5728 5.305644 ACAACAGAACAAGTAGGACTCAGAT 59.694 40.000 0.00 0.00 0.00 2.90
4028 5932 5.466728 AGCAATAGAATAACTGGCATGTACG 59.533 40.000 0.00 0.00 0.00 3.67
4034 5938 7.259882 CAAAATGAGCAATAGAATAACTGGCA 58.740 34.615 0.00 0.00 0.00 4.92
4047 5951 2.532843 ACCAGAGGCAAAATGAGCAAT 58.467 42.857 0.00 0.00 0.00 3.56
4051 5955 4.397417 CCTAAGAACCAGAGGCAAAATGAG 59.603 45.833 0.00 0.00 0.00 2.90
4060 5964 3.135530 CCAATCTCCCTAAGAACCAGAGG 59.864 52.174 0.00 0.00 37.61 3.69
4067 5971 5.193728 AGGTTAATGCCAATCTCCCTAAGAA 59.806 40.000 0.00 0.00 37.61 2.52
4073 5977 6.071320 AGAAATAGGTTAATGCCAATCTCCC 58.929 40.000 0.00 0.00 0.00 4.30
4125 6029 1.428912 AGGAATGTCCCCAGCAAAGAA 59.571 47.619 0.00 0.00 37.19 2.52
4210 6114 2.159085 GCTTGCTAGGGATGTTAGTCGT 60.159 50.000 0.00 0.00 0.00 4.34
4241 6149 7.148356 CCCCGGTAGTTTCTTCTAAATAACAAC 60.148 40.741 0.00 0.00 0.00 3.32
4242 6150 6.880529 CCCCGGTAGTTTCTTCTAAATAACAA 59.119 38.462 0.00 0.00 0.00 2.83
4243 6151 6.213195 TCCCCGGTAGTTTCTTCTAAATAACA 59.787 38.462 0.00 0.00 0.00 2.41
4244 6152 6.643388 TCCCCGGTAGTTTCTTCTAAATAAC 58.357 40.000 0.00 0.00 0.00 1.89
4245 6153 6.126968 CCTCCCCGGTAGTTTCTTCTAAATAA 60.127 42.308 0.00 0.00 0.00 1.40
4246 6154 5.364735 CCTCCCCGGTAGTTTCTTCTAAATA 59.635 44.000 0.00 0.00 0.00 1.40
4298 6206 1.583967 CTAGAGGCGAACGTGCTCG 60.584 63.158 6.63 6.63 41.84 5.03
4306 6214 0.532573 CTCAGTTGGCTAGAGGCGAA 59.467 55.000 0.00 0.00 44.42 4.70
4338 6246 7.554118 CCACTAGGTCAAATTCATTACACAGAT 59.446 37.037 0.00 0.00 0.00 2.90
4371 6280 5.913137 TCTGTAGCAATTTAAACATGGGG 57.087 39.130 0.00 0.00 0.00 4.96
4404 6313 5.911421 TCGAGTGACAAACAAATGTAATCG 58.089 37.500 0.00 0.00 32.57 3.34
4468 6379 7.172019 TGAACGGTTTGTTTAGGTAGAAGAATC 59.828 37.037 0.00 0.00 42.09 2.52
4475 6386 7.419204 TGAAATTGAACGGTTTGTTTAGGTAG 58.581 34.615 0.00 0.00 42.09 3.18
4479 6390 7.922505 TGATGAAATTGAACGGTTTGTTTAG 57.077 32.000 0.00 0.00 42.09 1.85
4487 6398 7.447374 TCATTAGTTGATGAAATTGAACGGT 57.553 32.000 0.00 0.00 33.31 4.83
4500 6411 8.184192 CGCTTTTCCATTAGTTCATTAGTTGAT 58.816 33.333 0.00 0.00 33.34 2.57
4502 6413 7.305474 ACGCTTTTCCATTAGTTCATTAGTTG 58.695 34.615 0.00 0.00 0.00 3.16
4503 6414 7.448748 ACGCTTTTCCATTAGTTCATTAGTT 57.551 32.000 0.00 0.00 0.00 2.24
4512 6423 2.026636 TGGCCTACGCTTTTCCATTAGT 60.027 45.455 3.32 0.00 34.44 2.24
4515 6426 2.024414 GATGGCCTACGCTTTTCCATT 58.976 47.619 3.32 0.00 37.63 3.16
4519 6430 1.017387 CCTGATGGCCTACGCTTTTC 58.983 55.000 3.32 0.00 34.44 2.29
4537 6448 1.519408 TCACTTACAGCGCCTTTTCC 58.481 50.000 2.29 0.00 0.00 3.13
4540 6451 3.412386 AGATTTCACTTACAGCGCCTTT 58.588 40.909 2.29 0.00 0.00 3.11
4554 6465 9.653287 CCTGTGTTTAAGTATGAGTAGATTTCA 57.347 33.333 0.00 0.00 0.00 2.69
4625 6536 6.017934 CCCTAAAGTCGACATTATTCACCATG 60.018 42.308 19.50 2.12 0.00 3.66
4658 6569 6.054941 TGAAGTATTTGTCTCAACAGCTGAA 58.945 36.000 23.35 1.03 36.57 3.02
4664 6575 8.556194 GTTACACATGAAGTATTTGTCTCAACA 58.444 33.333 0.00 0.00 32.26 3.33
4667 6578 7.931407 ACAGTTACACATGAAGTATTTGTCTCA 59.069 33.333 0.00 0.00 32.26 3.27
4672 6583 9.897744 ATTTGACAGTTACACATGAAGTATTTG 57.102 29.630 0.00 6.32 0.00 2.32
4680 6591 8.669946 TCTACAAATTTGACAGTTACACATGA 57.330 30.769 24.64 0.00 0.00 3.07
4689 6600 7.556275 TCTCAGGTTTTCTACAAATTTGACAGT 59.444 33.333 24.64 4.75 0.00 3.55
4710 6621 8.567948 TGCAAGAAGTTACCTTAAATTTCTCAG 58.432 33.333 0.00 0.00 0.00 3.35
4718 6629 7.399245 AAACTGTGCAAGAAGTTACCTTAAA 57.601 32.000 10.20 0.00 35.60 1.52
4724 6635 6.371389 GGACATAAACTGTGCAAGAAGTTAC 58.629 40.000 10.20 2.82 44.95 2.50
4725 6636 6.554334 GGACATAAACTGTGCAAGAAGTTA 57.446 37.500 10.20 0.00 44.95 2.24
4739 6650 6.206634 TGGAGACAGAATTGTTGGACATAAAC 59.793 38.462 0.00 0.00 37.76 2.01
4899 6810 9.793252 ATTTTGCAAGTAAATGATGTATCTGAC 57.207 29.630 0.00 0.00 0.00 3.51
4928 6839 6.692486 AGAGGATGGTATTTTATCTGTAGCG 58.308 40.000 0.00 0.00 0.00 4.26
4972 6883 7.013655 ACACATGAGAAATTTCTAAACTGCTGT 59.986 33.333 20.51 11.13 37.73 4.40
4984 6910 9.077885 ACCACTGTTATTACACATGAGAAATTT 57.922 29.630 0.00 0.00 0.00 1.82
4985 6911 8.635765 ACCACTGTTATTACACATGAGAAATT 57.364 30.769 0.00 0.00 0.00 1.82
5072 6998 7.332557 ACAACAAATCATCCAATGCATGTTAT 58.667 30.769 0.00 0.00 32.67 1.89
5075 7001 5.155278 ACAACAAATCATCCAATGCATGT 57.845 34.783 0.00 0.00 0.00 3.21
5171 7097 3.053991 TCTTTGGACTTGAGGTTTCCACA 60.054 43.478 0.00 0.00 39.20 4.17
5225 7153 2.026262 GCTCTTTGTCCCAGGTCCAATA 60.026 50.000 0.00 0.00 0.00 1.90
5228 7156 0.768221 AGCTCTTTGTCCCAGGTCCA 60.768 55.000 0.00 0.00 0.00 4.02
5334 7266 3.257375 TCTGTAATGACTACACGGTGCTT 59.743 43.478 8.30 0.00 35.50 3.91
5432 7364 4.419522 ACACGCAACAATTATCACCTTC 57.580 40.909 0.00 0.00 0.00 3.46
5433 7365 4.545610 CAACACGCAACAATTATCACCTT 58.454 39.130 0.00 0.00 0.00 3.50
5444 7376 2.202946 TCCTCGCAACACGCAACA 60.203 55.556 0.00 0.00 42.60 3.33
5445 7377 2.159272 GACTCCTCGCAACACGCAAC 62.159 60.000 0.00 0.00 42.60 4.17
5446 7378 1.954146 GACTCCTCGCAACACGCAA 60.954 57.895 0.00 0.00 42.60 4.85
5447 7379 2.355837 GACTCCTCGCAACACGCA 60.356 61.111 0.00 0.00 42.60 5.24
5448 7380 0.457853 TATGACTCCTCGCAACACGC 60.458 55.000 0.00 0.00 43.23 5.34
5449 7381 1.269166 GTATGACTCCTCGCAACACG 58.731 55.000 0.00 0.00 45.62 4.49
5450 7382 2.263077 CTGTATGACTCCTCGCAACAC 58.737 52.381 0.00 0.00 0.00 3.32
5550 7531 6.770303 TCAGACTTTTGGATGTTGTCACATAA 59.230 34.615 0.00 0.00 44.22 1.90
5570 7554 9.696917 ATTGTAATTCAAAAGATTGGTTCAGAC 57.303 29.630 0.00 0.00 39.62 3.51
5608 7592 2.919228 CCAGTGTCCCTAATTGCTACC 58.081 52.381 0.00 0.00 0.00 3.18
5623 7607 0.169672 CGCTGAGAAATTGGCCAGTG 59.830 55.000 5.11 0.00 0.00 3.66
5727 7711 4.499865 CGAGGAGACGATGACCATTTACAT 60.500 45.833 0.00 0.00 35.09 2.29
5760 7744 0.108138 ACTCTATGCACCGTCTTGGC 60.108 55.000 0.00 0.00 43.94 4.52
5792 7776 1.270678 ACCGGTGACTACTTTTCAGGC 60.271 52.381 6.12 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.