Multiple sequence alignment - TraesCS3A01G147400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G147400 chr3A 100.000 2445 0 0 1 2445 128660215 128657771 0.000000e+00 4516.0
1 TraesCS3A01G147400 chr3A 96.460 113 3 1 1 112 634691484 634691372 4.150000e-43 185.0
2 TraesCS3A01G147400 chr3A 96.429 112 2 2 1 110 541816403 541816514 1.490000e-42 183.0
3 TraesCS3A01G147400 chr3A 92.063 126 8 2 1 124 725644193 725644068 2.500000e-40 176.0
4 TraesCS3A01G147400 chr2A 95.954 1829 56 3 618 2445 276858466 276860277 0.000000e+00 2952.0
5 TraesCS3A01G147400 chr2A 100.000 37 0 0 545 581 515142376 515142340 4.360000e-08 69.4
6 TraesCS3A01G147400 chr4A 95.674 1826 77 2 621 2445 566590024 566588200 0.000000e+00 2933.0
7 TraesCS3A01G147400 chr4A 95.701 1791 75 2 621 2410 566610726 566608937 0.000000e+00 2880.0
8 TraesCS3A01G147400 chr5A 94.426 1830 76 5 617 2445 136567987 136569791 0.000000e+00 2791.0
9 TraesCS3A01G147400 chr5A 97.248 109 3 0 1 109 16911193 16911085 4.150000e-43 185.0
10 TraesCS3A01G147400 chr3B 92.555 1867 133 5 585 2445 367032933 367031067 0.000000e+00 2673.0
11 TraesCS3A01G147400 chr3B 92.229 1866 138 7 584 2445 379653271 379655133 0.000000e+00 2636.0
12 TraesCS3A01G147400 chr3B 100.000 36 0 0 545 580 368551075 368551110 1.570000e-07 67.6
13 TraesCS3A01G147400 chr6B 92.722 1800 123 8 650 2445 129700708 129702503 0.000000e+00 2591.0
14 TraesCS3A01G147400 chr6B 92.063 126 8 2 1 124 256138447 256138572 2.500000e-40 176.0
15 TraesCS3A01G147400 chr5B 91.454 1884 126 10 573 2445 328273322 328275181 0.000000e+00 2555.0
16 TraesCS3A01G147400 chr6D 91.795 1560 103 7 888 2445 17043132 17041596 0.000000e+00 2148.0
17 TraesCS3A01G147400 chr6D 100.000 40 0 0 544 583 327417335 327417296 9.380000e-10 75.0
18 TraesCS3A01G147400 chr6A 91.123 552 46 1 612 1160 214076438 214075887 0.000000e+00 745.0
19 TraesCS3A01G147400 chr6A 94.872 117 4 2 1 115 544058192 544058076 5.370000e-42 182.0
20 TraesCS3A01G147400 chr1A 94.937 474 23 1 110 583 389790803 389791275 0.000000e+00 741.0
21 TraesCS3A01G147400 chr1A 78.261 161 31 4 176 334 573819803 573819961 1.550000e-17 100.0
22 TraesCS3A01G147400 chr1D 91.364 440 34 4 115 550 309912693 309913132 1.250000e-167 599.0
23 TraesCS3A01G147400 chr1D 100.000 38 0 0 544 581 343344979 343345016 1.210000e-08 71.3
24 TraesCS3A01G147400 chr4D 96.296 162 6 0 573 734 277696374 277696535 1.440000e-67 267.0
25 TraesCS3A01G147400 chr4D 93.210 162 11 0 573 734 380699819 380699658 3.140000e-59 239.0
26 TraesCS3A01G147400 chr4D 75.934 241 45 11 136 371 62794144 62794376 7.150000e-21 111.0
27 TraesCS3A01G147400 chr4D 95.000 40 2 0 545 584 204623554 204623515 2.030000e-06 63.9
28 TraesCS3A01G147400 chr7D 93.827 162 10 0 573 734 557275538 557275699 6.750000e-61 244.0
29 TraesCS3A01G147400 chr7D 75.000 220 42 12 152 366 140231136 140230925 3.350000e-14 89.8
30 TraesCS3A01G147400 chr7A 97.297 111 1 2 1 109 163942187 163942297 1.150000e-43 187.0
31 TraesCS3A01G147400 chr7A 96.460 113 2 2 1 111 107107730 107107842 4.150000e-43 185.0
32 TraesCS3A01G147400 chr7A 92.800 125 6 3 1 122 146866428 146866552 6.950000e-41 178.0
33 TraesCS3A01G147400 chr3D 78.846 208 32 11 184 386 275780019 275780219 1.970000e-26 130.0
34 TraesCS3A01G147400 chr2B 79.545 176 28 7 213 383 37343719 37343547 4.270000e-23 119.0
35 TraesCS3A01G147400 chr4B 100.000 37 0 0 545 581 613006176 613006212 4.360000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G147400 chr3A 128657771 128660215 2444 True 4516 4516 100.000 1 2445 1 chr3A.!!$R1 2444
1 TraesCS3A01G147400 chr2A 276858466 276860277 1811 False 2952 2952 95.954 618 2445 1 chr2A.!!$F1 1827
2 TraesCS3A01G147400 chr4A 566588200 566590024 1824 True 2933 2933 95.674 621 2445 1 chr4A.!!$R1 1824
3 TraesCS3A01G147400 chr4A 566608937 566610726 1789 True 2880 2880 95.701 621 2410 1 chr4A.!!$R2 1789
4 TraesCS3A01G147400 chr5A 136567987 136569791 1804 False 2791 2791 94.426 617 2445 1 chr5A.!!$F1 1828
5 TraesCS3A01G147400 chr3B 367031067 367032933 1866 True 2673 2673 92.555 585 2445 1 chr3B.!!$R1 1860
6 TraesCS3A01G147400 chr3B 379653271 379655133 1862 False 2636 2636 92.229 584 2445 1 chr3B.!!$F2 1861
7 TraesCS3A01G147400 chr6B 129700708 129702503 1795 False 2591 2591 92.722 650 2445 1 chr6B.!!$F1 1795
8 TraesCS3A01G147400 chr5B 328273322 328275181 1859 False 2555 2555 91.454 573 2445 1 chr5B.!!$F1 1872
9 TraesCS3A01G147400 chr6D 17041596 17043132 1536 True 2148 2148 91.795 888 2445 1 chr6D.!!$R1 1557
10 TraesCS3A01G147400 chr6A 214075887 214076438 551 True 745 745 91.123 612 1160 1 chr6A.!!$R1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
390 391 0.103930 TGCCTCCCCTTATATGGGCT 60.104 55.0 16.76 0.0 45.78 5.19 F
443 444 0.107459 GCCCAAGATGACCCAGAGAC 60.107 60.0 0.00 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1366 1397 1.736586 GACCATGAGCCGATCGAGT 59.263 57.895 18.66 2.18 0.00 4.18 R
1494 1525 1.854126 CAAACGGTTGTTCGTACGTCT 59.146 47.619 16.05 0.00 43.07 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.276461 ACAAGTTATGTAGATGCATCCGA 57.724 39.130 23.06 8.95 41.63 4.55
28 29 5.858381 ACAAGTTATGTAGATGCATCCGAT 58.142 37.500 23.06 14.21 41.63 4.18
29 30 5.928839 ACAAGTTATGTAGATGCATCCGATC 59.071 40.000 23.06 11.27 41.63 3.69
30 31 5.728637 AGTTATGTAGATGCATCCGATCA 57.271 39.130 23.06 16.08 0.00 2.92
31 32 5.473931 AGTTATGTAGATGCATCCGATCAC 58.526 41.667 23.06 13.10 0.00 3.06
32 33 5.244851 AGTTATGTAGATGCATCCGATCACT 59.755 40.000 23.06 14.89 0.00 3.41
33 34 3.650070 TGTAGATGCATCCGATCACTC 57.350 47.619 23.06 5.75 0.00 3.51
34 35 2.030805 TGTAGATGCATCCGATCACTCG 60.031 50.000 23.06 0.00 44.62 4.18
35 36 1.035923 AGATGCATCCGATCACTCGT 58.964 50.000 23.06 0.00 43.49 4.18
36 37 1.410517 AGATGCATCCGATCACTCGTT 59.589 47.619 23.06 0.00 43.49 3.85
37 38 1.524355 GATGCATCCGATCACTCGTTG 59.476 52.381 16.23 0.00 43.49 4.10
38 39 1.083806 TGCATCCGATCACTCGTTGC 61.084 55.000 11.08 11.08 45.20 4.17
39 40 0.807667 GCATCCGATCACTCGTTGCT 60.808 55.000 10.85 0.00 43.33 3.91
40 41 1.536072 GCATCCGATCACTCGTTGCTA 60.536 52.381 10.85 0.00 43.33 3.49
41 42 2.389059 CATCCGATCACTCGTTGCTAG 58.611 52.381 0.00 0.00 43.49 3.42
42 43 1.746470 TCCGATCACTCGTTGCTAGA 58.254 50.000 0.00 0.00 43.49 2.43
43 44 2.298610 TCCGATCACTCGTTGCTAGAT 58.701 47.619 0.00 0.00 43.49 1.98
44 45 2.033424 TCCGATCACTCGTTGCTAGATG 59.967 50.000 0.00 0.00 43.49 2.90
45 46 2.033424 CCGATCACTCGTTGCTAGATGA 59.967 50.000 0.00 0.00 43.49 2.92
46 47 3.489229 CCGATCACTCGTTGCTAGATGAA 60.489 47.826 0.00 0.00 43.49 2.57
47 48 3.483922 CGATCACTCGTTGCTAGATGAAC 59.516 47.826 0.00 0.00 40.07 3.18
48 49 4.677584 GATCACTCGTTGCTAGATGAACT 58.322 43.478 0.00 0.00 0.00 3.01
49 50 4.098055 TCACTCGTTGCTAGATGAACTC 57.902 45.455 0.00 0.00 0.00 3.01
50 51 3.506067 TCACTCGTTGCTAGATGAACTCA 59.494 43.478 0.00 0.00 0.00 3.41
51 52 4.158579 TCACTCGTTGCTAGATGAACTCAT 59.841 41.667 0.00 0.00 39.70 2.90
52 53 5.357032 TCACTCGTTGCTAGATGAACTCATA 59.643 40.000 0.00 0.00 36.57 2.15
53 54 5.685068 CACTCGTTGCTAGATGAACTCATAG 59.315 44.000 0.00 0.00 36.57 2.23
54 55 5.590663 ACTCGTTGCTAGATGAACTCATAGA 59.409 40.000 0.00 0.00 36.57 1.98
55 56 6.264292 ACTCGTTGCTAGATGAACTCATAGAT 59.736 38.462 0.00 0.00 36.57 1.98
56 57 6.442112 TCGTTGCTAGATGAACTCATAGATG 58.558 40.000 0.00 0.00 36.57 2.90
57 58 5.632764 CGTTGCTAGATGAACTCATAGATGG 59.367 44.000 0.00 0.00 36.57 3.51
58 59 6.515696 CGTTGCTAGATGAACTCATAGATGGA 60.516 42.308 0.00 0.00 36.57 3.41
59 60 6.338214 TGCTAGATGAACTCATAGATGGAC 57.662 41.667 0.00 0.00 36.57 4.02
60 61 5.244851 TGCTAGATGAACTCATAGATGGACC 59.755 44.000 0.00 0.00 36.57 4.46
61 62 5.480073 GCTAGATGAACTCATAGATGGACCT 59.520 44.000 0.00 0.00 36.57 3.85
62 63 6.014669 GCTAGATGAACTCATAGATGGACCTT 60.015 42.308 0.00 0.00 36.57 3.50
63 64 6.172136 AGATGAACTCATAGATGGACCTTG 57.828 41.667 0.00 0.00 36.57 3.61
64 65 4.760530 TGAACTCATAGATGGACCTTGG 57.239 45.455 0.00 0.00 0.00 3.61
65 66 4.104086 TGAACTCATAGATGGACCTTGGT 58.896 43.478 0.00 0.00 0.00 3.67
66 67 4.080919 TGAACTCATAGATGGACCTTGGTG 60.081 45.833 0.00 0.00 0.00 4.17
67 68 3.724478 ACTCATAGATGGACCTTGGTGA 58.276 45.455 0.00 0.00 0.00 4.02
68 69 4.104086 ACTCATAGATGGACCTTGGTGAA 58.896 43.478 0.00 0.00 0.00 3.18
69 70 4.536090 ACTCATAGATGGACCTTGGTGAAA 59.464 41.667 0.00 0.00 0.00 2.69
70 71 4.843728 TCATAGATGGACCTTGGTGAAAC 58.156 43.478 0.00 0.00 0.00 2.78
103 104 5.809719 TTTTTGTTTTCTGCAATGTTCCC 57.190 34.783 0.00 0.00 0.00 3.97
104 105 3.467374 TTGTTTTCTGCAATGTTCCCC 57.533 42.857 0.00 0.00 0.00 4.81
105 106 2.392662 TGTTTTCTGCAATGTTCCCCA 58.607 42.857 0.00 0.00 0.00 4.96
106 107 2.768527 TGTTTTCTGCAATGTTCCCCAA 59.231 40.909 0.00 0.00 0.00 4.12
107 108 3.130633 GTTTTCTGCAATGTTCCCCAAC 58.869 45.455 0.00 0.00 0.00 3.77
108 109 2.079170 TTCTGCAATGTTCCCCAACA 57.921 45.000 0.00 0.00 46.71 3.33
115 116 3.743714 TGTTCCCCAACATCTGGTG 57.256 52.632 0.00 0.00 44.76 4.17
116 117 0.539438 TGTTCCCCAACATCTGGTGC 60.539 55.000 0.00 0.00 44.76 5.01
117 118 1.076549 TTCCCCAACATCTGGTGCC 59.923 57.895 0.00 0.00 44.76 5.01
118 119 1.434513 TTCCCCAACATCTGGTGCCT 61.435 55.000 0.00 0.00 44.76 4.75
119 120 1.679977 CCCCAACATCTGGTGCCTG 60.680 63.158 0.00 0.00 44.76 4.85
120 121 1.379916 CCCAACATCTGGTGCCTGA 59.620 57.895 0.35 0.35 44.76 3.86
121 122 0.962356 CCCAACATCTGGTGCCTGAC 60.962 60.000 0.00 0.00 44.76 3.51
122 123 1.300971 CCAACATCTGGTGCCTGACG 61.301 60.000 0.00 0.00 40.78 4.35
123 124 1.672356 AACATCTGGTGCCTGACGC 60.672 57.895 0.00 0.00 38.31 5.19
124 125 3.190849 CATCTGGTGCCTGACGCG 61.191 66.667 3.53 3.53 42.08 6.01
131 132 3.997397 TGCCTGACGCGCCAACTA 61.997 61.111 5.73 0.00 42.08 2.24
132 133 2.740826 GCCTGACGCGCCAACTAA 60.741 61.111 5.73 0.00 0.00 2.24
133 134 3.023591 GCCTGACGCGCCAACTAAC 62.024 63.158 5.73 0.00 0.00 2.34
134 135 1.666553 CCTGACGCGCCAACTAACA 60.667 57.895 5.73 0.00 0.00 2.41
135 136 1.019278 CCTGACGCGCCAACTAACAT 61.019 55.000 5.73 0.00 0.00 2.71
136 137 0.796312 CTGACGCGCCAACTAACATT 59.204 50.000 5.73 0.00 0.00 2.71
137 138 0.515127 TGACGCGCCAACTAACATTG 59.485 50.000 5.73 0.00 0.00 2.82
138 139 0.793104 GACGCGCCAACTAACATTGC 60.793 55.000 5.73 0.00 0.00 3.56
139 140 1.863012 CGCGCCAACTAACATTGCG 60.863 57.895 0.00 0.00 38.04 4.85
140 141 1.514014 GCGCCAACTAACATTGCGG 60.514 57.895 0.00 0.00 33.00 5.69
141 142 1.917782 GCGCCAACTAACATTGCGGA 61.918 55.000 0.00 0.00 33.00 5.54
142 143 0.519519 CGCCAACTAACATTGCGGAA 59.480 50.000 0.00 0.00 0.00 4.30
143 144 1.068885 CGCCAACTAACATTGCGGAAA 60.069 47.619 0.00 0.00 0.00 3.13
144 145 2.605823 CGCCAACTAACATTGCGGAAAA 60.606 45.455 0.00 0.00 0.00 2.29
145 146 2.729360 GCCAACTAACATTGCGGAAAAC 59.271 45.455 0.00 0.00 0.00 2.43
146 147 3.313690 CCAACTAACATTGCGGAAAACC 58.686 45.455 0.00 0.00 0.00 3.27
147 148 2.977169 CAACTAACATTGCGGAAAACCG 59.023 45.455 4.21 4.21 0.00 4.44
148 149 2.223745 ACTAACATTGCGGAAAACCGT 58.776 42.857 10.25 0.00 35.43 4.83
149 150 2.224784 ACTAACATTGCGGAAAACCGTC 59.775 45.455 10.25 3.83 35.43 4.79
150 151 1.025812 AACATTGCGGAAAACCGTCA 58.974 45.000 10.25 6.19 35.43 4.35
151 152 0.591170 ACATTGCGGAAAACCGTCAG 59.409 50.000 10.25 1.80 35.43 3.51
152 153 0.591170 CATTGCGGAAAACCGTCAGT 59.409 50.000 10.25 3.58 35.43 3.41
153 154 1.801771 CATTGCGGAAAACCGTCAGTA 59.198 47.619 10.25 0.00 35.43 2.74
154 155 1.219646 TTGCGGAAAACCGTCAGTAC 58.780 50.000 10.25 0.00 35.43 2.73
155 156 0.600782 TGCGGAAAACCGTCAGTACC 60.601 55.000 10.25 0.00 35.43 3.34
156 157 1.293963 GCGGAAAACCGTCAGTACCC 61.294 60.000 10.25 0.00 35.43 3.69
157 158 0.319405 CGGAAAACCGTCAGTACCCT 59.681 55.000 0.00 0.00 0.00 4.34
158 159 1.670967 CGGAAAACCGTCAGTACCCTC 60.671 57.143 0.00 0.00 0.00 4.30
159 160 1.622312 GGAAAACCGTCAGTACCCTCT 59.378 52.381 0.00 0.00 0.00 3.69
160 161 2.612221 GGAAAACCGTCAGTACCCTCTG 60.612 54.545 0.00 0.00 36.85 3.35
161 162 1.713297 AAACCGTCAGTACCCTCTGT 58.287 50.000 0.00 0.00 36.85 3.41
162 163 1.713297 AACCGTCAGTACCCTCTGTT 58.287 50.000 0.00 0.00 36.85 3.16
163 164 0.966920 ACCGTCAGTACCCTCTGTTG 59.033 55.000 0.00 0.00 36.85 3.33
164 165 0.966920 CCGTCAGTACCCTCTGTTGT 59.033 55.000 0.00 0.00 36.85 3.32
165 166 1.336887 CCGTCAGTACCCTCTGTTGTG 60.337 57.143 0.00 0.00 36.85 3.33
166 167 1.340248 CGTCAGTACCCTCTGTTGTGT 59.660 52.381 0.00 0.00 36.85 3.72
167 168 2.223971 CGTCAGTACCCTCTGTTGTGTT 60.224 50.000 0.00 0.00 36.85 3.32
168 169 3.005050 CGTCAGTACCCTCTGTTGTGTTA 59.995 47.826 0.00 0.00 36.85 2.41
169 170 4.304939 GTCAGTACCCTCTGTTGTGTTAC 58.695 47.826 0.00 0.00 36.85 2.50
170 171 4.038883 GTCAGTACCCTCTGTTGTGTTACT 59.961 45.833 0.00 0.00 36.85 2.24
171 172 5.242393 GTCAGTACCCTCTGTTGTGTTACTA 59.758 44.000 0.00 0.00 36.85 1.82
172 173 5.475909 TCAGTACCCTCTGTTGTGTTACTAG 59.524 44.000 0.00 0.00 36.85 2.57
173 174 3.679824 ACCCTCTGTTGTGTTACTAGC 57.320 47.619 0.00 0.00 0.00 3.42
174 175 2.029290 ACCCTCTGTTGTGTTACTAGCG 60.029 50.000 0.00 0.00 0.00 4.26
175 176 2.029290 CCCTCTGTTGTGTTACTAGCGT 60.029 50.000 0.00 0.00 0.00 5.07
176 177 2.987149 CCTCTGTTGTGTTACTAGCGTG 59.013 50.000 0.00 0.00 0.00 5.34
177 178 3.552273 CCTCTGTTGTGTTACTAGCGTGT 60.552 47.826 0.00 0.00 0.00 4.49
178 179 3.377439 TCTGTTGTGTTACTAGCGTGTG 58.623 45.455 0.00 0.00 0.00 3.82
179 180 2.475111 CTGTTGTGTTACTAGCGTGTGG 59.525 50.000 0.00 0.00 0.00 4.17
180 181 2.159071 TGTTGTGTTACTAGCGTGTGGT 60.159 45.455 0.00 0.00 0.00 4.16
181 182 2.867975 GTTGTGTTACTAGCGTGTGGTT 59.132 45.455 0.00 0.00 0.00 3.67
182 183 4.050553 GTTGTGTTACTAGCGTGTGGTTA 58.949 43.478 0.00 0.00 0.00 2.85
183 184 3.904571 TGTGTTACTAGCGTGTGGTTAG 58.095 45.455 0.00 0.00 35.72 2.34
184 185 3.569277 TGTGTTACTAGCGTGTGGTTAGA 59.431 43.478 0.00 0.00 33.96 2.10
185 186 4.037803 TGTGTTACTAGCGTGTGGTTAGAA 59.962 41.667 0.00 0.00 33.96 2.10
186 187 4.620184 GTGTTACTAGCGTGTGGTTAGAAG 59.380 45.833 0.00 0.00 33.96 2.85
187 188 4.279169 TGTTACTAGCGTGTGGTTAGAAGT 59.721 41.667 0.00 0.00 33.96 3.01
188 189 3.572604 ACTAGCGTGTGGTTAGAAGTC 57.427 47.619 0.00 0.00 33.96 3.01
189 190 3.155501 ACTAGCGTGTGGTTAGAAGTCT 58.844 45.455 0.00 0.00 33.96 3.24
190 191 3.573110 ACTAGCGTGTGGTTAGAAGTCTT 59.427 43.478 0.00 0.00 33.96 3.01
191 192 4.763793 ACTAGCGTGTGGTTAGAAGTCTTA 59.236 41.667 0.00 0.00 33.96 2.10
192 193 4.595762 AGCGTGTGGTTAGAAGTCTTAA 57.404 40.909 0.00 0.00 0.00 1.85
193 194 4.952460 AGCGTGTGGTTAGAAGTCTTAAA 58.048 39.130 0.00 0.00 0.00 1.52
194 195 5.548406 AGCGTGTGGTTAGAAGTCTTAAAT 58.452 37.500 0.00 0.00 0.00 1.40
195 196 5.638234 AGCGTGTGGTTAGAAGTCTTAAATC 59.362 40.000 0.00 0.00 0.00 2.17
196 197 5.407387 GCGTGTGGTTAGAAGTCTTAAATCA 59.593 40.000 0.00 0.00 0.00 2.57
197 198 6.401153 GCGTGTGGTTAGAAGTCTTAAATCAG 60.401 42.308 0.00 0.00 0.00 2.90
198 199 6.866770 CGTGTGGTTAGAAGTCTTAAATCAGA 59.133 38.462 0.00 0.00 0.00 3.27
199 200 7.062371 CGTGTGGTTAGAAGTCTTAAATCAGAG 59.938 40.741 0.00 0.00 0.00 3.35
200 201 7.332182 GTGTGGTTAGAAGTCTTAAATCAGAGG 59.668 40.741 0.00 0.00 0.00 3.69
201 202 7.016268 TGTGGTTAGAAGTCTTAAATCAGAGGT 59.984 37.037 0.00 0.00 0.00 3.85
202 203 7.546316 GTGGTTAGAAGTCTTAAATCAGAGGTC 59.454 40.741 0.00 0.00 0.00 3.85
203 204 7.234782 TGGTTAGAAGTCTTAAATCAGAGGTCA 59.765 37.037 0.00 0.00 0.00 4.02
204 205 7.546316 GGTTAGAAGTCTTAAATCAGAGGTCAC 59.454 40.741 0.00 0.00 0.00 3.67
205 206 5.715070 AGAAGTCTTAAATCAGAGGTCACG 58.285 41.667 0.00 0.00 0.00 4.35
206 207 3.851098 AGTCTTAAATCAGAGGTCACGC 58.149 45.455 0.00 0.00 0.00 5.34
207 208 2.599082 GTCTTAAATCAGAGGTCACGCG 59.401 50.000 3.53 3.53 0.00 6.01
208 209 1.927174 CTTAAATCAGAGGTCACGCGG 59.073 52.381 12.47 0.00 0.00 6.46
209 210 0.892755 TAAATCAGAGGTCACGCGGT 59.107 50.000 12.47 0.00 0.00 5.68
210 211 0.670546 AAATCAGAGGTCACGCGGTG 60.671 55.000 12.47 6.71 34.45 4.94
211 212 2.507110 AATCAGAGGTCACGCGGTGG 62.507 60.000 12.47 0.00 33.87 4.61
212 213 3.991051 CAGAGGTCACGCGGTGGT 61.991 66.667 12.47 0.00 33.87 4.16
213 214 3.231736 AGAGGTCACGCGGTGGTT 61.232 61.111 12.47 0.00 33.87 3.67
214 215 2.280592 GAGGTCACGCGGTGGTTT 60.281 61.111 12.47 0.00 33.87 3.27
215 216 1.890510 GAGGTCACGCGGTGGTTTT 60.891 57.895 12.47 0.00 33.87 2.43
216 217 0.600782 GAGGTCACGCGGTGGTTTTA 60.601 55.000 12.47 0.00 33.87 1.52
217 218 0.881600 AGGTCACGCGGTGGTTTTAC 60.882 55.000 12.47 0.32 33.87 2.01
218 219 1.570967 GTCACGCGGTGGTTTTACC 59.429 57.895 12.47 0.00 39.22 2.85
219 220 1.597578 TCACGCGGTGGTTTTACCC 60.598 57.895 12.47 0.00 37.50 3.69
220 221 1.892862 CACGCGGTGGTTTTACCCA 60.893 57.895 12.47 0.00 37.50 4.51
221 222 1.598685 ACGCGGTGGTTTTACCCAG 60.599 57.895 12.47 0.00 37.50 4.45
222 223 2.329614 CGCGGTGGTTTTACCCAGG 61.330 63.158 0.00 0.00 37.50 4.45
223 224 1.228337 GCGGTGGTTTTACCCAGGT 60.228 57.895 0.00 0.00 37.50 4.00
224 225 0.824595 GCGGTGGTTTTACCCAGGTT 60.825 55.000 0.00 0.00 37.50 3.50
225 226 1.241165 CGGTGGTTTTACCCAGGTTC 58.759 55.000 0.00 0.00 37.50 3.62
226 227 1.241165 GGTGGTTTTACCCAGGTTCG 58.759 55.000 0.00 0.00 37.50 3.95
227 228 1.241165 GTGGTTTTACCCAGGTTCGG 58.759 55.000 0.00 0.00 37.50 4.30
234 235 4.101448 CCCAGGTTCGGGCCTCTG 62.101 72.222 0.84 4.09 40.07 3.35
235 236 4.101448 CCAGGTTCGGGCCTCTGG 62.101 72.222 0.84 14.48 40.46 3.86
236 237 3.322466 CAGGTTCGGGCCTCTGGT 61.322 66.667 0.84 0.00 36.58 4.00
237 238 3.322466 AGGTTCGGGCCTCTGGTG 61.322 66.667 0.84 0.00 32.39 4.17
238 239 3.319198 GGTTCGGGCCTCTGGTGA 61.319 66.667 0.84 0.00 0.00 4.02
239 240 2.266055 GTTCGGGCCTCTGGTGAG 59.734 66.667 0.84 0.00 39.92 3.51
253 254 6.996180 CTCTGGTGAGGAATAATACCCTAA 57.004 41.667 0.00 0.00 36.70 2.69
254 255 7.374975 CTCTGGTGAGGAATAATACCCTAAA 57.625 40.000 0.00 0.00 36.70 1.85
255 256 7.758820 TCTGGTGAGGAATAATACCCTAAAA 57.241 36.000 0.00 0.00 31.84 1.52
256 257 7.571025 TCTGGTGAGGAATAATACCCTAAAAC 58.429 38.462 0.00 0.00 31.84 2.43
257 258 7.183112 TCTGGTGAGGAATAATACCCTAAAACA 59.817 37.037 0.00 0.00 31.84 2.83
258 259 7.878495 TGGTGAGGAATAATACCCTAAAACAT 58.122 34.615 0.00 0.00 31.84 2.71
259 260 7.777910 TGGTGAGGAATAATACCCTAAAACATG 59.222 37.037 0.00 0.00 31.84 3.21
260 261 7.255486 GGTGAGGAATAATACCCTAAAACATGC 60.255 40.741 0.00 0.00 31.84 4.06
261 262 7.502561 GTGAGGAATAATACCCTAAAACATGCT 59.497 37.037 0.00 0.00 31.84 3.79
262 263 8.058847 TGAGGAATAATACCCTAAAACATGCTT 58.941 33.333 0.00 0.00 31.84 3.91
263 264 8.237811 AGGAATAATACCCTAAAACATGCTTG 57.762 34.615 0.00 0.00 0.00 4.01
264 265 7.839200 AGGAATAATACCCTAAAACATGCTTGT 59.161 33.333 0.00 0.00 37.82 3.16
265 266 8.135529 GGAATAATACCCTAAAACATGCTTGTC 58.864 37.037 5.61 0.00 34.06 3.18
266 267 8.588290 AATAATACCCTAAAACATGCTTGTCA 57.412 30.769 5.61 0.00 34.06 3.58
267 268 8.766994 ATAATACCCTAAAACATGCTTGTCAT 57.233 30.769 5.61 1.02 34.06 3.06
268 269 7.480760 AATACCCTAAAACATGCTTGTCATT 57.519 32.000 5.61 7.22 34.06 2.57
269 270 5.138125 ACCCTAAAACATGCTTGTCATTG 57.862 39.130 5.61 0.00 34.06 2.82
270 271 4.588528 ACCCTAAAACATGCTTGTCATTGT 59.411 37.500 5.61 0.00 34.06 2.71
271 272 5.070313 ACCCTAAAACATGCTTGTCATTGTT 59.930 36.000 5.61 0.00 34.06 2.83
272 273 6.266558 ACCCTAAAACATGCTTGTCATTGTTA 59.733 34.615 5.61 0.65 34.06 2.41
273 274 7.039082 ACCCTAAAACATGCTTGTCATTGTTAT 60.039 33.333 5.61 0.00 34.06 1.89
274 275 7.818930 CCCTAAAACATGCTTGTCATTGTTATT 59.181 33.333 5.61 0.00 34.06 1.40
275 276 8.863049 CCTAAAACATGCTTGTCATTGTTATTC 58.137 33.333 5.61 0.00 34.06 1.75
276 277 9.409312 CTAAAACATGCTTGTCATTGTTATTCA 57.591 29.630 5.61 0.00 34.06 2.57
277 278 8.836268 AAAACATGCTTGTCATTGTTATTCAT 57.164 26.923 5.61 0.00 34.06 2.57
278 279 8.836268 AAACATGCTTGTCATTGTTATTCATT 57.164 26.923 5.61 0.00 34.06 2.57
279 280 9.926158 AAACATGCTTGTCATTGTTATTCATTA 57.074 25.926 5.61 0.00 34.06 1.90
281 282 9.524106 ACATGCTTGTCATTGTTATTCATTATG 57.476 29.630 0.00 0.00 31.79 1.90
282 283 8.974408 CATGCTTGTCATTGTTATTCATTATGG 58.026 33.333 0.00 0.00 31.79 2.74
283 284 7.490840 TGCTTGTCATTGTTATTCATTATGGG 58.509 34.615 0.00 0.00 0.00 4.00
284 285 7.123997 TGCTTGTCATTGTTATTCATTATGGGT 59.876 33.333 0.00 0.00 0.00 4.51
285 286 8.629158 GCTTGTCATTGTTATTCATTATGGGTA 58.371 33.333 0.00 0.00 0.00 3.69
292 293 9.667107 ATTGTTATTCATTATGGGTATACCTCG 57.333 33.333 21.25 4.50 41.11 4.63
293 294 8.197592 TGTTATTCATTATGGGTATACCTCGT 57.802 34.615 21.25 14.41 41.11 4.18
294 295 8.092068 TGTTATTCATTATGGGTATACCTCGTG 58.908 37.037 21.25 12.75 41.11 4.35
295 296 6.681729 ATTCATTATGGGTATACCTCGTGT 57.318 37.500 21.25 6.16 41.11 4.49
296 297 5.462530 TCATTATGGGTATACCTCGTGTG 57.537 43.478 21.25 14.29 41.11 3.82
297 298 5.141910 TCATTATGGGTATACCTCGTGTGA 58.858 41.667 21.25 16.08 41.11 3.58
298 299 5.243060 TCATTATGGGTATACCTCGTGTGAG 59.757 44.000 21.25 5.80 42.18 3.51
310 311 4.258702 CTCGTGTGAGGGATTATAAGGG 57.741 50.000 0.00 0.00 38.65 3.95
311 312 3.895656 CTCGTGTGAGGGATTATAAGGGA 59.104 47.826 0.00 0.00 38.65 4.20
312 313 4.489737 TCGTGTGAGGGATTATAAGGGAT 58.510 43.478 0.00 0.00 0.00 3.85
313 314 4.905456 TCGTGTGAGGGATTATAAGGGATT 59.095 41.667 0.00 0.00 0.00 3.01
314 315 4.997395 CGTGTGAGGGATTATAAGGGATTG 59.003 45.833 0.00 0.00 0.00 2.67
315 316 5.454755 CGTGTGAGGGATTATAAGGGATTGT 60.455 44.000 0.00 0.00 0.00 2.71
316 317 5.765182 GTGTGAGGGATTATAAGGGATTGTG 59.235 44.000 0.00 0.00 0.00 3.33
317 318 5.431731 TGTGAGGGATTATAAGGGATTGTGT 59.568 40.000 0.00 0.00 0.00 3.72
318 319 5.765182 GTGAGGGATTATAAGGGATTGTGTG 59.235 44.000 0.00 0.00 0.00 3.82
319 320 5.431731 TGAGGGATTATAAGGGATTGTGTGT 59.568 40.000 0.00 0.00 0.00 3.72
320 321 6.617784 TGAGGGATTATAAGGGATTGTGTGTA 59.382 38.462 0.00 0.00 0.00 2.90
321 322 7.079451 AGGGATTATAAGGGATTGTGTGTAG 57.921 40.000 0.00 0.00 0.00 2.74
322 323 6.619852 AGGGATTATAAGGGATTGTGTGTAGT 59.380 38.462 0.00 0.00 0.00 2.73
323 324 7.128883 AGGGATTATAAGGGATTGTGTGTAGTT 59.871 37.037 0.00 0.00 0.00 2.24
324 325 7.444487 GGGATTATAAGGGATTGTGTGTAGTTC 59.556 40.741 0.00 0.00 0.00 3.01
325 326 8.211629 GGATTATAAGGGATTGTGTGTAGTTCT 58.788 37.037 0.00 0.00 0.00 3.01
328 329 4.820894 AGGGATTGTGTGTAGTTCTACC 57.179 45.455 7.40 0.00 0.00 3.18
329 330 3.194968 AGGGATTGTGTGTAGTTCTACCG 59.805 47.826 7.40 0.00 0.00 4.02
330 331 3.194116 GGGATTGTGTGTAGTTCTACCGA 59.806 47.826 7.40 0.00 0.00 4.69
331 332 4.421948 GGATTGTGTGTAGTTCTACCGAG 58.578 47.826 7.40 0.00 0.00 4.63
332 333 4.157289 GGATTGTGTGTAGTTCTACCGAGA 59.843 45.833 7.40 0.00 0.00 4.04
333 334 4.761235 TTGTGTGTAGTTCTACCGAGAG 57.239 45.455 7.40 0.00 31.77 3.20
334 335 2.486982 TGTGTGTAGTTCTACCGAGAGC 59.513 50.000 7.40 0.00 31.77 4.09
335 336 2.748532 GTGTGTAGTTCTACCGAGAGCT 59.251 50.000 7.40 0.00 44.63 4.09
336 337 2.747989 TGTGTAGTTCTACCGAGAGCTG 59.252 50.000 0.00 0.00 42.66 4.24
337 338 3.008330 GTGTAGTTCTACCGAGAGCTGA 58.992 50.000 0.00 0.00 42.66 4.26
338 339 3.064271 GTGTAGTTCTACCGAGAGCTGAG 59.936 52.174 0.00 0.00 42.66 3.35
339 340 2.500392 AGTTCTACCGAGAGCTGAGT 57.500 50.000 0.00 0.00 41.33 3.41
340 341 2.361789 AGTTCTACCGAGAGCTGAGTC 58.638 52.381 0.00 0.00 41.33 3.36
341 342 2.026636 AGTTCTACCGAGAGCTGAGTCT 60.027 50.000 0.00 0.00 41.33 3.24
342 343 3.198200 AGTTCTACCGAGAGCTGAGTCTA 59.802 47.826 0.00 0.00 41.33 2.59
343 344 4.131596 GTTCTACCGAGAGCTGAGTCTAT 58.868 47.826 0.00 0.00 31.77 1.98
344 345 3.997762 TCTACCGAGAGCTGAGTCTATC 58.002 50.000 0.00 0.00 0.00 2.08
345 346 3.644265 TCTACCGAGAGCTGAGTCTATCT 59.356 47.826 0.00 0.00 0.00 1.98
346 347 2.571212 ACCGAGAGCTGAGTCTATCTG 58.429 52.381 0.00 0.00 0.00 2.90
347 348 2.171659 ACCGAGAGCTGAGTCTATCTGA 59.828 50.000 0.00 0.00 0.00 3.27
348 349 2.807967 CCGAGAGCTGAGTCTATCTGAG 59.192 54.545 0.00 0.00 0.00 3.35
349 350 3.494223 CCGAGAGCTGAGTCTATCTGAGA 60.494 52.174 0.00 0.00 28.76 3.27
350 351 4.126437 CGAGAGCTGAGTCTATCTGAGAA 58.874 47.826 0.00 0.00 35.37 2.87
351 352 4.756642 CGAGAGCTGAGTCTATCTGAGAAT 59.243 45.833 0.00 0.00 35.37 2.40
352 353 5.931724 CGAGAGCTGAGTCTATCTGAGAATA 59.068 44.000 0.00 0.00 35.37 1.75
353 354 6.091305 CGAGAGCTGAGTCTATCTGAGAATAG 59.909 46.154 0.00 0.00 35.37 1.73
354 355 7.078249 AGAGCTGAGTCTATCTGAGAATAGA 57.922 40.000 0.00 0.00 35.37 1.98
355 356 7.693132 AGAGCTGAGTCTATCTGAGAATAGAT 58.307 38.462 0.00 0.00 39.71 1.98
356 357 7.609146 AGAGCTGAGTCTATCTGAGAATAGATG 59.391 40.741 0.00 0.00 39.71 2.90
357 358 6.660521 AGCTGAGTCTATCTGAGAATAGATGG 59.339 42.308 0.00 0.00 39.71 3.51
358 359 6.658816 GCTGAGTCTATCTGAGAATAGATGGA 59.341 42.308 0.00 0.00 40.84 3.41
359 360 7.176515 GCTGAGTCTATCTGAGAATAGATGGAA 59.823 40.741 3.83 0.00 43.43 3.53
360 361 9.076781 CTGAGTCTATCTGAGAATAGATGGAAA 57.923 37.037 3.83 0.00 43.43 3.13
361 362 9.599056 TGAGTCTATCTGAGAATAGATGGAAAT 57.401 33.333 3.83 0.00 43.43 2.17
362 363 9.859427 GAGTCTATCTGAGAATAGATGGAAATG 57.141 37.037 3.83 0.00 43.43 2.32
363 364 9.599056 AGTCTATCTGAGAATAGATGGAAATGA 57.401 33.333 3.83 0.00 43.43 2.57
364 365 9.859427 GTCTATCTGAGAATAGATGGAAATGAG 57.141 37.037 3.83 0.00 43.43 2.90
365 366 9.819754 TCTATCTGAGAATAGATGGAAATGAGA 57.180 33.333 0.00 0.00 40.37 3.27
367 368 6.757237 TCTGAGAATAGATGGAAATGAGAGC 58.243 40.000 0.00 0.00 0.00 4.09
368 369 5.862845 TGAGAATAGATGGAAATGAGAGCC 58.137 41.667 0.00 0.00 0.00 4.70
369 370 5.221803 TGAGAATAGATGGAAATGAGAGCCC 60.222 44.000 0.00 0.00 0.00 5.19
370 371 4.042684 AGAATAGATGGAAATGAGAGCCCC 59.957 45.833 0.00 0.00 0.00 5.80
371 372 1.904440 AGATGGAAATGAGAGCCCCT 58.096 50.000 0.00 0.00 0.00 4.79
372 373 1.493871 AGATGGAAATGAGAGCCCCTG 59.506 52.381 0.00 0.00 0.00 4.45
373 374 0.106318 ATGGAAATGAGAGCCCCTGC 60.106 55.000 0.00 0.00 37.95 4.85
374 375 1.454663 GGAAATGAGAGCCCCTGCC 60.455 63.158 0.00 0.00 38.69 4.85
375 376 1.611965 GAAATGAGAGCCCCTGCCT 59.388 57.895 0.00 0.00 38.69 4.75
376 377 0.465278 GAAATGAGAGCCCCTGCCTC 60.465 60.000 0.00 0.00 38.69 4.70
377 378 1.931007 AAATGAGAGCCCCTGCCTCC 61.931 60.000 0.00 0.00 38.69 4.30
382 383 4.038804 AGCCCCTGCCTCCCCTTA 62.039 66.667 0.00 0.00 38.69 2.69
383 384 2.778717 GCCCCTGCCTCCCCTTAT 60.779 66.667 0.00 0.00 0.00 1.73
384 385 1.463410 GCCCCTGCCTCCCCTTATA 60.463 63.158 0.00 0.00 0.00 0.98
385 386 0.846870 GCCCCTGCCTCCCCTTATAT 60.847 60.000 0.00 0.00 0.00 0.86
386 387 0.995024 CCCCTGCCTCCCCTTATATG 59.005 60.000 0.00 0.00 0.00 1.78
387 388 0.995024 CCCTGCCTCCCCTTATATGG 59.005 60.000 0.00 0.00 0.00 2.74
388 389 0.995024 CCTGCCTCCCCTTATATGGG 59.005 60.000 15.48 15.48 46.68 4.00
389 390 0.329596 CTGCCTCCCCTTATATGGGC 59.670 60.000 16.76 7.28 45.78 5.36
390 391 0.103930 TGCCTCCCCTTATATGGGCT 60.104 55.000 16.76 0.00 45.78 5.19
391 392 0.329596 GCCTCCCCTTATATGGGCTG 59.670 60.000 16.76 11.25 45.78 4.85
392 393 1.747444 CCTCCCCTTATATGGGCTGT 58.253 55.000 16.76 0.00 45.78 4.40
393 394 2.065799 CCTCCCCTTATATGGGCTGTT 58.934 52.381 16.76 0.00 45.78 3.16
394 395 2.447047 CCTCCCCTTATATGGGCTGTTT 59.553 50.000 16.76 0.00 45.78 2.83
395 396 3.490348 CTCCCCTTATATGGGCTGTTTG 58.510 50.000 16.76 4.07 45.78 2.93
396 397 3.127250 TCCCCTTATATGGGCTGTTTGA 58.873 45.455 16.76 6.17 45.78 2.69
397 398 3.726859 TCCCCTTATATGGGCTGTTTGAT 59.273 43.478 16.76 0.00 45.78 2.57
398 399 4.082125 CCCCTTATATGGGCTGTTTGATC 58.918 47.826 16.76 0.00 45.78 2.92
399 400 4.202609 CCCCTTATATGGGCTGTTTGATCT 60.203 45.833 16.76 0.00 45.78 2.75
400 401 5.014123 CCCCTTATATGGGCTGTTTGATCTA 59.986 44.000 16.76 0.00 45.78 1.98
401 402 6.176183 CCCTTATATGGGCTGTTTGATCTAG 58.824 44.000 10.63 0.00 40.84 2.43
402 403 6.176183 CCTTATATGGGCTGTTTGATCTAGG 58.824 44.000 0.00 0.00 0.00 3.02
403 404 2.355010 ATGGGCTGTTTGATCTAGGC 57.645 50.000 0.00 0.00 36.39 3.93
405 406 0.815615 GGGCTGTTTGATCTAGGCCG 60.816 60.000 13.50 0.00 45.45 6.13
406 407 1.440145 GGCTGTTTGATCTAGGCCGC 61.440 60.000 0.00 0.00 0.00 6.53
407 408 1.440145 GCTGTTTGATCTAGGCCGCC 61.440 60.000 0.00 0.00 0.00 6.13
408 409 1.153449 TGTTTGATCTAGGCCGCCG 60.153 57.895 3.05 0.00 0.00 6.46
409 410 2.203015 TTTGATCTAGGCCGCCGC 60.203 61.111 3.05 0.00 0.00 6.53
410 411 3.025189 TTTGATCTAGGCCGCCGCA 62.025 57.895 3.05 0.00 36.38 5.69
411 412 2.324014 TTTGATCTAGGCCGCCGCAT 62.324 55.000 3.05 0.00 36.38 4.73
412 413 2.433318 GATCTAGGCCGCCGCATC 60.433 66.667 3.05 3.26 36.38 3.91
413 414 3.226429 GATCTAGGCCGCCGCATCA 62.226 63.158 3.05 0.00 36.38 3.07
414 415 2.513026 GATCTAGGCCGCCGCATCAT 62.513 60.000 3.05 0.00 36.38 2.45
415 416 1.257750 ATCTAGGCCGCCGCATCATA 61.258 55.000 3.05 0.00 36.38 2.15
416 417 1.446792 CTAGGCCGCCGCATCATAG 60.447 63.158 3.05 0.00 36.38 2.23
417 418 1.877576 CTAGGCCGCCGCATCATAGA 61.878 60.000 3.05 0.00 36.38 1.98
418 419 2.154798 TAGGCCGCCGCATCATAGAC 62.155 60.000 3.05 0.00 36.38 2.59
419 420 2.029666 GCCGCCGCATCATAGACT 59.970 61.111 0.00 0.00 34.03 3.24
420 421 1.595382 GCCGCCGCATCATAGACTT 60.595 57.895 0.00 0.00 34.03 3.01
421 422 1.835483 GCCGCCGCATCATAGACTTG 61.835 60.000 0.00 0.00 34.03 3.16
422 423 1.224069 CCGCCGCATCATAGACTTGG 61.224 60.000 0.00 0.00 0.00 3.61
423 424 0.249447 CGCCGCATCATAGACTTGGA 60.249 55.000 0.00 0.00 0.00 3.53
424 425 1.506493 GCCGCATCATAGACTTGGAG 58.494 55.000 0.00 0.00 0.00 3.86
425 426 1.506493 CCGCATCATAGACTTGGAGC 58.494 55.000 0.00 0.00 0.00 4.70
426 427 1.506493 CGCATCATAGACTTGGAGCC 58.494 55.000 0.00 0.00 0.00 4.70
427 428 1.875576 CGCATCATAGACTTGGAGCCC 60.876 57.143 0.00 0.00 0.00 5.19
428 429 1.141657 GCATCATAGACTTGGAGCCCA 59.858 52.381 0.00 0.00 0.00 5.36
429 430 2.421952 GCATCATAGACTTGGAGCCCAA 60.422 50.000 6.50 6.50 41.69 4.12
437 438 1.691219 TTGGAGCCCAAGATGACCC 59.309 57.895 2.84 0.00 38.75 4.46
438 439 1.139498 TTGGAGCCCAAGATGACCCA 61.139 55.000 2.84 0.00 38.75 4.51
439 440 1.225704 GGAGCCCAAGATGACCCAG 59.774 63.158 0.00 0.00 0.00 4.45
440 441 1.274703 GGAGCCCAAGATGACCCAGA 61.275 60.000 0.00 0.00 0.00 3.86
441 442 0.179936 GAGCCCAAGATGACCCAGAG 59.820 60.000 0.00 0.00 0.00 3.35
442 443 0.252881 AGCCCAAGATGACCCAGAGA 60.253 55.000 0.00 0.00 0.00 3.10
443 444 0.107459 GCCCAAGATGACCCAGAGAC 60.107 60.000 0.00 0.00 0.00 3.36
444 445 1.577736 CCCAAGATGACCCAGAGACT 58.422 55.000 0.00 0.00 0.00 3.24
445 446 1.484240 CCCAAGATGACCCAGAGACTC 59.516 57.143 0.00 0.00 0.00 3.36
446 447 2.465813 CCAAGATGACCCAGAGACTCT 58.534 52.381 0.00 0.00 0.00 3.24
447 448 2.836981 CCAAGATGACCCAGAGACTCTT 59.163 50.000 0.98 0.00 0.00 2.85
448 449 4.026744 CCAAGATGACCCAGAGACTCTTA 58.973 47.826 0.98 0.00 0.00 2.10
449 450 4.653341 CCAAGATGACCCAGAGACTCTTAT 59.347 45.833 0.98 0.00 0.00 1.73
450 451 5.221422 CCAAGATGACCCAGAGACTCTTATC 60.221 48.000 0.98 1.53 0.00 1.75
451 452 5.402054 AGATGACCCAGAGACTCTTATCT 57.598 43.478 0.98 4.97 0.00 1.98
452 453 5.385198 AGATGACCCAGAGACTCTTATCTC 58.615 45.833 0.98 0.00 44.76 2.75
462 463 6.391227 GAGACTCTTATCTCTTTCTCCAGG 57.609 45.833 0.00 0.00 41.72 4.45
463 464 4.649218 AGACTCTTATCTCTTTCTCCAGGC 59.351 45.833 0.00 0.00 0.00 4.85
464 465 4.619679 ACTCTTATCTCTTTCTCCAGGCT 58.380 43.478 0.00 0.00 0.00 4.58
465 466 4.649218 ACTCTTATCTCTTTCTCCAGGCTC 59.351 45.833 0.00 0.00 0.00 4.70
466 467 3.964031 TCTTATCTCTTTCTCCAGGCTCC 59.036 47.826 0.00 0.00 0.00 4.70
467 468 2.566708 ATCTCTTTCTCCAGGCTCCT 57.433 50.000 0.00 0.00 0.00 3.69
468 469 2.334006 TCTCTTTCTCCAGGCTCCTT 57.666 50.000 0.00 0.00 0.00 3.36
469 470 2.183679 TCTCTTTCTCCAGGCTCCTTC 58.816 52.381 0.00 0.00 0.00 3.46
470 471 1.209261 CTCTTTCTCCAGGCTCCTTCC 59.791 57.143 0.00 0.00 0.00 3.46
471 472 1.203364 TCTTTCTCCAGGCTCCTTCCT 60.203 52.381 0.00 0.00 36.78 3.36
472 473 2.044492 TCTTTCTCCAGGCTCCTTCCTA 59.956 50.000 0.00 0.00 33.95 2.94
473 474 2.877154 TTCTCCAGGCTCCTTCCTAT 57.123 50.000 0.00 0.00 33.95 2.57
474 475 2.390225 TCTCCAGGCTCCTTCCTATC 57.610 55.000 0.00 0.00 33.95 2.08
475 476 0.965439 CTCCAGGCTCCTTCCTATCG 59.035 60.000 0.00 0.00 33.95 2.92
476 477 0.261991 TCCAGGCTCCTTCCTATCGT 59.738 55.000 0.00 0.00 33.95 3.73
477 478 0.390860 CCAGGCTCCTTCCTATCGTG 59.609 60.000 0.00 0.00 33.95 4.35
478 479 1.403814 CAGGCTCCTTCCTATCGTGA 58.596 55.000 0.00 0.00 33.95 4.35
479 480 1.339610 CAGGCTCCTTCCTATCGTGAG 59.660 57.143 0.00 0.00 33.95 3.51
480 481 0.676736 GGCTCCTTCCTATCGTGAGG 59.323 60.000 0.00 0.00 38.03 3.86
481 482 1.404843 GCTCCTTCCTATCGTGAGGT 58.595 55.000 5.46 0.00 37.88 3.85
482 483 2.584236 GCTCCTTCCTATCGTGAGGTA 58.416 52.381 5.46 0.00 37.88 3.08
483 484 2.293955 GCTCCTTCCTATCGTGAGGTAC 59.706 54.545 5.46 0.00 37.88 3.34
485 486 4.208746 CTCCTTCCTATCGTGAGGTACTT 58.791 47.826 5.46 0.00 41.55 2.24
486 487 3.952323 TCCTTCCTATCGTGAGGTACTTG 59.048 47.826 5.46 0.00 41.55 3.16
487 488 3.068307 CCTTCCTATCGTGAGGTACTTGG 59.932 52.174 5.46 0.00 41.55 3.61
488 489 3.377253 TCCTATCGTGAGGTACTTGGT 57.623 47.619 5.46 0.00 41.55 3.67
489 490 3.705051 TCCTATCGTGAGGTACTTGGTT 58.295 45.455 5.46 0.00 41.55 3.67
490 491 4.858850 TCCTATCGTGAGGTACTTGGTTA 58.141 43.478 5.46 0.00 41.55 2.85
491 492 4.885907 TCCTATCGTGAGGTACTTGGTTAG 59.114 45.833 5.46 0.00 41.55 2.34
492 493 3.521947 ATCGTGAGGTACTTGGTTAGC 57.478 47.619 0.00 0.00 41.55 3.09
493 494 1.547372 TCGTGAGGTACTTGGTTAGCC 59.453 52.381 0.00 0.00 41.55 3.93
494 495 1.549170 CGTGAGGTACTTGGTTAGCCT 59.451 52.381 0.00 0.00 41.55 4.58
495 496 2.416972 CGTGAGGTACTTGGTTAGCCTC 60.417 54.545 0.00 0.00 41.55 4.70
496 497 2.093606 GTGAGGTACTTGGTTAGCCTCC 60.094 54.545 6.46 0.00 43.64 4.30
497 498 2.225547 TGAGGTACTTGGTTAGCCTCCT 60.226 50.000 6.46 0.00 43.64 3.69
498 499 2.168728 GAGGTACTTGGTTAGCCTCCTG 59.831 54.545 0.00 0.00 41.55 3.86
499 500 1.209747 GGTACTTGGTTAGCCTCCTGG 59.790 57.143 0.00 0.00 35.27 4.45
500 501 1.209747 GTACTTGGTTAGCCTCCTGGG 59.790 57.143 0.00 0.00 35.27 4.45
509 510 4.120755 CCTCCTGGGCCCTCAAGC 62.121 72.222 25.70 0.00 0.00 4.01
510 511 3.333219 CTCCTGGGCCCTCAAGCA 61.333 66.667 25.70 0.00 0.00 3.91
511 512 3.333219 TCCTGGGCCCTCAAGCAG 61.333 66.667 25.70 10.79 0.00 4.24
512 513 4.437587 CCTGGGCCCTCAAGCAGG 62.438 72.222 25.70 16.73 43.01 4.85
531 532 3.085947 CTGCAGCCTGGCTCCCTA 61.086 66.667 20.49 4.39 36.40 3.53
532 533 2.367377 TGCAGCCTGGCTCCCTAT 60.367 61.111 20.49 0.00 36.40 2.57
533 534 2.112718 GCAGCCTGGCTCCCTATG 59.887 66.667 20.49 8.71 36.40 2.23
534 535 2.834688 CAGCCTGGCTCCCTATGG 59.165 66.667 20.49 1.27 36.40 2.74
535 536 2.449322 AGCCTGGCTCCCTATGGG 60.449 66.667 17.22 0.00 46.11 4.00
536 537 2.774351 GCCTGGCTCCCTATGGGT 60.774 66.667 12.43 0.00 44.74 4.51
537 538 3.125376 GCCTGGCTCCCTATGGGTG 62.125 68.421 12.43 1.43 44.74 4.61
538 539 1.384502 CCTGGCTCCCTATGGGTGA 60.385 63.158 8.69 0.00 44.74 4.02
539 540 1.414061 CCTGGCTCCCTATGGGTGAG 61.414 65.000 8.69 8.62 44.74 3.51
540 541 2.049627 CTGGCTCCCTATGGGTGAGC 62.050 65.000 22.29 22.29 46.08 4.26
541 542 2.832498 GCTCCCTATGGGTGAGCC 59.168 66.667 20.75 0.00 44.74 4.70
542 543 2.072487 GCTCCCTATGGGTGAGCCA 61.072 63.158 20.75 5.57 44.74 4.75
543 544 1.832912 CTCCCTATGGGTGAGCCAC 59.167 63.158 5.09 0.00 44.74 5.01
1011 1041 0.668535 CGATCGAGATGTACCAGGCA 59.331 55.000 10.26 0.00 0.00 4.75
1601 1632 3.376859 TGCTCGATCTTCAGTCTCTCTTC 59.623 47.826 0.00 0.00 0.00 2.87
1662 1693 9.755122 AGTTAGGCCTAAATTCTTTTGATTACT 57.245 29.630 26.78 12.03 0.00 2.24
1940 1976 6.682861 GCTGATTTCCCTCTCTCTTCTTCTAC 60.683 46.154 0.00 0.00 0.00 2.59
2034 2072 1.534163 GGGTTTGTACTGAGCGGTTTC 59.466 52.381 0.00 0.00 0.00 2.78
2130 2169 3.631686 TCCCCGAACTTGCATGATTTATG 59.368 43.478 6.60 0.00 39.88 1.90
2145 2184 9.793252 GCATGATTTATGTAGTTGAACTGAATT 57.207 29.630 8.33 0.00 39.08 2.17
2266 2306 8.335356 GGGTTTTATTTCTGTTTGAGCTTTTTC 58.665 33.333 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.276461 TCGGATGCATCTACATAACTTGT 57.724 39.130 25.28 0.00 42.62 3.16
6 7 5.928264 TGATCGGATGCATCTACATAACTTG 59.072 40.000 25.28 4.23 0.00 3.16
7 8 5.928839 GTGATCGGATGCATCTACATAACTT 59.071 40.000 25.28 1.84 0.00 2.66
8 9 5.244851 AGTGATCGGATGCATCTACATAACT 59.755 40.000 25.28 18.16 0.00 2.24
9 10 5.473931 AGTGATCGGATGCATCTACATAAC 58.526 41.667 25.28 16.51 0.00 1.89
10 11 5.619981 CGAGTGATCGGATGCATCTACATAA 60.620 44.000 25.28 6.37 0.00 1.90
11 12 4.142600 CGAGTGATCGGATGCATCTACATA 60.143 45.833 25.28 7.87 0.00 2.29
12 13 3.366781 CGAGTGATCGGATGCATCTACAT 60.367 47.826 25.28 14.56 0.00 2.29
13 14 2.030805 CGAGTGATCGGATGCATCTACA 60.031 50.000 25.28 16.38 0.00 2.74
14 15 2.030717 ACGAGTGATCGGATGCATCTAC 60.031 50.000 25.28 15.76 37.45 2.59
15 16 2.230660 ACGAGTGATCGGATGCATCTA 58.769 47.619 25.28 14.70 37.45 1.98
16 17 1.035923 ACGAGTGATCGGATGCATCT 58.964 50.000 25.28 6.65 37.45 2.90
17 18 1.524355 CAACGAGTGATCGGATGCATC 59.476 52.381 18.81 18.81 37.45 3.91
18 19 1.575244 CAACGAGTGATCGGATGCAT 58.425 50.000 0.00 0.00 37.45 3.96
19 20 1.083806 GCAACGAGTGATCGGATGCA 61.084 55.000 19.08 0.00 43.99 3.96
20 21 0.807667 AGCAACGAGTGATCGGATGC 60.808 55.000 17.37 17.37 44.49 3.91
21 22 2.033424 TCTAGCAACGAGTGATCGGATG 59.967 50.000 0.00 2.53 37.45 3.51
22 23 2.298610 TCTAGCAACGAGTGATCGGAT 58.701 47.619 2.46 0.00 37.45 4.18
23 24 1.746470 TCTAGCAACGAGTGATCGGA 58.254 50.000 2.46 0.00 37.45 4.55
24 25 2.033424 TCATCTAGCAACGAGTGATCGG 59.967 50.000 2.46 0.00 37.45 4.18
25 26 3.340337 TCATCTAGCAACGAGTGATCG 57.660 47.619 0.00 0.00 39.31 3.69
26 27 4.677584 AGTTCATCTAGCAACGAGTGATC 58.322 43.478 0.00 0.00 0.00 2.92
27 28 4.158579 TGAGTTCATCTAGCAACGAGTGAT 59.841 41.667 0.00 0.00 0.00 3.06
28 29 3.506067 TGAGTTCATCTAGCAACGAGTGA 59.494 43.478 0.00 0.00 0.00 3.41
29 30 3.838120 TGAGTTCATCTAGCAACGAGTG 58.162 45.455 0.00 0.00 0.00 3.51
30 31 4.727507 ATGAGTTCATCTAGCAACGAGT 57.272 40.909 0.00 0.00 28.78 4.18
31 32 6.066054 TCTATGAGTTCATCTAGCAACGAG 57.934 41.667 0.00 0.00 37.76 4.18
32 33 6.442112 CATCTATGAGTTCATCTAGCAACGA 58.558 40.000 0.00 0.00 37.76 3.85
33 34 5.632764 CCATCTATGAGTTCATCTAGCAACG 59.367 44.000 0.00 0.00 37.76 4.10
34 35 6.644592 GTCCATCTATGAGTTCATCTAGCAAC 59.355 42.308 0.00 0.00 37.76 4.17
35 36 6.239430 GGTCCATCTATGAGTTCATCTAGCAA 60.239 42.308 0.00 0.00 37.76 3.91
36 37 5.244851 GGTCCATCTATGAGTTCATCTAGCA 59.755 44.000 0.00 0.00 37.76 3.49
37 38 5.480073 AGGTCCATCTATGAGTTCATCTAGC 59.520 44.000 0.00 0.00 37.76 3.42
38 39 7.377398 CAAGGTCCATCTATGAGTTCATCTAG 58.623 42.308 0.00 0.00 37.76 2.43
39 40 6.268617 CCAAGGTCCATCTATGAGTTCATCTA 59.731 42.308 0.00 0.00 37.76 1.98
40 41 5.071519 CCAAGGTCCATCTATGAGTTCATCT 59.928 44.000 0.00 0.00 37.76 2.90
41 42 5.163258 ACCAAGGTCCATCTATGAGTTCATC 60.163 44.000 0.00 0.00 37.76 2.92
42 43 4.723789 ACCAAGGTCCATCTATGAGTTCAT 59.276 41.667 0.00 0.00 40.22 2.57
43 44 4.080919 CACCAAGGTCCATCTATGAGTTCA 60.081 45.833 0.00 0.00 0.00 3.18
44 45 4.162320 TCACCAAGGTCCATCTATGAGTTC 59.838 45.833 0.00 0.00 0.00 3.01
45 46 4.104086 TCACCAAGGTCCATCTATGAGTT 58.896 43.478 0.00 0.00 0.00 3.01
46 47 3.724478 TCACCAAGGTCCATCTATGAGT 58.276 45.455 0.00 0.00 0.00 3.41
47 48 4.760530 TTCACCAAGGTCCATCTATGAG 57.239 45.455 0.00 0.00 0.00 2.90
48 49 4.324254 GGTTTCACCAAGGTCCATCTATGA 60.324 45.833 0.00 0.00 38.42 2.15
49 50 3.947834 GGTTTCACCAAGGTCCATCTATG 59.052 47.826 0.00 0.00 38.42 2.23
50 51 3.370527 CGGTTTCACCAAGGTCCATCTAT 60.371 47.826 0.00 0.00 38.47 1.98
51 52 2.027561 CGGTTTCACCAAGGTCCATCTA 60.028 50.000 0.00 0.00 38.47 1.98
52 53 1.271379 CGGTTTCACCAAGGTCCATCT 60.271 52.381 0.00 0.00 38.47 2.90
53 54 1.165270 CGGTTTCACCAAGGTCCATC 58.835 55.000 0.00 0.00 38.47 3.51
54 55 0.476771 ACGGTTTCACCAAGGTCCAT 59.523 50.000 0.00 0.00 38.47 3.41
55 56 1.071071 CTACGGTTTCACCAAGGTCCA 59.929 52.381 0.00 0.00 38.47 4.02
56 57 1.609841 CCTACGGTTTCACCAAGGTCC 60.610 57.143 0.00 0.00 38.47 4.46
57 58 1.345415 TCCTACGGTTTCACCAAGGTC 59.655 52.381 9.93 0.00 40.31 3.85
58 59 1.426751 TCCTACGGTTTCACCAAGGT 58.573 50.000 9.93 0.00 40.31 3.50
59 60 2.554370 TTCCTACGGTTTCACCAAGG 57.446 50.000 5.33 5.33 40.60 3.61
60 61 5.447624 AAATTTCCTACGGTTTCACCAAG 57.552 39.130 0.00 0.00 38.47 3.61
61 62 5.855740 AAAATTTCCTACGGTTTCACCAA 57.144 34.783 0.00 0.00 38.47 3.67
62 63 5.855740 AAAAATTTCCTACGGTTTCACCA 57.144 34.783 0.00 0.00 38.47 4.17
81 82 4.637977 GGGGAACATTGCAGAAAACAAAAA 59.362 37.500 0.00 0.00 0.00 1.94
82 83 4.195416 GGGGAACATTGCAGAAAACAAAA 58.805 39.130 0.00 0.00 0.00 2.44
83 84 3.198635 TGGGGAACATTGCAGAAAACAAA 59.801 39.130 0.00 0.00 0.00 2.83
84 85 2.768527 TGGGGAACATTGCAGAAAACAA 59.231 40.909 0.00 0.00 0.00 2.83
85 86 2.392662 TGGGGAACATTGCAGAAAACA 58.607 42.857 0.00 0.00 0.00 2.83
86 87 3.130633 GTTGGGGAACATTGCAGAAAAC 58.869 45.455 0.00 0.00 0.00 2.43
87 88 2.768527 TGTTGGGGAACATTGCAGAAAA 59.231 40.909 0.00 0.00 0.00 2.29
88 89 2.392662 TGTTGGGGAACATTGCAGAAA 58.607 42.857 0.00 0.00 0.00 2.52
89 90 2.079170 TGTTGGGGAACATTGCAGAA 57.921 45.000 0.00 0.00 0.00 3.02
90 91 2.170166 GATGTTGGGGAACATTGCAGA 58.830 47.619 2.13 0.00 42.92 4.26
91 92 2.094390 CAGATGTTGGGGAACATTGCAG 60.094 50.000 2.13 0.00 42.92 4.41
92 93 1.894466 CAGATGTTGGGGAACATTGCA 59.106 47.619 2.13 0.00 42.92 4.08
93 94 1.205417 CCAGATGTTGGGGAACATTGC 59.795 52.381 2.13 0.00 42.92 3.56
104 105 1.915614 GCGTCAGGCACCAGATGTTG 61.916 60.000 3.58 0.00 42.87 3.33
105 106 1.672356 GCGTCAGGCACCAGATGTT 60.672 57.895 3.58 0.00 42.87 2.71
106 107 2.046892 GCGTCAGGCACCAGATGT 60.047 61.111 3.58 0.00 42.87 3.06
107 108 3.190849 CGCGTCAGGCACCAGATG 61.191 66.667 0.00 0.00 43.84 2.90
114 115 3.523087 TTAGTTGGCGCGTCAGGCA 62.523 57.895 15.27 0.00 43.84 4.75
115 116 2.740826 TTAGTTGGCGCGTCAGGC 60.741 61.111 15.27 11.54 38.69 4.85
116 117 1.019278 ATGTTAGTTGGCGCGTCAGG 61.019 55.000 15.27 0.00 0.00 3.86
117 118 0.796312 AATGTTAGTTGGCGCGTCAG 59.204 50.000 15.27 0.00 0.00 3.51
118 119 0.515127 CAATGTTAGTTGGCGCGTCA 59.485 50.000 10.57 10.57 0.00 4.35
119 120 0.793104 GCAATGTTAGTTGGCGCGTC 60.793 55.000 2.29 2.29 0.00 5.19
120 121 1.209127 GCAATGTTAGTTGGCGCGT 59.791 52.632 8.43 0.00 0.00 6.01
121 122 1.863012 CGCAATGTTAGTTGGCGCG 60.863 57.895 0.00 0.00 34.89 6.86
122 123 1.514014 CCGCAATGTTAGTTGGCGC 60.514 57.895 0.00 0.00 31.80 6.53
123 124 0.519519 TTCCGCAATGTTAGTTGGCG 59.480 50.000 0.00 0.00 0.00 5.69
124 125 2.715737 TTTCCGCAATGTTAGTTGGC 57.284 45.000 0.00 0.00 0.00 4.52
125 126 3.313690 GGTTTTCCGCAATGTTAGTTGG 58.686 45.455 0.00 0.00 0.00 3.77
139 140 1.622312 AGAGGGTACTGACGGTTTTCC 59.378 52.381 0.00 0.00 0.00 3.13
140 141 2.036862 ACAGAGGGTACTGACGGTTTTC 59.963 50.000 0.00 0.00 40.63 2.29
141 142 2.044758 ACAGAGGGTACTGACGGTTTT 58.955 47.619 0.00 0.00 40.63 2.43
142 143 1.713297 ACAGAGGGTACTGACGGTTT 58.287 50.000 0.00 0.00 40.63 3.27
143 144 1.343465 CAACAGAGGGTACTGACGGTT 59.657 52.381 0.00 0.00 40.63 4.44
144 145 0.966920 CAACAGAGGGTACTGACGGT 59.033 55.000 0.00 0.00 40.63 4.83
145 146 0.966920 ACAACAGAGGGTACTGACGG 59.033 55.000 0.00 0.00 40.63 4.79
146 147 1.340248 ACACAACAGAGGGTACTGACG 59.660 52.381 0.00 0.00 40.63 4.35
147 148 3.470645 AACACAACAGAGGGTACTGAC 57.529 47.619 0.00 0.00 40.63 3.51
148 149 4.220724 AGTAACACAACAGAGGGTACTGA 58.779 43.478 0.00 0.00 40.63 3.41
149 150 4.602340 AGTAACACAACAGAGGGTACTG 57.398 45.455 0.00 0.00 42.78 2.74
150 151 4.220163 GCTAGTAACACAACAGAGGGTACT 59.780 45.833 0.00 0.00 0.00 2.73
151 152 4.492611 GCTAGTAACACAACAGAGGGTAC 58.507 47.826 0.00 0.00 0.00 3.34
152 153 3.192001 CGCTAGTAACACAACAGAGGGTA 59.808 47.826 0.00 0.00 0.00 3.69
153 154 2.029290 CGCTAGTAACACAACAGAGGGT 60.029 50.000 0.00 0.00 0.00 4.34
154 155 2.029290 ACGCTAGTAACACAACAGAGGG 60.029 50.000 0.00 0.00 0.00 4.30
155 156 2.987149 CACGCTAGTAACACAACAGAGG 59.013 50.000 0.00 0.00 0.00 3.69
156 157 3.425525 CACACGCTAGTAACACAACAGAG 59.574 47.826 0.00 0.00 0.00 3.35
157 158 3.377439 CACACGCTAGTAACACAACAGA 58.623 45.455 0.00 0.00 0.00 3.41
158 159 2.475111 CCACACGCTAGTAACACAACAG 59.525 50.000 0.00 0.00 0.00 3.16
159 160 2.159071 ACCACACGCTAGTAACACAACA 60.159 45.455 0.00 0.00 0.00 3.33
160 161 2.476821 ACCACACGCTAGTAACACAAC 58.523 47.619 0.00 0.00 0.00 3.32
161 162 2.894763 ACCACACGCTAGTAACACAA 57.105 45.000 0.00 0.00 0.00 3.33
162 163 2.894763 AACCACACGCTAGTAACACA 57.105 45.000 0.00 0.00 0.00 3.72
163 164 4.164822 TCTAACCACACGCTAGTAACAC 57.835 45.455 0.00 0.00 0.00 3.32
164 165 4.279169 ACTTCTAACCACACGCTAGTAACA 59.721 41.667 0.00 0.00 0.00 2.41
165 166 4.802999 ACTTCTAACCACACGCTAGTAAC 58.197 43.478 0.00 0.00 0.00 2.50
166 167 4.763793 AGACTTCTAACCACACGCTAGTAA 59.236 41.667 0.00 0.00 0.00 2.24
167 168 4.330250 AGACTTCTAACCACACGCTAGTA 58.670 43.478 0.00 0.00 0.00 1.82
168 169 3.155501 AGACTTCTAACCACACGCTAGT 58.844 45.455 0.00 0.00 0.00 2.57
169 170 3.851976 AGACTTCTAACCACACGCTAG 57.148 47.619 0.00 0.00 0.00 3.42
170 171 5.710513 TTAAGACTTCTAACCACACGCTA 57.289 39.130 0.00 0.00 0.00 4.26
171 172 4.595762 TTAAGACTTCTAACCACACGCT 57.404 40.909 0.00 0.00 0.00 5.07
172 173 5.407387 TGATTTAAGACTTCTAACCACACGC 59.593 40.000 0.00 0.00 0.00 5.34
173 174 6.866770 TCTGATTTAAGACTTCTAACCACACG 59.133 38.462 0.00 0.00 0.00 4.49
174 175 7.332182 CCTCTGATTTAAGACTTCTAACCACAC 59.668 40.741 0.00 0.00 0.00 3.82
175 176 7.016268 ACCTCTGATTTAAGACTTCTAACCACA 59.984 37.037 0.00 0.00 0.00 4.17
176 177 7.387643 ACCTCTGATTTAAGACTTCTAACCAC 58.612 38.462 0.00 0.00 0.00 4.16
177 178 7.234782 TGACCTCTGATTTAAGACTTCTAACCA 59.765 37.037 0.00 0.00 0.00 3.67
178 179 7.546316 GTGACCTCTGATTTAAGACTTCTAACC 59.454 40.741 0.00 0.00 0.00 2.85
179 180 7.273815 CGTGACCTCTGATTTAAGACTTCTAAC 59.726 40.741 0.00 0.00 0.00 2.34
180 181 7.313646 CGTGACCTCTGATTTAAGACTTCTAA 58.686 38.462 0.00 0.00 0.00 2.10
181 182 6.625300 GCGTGACCTCTGATTTAAGACTTCTA 60.625 42.308 0.00 0.00 0.00 2.10
182 183 5.715070 CGTGACCTCTGATTTAAGACTTCT 58.285 41.667 0.00 0.00 0.00 2.85
183 184 4.327627 GCGTGACCTCTGATTTAAGACTTC 59.672 45.833 0.00 0.00 0.00 3.01
184 185 4.246458 GCGTGACCTCTGATTTAAGACTT 58.754 43.478 0.00 0.00 0.00 3.01
185 186 3.673594 CGCGTGACCTCTGATTTAAGACT 60.674 47.826 0.00 0.00 0.00 3.24
186 187 2.599082 CGCGTGACCTCTGATTTAAGAC 59.401 50.000 0.00 0.00 0.00 3.01
187 188 2.416836 CCGCGTGACCTCTGATTTAAGA 60.417 50.000 4.92 0.00 0.00 2.10
188 189 1.927174 CCGCGTGACCTCTGATTTAAG 59.073 52.381 4.92 0.00 0.00 1.85
189 190 1.274167 ACCGCGTGACCTCTGATTTAA 59.726 47.619 4.92 0.00 0.00 1.52
190 191 0.892755 ACCGCGTGACCTCTGATTTA 59.107 50.000 4.92 0.00 0.00 1.40
191 192 0.670546 CACCGCGTGACCTCTGATTT 60.671 55.000 4.92 0.00 35.23 2.17
192 193 1.079819 CACCGCGTGACCTCTGATT 60.080 57.895 4.92 0.00 35.23 2.57
193 194 2.573869 CACCGCGTGACCTCTGAT 59.426 61.111 4.92 0.00 35.23 2.90
194 195 3.680786 CCACCGCGTGACCTCTGA 61.681 66.667 4.92 0.00 35.23 3.27
195 196 2.989055 AAACCACCGCGTGACCTCTG 62.989 60.000 4.92 0.00 35.23 3.35
196 197 2.319890 AAAACCACCGCGTGACCTCT 62.320 55.000 4.92 0.00 35.23 3.69
197 198 0.600782 TAAAACCACCGCGTGACCTC 60.601 55.000 4.92 0.00 35.23 3.85
198 199 0.881600 GTAAAACCACCGCGTGACCT 60.882 55.000 4.92 0.00 35.23 3.85
199 200 1.570967 GTAAAACCACCGCGTGACC 59.429 57.895 4.92 0.00 35.23 4.02
200 201 1.570967 GGTAAAACCACCGCGTGAC 59.429 57.895 4.92 0.00 38.42 3.67
201 202 1.597578 GGGTAAAACCACCGCGTGA 60.598 57.895 4.92 0.00 41.02 4.35
202 203 1.847890 CTGGGTAAAACCACCGCGTG 61.848 60.000 4.92 3.32 41.02 5.34
203 204 1.598685 CTGGGTAAAACCACCGCGT 60.599 57.895 4.92 0.00 41.02 6.01
204 205 2.329614 CCTGGGTAAAACCACCGCG 61.330 63.158 0.00 0.00 41.02 6.46
205 206 0.824595 AACCTGGGTAAAACCACCGC 60.825 55.000 0.00 0.00 41.02 5.68
206 207 1.241165 GAACCTGGGTAAAACCACCG 58.759 55.000 0.00 0.00 41.02 4.94
207 208 1.241165 CGAACCTGGGTAAAACCACC 58.759 55.000 0.00 0.00 41.02 4.61
208 209 1.241165 CCGAACCTGGGTAAAACCAC 58.759 55.000 0.00 0.00 41.02 4.16
209 210 0.110869 CCCGAACCTGGGTAAAACCA 59.889 55.000 0.00 0.00 44.76 3.67
210 211 2.951269 CCCGAACCTGGGTAAAACC 58.049 57.895 0.00 0.00 44.76 3.27
218 219 4.101448 CCAGAGGCCCGAACCTGG 62.101 72.222 0.00 5.20 41.32 4.45
219 220 3.322466 ACCAGAGGCCCGAACCTG 61.322 66.667 0.00 0.00 41.32 4.00
220 221 3.322466 CACCAGAGGCCCGAACCT 61.322 66.667 0.00 0.00 45.04 3.50
221 222 3.316573 CTCACCAGAGGCCCGAACC 62.317 68.421 0.00 0.00 38.26 3.62
222 223 2.266055 CTCACCAGAGGCCCGAAC 59.734 66.667 0.00 0.00 38.26 3.95
230 231 6.996180 TTAGGGTATTATTCCTCACCAGAG 57.004 41.667 0.00 0.00 41.72 3.35
231 232 7.183112 TGTTTTAGGGTATTATTCCTCACCAGA 59.817 37.037 0.00 0.00 34.75 3.86
232 233 7.343357 TGTTTTAGGGTATTATTCCTCACCAG 58.657 38.462 0.00 0.00 34.75 4.00
233 234 7.273457 TGTTTTAGGGTATTATTCCTCACCA 57.727 36.000 0.00 0.00 34.75 4.17
234 235 7.255486 GCATGTTTTAGGGTATTATTCCTCACC 60.255 40.741 0.00 0.00 34.75 4.02
235 236 7.502561 AGCATGTTTTAGGGTATTATTCCTCAC 59.497 37.037 0.00 0.00 34.75 3.51
236 237 7.582719 AGCATGTTTTAGGGTATTATTCCTCA 58.417 34.615 0.00 0.00 34.75 3.86
237 238 8.352942 CAAGCATGTTTTAGGGTATTATTCCTC 58.647 37.037 0.00 0.00 34.75 3.71
238 239 7.839200 ACAAGCATGTTTTAGGGTATTATTCCT 59.161 33.333 0.00 0.00 35.91 3.36
239 240 8.007405 ACAAGCATGTTTTAGGGTATTATTCC 57.993 34.615 0.00 0.00 35.91 3.01
240 241 8.682710 TGACAAGCATGTTTTAGGGTATTATTC 58.317 33.333 0.00 0.00 40.74 1.75
241 242 8.588290 TGACAAGCATGTTTTAGGGTATTATT 57.412 30.769 0.00 0.00 40.74 1.40
242 243 8.766994 ATGACAAGCATGTTTTAGGGTATTAT 57.233 30.769 0.00 0.00 40.74 1.28
243 244 8.465999 CAATGACAAGCATGTTTTAGGGTATTA 58.534 33.333 0.00 0.00 40.74 0.98
244 245 7.039082 ACAATGACAAGCATGTTTTAGGGTATT 60.039 33.333 0.00 0.00 40.74 1.89
245 246 6.437162 ACAATGACAAGCATGTTTTAGGGTAT 59.563 34.615 0.00 0.00 40.74 2.73
246 247 5.772672 ACAATGACAAGCATGTTTTAGGGTA 59.227 36.000 0.00 0.00 40.74 3.69
247 248 4.588528 ACAATGACAAGCATGTTTTAGGGT 59.411 37.500 0.00 0.00 40.74 4.34
248 249 5.138125 ACAATGACAAGCATGTTTTAGGG 57.862 39.130 0.00 0.00 40.74 3.53
249 250 8.761575 AATAACAATGACAAGCATGTTTTAGG 57.238 30.769 0.00 0.00 40.74 2.69
250 251 9.409312 TGAATAACAATGACAAGCATGTTTTAG 57.591 29.630 0.00 0.00 40.74 1.85
251 252 9.926158 ATGAATAACAATGACAAGCATGTTTTA 57.074 25.926 0.00 0.00 40.74 1.52
252 253 8.836268 ATGAATAACAATGACAAGCATGTTTT 57.164 26.923 0.00 0.00 40.74 2.43
253 254 8.836268 AATGAATAACAATGACAAGCATGTTT 57.164 26.923 0.00 0.00 40.74 2.83
255 256 9.524106 CATAATGAATAACAATGACAAGCATGT 57.476 29.630 0.00 0.00 44.25 3.21
256 257 8.974408 CCATAATGAATAACAATGACAAGCATG 58.026 33.333 0.00 0.00 37.28 4.06
257 258 8.145767 CCCATAATGAATAACAATGACAAGCAT 58.854 33.333 0.00 0.00 39.43 3.79
258 259 7.123997 ACCCATAATGAATAACAATGACAAGCA 59.876 33.333 0.00 0.00 0.00 3.91
259 260 7.491682 ACCCATAATGAATAACAATGACAAGC 58.508 34.615 0.00 0.00 0.00 4.01
266 267 9.667107 CGAGGTATACCCATAATGAATAACAAT 57.333 33.333 18.65 0.00 36.42 2.71
267 268 8.653191 ACGAGGTATACCCATAATGAATAACAA 58.347 33.333 18.65 0.00 36.42 2.83
268 269 8.092068 CACGAGGTATACCCATAATGAATAACA 58.908 37.037 18.65 0.00 36.42 2.41
269 270 8.092687 ACACGAGGTATACCCATAATGAATAAC 58.907 37.037 18.65 0.00 36.42 1.89
270 271 8.092068 CACACGAGGTATACCCATAATGAATAA 58.908 37.037 18.65 0.00 36.42 1.40
271 272 7.452189 TCACACGAGGTATACCCATAATGAATA 59.548 37.037 18.65 0.00 36.42 1.75
272 273 6.269077 TCACACGAGGTATACCCATAATGAAT 59.731 38.462 18.65 0.00 36.42 2.57
273 274 5.599242 TCACACGAGGTATACCCATAATGAA 59.401 40.000 18.65 2.67 36.42 2.57
274 275 5.141910 TCACACGAGGTATACCCATAATGA 58.858 41.667 18.65 13.74 36.42 2.57
275 276 5.462530 TCACACGAGGTATACCCATAATG 57.537 43.478 18.65 11.73 36.42 1.90
276 277 5.723672 CTCACACGAGGTATACCCATAAT 57.276 43.478 18.65 0.00 35.44 1.28
289 290 3.895656 TCCCTTATAATCCCTCACACGAG 59.104 47.826 0.00 0.00 39.16 4.18
290 291 3.918566 TCCCTTATAATCCCTCACACGA 58.081 45.455 0.00 0.00 0.00 4.35
291 292 4.891992 ATCCCTTATAATCCCTCACACG 57.108 45.455 0.00 0.00 0.00 4.49
292 293 5.765182 CACAATCCCTTATAATCCCTCACAC 59.235 44.000 0.00 0.00 0.00 3.82
293 294 5.431731 ACACAATCCCTTATAATCCCTCACA 59.568 40.000 0.00 0.00 0.00 3.58
294 295 5.765182 CACACAATCCCTTATAATCCCTCAC 59.235 44.000 0.00 0.00 0.00 3.51
295 296 5.431731 ACACACAATCCCTTATAATCCCTCA 59.568 40.000 0.00 0.00 0.00 3.86
296 297 5.941788 ACACACAATCCCTTATAATCCCTC 58.058 41.667 0.00 0.00 0.00 4.30
297 298 5.994416 ACACACAATCCCTTATAATCCCT 57.006 39.130 0.00 0.00 0.00 4.20
298 299 6.838382 ACTACACACAATCCCTTATAATCCC 58.162 40.000 0.00 0.00 0.00 3.85
299 300 8.211629 AGAACTACACACAATCCCTTATAATCC 58.788 37.037 0.00 0.00 0.00 3.01
302 303 8.480501 GGTAGAACTACACACAATCCCTTATAA 58.519 37.037 12.94 0.00 37.78 0.98
303 304 7.201848 CGGTAGAACTACACACAATCCCTTATA 60.202 40.741 12.94 0.00 37.78 0.98
304 305 6.406624 CGGTAGAACTACACACAATCCCTTAT 60.407 42.308 12.94 0.00 37.78 1.73
305 306 5.105635 CGGTAGAACTACACACAATCCCTTA 60.106 44.000 12.94 0.00 37.78 2.69
306 307 4.322499 CGGTAGAACTACACACAATCCCTT 60.322 45.833 12.94 0.00 37.78 3.95
307 308 3.194968 CGGTAGAACTACACACAATCCCT 59.805 47.826 12.94 0.00 37.78 4.20
308 309 3.194116 TCGGTAGAACTACACACAATCCC 59.806 47.826 12.94 0.00 37.78 3.85
309 310 4.157289 TCTCGGTAGAACTACACACAATCC 59.843 45.833 12.94 0.00 37.78 3.01
310 311 5.306532 TCTCGGTAGAACTACACACAATC 57.693 43.478 12.94 0.00 37.78 2.67
311 312 4.380655 GCTCTCGGTAGAACTACACACAAT 60.381 45.833 12.94 0.00 37.78 2.71
312 313 3.057736 GCTCTCGGTAGAACTACACACAA 60.058 47.826 12.94 0.00 37.78 3.33
313 314 2.486982 GCTCTCGGTAGAACTACACACA 59.513 50.000 12.94 0.00 37.78 3.72
314 315 2.748532 AGCTCTCGGTAGAACTACACAC 59.251 50.000 12.94 0.00 37.78 3.82
315 316 2.747989 CAGCTCTCGGTAGAACTACACA 59.252 50.000 12.94 0.00 37.78 3.72
316 317 3.008330 TCAGCTCTCGGTAGAACTACAC 58.992 50.000 12.94 3.32 37.78 2.90
317 318 3.271729 CTCAGCTCTCGGTAGAACTACA 58.728 50.000 12.94 0.00 37.78 2.74
318 319 3.272581 ACTCAGCTCTCGGTAGAACTAC 58.727 50.000 3.66 3.66 35.40 2.73
319 320 3.198200 AGACTCAGCTCTCGGTAGAACTA 59.802 47.826 0.00 0.00 0.00 2.24
320 321 2.026636 AGACTCAGCTCTCGGTAGAACT 60.027 50.000 0.00 0.00 0.00 3.01
321 322 2.361789 AGACTCAGCTCTCGGTAGAAC 58.638 52.381 0.00 0.00 0.00 3.01
322 323 2.791347 AGACTCAGCTCTCGGTAGAA 57.209 50.000 0.00 0.00 0.00 2.10
323 324 3.644265 AGATAGACTCAGCTCTCGGTAGA 59.356 47.826 0.00 0.00 0.00 2.59
324 325 3.745975 CAGATAGACTCAGCTCTCGGTAG 59.254 52.174 0.00 0.00 0.00 3.18
325 326 3.388350 TCAGATAGACTCAGCTCTCGGTA 59.612 47.826 0.00 0.00 0.00 4.02
326 327 2.171659 TCAGATAGACTCAGCTCTCGGT 59.828 50.000 0.00 0.00 0.00 4.69
327 328 2.807967 CTCAGATAGACTCAGCTCTCGG 59.192 54.545 0.00 0.00 0.00 4.63
328 329 3.727726 TCTCAGATAGACTCAGCTCTCG 58.272 50.000 0.00 0.00 0.00 4.04
329 330 7.161404 TCTATTCTCAGATAGACTCAGCTCTC 58.839 42.308 0.00 0.00 34.53 3.20
330 331 7.078249 TCTATTCTCAGATAGACTCAGCTCT 57.922 40.000 0.00 0.00 34.53 4.09
331 332 7.148188 CCATCTATTCTCAGATAGACTCAGCTC 60.148 44.444 0.00 0.00 40.42 4.09
332 333 6.660521 CCATCTATTCTCAGATAGACTCAGCT 59.339 42.308 0.00 0.00 40.42 4.24
333 334 6.658816 TCCATCTATTCTCAGATAGACTCAGC 59.341 42.308 0.00 0.00 40.42 4.26
334 335 8.634335 TTCCATCTATTCTCAGATAGACTCAG 57.366 38.462 0.00 0.00 40.42 3.35
335 336 9.599056 ATTTCCATCTATTCTCAGATAGACTCA 57.401 33.333 0.00 0.00 40.42 3.41
336 337 9.859427 CATTTCCATCTATTCTCAGATAGACTC 57.141 37.037 0.00 0.00 40.42 3.36
337 338 9.599056 TCATTTCCATCTATTCTCAGATAGACT 57.401 33.333 0.00 0.00 40.42 3.24
338 339 9.859427 CTCATTTCCATCTATTCTCAGATAGAC 57.141 37.037 0.00 0.00 40.42 2.59
339 340 9.819754 TCTCATTTCCATCTATTCTCAGATAGA 57.180 33.333 0.00 0.00 41.48 1.98
341 342 8.530311 GCTCTCATTTCCATCTATTCTCAGATA 58.470 37.037 0.00 0.00 33.41 1.98
342 343 7.388437 GCTCTCATTTCCATCTATTCTCAGAT 58.612 38.462 0.00 0.00 35.60 2.90
343 344 6.239543 GGCTCTCATTTCCATCTATTCTCAGA 60.240 42.308 0.00 0.00 0.00 3.27
344 345 5.933463 GGCTCTCATTTCCATCTATTCTCAG 59.067 44.000 0.00 0.00 0.00 3.35
345 346 5.221803 GGGCTCTCATTTCCATCTATTCTCA 60.222 44.000 0.00 0.00 0.00 3.27
346 347 5.244755 GGGCTCTCATTTCCATCTATTCTC 58.755 45.833 0.00 0.00 0.00 2.87
347 348 4.042684 GGGGCTCTCATTTCCATCTATTCT 59.957 45.833 0.00 0.00 0.00 2.40
348 349 4.042684 AGGGGCTCTCATTTCCATCTATTC 59.957 45.833 0.00 0.00 0.00 1.75
349 350 3.986134 AGGGGCTCTCATTTCCATCTATT 59.014 43.478 0.00 0.00 0.00 1.73
350 351 3.330110 CAGGGGCTCTCATTTCCATCTAT 59.670 47.826 0.00 0.00 0.00 1.98
351 352 2.707791 CAGGGGCTCTCATTTCCATCTA 59.292 50.000 0.00 0.00 0.00 1.98
352 353 1.493871 CAGGGGCTCTCATTTCCATCT 59.506 52.381 0.00 0.00 0.00 2.90
353 354 1.978454 CAGGGGCTCTCATTTCCATC 58.022 55.000 0.00 0.00 0.00 3.51
354 355 0.106318 GCAGGGGCTCTCATTTCCAT 60.106 55.000 0.00 0.00 36.96 3.41
355 356 1.304282 GCAGGGGCTCTCATTTCCA 59.696 57.895 0.00 0.00 36.96 3.53
356 357 1.454663 GGCAGGGGCTCTCATTTCC 60.455 63.158 0.00 0.00 40.87 3.13
357 358 1.611965 AGGCAGGGGCTCTCATTTC 59.388 57.895 0.00 0.00 40.87 2.17
358 359 3.847058 AGGCAGGGGCTCTCATTT 58.153 55.556 0.00 0.00 40.87 2.32
365 366 1.985473 TATAAGGGGAGGCAGGGGCT 61.985 60.000 0.00 0.00 42.48 5.19
366 367 0.846870 ATATAAGGGGAGGCAGGGGC 60.847 60.000 0.00 0.00 40.13 5.80
367 368 0.995024 CATATAAGGGGAGGCAGGGG 59.005 60.000 0.00 0.00 0.00 4.79
368 369 0.995024 CCATATAAGGGGAGGCAGGG 59.005 60.000 0.00 0.00 0.00 4.45
378 379 6.176183 CCTAGATCAAACAGCCCATATAAGG 58.824 44.000 0.00 0.00 0.00 2.69
379 380 5.645497 GCCTAGATCAAACAGCCCATATAAG 59.355 44.000 0.00 0.00 0.00 1.73
380 381 5.514834 GGCCTAGATCAAACAGCCCATATAA 60.515 44.000 0.00 0.00 34.23 0.98
381 382 4.019321 GGCCTAGATCAAACAGCCCATATA 60.019 45.833 0.00 0.00 34.23 0.86
382 383 3.245052 GGCCTAGATCAAACAGCCCATAT 60.245 47.826 0.00 0.00 34.23 1.78
383 384 2.106511 GGCCTAGATCAAACAGCCCATA 59.893 50.000 0.00 0.00 34.23 2.74
384 385 1.133668 GGCCTAGATCAAACAGCCCAT 60.134 52.381 0.00 0.00 34.23 4.00
385 386 0.255890 GGCCTAGATCAAACAGCCCA 59.744 55.000 0.00 0.00 34.23 5.36
386 387 0.815615 CGGCCTAGATCAAACAGCCC 60.816 60.000 0.00 0.00 37.07 5.19
387 388 1.440145 GCGGCCTAGATCAAACAGCC 61.440 60.000 0.00 0.00 37.03 4.85
388 389 1.440145 GGCGGCCTAGATCAAACAGC 61.440 60.000 12.87 0.00 0.00 4.40
389 390 1.154205 CGGCGGCCTAGATCAAACAG 61.154 60.000 18.34 0.00 0.00 3.16
390 391 1.153449 CGGCGGCCTAGATCAAACA 60.153 57.895 18.34 0.00 0.00 2.83
391 392 2.534903 GCGGCGGCCTAGATCAAAC 61.535 63.158 18.34 0.00 0.00 2.93
392 393 2.203015 GCGGCGGCCTAGATCAAA 60.203 61.111 18.34 0.00 0.00 2.69
393 394 2.715532 GATGCGGCGGCCTAGATCAA 62.716 60.000 18.34 0.00 38.85 2.57
394 395 3.226429 GATGCGGCGGCCTAGATCA 62.226 63.158 18.34 7.28 38.85 2.92
395 396 2.433318 GATGCGGCGGCCTAGATC 60.433 66.667 18.34 11.21 38.85 2.75
396 397 1.257750 TATGATGCGGCGGCCTAGAT 61.258 55.000 18.34 5.72 38.85 1.98
397 398 1.877576 CTATGATGCGGCGGCCTAGA 61.878 60.000 18.34 0.26 38.85 2.43
398 399 1.446792 CTATGATGCGGCGGCCTAG 60.447 63.158 18.34 6.89 38.85 3.02
399 400 1.906333 TCTATGATGCGGCGGCCTA 60.906 57.895 18.34 6.36 38.85 3.93
400 401 3.233980 TCTATGATGCGGCGGCCT 61.234 61.111 18.34 3.37 38.85 5.19
401 402 2.996168 AAGTCTATGATGCGGCGGCC 62.996 60.000 14.25 9.54 38.85 6.13
402 403 1.595382 AAGTCTATGATGCGGCGGC 60.595 57.895 9.78 9.68 40.52 6.53
403 404 1.224069 CCAAGTCTATGATGCGGCGG 61.224 60.000 9.78 0.00 0.00 6.13
404 405 0.249447 TCCAAGTCTATGATGCGGCG 60.249 55.000 0.51 0.51 0.00 6.46
405 406 1.506493 CTCCAAGTCTATGATGCGGC 58.494 55.000 0.00 0.00 0.00 6.53
406 407 1.506493 GCTCCAAGTCTATGATGCGG 58.494 55.000 0.00 0.00 0.00 5.69
407 408 1.506493 GGCTCCAAGTCTATGATGCG 58.494 55.000 0.00 0.00 0.00 4.73
408 409 1.141657 TGGGCTCCAAGTCTATGATGC 59.858 52.381 0.00 0.00 0.00 3.91
409 410 3.565764 TTGGGCTCCAAGTCTATGATG 57.434 47.619 2.84 0.00 38.75 3.07
419 420 1.139498 TGGGTCATCTTGGGCTCCAA 61.139 55.000 6.50 6.50 41.69 3.53
420 421 1.541118 TGGGTCATCTTGGGCTCCA 60.541 57.895 0.00 0.00 0.00 3.86
421 422 1.225704 CTGGGTCATCTTGGGCTCC 59.774 63.158 0.00 0.00 0.00 4.70
422 423 0.179936 CTCTGGGTCATCTTGGGCTC 59.820 60.000 0.00 0.00 0.00 4.70
423 424 0.252881 TCTCTGGGTCATCTTGGGCT 60.253 55.000 0.00 0.00 0.00 5.19
424 425 0.107459 GTCTCTGGGTCATCTTGGGC 60.107 60.000 0.00 0.00 0.00 5.36
425 426 1.484240 GAGTCTCTGGGTCATCTTGGG 59.516 57.143 0.00 0.00 0.00 4.12
426 427 2.465813 AGAGTCTCTGGGTCATCTTGG 58.534 52.381 0.18 0.00 0.00 3.61
427 428 5.598005 AGATAAGAGTCTCTGGGTCATCTTG 59.402 44.000 2.28 0.00 0.00 3.02
428 429 5.776358 AGATAAGAGTCTCTGGGTCATCTT 58.224 41.667 2.28 0.00 0.00 2.40
429 430 5.385198 GAGATAAGAGTCTCTGGGTCATCT 58.615 45.833 2.28 6.94 41.12 2.90
430 431 5.705609 GAGATAAGAGTCTCTGGGTCATC 57.294 47.826 2.28 2.52 41.12 2.92
439 440 5.221244 GCCTGGAGAAAGAGATAAGAGTCTC 60.221 48.000 0.00 0.00 43.95 3.36
440 441 4.649218 GCCTGGAGAAAGAGATAAGAGTCT 59.351 45.833 0.00 0.00 0.00 3.24
441 442 4.649218 AGCCTGGAGAAAGAGATAAGAGTC 59.351 45.833 0.00 0.00 0.00 3.36
442 443 4.619679 AGCCTGGAGAAAGAGATAAGAGT 58.380 43.478 0.00 0.00 0.00 3.24
443 444 4.039124 GGAGCCTGGAGAAAGAGATAAGAG 59.961 50.000 0.00 0.00 0.00 2.85
444 445 3.964031 GGAGCCTGGAGAAAGAGATAAGA 59.036 47.826 0.00 0.00 0.00 2.10
445 446 3.966665 AGGAGCCTGGAGAAAGAGATAAG 59.033 47.826 0.00 0.00 0.00 1.73
446 447 4.000928 AGGAGCCTGGAGAAAGAGATAA 57.999 45.455 0.00 0.00 0.00 1.75
447 448 3.697190 AGGAGCCTGGAGAAAGAGATA 57.303 47.619 0.00 0.00 0.00 1.98
448 449 2.566708 AGGAGCCTGGAGAAAGAGAT 57.433 50.000 0.00 0.00 0.00 2.75
449 450 2.183679 GAAGGAGCCTGGAGAAAGAGA 58.816 52.381 0.00 0.00 0.00 3.10
450 451 1.209261 GGAAGGAGCCTGGAGAAAGAG 59.791 57.143 0.00 0.00 0.00 2.85
451 452 1.203364 AGGAAGGAGCCTGGAGAAAGA 60.203 52.381 0.00 0.00 36.76 2.52
452 453 1.284313 AGGAAGGAGCCTGGAGAAAG 58.716 55.000 0.00 0.00 36.76 2.62
453 454 2.642171 TAGGAAGGAGCCTGGAGAAA 57.358 50.000 0.00 0.00 39.08 2.52
454 455 2.683768 GATAGGAAGGAGCCTGGAGAA 58.316 52.381 0.00 0.00 39.08 2.87
455 456 1.479573 CGATAGGAAGGAGCCTGGAGA 60.480 57.143 0.00 0.00 39.08 3.71
456 457 0.965439 CGATAGGAAGGAGCCTGGAG 59.035 60.000 0.00 0.00 39.08 3.86
457 458 0.261991 ACGATAGGAAGGAGCCTGGA 59.738 55.000 0.00 0.00 39.08 3.86
458 459 0.390860 CACGATAGGAAGGAGCCTGG 59.609 60.000 0.00 0.00 39.08 4.45
459 460 1.339610 CTCACGATAGGAAGGAGCCTG 59.660 57.143 0.00 0.00 39.08 4.85
460 461 1.698506 CTCACGATAGGAAGGAGCCT 58.301 55.000 0.00 0.00 42.15 4.58
461 462 0.676736 CCTCACGATAGGAAGGAGCC 59.323 60.000 2.12 0.00 42.56 4.70
462 463 1.404843 ACCTCACGATAGGAAGGAGC 58.595 55.000 13.57 0.00 42.56 4.70
463 464 3.822940 AGTACCTCACGATAGGAAGGAG 58.177 50.000 13.57 0.00 42.56 3.69
464 465 3.947612 AGTACCTCACGATAGGAAGGA 57.052 47.619 13.57 0.00 42.56 3.36
465 466 3.068307 CCAAGTACCTCACGATAGGAAGG 59.932 52.174 13.57 2.25 44.65 3.46
466 467 3.700038 ACCAAGTACCTCACGATAGGAAG 59.300 47.826 13.57 0.86 39.15 3.46
467 468 3.705051 ACCAAGTACCTCACGATAGGAA 58.295 45.455 13.57 0.00 39.15 3.36
468 469 3.377253 ACCAAGTACCTCACGATAGGA 57.623 47.619 13.57 0.00 39.15 2.94
469 470 4.499357 GCTAACCAAGTACCTCACGATAGG 60.499 50.000 6.31 6.31 42.82 2.57
470 471 4.499357 GGCTAACCAAGTACCTCACGATAG 60.499 50.000 0.00 0.00 37.95 2.08
471 472 3.382546 GGCTAACCAAGTACCTCACGATA 59.617 47.826 0.00 0.00 35.26 2.92
472 473 2.167900 GGCTAACCAAGTACCTCACGAT 59.832 50.000 0.00 0.00 35.26 3.73
473 474 1.547372 GGCTAACCAAGTACCTCACGA 59.453 52.381 0.00 0.00 35.26 4.35
474 475 1.549170 AGGCTAACCAAGTACCTCACG 59.451 52.381 0.00 0.00 39.06 4.35
475 476 3.248495 GAGGCTAACCAAGTACCTCAC 57.752 52.381 2.54 0.00 45.16 3.51
477 478 2.168728 CAGGAGGCTAACCAAGTACCTC 59.831 54.545 0.00 0.00 45.10 3.85
478 479 2.188817 CAGGAGGCTAACCAAGTACCT 58.811 52.381 0.00 0.00 39.06 3.08
479 480 1.209747 CCAGGAGGCTAACCAAGTACC 59.790 57.143 0.00 0.00 39.06 3.34
480 481 1.209747 CCCAGGAGGCTAACCAAGTAC 59.790 57.143 0.00 0.00 39.06 2.73
481 482 1.580059 CCCAGGAGGCTAACCAAGTA 58.420 55.000 0.00 0.00 39.06 2.24
482 483 2.387952 CCCAGGAGGCTAACCAAGT 58.612 57.895 0.00 0.00 39.06 3.16
492 493 4.120755 GCTTGAGGGCCCAGGAGG 62.121 72.222 27.56 10.98 39.47 4.30
493 494 3.333219 TGCTTGAGGGCCCAGGAG 61.333 66.667 27.56 18.70 0.00 3.69
494 495 3.333219 CTGCTTGAGGGCCCAGGA 61.333 66.667 27.56 13.57 0.00 3.86
495 496 4.437587 CCTGCTTGAGGGCCCAGG 62.438 72.222 27.56 17.48 38.36 4.45
516 517 2.112718 CATAGGGAGCCAGGCTGC 59.887 66.667 24.64 24.64 46.16 5.25
517 518 2.834688 CCATAGGGAGCCAGGCTG 59.165 66.667 22.26 7.75 39.88 4.85
535 536 3.798511 GCCCTAGGGGTGGCTCAC 61.799 72.222 29.57 5.97 46.51 3.51
542 543 4.825679 GGAGGCAGCCCTAGGGGT 62.826 72.222 27.44 27.44 46.51 4.95
632 637 6.835819 ACGCATAACAGAATAGCCTAGATA 57.164 37.500 0.00 0.00 0.00 1.98
974 1004 4.450122 GCCGAGCGACGTACGACA 62.450 66.667 24.41 0.00 45.77 4.35
1011 1041 3.861797 CCGGCGCTGTAGGGGATT 61.862 66.667 16.49 0.00 0.00 3.01
1105 1136 4.760047 GCCACCATGTCGGCGAGT 62.760 66.667 11.20 0.63 38.82 4.18
1223 1254 4.659172 CCCGAGCCCCTGCAACAA 62.659 66.667 0.00 0.00 41.13 2.83
1366 1397 1.736586 GACCATGAGCCGATCGAGT 59.263 57.895 18.66 2.18 0.00 4.18
1457 1488 4.236935 CGTATGCATCTTTGGTTTTGCTT 58.763 39.130 0.19 0.00 36.10 3.91
1494 1525 1.854126 CAAACGGTTGTTCGTACGTCT 59.146 47.619 16.05 0.00 43.07 4.18
1601 1632 6.306199 TGGTACTCCATTATTGATCCCAATG 58.694 40.000 0.00 0.00 39.81 2.82
1662 1693 8.736244 GCACAATAGTTCCTAATTTTTCCTACA 58.264 33.333 0.00 0.00 0.00 2.74
2034 2072 9.930693 AAAAACAGAGTAAAGTCTAGTCTATGG 57.069 33.333 0.00 0.00 0.00 2.74
2062 2101 6.367149 GGAAAGTTACGAGGAAAATCTTACGT 59.633 38.462 0.00 0.00 37.68 3.57
2247 2286 4.051237 GCGGAAAAAGCTCAAACAGAAAT 58.949 39.130 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.