Multiple sequence alignment - TraesCS3A01G147100
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3A01G147100
chr3A
100.000
3769
0
0
1
3769
128563659
128567427
0.000000e+00
6961.0
1
TraesCS3A01G147100
chr1A
94.151
2120
62
21
1
2090
389822413
389820326
0.000000e+00
3171.0
2
TraesCS3A01G147100
chr1A
96.976
1554
40
6
2189
3738
389820324
389818774
0.000000e+00
2603.0
3
TraesCS3A01G147100
chr1A
83.737
289
19
12
71
333
56982849
56983135
8.080000e-62
248.0
4
TraesCS3A01G147100
chr1A
83.045
289
22
12
71
333
212577567
212577854
1.750000e-58
237.0
5
TraesCS3A01G147100
chr1D
94.747
1523
64
8
569
2089
309973579
309972071
0.000000e+00
2355.0
6
TraesCS3A01G147100
chr1D
91.792
1596
95
19
2169
3738
309972052
309970467
0.000000e+00
2189.0
7
TraesCS3A01G147100
chr1D
87.016
516
24
13
71
557
309974149
309973648
3.310000e-150
542.0
8
TraesCS3A01G147100
chr1B
93.007
1530
76
13
569
2089
419984797
419986304
0.000000e+00
2204.0
9
TraesCS3A01G147100
chr1B
88.491
1590
119
26
2151
3738
419986304
419987831
0.000000e+00
1864.0
10
TraesCS3A01G147100
chr1B
86.213
544
30
18
24
557
419984208
419984716
7.120000e-152
547.0
11
TraesCS3A01G147100
chr1B
93.137
102
6
1
2199
2300
533757878
533757778
8.430000e-32
148.0
12
TraesCS3A01G147100
chr1B
91.176
102
5
2
2199
2300
640477641
640477544
6.570000e-28
135.0
13
TraesCS3A01G147100
chr4A
85.417
288
14
14
72
333
362910403
362910688
1.330000e-69
274.0
14
TraesCS3A01G147100
chr3B
83.333
306
16
18
53
333
511678847
511679142
2.250000e-62
250.0
15
TraesCS3A01G147100
chr3B
83.737
289
19
11
71
333
727664742
727664456
8.080000e-62
248.0
16
TraesCS3A01G147100
chr6A
83.737
289
19
13
71
333
214069018
214069304
8.080000e-62
248.0
17
TraesCS3A01G147100
chr2A
83.391
289
20
13
71
333
165942552
165942266
3.760000e-60
243.0
18
TraesCS3A01G147100
chr2D
88.172
93
3
1
71
155
633473431
633473523
1.850000e-18
104.0
19
TraesCS3A01G147100
chr2D
87.805
82
2
1
71
144
633467100
633467019
5.190000e-14
89.8
20
TraesCS3A01G147100
chr2D
86.441
59
7
1
1649
1707
615502489
615502546
3.140000e-06
63.9
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3A01G147100
chr3A
128563659
128567427
3768
False
6961.000000
6961
100.0000
1
3769
1
chr3A.!!$F1
3768
1
TraesCS3A01G147100
chr1A
389818774
389822413
3639
True
2887.000000
3171
95.5635
1
3738
2
chr1A.!!$R1
3737
2
TraesCS3A01G147100
chr1D
309970467
309974149
3682
True
1695.333333
2355
91.1850
71
3738
3
chr1D.!!$R1
3667
3
TraesCS3A01G147100
chr1B
419984208
419987831
3623
False
1538.333333
2204
89.2370
24
3738
3
chr1B.!!$F1
3714
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
367
419
0.172352
CTGTCGTCAAGCTCCTCCTC
59.828
60.0
0.0
0.0
0.0
3.71
F
1055
1187
0.393448
TTCCGGTTTGATGTGGTCGA
59.607
50.0
0.0
0.0
0.0
4.20
F
1056
1188
0.611200
TCCGGTTTGATGTGGTCGAT
59.389
50.0
0.0
0.0
0.0
3.59
F
1361
1498
1.295792
TGTTTCCGTCTGTTGTCTGC
58.704
50.0
0.0
0.0
0.0
4.26
F
2053
2192
0.464036
TTCAGACAACACAGCCGAGT
59.536
50.0
0.0
0.0
0.0
4.18
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1361
1498
0.391130
TCCGTCTGCTCGAAAATGGG
60.391
55.000
0.00
0.0
0.00
4.00
R
2034
2171
0.464036
ACTCGGCTGTGTTGTCTGAA
59.536
50.000
0.00
0.0
0.00
3.02
R
2035
2172
1.324383
TACTCGGCTGTGTTGTCTGA
58.676
50.000
5.42
0.0
0.00
3.27
R
2661
2807
1.337260
CCAGTTCTGCTTACTCGTGCT
60.337
52.381
0.00
0.0
0.00
4.40
R
3384
3536
1.302431
TGGGTCACCATGACTTGCG
60.302
57.895
8.75
0.0
46.19
4.85
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
190
208
1.653151
GAAACGGAGACATAGGCCAC
58.347
55.000
5.01
0.00
0.00
5.01
266
285
2.029020
AGAGACGCACAAGCATGAGTAA
60.029
45.455
0.00
0.00
42.27
2.24
270
293
2.224079
ACGCACAAGCATGAGTAACAAG
59.776
45.455
0.00
0.00
42.27
3.16
274
301
4.801891
CACAAGCATGAGTAACAAGCAAT
58.198
39.130
0.00
0.00
44.34
3.56
366
418
1.254284
CCTGTCGTCAAGCTCCTCCT
61.254
60.000
0.00
0.00
0.00
3.69
367
419
0.172352
CTGTCGTCAAGCTCCTCCTC
59.828
60.000
0.00
0.00
0.00
3.71
368
420
1.137825
GTCGTCAAGCTCCTCCTCG
59.862
63.158
0.00
0.00
0.00
4.63
369
421
2.202676
CGTCAAGCTCCTCCTCGC
60.203
66.667
0.00
0.00
0.00
5.03
370
422
2.973899
GTCAAGCTCCTCCTCGCA
59.026
61.111
0.00
0.00
0.00
5.10
826
954
3.699894
CAGCCAGCCTCGTGTCCT
61.700
66.667
0.00
0.00
0.00
3.85
990
1122
1.445238
GAGTGCGGAGAGTGACTGC
60.445
63.158
0.00
0.00
39.73
4.40
1054
1186
0.515564
GTTCCGGTTTGATGTGGTCG
59.484
55.000
0.00
0.00
0.00
4.79
1055
1187
0.393448
TTCCGGTTTGATGTGGTCGA
59.607
50.000
0.00
0.00
0.00
4.20
1056
1188
0.611200
TCCGGTTTGATGTGGTCGAT
59.389
50.000
0.00
0.00
0.00
3.59
1284
1419
3.237522
GAGCTATCGACACCACGTC
57.762
57.895
0.00
0.00
41.62
4.34
1323
1458
2.307098
CCACTCACTCCCATCCTTTCTT
59.693
50.000
0.00
0.00
0.00
2.52
1361
1498
1.295792
TGTTTCCGTCTGTTGTCTGC
58.704
50.000
0.00
0.00
0.00
4.26
1378
1515
1.298157
TGCCCATTTTCGAGCAGACG
61.298
55.000
0.00
0.00
0.00
4.18
1381
1518
1.438651
CCATTTTCGAGCAGACGGAA
58.561
50.000
0.00
0.00
0.00
4.30
1522
1659
3.737172
GTGCACGCCATGGTGTCC
61.737
66.667
28.06
20.56
40.08
4.02
1884
2021
2.568935
GAATTCGTGTCAGCGCTGCC
62.569
60.000
32.44
23.21
0.00
4.85
1889
2026
3.939939
TGTCAGCGCTGCCAGGAA
61.940
61.111
32.44
11.64
0.00
3.36
2030
2167
3.963383
AACGCACAAGAAAAGGTACAG
57.037
42.857
0.00
0.00
0.00
2.74
2031
2168
3.188159
ACGCACAAGAAAAGGTACAGA
57.812
42.857
0.00
0.00
0.00
3.41
2032
2169
2.870411
ACGCACAAGAAAAGGTACAGAC
59.130
45.455
0.00
0.00
0.00
3.51
2033
2170
2.869801
CGCACAAGAAAAGGTACAGACA
59.130
45.455
0.00
0.00
0.00
3.41
2034
2171
3.498397
CGCACAAGAAAAGGTACAGACAT
59.502
43.478
0.00
0.00
0.00
3.06
2035
2172
4.024048
CGCACAAGAAAAGGTACAGACATT
60.024
41.667
0.00
0.00
0.00
2.71
2036
2173
5.452777
GCACAAGAAAAGGTACAGACATTC
58.547
41.667
0.00
0.00
0.00
2.67
2037
2174
5.008613
GCACAAGAAAAGGTACAGACATTCA
59.991
40.000
0.00
0.00
0.00
2.57
2051
2190
1.202639
ACATTCAGACAACACAGCCGA
60.203
47.619
0.00
0.00
0.00
5.54
2053
2192
0.464036
TTCAGACAACACAGCCGAGT
59.536
50.000
0.00
0.00
0.00
4.18
2077
2216
9.896645
AGTAATATTCAGAACATTCAGTCATGT
57.103
29.630
0.00
0.00
39.17
3.21
2078
2217
9.926751
GTAATATTCAGAACATTCAGTCATGTG
57.073
33.333
0.00
0.00
37.46
3.21
2079
2218
4.754372
TTCAGAACATTCAGTCATGTGC
57.246
40.909
0.00
0.00
37.46
4.57
2086
2225
3.575256
ACATTCAGTCATGTGCCAACATT
59.425
39.130
0.00
0.00
44.94
2.71
2089
2228
5.781210
TTCAGTCATGTGCCAACATTTTA
57.219
34.783
0.00
0.00
44.94
1.52
2090
2229
5.119931
TCAGTCATGTGCCAACATTTTAC
57.880
39.130
0.00
0.00
44.94
2.01
2094
2233
7.122501
TCAGTCATGTGCCAACATTTTACATAT
59.877
33.333
0.00
0.00
44.94
1.78
2095
2234
8.404765
CAGTCATGTGCCAACATTTTACATATA
58.595
33.333
0.00
0.00
44.94
0.86
2097
2236
8.187480
GTCATGTGCCAACATTTTACATATACA
58.813
33.333
0.00
0.00
44.94
2.29
2098
2237
8.911965
TCATGTGCCAACATTTTACATATACAT
58.088
29.630
0.00
0.00
44.94
2.29
2158
2297
8.885494
ACTAGTAACGTGTAAAATTAACACCA
57.115
30.769
14.92
2.62
43.46
4.17
2159
2298
9.323985
ACTAGTAACGTGTAAAATTAACACCAA
57.676
29.630
14.92
2.62
43.46
3.67
2161
2300
8.839947
AGTAACGTGTAAAATTAACACCAAAC
57.160
30.769
14.92
11.12
43.46
2.93
2162
2301
8.457261
AGTAACGTGTAAAATTAACACCAAACA
58.543
29.630
14.92
0.00
43.46
2.83
2163
2302
9.070149
GTAACGTGTAAAATTAACACCAAACAA
57.930
29.630
14.92
0.00
43.46
2.83
2164
2303
8.705048
AACGTGTAAAATTAACACCAAACAAT
57.295
26.923
14.92
0.00
43.46
2.71
2165
2304
9.798994
AACGTGTAAAATTAACACCAAACAATA
57.201
25.926
14.92
0.00
43.46
1.90
2166
2305
9.235537
ACGTGTAAAATTAACACCAAACAATAC
57.764
29.630
14.92
0.00
43.46
1.89
2167
2306
9.234384
CGTGTAAAATTAACACCAAACAATACA
57.766
29.630
14.92
0.00
43.46
2.29
2179
2318
6.145371
CACCAAACAATACAATTAAGGTGCAC
59.855
38.462
8.80
8.80
37.74
4.57
2185
2324
7.315142
ACAATACAATTAAGGTGCACAATCTG
58.685
34.615
20.43
9.93
0.00
2.90
2186
2325
7.176515
ACAATACAATTAAGGTGCACAATCTGA
59.823
33.333
20.43
0.00
0.00
3.27
2569
2715
0.520404
TACAGTGAGCTTCCGACGTC
59.480
55.000
5.18
5.18
0.00
4.34
2661
2807
1.967779
TGGAATTCGAGTGTCAGGACA
59.032
47.619
0.00
0.00
39.32
4.02
2687
2833
2.166664
GAGTAAGCAGAACTGGGTCGAT
59.833
50.000
3.99
0.00
0.00
3.59
2718
2864
2.157421
CTGCTTCGACAGGTTGCTC
58.843
57.895
0.00
0.00
33.85
4.26
2736
2882
1.482182
CTCCAGATGATCGTGTGGGAA
59.518
52.381
26.32
10.94
33.55
3.97
2751
2897
1.300481
GGGAAATAAGCTGGAGTCGC
58.700
55.000
0.00
0.00
0.00
5.19
2823
2973
7.737607
TGATAGTATGTTGTGATATAAGGGGGT
59.262
37.037
0.00
0.00
0.00
4.95
2866
3017
4.507710
TGTTGATGATACTCTTGTGAGGC
58.492
43.478
0.00
0.00
44.29
4.70
2986
3137
6.040278
TGTTAGTGACAAAATGGCAGATTTCA
59.960
34.615
0.00
0.00
35.04
2.69
3193
3344
1.705745
GGGGGATAAAGGACCATCTCC
59.294
57.143
1.17
1.17
40.57
3.71
3384
3536
4.799564
TTTCTGGCCCATGAAATTACAC
57.200
40.909
0.00
0.00
0.00
2.90
3619
3795
2.822215
GAGGATTCTACGGGCCTCA
58.178
57.895
0.84
0.00
44.91
3.86
3700
3876
5.397142
TCTTTTACCGAAGAGAACCCTAC
57.603
43.478
0.00
0.00
32.19
3.18
3738
3914
4.108501
TGTAATCATAGGCCTCGTCCTA
57.891
45.455
9.68
0.00
42.45
2.94
3739
3915
4.079970
TGTAATCATAGGCCTCGTCCTAG
58.920
47.826
9.68
0.00
41.63
3.02
3740
3916
2.223803
ATCATAGGCCTCGTCCTAGG
57.776
55.000
9.68
0.82
41.63
3.02
3746
3922
2.840102
CCTCGTCCTAGGCCAGGG
60.840
72.222
17.89
13.25
45.58
4.45
3747
3923
2.840102
CTCGTCCTAGGCCAGGGG
60.840
72.222
17.89
10.97
45.58
4.79
3748
3924
3.352748
TCGTCCTAGGCCAGGGGA
61.353
66.667
17.89
12.91
45.58
4.81
3749
3925
2.122813
CGTCCTAGGCCAGGGGAT
60.123
66.667
17.89
0.00
45.58
3.85
3750
3926
1.155390
CGTCCTAGGCCAGGGGATA
59.845
63.158
17.89
0.14
45.58
2.59
3751
3927
0.900647
CGTCCTAGGCCAGGGGATAG
60.901
65.000
17.89
10.47
45.58
2.08
3752
3928
1.158705
TCCTAGGCCAGGGGATAGC
59.841
63.158
17.89
0.00
45.58
2.97
3753
3929
1.159664
CCTAGGCCAGGGGATAGCT
59.840
63.158
5.01
0.00
41.26
3.32
3754
3930
1.197430
CCTAGGCCAGGGGATAGCTG
61.197
65.000
5.01
0.00
41.26
4.24
3755
3931
1.152030
TAGGCCAGGGGATAGCTGG
60.152
63.158
5.01
0.00
40.97
4.85
3756
3932
2.696253
TAGGCCAGGGGATAGCTGGG
62.696
65.000
5.01
0.00
38.60
4.45
3757
3933
3.574237
GCCAGGGGATAGCTGGGG
61.574
72.222
0.00
0.00
38.60
4.96
3758
3934
2.856000
CCAGGGGATAGCTGGGGG
60.856
72.222
0.00
0.00
34.79
5.40
3759
3935
3.574237
CAGGGGATAGCTGGGGGC
61.574
72.222
0.00
0.00
42.19
5.80
3760
3936
4.122670
AGGGGATAGCTGGGGGCA
62.123
66.667
0.00
0.00
44.79
5.36
3761
3937
3.890926
GGGGATAGCTGGGGGCAC
61.891
72.222
0.00
0.00
44.79
5.01
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
234
253
1.153862
GCGTCTCTGGCTCTCTGTG
60.154
63.158
0.00
0.00
0.00
3.66
266
285
5.184479
GCATGTATCCATCCATATTGCTTGT
59.816
40.000
0.00
0.00
0.00
3.16
270
293
5.404946
GTTGCATGTATCCATCCATATTGC
58.595
41.667
0.00
0.00
0.00
3.56
274
301
3.397282
TGGGTTGCATGTATCCATCCATA
59.603
43.478
12.30
0.00
0.00
2.74
333
385
2.283966
CAGGAGACCCGTCACCCT
60.284
66.667
7.59
5.54
40.59
4.34
369
421
3.190738
TTGGAGGCCGGTCAAGGTG
62.191
63.158
9.71
0.00
0.00
4.00
370
422
2.852075
TTGGAGGCCGGTCAAGGT
60.852
61.111
9.71
0.00
0.00
3.50
826
954
1.593196
CGTGGCAGAAAGAACAAGGA
58.407
50.000
0.00
0.00
0.00
3.36
937
1065
1.376553
GTCCTTGGCTCTCAGTGGC
60.377
63.158
0.00
0.00
0.00
5.01
990
1122
1.820906
CATGGCCATCAGTCCCACG
60.821
63.158
17.61
0.00
0.00
4.94
1038
1170
0.726827
CATCGACCACATCAAACCGG
59.273
55.000
0.00
0.00
0.00
5.28
1054
1186
1.670590
CCGCATCCTCCTCCTCATC
59.329
63.158
0.00
0.00
0.00
2.92
1055
1187
2.515071
GCCGCATCCTCCTCCTCAT
61.515
63.158
0.00
0.00
0.00
2.90
1056
1188
3.157252
GCCGCATCCTCCTCCTCA
61.157
66.667
0.00
0.00
0.00
3.86
1192
1327
3.429141
CAGCGGCAGCCTGTTGAG
61.429
66.667
10.54
0.00
46.67
3.02
1323
1458
4.630644
ACATTCAGAAAGGAGAGAGCAA
57.369
40.909
0.00
0.00
0.00
3.91
1361
1498
0.391130
TCCGTCTGCTCGAAAATGGG
60.391
55.000
0.00
0.00
0.00
4.00
1378
1515
2.041115
GGAACTCCGCCTTGCTTCC
61.041
63.158
0.00
0.00
0.00
3.46
1381
1518
1.078143
GATGGAACTCCGCCTTGCT
60.078
57.895
0.00
0.00
39.43
3.91
1462
1599
1.745864
CTCCTTGCTGCTCTGCCTG
60.746
63.158
0.00
0.00
0.00
4.85
1667
1804
2.734723
CACCTGCTCGTGTGTCGG
60.735
66.667
0.00
0.00
40.32
4.79
1749
1886
2.818274
CCTTACCGGTTGCCGCTC
60.818
66.667
15.04
0.00
46.86
5.03
1884
2021
0.994995
CTTCATCGTCGCAGTTCCTG
59.005
55.000
0.00
0.00
34.12
3.86
1889
2026
4.175599
CTGCTTCATCGTCGCAGT
57.824
55.556
0.00
0.00
44.50
4.40
2030
2167
1.195448
CGGCTGTGTTGTCTGAATGTC
59.805
52.381
0.00
0.00
0.00
3.06
2031
2168
1.202639
TCGGCTGTGTTGTCTGAATGT
60.203
47.619
0.00
0.00
0.00
2.71
2032
2169
1.462283
CTCGGCTGTGTTGTCTGAATG
59.538
52.381
0.00
0.00
0.00
2.67
2033
2170
1.070758
ACTCGGCTGTGTTGTCTGAAT
59.929
47.619
0.00
0.00
0.00
2.57
2034
2171
0.464036
ACTCGGCTGTGTTGTCTGAA
59.536
50.000
0.00
0.00
0.00
3.02
2035
2172
1.324383
TACTCGGCTGTGTTGTCTGA
58.676
50.000
5.42
0.00
0.00
3.27
2036
2173
2.148916
TTACTCGGCTGTGTTGTCTG
57.851
50.000
5.42
0.00
0.00
3.51
2037
2174
4.737855
ATATTACTCGGCTGTGTTGTCT
57.262
40.909
5.42
0.00
0.00
3.41
2051
2190
9.896645
ACATGACTGAATGTTCTGAATATTACT
57.103
29.630
11.63
0.00
37.50
2.24
2053
2192
8.615211
GCACATGACTGAATGTTCTGAATATTA
58.385
33.333
11.63
0.00
38.75
0.98
2132
2271
9.973450
TGGTGTTAATTTTACACGTTACTAGTA
57.027
29.630
11.34
0.00
45.27
1.82
2133
2272
8.885494
TGGTGTTAATTTTACACGTTACTAGT
57.115
30.769
11.34
0.00
45.27
2.57
2135
2274
9.928236
GTTTGGTGTTAATTTTACACGTTACTA
57.072
29.630
11.34
0.00
45.27
1.82
2136
2275
8.457261
TGTTTGGTGTTAATTTTACACGTTACT
58.543
29.630
11.34
0.00
45.27
2.24
2137
2276
8.612233
TGTTTGGTGTTAATTTTACACGTTAC
57.388
30.769
11.34
9.36
45.27
2.50
2138
2277
9.798994
ATTGTTTGGTGTTAATTTTACACGTTA
57.201
25.926
11.34
0.49
45.27
3.18
2139
2278
8.705048
ATTGTTTGGTGTTAATTTTACACGTT
57.295
26.923
11.34
0.00
45.27
3.99
2140
2279
9.235537
GTATTGTTTGGTGTTAATTTTACACGT
57.764
29.630
11.34
0.00
45.27
4.49
2141
2280
9.234384
TGTATTGTTTGGTGTTAATTTTACACG
57.766
29.630
11.34
0.00
45.27
4.49
2150
2289
9.751542
CACCTTAATTGTATTGTTTGGTGTTAA
57.248
29.630
0.00
0.00
38.01
2.01
2151
2290
7.868415
GCACCTTAATTGTATTGTTTGGTGTTA
59.132
33.333
0.00
0.00
42.86
2.41
2152
2291
6.704050
GCACCTTAATTGTATTGTTTGGTGTT
59.296
34.615
0.00
0.00
42.86
3.32
2153
2292
6.183360
TGCACCTTAATTGTATTGTTTGGTGT
60.183
34.615
0.00
0.00
42.86
4.16
2154
2293
6.145371
GTGCACCTTAATTGTATTGTTTGGTG
59.855
38.462
5.22
0.00
43.51
4.17
2155
2294
6.183360
TGTGCACCTTAATTGTATTGTTTGGT
60.183
34.615
15.69
0.00
0.00
3.67
2156
2295
6.219473
TGTGCACCTTAATTGTATTGTTTGG
58.781
36.000
15.69
0.00
0.00
3.28
2157
2296
7.706281
TTGTGCACCTTAATTGTATTGTTTG
57.294
32.000
15.69
0.00
0.00
2.93
2158
2297
8.367156
AGATTGTGCACCTTAATTGTATTGTTT
58.633
29.630
15.69
0.00
0.00
2.83
2159
2298
7.814107
CAGATTGTGCACCTTAATTGTATTGTT
59.186
33.333
15.69
0.00
0.00
2.83
2160
2299
7.176515
TCAGATTGTGCACCTTAATTGTATTGT
59.823
33.333
15.69
0.00
0.00
2.71
2161
2300
7.537715
TCAGATTGTGCACCTTAATTGTATTG
58.462
34.615
15.69
3.70
0.00
1.90
2162
2301
7.701539
TCAGATTGTGCACCTTAATTGTATT
57.298
32.000
15.69
0.00
0.00
1.89
2163
2302
7.701539
TTCAGATTGTGCACCTTAATTGTAT
57.298
32.000
15.69
0.00
0.00
2.29
2164
2303
7.701539
ATTCAGATTGTGCACCTTAATTGTA
57.298
32.000
15.69
4.05
0.00
2.41
2165
2304
6.594788
ATTCAGATTGTGCACCTTAATTGT
57.405
33.333
15.69
0.00
0.00
2.71
2166
2305
7.894376
AAATTCAGATTGTGCACCTTAATTG
57.106
32.000
15.69
8.74
0.00
2.32
2179
2318
7.603404
TGCACCAGGAAAAATAAATTCAGATTG
59.397
33.333
0.00
0.00
0.00
2.67
2362
2507
2.495155
TTTCAGCTTCAGCATGCCTA
57.505
45.000
15.66
0.00
45.16
3.93
2661
2807
1.337260
CCAGTTCTGCTTACTCGTGCT
60.337
52.381
0.00
0.00
0.00
4.40
2718
2864
2.401583
TTTCCCACACGATCATCTGG
57.598
50.000
0.00
0.00
0.00
3.86
2736
2882
3.024547
TCACTAGCGACTCCAGCTTATT
58.975
45.455
0.00
0.00
43.24
1.40
2751
2897
5.473162
TCACACATCAACCCATTTTCACTAG
59.527
40.000
0.00
0.00
0.00
2.57
3065
3216
7.174946
TGGCATGGAAGAGAAAACTAACTAAAG
59.825
37.037
0.00
0.00
0.00
1.85
3068
3219
6.121776
TGGCATGGAAGAGAAAACTAACTA
57.878
37.500
0.00
0.00
0.00
2.24
3193
3344
3.058777
GCAAACTTTGGTTCATGCAATGG
60.059
43.478
3.69
0.00
46.73
3.16
3384
3536
1.302431
TGGGTCACCATGACTTGCG
60.302
57.895
8.75
0.00
46.19
4.85
3405
3557
4.323562
GCCAGTTGAAAGGACCTACAGTAT
60.324
45.833
0.00
0.00
0.00
2.12
3472
3624
7.929245
TGTAATTCTCTTGTTAGTTGCAGTACA
59.071
33.333
0.00
0.00
0.00
2.90
3619
3795
1.840635
GGAGGCTTCCTACATTGGTCT
59.159
52.381
7.80
0.00
40.58
3.85
3682
3858
2.749621
GACGTAGGGTTCTCTTCGGTAA
59.250
50.000
4.04
0.00
0.00
2.85
3700
3876
7.745022
TGATTACAAGAATACTAAACCGACG
57.255
36.000
0.00
0.00
0.00
5.12
3738
3914
2.449322
CCAGCTATCCCCTGGCCT
60.449
66.667
3.32
0.00
42.98
5.19
3739
3915
3.574237
CCCAGCTATCCCCTGGCC
61.574
72.222
0.00
0.00
46.77
5.36
3740
3916
3.574237
CCCCAGCTATCCCCTGGC
61.574
72.222
1.95
0.00
46.77
4.85
3742
3918
3.574237
GCCCCCAGCTATCCCCTG
61.574
72.222
0.00
0.00
38.99
4.45
3743
3919
4.122670
TGCCCCCAGCTATCCCCT
62.123
66.667
0.00
0.00
44.23
4.79
3744
3920
3.890926
GTGCCCCCAGCTATCCCC
61.891
72.222
0.00
0.00
44.23
4.81
3745
3921
3.890926
GGTGCCCCCAGCTATCCC
61.891
72.222
0.00
0.00
44.23
3.85
3746
3922
4.256180
CGGTGCCCCCAGCTATCC
62.256
72.222
0.00
0.00
44.23
2.59
3747
3923
3.161450
TCGGTGCCCCCAGCTATC
61.161
66.667
0.00
0.00
44.23
2.08
3748
3924
3.480133
GTCGGTGCCCCCAGCTAT
61.480
66.667
0.00
0.00
44.23
2.97
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.